npm - pi-gitnexus-fork - Versions diffs - 0.7.0 - Mend

pi-gitnexus-fork 0.7.0

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Files changed (117) hide show

package/.github/workflows/ci.yml +20 -0
package/.gitnexusignore +11 -0
package/.sg-rules/async-function-must-await-or-return.yml +55 -0
package/.sg-rules/catch-must-log-error.yml +78 -0
package/.sg-rules/class-must-implement-or-extend.yml +61 -0
package/.sg-rules/class-property-must-be-readonly.yml +61 -0
package/.sg-rules/error-must-extend-base.yml +56 -0
package/.sg-rules/generic-must-be-constrained.yml +60 -0
package/.sg-rules/import-reexport-risk.yml +9 -0
package/.sg-rules/missing-session-id-in-api.yml +16 -0
package/.sg-rules/no-any-in-generic-args.yml +57 -0
package/.sg-rules/no-await-in-promise-all.yml +28 -0
package/.sg-rules/no-barrel-export.yml +17 -0
package/.sg-rules/no-bq-write-in-module.yml +65 -0
package/.sg-rules/no-console-except-error.yml +27 -0
package/.sg-rules/no-console-in-server.yml +42 -0
package/.sg-rules/no-empty-catch.yml +20 -0
package/.sg-rules/no-empty-function.yml +24 -0
package/.sg-rules/no-eval.yml +28 -0
package/.sg-rules/no-explicit-any.yml +34 -0
package/.sg-rules/no-hardcoded-placeholder-string.yml +23 -0
package/.sg-rules/no-hardcoded-secrets.yml +32 -0
package/.sg-rules/no-innerHTML.yml +22 -0
package/.sg-rules/no-json-parse-without-trycatch.yml +33 -0
package/.sg-rules/no-magic-numbers.yml +25 -0
package/.sg-rules/no-nested-ternary.yml +21 -0
package/.sg-rules/no-non-null-assertion.yml +25 -0
package/.sg-rules/no-stub-implementation.yml +44 -0
package/.sg-rules/no-throw-literal.yml +50 -0
package/.sg-rules/no-todo-comment.yml +24 -0
package/.sg-rules/no-ts-ignore-comment.yml +48 -0
package/.sg-rules/no-type-assertion-in-jsx.yml +23 -0
package/.sg-rules/no-unguarded-trim.yml +24 -0
package/.sg-rules/no-unknown-without-narrowing.yml +76 -0
package/.sg-rules/no-unsafe-bracket-access.yml +58 -0
package/.sg-rules/no-unsafe-type-assertion.yml +45 -0
package/.sg-rules/switch-must-be-exhaustive.yml +62 -0
package/.sg-rules/zod-async-refine-without-abort.yml +62 -0
package/.sg-rules/zod-enum-unsafe-access.yml +59 -0
package/.sg-rules/zod-nested-object-deep-path.yml +70 -0
package/.sg-rules/zod-optional-without-default-in-route.yml +50 -0
package/.sg-rules/zod-parse-not-safe.yml +42 -0
package/.sg-rules/zod-preprocess-without-fallback.yml +58 -0
package/.sg-rules/zod-refine-no-return-undefined.yml +54 -0
package/.sg-rules/zod-transform-without-output-type.yml +52 -0
package/.sg-sha +1 -0
package/.sgignore +4 -0
package/AGENTS.md +1 -0
package/CHANGELOG.md +99 -0
package/LICENSE +21 -0
package/README.md +113 -0
package/biome.json +25 -0
package/coverage/base.css +224 -0
package/coverage/block-navigation.js +87 -0
package/coverage/clover.xml +890 -0
package/coverage/coverage-final.json +12 -0
package/coverage/favicon.png +0 -0
package/coverage/index.html +131 -0
package/coverage/prettify.css +1 -0
package/coverage/prettify.js +2 -0
package/coverage/sort-arrow-sprite.png +0 -0
package/coverage/sorter.js +210 -0
package/coverage/src/augment-remote.ts.html +274 -0
package/coverage/src/gitnexus.ts.html +1363 -0
package/coverage/src/index.html +236 -0
package/coverage/src/index.ts.html +1561 -0
package/coverage/src/mcp-client-factory.ts.html +367 -0
package/coverage/src/mcp-client-stdio.ts.html +736 -0
package/coverage/src/mcp-client.ts.html +568 -0
package/coverage/src/remote-mcp-client.ts.html +709 -0
package/coverage/src/repo-resolver.ts.html +526 -0
package/coverage/src/tools.ts.html +970 -0
package/coverage/src/ui/index.html +131 -0
package/coverage/src/ui/main-menu.ts.html +502 -0
package/coverage/src/ui/settings-menu.ts.html +460 -0
package/dist/augment-remote.d.ts +11 -0
package/dist/augment-remote.js +55 -0
package/dist/gitnexus.d.ts +103 -0
package/dist/gitnexus.js +410 -0
package/dist/index.d.ts +2 -0
package/dist/index.js +479 -0
package/dist/mcp-client-factory.d.ts +19 -0
package/dist/mcp-client-factory.js +78 -0
package/dist/mcp-client-stdio.d.ts +35 -0
package/dist/mcp-client-stdio.js +186 -0
package/dist/mcp-client.d.ts +45 -0
package/dist/mcp-client.js +145 -0
package/dist/remote-mcp-client.d.ts +43 -0
package/dist/remote-mcp-client.js +181 -0
package/dist/repo-resolver.d.ts +47 -0
package/dist/repo-resolver.js +123 -0
package/dist/tools.d.ts +6 -0
package/dist/tools.js +230 -0
package/dist/ui/main-menu.d.ts +33 -0
package/dist/ui/main-menu.js +102 -0
package/dist/ui/settings-menu.d.ts +16 -0
package/dist/ui/settings-menu.js +95 -0
package/docs/design/remote-mcp-backend.md +153 -0
package/media/screenshot.png +0 -0
package/package.json +61 -0
package/sgconfig.yml +4 -0
package/skills/gitnexus-debugging/SKILL.md +84 -0
package/skills/gitnexus-exploring/SKILL.md +73 -0
package/skills/gitnexus-impact-analysis/SKILL.md +93 -0
package/skills/gitnexus-pr-review/SKILL.md +109 -0
package/skills/gitnexus-refactoring/SKILL.md +85 -0
package/src/augment-remote.ts +63 -0
package/src/gitnexus.ts +426 -0
package/src/index.ts +492 -0
package/src/mcp-client-factory.ts +94 -0
package/src/mcp-client-stdio.ts +217 -0
package/src/mcp-client.ts +208 -0
package/src/remote-mcp-client.ts +250 -0
package/src/repo-resolver.ts +147 -0
package/src/tools.ts +295 -0
package/src/ui/main-menu.ts +139 -0
package/src/ui/settings-menu.ts +125 -0

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+<a name='L213'></a><a href='#L213'>213</a>
+<a name='L214'></a><a href='#L214'>214</a>
+<a name='L215'></a><a href='#L215'>215</a>
+<a name='L216'></a><a href='#L216'>216</a>
+<a name='L217'></a><a href='#L217'>217</a>
+<a name='L218'></a><a href='#L218'>218</a>
+<a name='L219'></a><a href='#L219'>219</a>
+<a name='L220'></a><a href='#L220'>220</a>
+<a name='L221'></a><a href='#L221'>221</a>
+<a name='L222'></a><a href='#L222'>222</a>
+<a name='L223'></a><a href='#L223'>223</a>
+<a name='L224'></a><a href='#L224'>224</a>
+<a name='L225'></a><a href='#L225'>225</a>
+<a name='L226'></a><a href='#L226'>226</a>
+<a name='L227'></a><a href='#L227'>227</a>
+<a name='L228'></a><a href='#L228'>228</a>
+<a name='L229'></a><a href='#L229'>229</a>
+<a name='L230'></a><a href='#L230'>230</a>
+<a name='L231'></a><a href='#L231'>231</a>
+<a name='L232'></a><a href='#L232'>232</a>
+<a name='L233'></a><a href='#L233'>233</a>
+<a name='L234'></a><a href='#L234'>234</a>
+<a name='L235'></a><a href='#L235'>235</a>
+<a name='L236'></a><a href='#L236'>236</a>
+<a name='L237'></a><a href='#L237'>237</a>
+<a name='L238'></a><a href='#L238'>238</a>
+<a name='L239'></a><a href='#L239'>239</a>
+<a name='L240'></a><a href='#L240'>240</a>
+<a name='L241'></a><a href='#L241'>241</a>
+<a name='L242'></a><a href='#L242'>242</a>
+<a name='L243'></a><a href='#L243'>243</a>
+<a name='L244'></a><a href='#L244'>244</a>
+<a name='L245'></a><a href='#L245'>245</a>
+<a name='L246'></a><a href='#L246'>246</a>
+<a name='L247'></a><a href='#L247'>247</a>
+<a name='L248'></a><a href='#L248'>248</a>
+<a name='L249'></a><a href='#L249'>249</a>
+<a name='L250'></a><a href='#L250'>250</a>
+<a name='L251'></a><a href='#L251'>251</a>
+<a name='L252'></a><a href='#L252'>252</a>
+<a name='L253'></a><a href='#L253'>253</a>
+<a name='L254'></a><a href='#L254'>254</a>
+<a name='L255'></a><a href='#L255'>255</a>
+<a name='L256'></a><a href='#L256'>256</a>
+<a name='L257'></a><a href='#L257'>257</a>
+<a name='L258'></a><a href='#L258'>258</a>
+<a name='L259'></a><a href='#L259'>259</a>
+<a name='L260'></a><a href='#L260'>260</a>
+<a name='L261'></a><a href='#L261'>261</a>
+<a name='L262'></a><a href='#L262'>262</a>
+<a name='L263'></a><a href='#L263'>263</a>
+<a name='L264'></a><a href='#L264'>264</a>
+<a name='L265'></a><a href='#L265'>265</a>
+<a name='L266'></a><a href='#L266'>266</a>
+<a name='L267'></a><a href='#L267'>267</a>
+<a name='L268'></a><a href='#L268'>268</a>
+<a name='L269'></a><a href='#L269'>269</a>
+<a name='L270'></a><a href='#L270'>270</a>
+<a name='L271'></a><a href='#L271'>271</a>
+<a name='L272'></a><a href='#L272'>272</a>
+<a name='L273'></a><a href='#L273'>273</a>
+<a name='L274'></a><a href='#L274'>274</a>
+<a name='L275'></a><a href='#L275'>275</a>
+<a name='L276'></a><a href='#L276'>276</a>
+<a name='L277'></a><a href='#L277'>277</a>
+<a name='L278'></a><a href='#L278'>278</a>
+<a name='L279'></a><a href='#L279'>279</a>
+<a name='L280'></a><a href='#L280'>280</a>
+<a name='L281'></a><a href='#L281'>281</a>
+<a name='L282'></a><a href='#L282'>282</a>
+<a name='L283'></a><a href='#L283'>283</a>
+<a name='L284'></a><a href='#L284'>284</a>
+<a name='L285'></a><a href='#L285'>285</a>
+<a name='L286'></a><a href='#L286'>286</a>
+<a name='L287'></a><a href='#L287'>287</a>
+<a name='L288'></a><a href='#L288'>288</a>
+<a name='L289'></a><a href='#L289'>289</a>
+<a name='L290'></a><a href='#L290'>290</a>
+<a name='L291'></a><a href='#L291'>291</a>
+<a name='L292'></a><a href='#L292'>292</a>
+<a name='L293'></a><a href='#L293'>293</a>
+<a name='L294'></a><a href='#L294'>294</a>
+<a name='L295'></a><a href='#L295'>295</a>
+<a name='L296'></a><a href='#L296'>296</a>
+<a name='L297'></a><a href='#L297'>297</a>
+<a name='L298'></a><a href='#L298'>298</a>
+<a name='L299'></a><a href='#L299'>299</a>
+<a name='L300'></a><a href='#L300'>300</a>
+<a name='L301'></a><a href='#L301'>301</a>
+<a name='L302'></a><a href='#L302'>302</a>
+<a name='L303'></a><a href='#L303'>303</a>
+<a name='L304'></a><a href='#L304'>304</a>
+<a name='L305'></a><a href='#L305'>305</a>
+<a name='L306'></a><a href='#L306'>306</a>
+<a name='L307'></a><a href='#L307'>307</a>
+<a name='L308'></a><a href='#L308'>308</a>
+<a name='L309'></a><a href='#L309'>309</a>
+<a name='L310'></a><a href='#L310'>310</a>
+<a name='L311'></a><a href='#L311'>311</a>
+<a name='L312'></a><a href='#L312'>312</a>
+<a name='L313'></a><a href='#L313'>313</a>
+<a name='L314'></a><a href='#L314'>314</a>
+<a name='L315'></a><a href='#L315'>315</a>
+<a name='L316'></a><a href='#L316'>316</a>
+<a name='L317'></a><a href='#L317'>317</a>
+<a name='L318'></a><a href='#L318'>318</a>
+<a name='L319'></a><a href='#L319'>319</a>
+<a name='L320'></a><a href='#L320'>320</a>
+<a name='L321'></a><a href='#L321'>321</a>
+<a name='L322'></a><a href='#L322'>322</a>
+<a name='L323'></a><a href='#L323'>323</a>
+<a name='L324'></a><a href='#L324'>324</a>
+<a name='L325'></a><a href='#L325'>325</a>
+<a name='L326'></a><a href='#L326'>326</a>
+<a name='L327'></a><a href='#L327'>327</a>
+<a name='L328'></a><a href='#L328'>328</a>
+<a name='L329'></a><a href='#L329'>329</a>
+<a name='L330'></a><a href='#L330'>330</a>
+<a name='L331'></a><a href='#L331'>331</a>
+<a name='L332'></a><a href='#L332'>332</a>
+<a name='L333'></a><a href='#L333'>333</a>
+<a name='L334'></a><a href='#L334'>334</a>
+<a name='L335'></a><a href='#L335'>335</a>
+<a name='L336'></a><a href='#L336'>336</a>
+<a name='L337'></a><a href='#L337'>337</a>
+<a name='L338'></a><a href='#L338'>338</a>
+<a name='L339'></a><a href='#L339'>339</a>
+<a name='L340'></a><a href='#L340'>340</a>
+<a name='L341'></a><a href='#L341'>341</a>
+<a name='L342'></a><a href='#L342'>342</a>
+<a name='L343'></a><a href='#L343'>343</a>
+<a name='L344'></a><a href='#L344'>344</a>
+<a name='L345'></a><a href='#L345'>345</a>
+<a name='L346'></a><a href='#L346'>346</a>
+<a name='L347'></a><a href='#L347'>347</a>
+<a name='L348'></a><a href='#L348'>348</a>
+<a name='L349'></a><a href='#L349'>349</a>
+<a name='L350'></a><a href='#L350'>350</a>
+<a name='L351'></a><a href='#L351'>351</a>
+<a name='L352'></a><a href='#L352'>352</a>
+<a name='L353'></a><a href='#L353'>353</a>
+<a name='L354'></a><a href='#L354'>354</a>
+<a name='L355'></a><a href='#L355'>355</a>
+<a name='L356'></a><a href='#L356'>356</a>
+<a name='L357'></a><a href='#L357'>357</a>
+<a name='L358'></a><a href='#L358'>358</a>
+<a name='L359'></a><a href='#L359'>359</a>
+<a name='L360'></a><a href='#L360'>360</a>
+<a name='L361'></a><a href='#L361'>361</a>
+<a name='L362'></a><a href='#L362'>362</a>
+<a name='L363'></a><a href='#L363'>363</a>
+<a name='L364'></a><a href='#L364'>364</a>
+<a name='L365'></a><a href='#L365'>365</a>
+<a name='L366'></a><a href='#L366'>366</a>
+<a name='L367'></a><a href='#L367'>367</a>
+<a name='L368'></a><a href='#L368'>368</a>
+<a name='L369'></a><a href='#L369'>369</a>
+<a name='L370'></a><a href='#L370'>370</a>
+<a name='L371'></a><a href='#L371'>371</a>
+<a name='L372'></a><a href='#L372'>372</a>
+<a name='L373'></a><a href='#L373'>373</a>
+<a name='L374'></a><a href='#L374'>374</a>
+<a name='L375'></a><a href='#L375'>375</a>
+<a name='L376'></a><a href='#L376'>376</a>
+<a name='L377'></a><a href='#L377'>377</a>
+<a name='L378'></a><a href='#L378'>378</a>
+<a name='L379'></a><a href='#L379'>379</a>
+<a name='L380'></a><a href='#L380'>380</a>
+<a name='L381'></a><a href='#L381'>381</a>
+<a name='L382'></a><a href='#L382'>382</a>
+<a name='L383'></a><a href='#L383'>383</a>
+<a name='L384'></a><a href='#L384'>384</a>
+<a name='L385'></a><a href='#L385'>385</a>
+<a name='L386'></a><a href='#L386'>386</a>
+<a name='L387'></a><a href='#L387'>387</a>
+<a name='L388'></a><a href='#L388'>388</a>
+<a name='L389'></a><a href='#L389'>389</a>
+<a name='L390'></a><a href='#L390'>390</a>
+<a name='L391'></a><a href='#L391'>391</a>
+<a name='L392'></a><a href='#L392'>392</a>
+<a name='L393'></a><a href='#L393'>393</a>
+<a name='L394'></a><a href='#L394'>394</a>
+<a name='L395'></a><a href='#L395'>395</a>
+<a name='L396'></a><a href='#L396'>396</a>
+<a name='L397'></a><a href='#L397'>397</a>
+<a name='L398'></a><a href='#L398'>398</a>
+<a name='L399'></a><a href='#L399'>399</a>
+<a name='L400'></a><a href='#L400'>400</a>
+<a name='L401'></a><a href='#L401'>401</a>
+<a name='L402'></a><a href='#L402'>402</a>
+<a name='L403'></a><a href='#L403'>403</a>
+<a name='L404'></a><a href='#L404'>404</a>
+<a name='L405'></a><a href='#L405'>405</a>
+<a name='L406'></a><a href='#L406'>406</a>
+<a name='L407'></a><a href='#L407'>407</a>
+<a name='L408'></a><a href='#L408'>408</a>
+<a name='L409'></a><a href='#L409'>409</a>
+<a name='L410'></a><a href='#L410'>410</a>
+<a name='L411'></a><a href='#L411'>411</a>
+<a name='L412'></a><a href='#L412'>412</a>
+<a name='L413'></a><a href='#L413'>413</a>
+<a name='L414'></a><a href='#L414'>414</a>
+<a name='L415'></a><a href='#L415'>415</a>
+<a name='L416'></a><a href='#L416'>416</a>
+<a name='L417'></a><a href='#L417'>417</a>
+<a name='L418'></a><a href='#L418'>418</a>
+<a name='L419'></a><a href='#L419'>419</a>
+<a name='L420'></a><a href='#L420'>420</a>
+<a name='L421'></a><a href='#L421'>421</a>
+<a name='L422'></a><a href='#L422'>422</a>
+<a name='L423'></a><a href='#L423'>423</a>
+<a name='L424'></a><a href='#L424'>424</a>
+<a name='L425'></a><a href='#L425'>425</a>
+<a name='L426'></a><a href='#L426'>426</a>
+<a name='L427'></a><a href='#L427'>427</a></td><td class="line-coverage quiet"><span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span>
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+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
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+<span class="cline-any cline-no">&nbsp;</span>
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+<span class="cline-any cline-neutral">&nbsp;</span>
+<span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">import spawn from 'cross-spawn';
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';
+import { homedir } from 'os';
+import { basename, extname, join, posix, relative, resolve, sep } from 'path';
+&nbsp;
+/** Max output chars returned to the LLM. Prevents context flooding. JS strings are UTF-16 chars, not bytes. */
+export const MAX_OUTPUT_CHARS = 8 * 1024;
+&nbsp;
+/**
+ * Environment passed to all child processes.
+ * On session_start, the agent's PATH is merged with the login shell's PATH
+ * (via resolveShellPath) so that nvm/fnm/volta paths are picked up while
+ * preserving any directories the agent already had (e.g. ~/.local/share/nvm/…).
+ */
+export let spawnEnv: NodeJS.ProcessEnv = process.env;
+export function <span class="fstat-no" title="function not covered" >updateSpawnEnv(e</span>nv: NodeJS.ProcessEnv): void { <span class="cstat-no" title="statement not covered" >spawnEnv = env; }</span>
+&nbsp;
+/**
+ * Resolved command prefix for invoking gitnexus.
+ * Defaults to ['gitnexus']; session_start may override it from the flag or saved config.
+ */
+export let gitnexusCmd: string[] = ['gitnexus'];
+export function <span class="fstat-no" title="function not covered" >setGitnexusCmd(c</span>md: string[]): void { <span class="cstat-no" title="statement not covered" >gitnexusCmd = cmd; }</span>
+&nbsp;
+const CONFIG_PATH = join(homedir(), '.pi', 'pi-gitnexus.json');
+&nbsp;
+/** Supported MCP transport modes. */
+export type McpMode = 'auto' | 'local' | 'remote';
+&nbsp;
+/** Persisted configuration for pi-gitnexus. Loaded from ~/.pi/pi-gitnexus.json. */
+export interface GitNexusConfig {
+  /** Transport mode: 'auto' probes local binary first, 'local' forces stdio, 'remote' forces HTTP. */
+  mode?: McpMode;
+  /** Remote MCP server URL (StreamableHTTP). Only used when mode is 'remote' or 'auto' fallback. */
+  serverUrl?: string;
+  /** Local gitnexus command override, e.g. 'npx gitnexus@latest'. */
+  cmd?: string;
+  /** Whether the tool_result hook auto-appends graph context. Default: true. */
+  autoAugment?: boolean;
+  /** Augment subprocess timeout in seconds. Default: 8. */
+  augmentTimeout?: number;
+  /** Maximum number of augment calls per tool_result event. Default: 3. */
+  maxAugmentsPerResult?: number;
+  /** Maximum secondary file patterns extracted from grep output. Default: 2. */
+  maxSecondaryPatterns?: number;
+}
+&nbsp;
+/** Validate and normalize a McpMode value. Returns 'auto' for invalid values. */
+export function validateMcpMode(mode: unknown): McpMode {
+  if (mode === 'local' || mode === 'remote' || mode === 'auto') return mode;
+  return 'auto';
+}
+&nbsp;
+/** Default remote MCP server URL. */
+export const DEFAULT_SERVER_URL = 'http://100.114.135.99:4747/api/mcp';
+&nbsp;
+export function loadSavedConfig(): GitNexusConfig {
+  try {
+    const raw = JSON.parse(readFileSync(CONFIG_PATH, 'utf8')) as Record&lt;string, unknown&gt;;
+    // Environment variables take highest precedence over file config
+    const envMode = process.env.GITNEXUS_MODE ? validateMcpMode(process.env.GITNEXUS_MODE) : undefined;
+    const envUrl = process.env.GITNEXUS_SERVER_URL || <span class="branch-1 cbranch-no" title="branch not covered" >undefined;</span>
+    return {
+      mode: envMode ?? <span class="branch-1 cbranch-no" title="branch not covered" >validateMcpMode(raw.mode),</span>
+      serverUrl: envUrl ?? (<span class="branch-1 cbranch-no" title="branch not covered" >typeof raw.serverUrl === 'string' &amp;&amp; raw.serverUrl.trim() ? raw.serverUrl.trim() : undefined),</span>
+      cmd: typeof raw.cmd === 'string' ? raw.cmd : undefined,
+      autoAugment: typeof raw.autoAugment === 'boolean' ? raw.autoAugment : undefined,
+      augmentTimeout: typeof raw.augmentTimeout === 'number' ? raw.augmentTimeout : undefined,
+      maxAugmentsPerResult: typeof raw.maxAugmentsPerResult === 'number' ? raw.maxAugmentsPerResult : undefined,
+      maxSecondaryPatterns: typeof raw.maxSecondaryPatterns === 'number' ? raw.maxSecondaryPatterns : undefined,
+    };
+  } catch {
+    return {};
+  }
+}
+&nbsp;
+export function <span class="fstat-no" title="function not covered" >saveConfig(c</span>onfig: GitNexusConfig): void {
+<span class="cstat-no" title="statement not covered" >  try {</span>
+<span class="cstat-no" title="statement not covered" >    mkdirSync(join(homedir(), '.pi'), { recursive: true });</span>
+<span class="cstat-no" title="statement not covered" >    writeFileSync(CONFIG_PATH, JSON.stringify(config, null, 2) + '\n');</span>
+  } catch { /* ignore write errors */ }
+}
+&nbsp;
+export function resolveGitNexusCmd(flag: string | undefined, saved: string | undefined): string[] {
+  const cmd = flag?.trim() || saved?.trim() || <span class="branch-2 cbranch-no" title="branch not covered" >'gitnexus';</span>
+  return cmd.split(/\s+/);
+}
+&nbsp;
+export function normalizePathArg(path: string): string {
+  return path.startsWith('@') ? path.slice(1) : path;
+}
+&nbsp;
+export function expandUserPath(path: string): string {
+  return path === '~' || path.startsWith('~/')
+    ? join(homedir(), path.slice(2))
+    : path;
+}
+&nbsp;
+/** Default augment subprocess timeout in ms. Overridden by config.augmentTimeout. */
+const DEFAULT_AUGMENT_TIMEOUT = 8_000;
+&nbsp;
+/** Current augment timeout in ms. Updated by setAugmentTimeout(). */
+let augmentTimeout = DEFAULT_AUGMENT_TIMEOUT;
+&nbsp;
+export function setAugmentTimeout(seconds: number): void {
+  augmentTimeout = seconds * 1000;
+}
+&nbsp;
+&nbsp;
+/** Per-cwd cache: resolved repo root with .gitnexus, or null if none found. */
+const indexRootCache = new Map&lt;string, string | null&gt;();
+&nbsp;
+/** Walk up ancestors looking for a .gitnexus/ directory. Result is cached per cwd. */
+export function findGitNexusRoot(cwd: string): string | null {
+  <span class="missing-if-branch" title="if path not taken" >I</span>if (indexRootCache.has(cwd)) <span class="cstat-no" title="statement not covered" >return indexRootCache.get(cwd)!;</span>
+  let dir = cwd;
+  while (true) {
+    if (existsSync(resolve(dir, '.gitnexus'))) {
+      indexRootCache.set(cwd, dir);
+      return dir;
+    }
+    const parent = resolve(dir, '..');
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (parent === dir) <span class="cstat-no" title="statement not covered" >break;</span>
+    dir = parent;
+  }
+<span class="cstat-no" title="statement not covered" >  indexRootCache.set(cwd, null);</span>
+<span class="cstat-no" title="statement not covered" >  return null;</span>
+}
+&nbsp;
+export function <span class="fstat-no" title="function not covered" >findGitNexusIndex(c</span>wd: string): boolean {
+<span class="cstat-no" title="statement not covered" >  return findGitNexusRoot(cwd) != null;</span>
+}
+&nbsp;
+/** Clear the index cache. Call on session_start when cwd may have changed. */
+export function <span class="fstat-no" title="function not covered" >clearIndexCache(): void {</span>
+<span class="cstat-no" title="statement not covered" >  indexRootCache.clear();</span>
+}
+&nbsp;
+/** File extensions worth augmenting when the agent reads a file. */
+const CODE_EXTENSIONS = new Set([
+  '.sol', '.ts', '.tsx', '.js', '.jsx', '.py', '.go', '.rs', '.java',
+  '.kt', '.swift', '.c', '.cpp', '.h', '.hpp', '.cs', '.rb', '.php',
+  '.vy', '.fe', '.huff', '.md', '.mdx',
+]);
+&nbsp;
+/**
+ * Extract the longest identifier-like literal from a regex pattern.
+ * Splits on metacharacters, returns the longest segment that looks like
+ * a code identifier (&gt;= 3 chars, starts with letter/underscore).
+ */
+export function extractLiteralFromRegex(raw: string): string | null {
+  const segments = raw.split(/[\\^$.*+?()[\]{}|]+/);
+  let best: string | null = null;
+  for (const seg of segments) {
+    const clean = seg.replace(/['"]/g, '');
+    if (clean.length &gt;= 3 &amp;&amp; /^[a-zA-Z_]\w*$/.test(clean)) {
+      if (!best || clean.length &gt; best.length) best = clean;
+    }
+  }
+  return best;
+}
+&nbsp;
+/**
+ * Simple shell-aware tokenizer for bash commands.
+ * Respects single/double quotes. Inserts a '|' boundary token at
+ * pipe, &amp;&amp;, ||, and ; boundaries so extractPattern can reset state.
+ */
+function tokenizeBashCmd(cmd: string): string[] {
+  const tokens: string[] = [];
+  let current = '';
+  let inSingle = false;
+  let inDouble = false;
+&nbsp;
+  const flush = () =&gt; { if (current) { tokens.push(current); current = ''; } };
+&nbsp;
+  for (let i = 0; i &lt; cmd.length; i++) {
+    const ch = cmd[i];
+&nbsp;
+    if (inSingle) {
+      if (ch === "'") { inSingle = false; } else { current += ch; }
+      continue;
+    }
+    if (inDouble) {
+      if (ch === '"') { inDouble = false; } else { current += ch; }
+      continue;
+    }
+&nbsp;
+    // Command boundaries: |, &amp;&amp;, ||, ;
+    if (ch === '|' || ch === ';') {
+      flush();
+      tokens.push('|'); // boundary marker
+      <span class="missing-if-branch" title="if path not taken" >I</span>if (ch === '|' &amp;&amp; cmd[i + 1] === '|') <span class="cstat-no" title="statement not covered" >i++; // skip ||</span>
+      continue;
+    }
+    if (ch === '&amp;' &amp;&amp; cmd[i + 1] === '&amp;') {
+      flush();
+      tokens.push('|'); // boundary marker
+      i++; // skip second &amp;
+      continue;
+    }
+&nbsp;
+    if (ch === "'") { inSingle = true; continue; }
+    if (ch === '"') { inDouble = true; continue; }
+&nbsp;
+    if (/\s/.test(ch)) {
+      flush();
+    } else {
+      current += ch;
+    }
+  }
+  flush();
+  return tokens;
+}
+&nbsp;
+/**
+ * Extract the primary search pattern from a tool's input object.
+ *
+ * grep  → input.pattern
+ * find  → basename of the glob pattern (e.g. "**\/foo.ts" → "foo")
+ * bash  → grep/rg pattern, find -name value, or cat/head/tail filename
+ * read  → basename of the file path (code files only)
+ *
+ * Returns null if pattern is missing or shorter than 3 chars.
+ */
+export function extractPattern(toolName: string, input: Record&lt;string, unknown&gt;): string | null {
+  let pattern: string | null = null;
+&nbsp;
+  if (toolName === 'grep') {
+    const raw = typeof input.pattern === 'string' ? input.pattern : <span class="branch-1 cbranch-no" title="branch not covered" >null;</span>
+    pattern = raw ? extractLiteralFromRegex(raw) : <span class="branch-1 cbranch-no" title="branch not covered" >null;</span>
+  } else if (toolName === 'find') {
+    // pi's find tool field name is unconfirmed — try common variants
+    const raw =
+      typeof input.pattern === 'string' ? input.pattern :
+<span class="branch-1 cbranch-no" title="branch not covered" >      typeof input.glob    === 'string' ? input.glob    :</span>
+      typeof input.path    === 'string' ? input.path    :
+      null;
+    <span class="missing-if-branch" title="else path not taken" >E</span>if (raw) {
+      const seg = basename(raw).replace(/\.\w+$/, '').replace(/[*?[\]{}]/g, '');
+      pattern = seg || <span class="branch-1 cbranch-no" title="branch not covered" >null;</span>
+    }
+  } else if (toolName === 'bash') {
+    const cmd = typeof input.command === 'string' ? input.command : <span class="branch-1 cbranch-no" title="branch not covered" >'';</span>
+    const tokens = tokenizeBashCmd(cmd);
+    let foundCmd = false;
+    let foundFileCmd = false;
+    for (let i = 0; i &lt; tokens.length; i++) {
+      const tok = tokens[i];
+&nbsp;
+      // Reset state at command boundaries (pipe, &amp;&amp;, ||, ;)
+      if (tok === '|') { foundCmd = false; foundFileCmd = false; continue; }
+&nbsp;
+      // grep/rg: first non-flag arg after the command is the search pattern
+      if (tok === 'grep' || tok === 'rg') { foundCmd = true; foundFileCmd = false; continue; }
+      if (foundCmd) {
+        <span class="missing-if-branch" title="if path not taken" >I</span>if (tok.startsWith('-')) <span class="cstat-no" title="statement not covered" >continue;</span>
+        pattern = extractLiteralFromRegex(tok);
+        break;
+      }
+&nbsp;
+      // cat / head / tail / less / wc: next non-flag arg is a file path → use basename
+      if (tok === 'cat' || tok === 'head' || tok === 'tail' || tok === 'less' || tok === 'wc') {
+        foundFileCmd = true; foundCmd = false; continue;
+      }
+      if (foundFileCmd) {
+        <span class="missing-if-branch" title="if path not taken" >I</span>if (tok.startsWith('-')) <span class="cstat-no" title="statement not covered" >continue;</span>
+        const ext = extname(tok);
+        if (CODE_EXTENSIONS.has(ext)) {
+          pattern = basename(tok).replace(/\.\w+$/, '');
+          break;
+        }
+        // Non-code file — reset and keep scanning for grep/rg in later segments.
+        foundFileCmd = false;
+        continue;
+      }
+&nbsp;
+      // find -name / -iname: strip glob chars and extension from value
+      <span class="missing-if-branch" title="if path not taken" >I</span>if (tok === 'find') { <span class="cstat-no" title="statement not covered" >foundCmd = false; <span class="cstat-no" title="statement not covered" >f</span>oundFileCmd = false; <span class="cstat-no" title="statement not covered" >c</span>ontinue; }</span>
+      <span class="missing-if-branch" title="if path not taken" >I</span>if ((tok === '-name' || tok === '-iname') &amp;&amp; <span class="branch-2 cbranch-no" title="branch not covered" >tokens[i + 1]) {</span>
+        const <span class="cstat-no" title="statement not covered" >seg = basename(tokens[i + 1]).replace(/\.\w+$/, '').replace(/[*?[\]{}]/g, '');</span>
+<span class="cstat-no" title="statement not covered" >        if (seg.length &gt;= 3) { <span class="cstat-no" title="statement not covered" >pattern = seg; }</span></span>
+<span class="cstat-no" title="statement not covered" >        break;</span>
+      }
+    }
+  } else if (<span class="missing-if-branch" title="else path not taken" >E</span>toolName === 'read') {
+    const raw = typeof input.path === 'string' ? input.path : <span class="branch-1 cbranch-no" title="branch not covered" >null;</span>
+    if (raw &amp;&amp; CODE_EXTENSIONS.has(extname(raw))) {
+      pattern = basename(raw).replace(/\.\w+$/, '');
+    }
+  }
+&nbsp;
+  if (!pattern || pattern.length &lt; 3) return null;
+  return pattern;
+}
+&nbsp;
+/**
+ * Extract { path, pattern } pairs from a read_many tool input.
+ * read_many input is { files: Array&lt;{ path: string, ... }&gt; }.
+ * Falls back to scanning content for @path lines if input lacks a files array.
+ * Returns code files only, deduplicated by basename pattern.
+ */
+export function extractFilesFromReadMany(
+  input: Record&lt;string, unknown&gt;,
+  content: { type: string; text?: string }[],
+): Array&lt;{ path: string; pattern: string }&gt; {
+  const seen = new Set&lt;string&gt;();
+  const results: Array&lt;{ path: string; pattern: string }&gt; = [];
+&nbsp;
+  const add = (filePath: string) =&gt; {
+    const ext = extname(filePath);
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (!CODE_EXTENSIONS.has(ext)) <span class="cstat-no" title="statement not covered" >return;</span>
+    const pattern = basename(filePath).replace(/\.\w+$/, '');
+    <span class="missing-if-branch" title="if path not taken" >I</span>if (pattern.length &lt; 3 || seen.has(pattern)) <span class="cstat-no" title="statement not covered" >return;</span>
+    seen.add(pattern);
+    results.push({ path: filePath, pattern });
+  };
+&nbsp;
+  // Primary: extract from structured input
+  const files = Array.isArray(input.files) ? input.files : <span class="branch-1 cbranch-no" title="branch not covered" >[];</span>
+  for (const f of files) {
+    <span class="missing-if-branch" title="else path not taken" >E</span>if (typeof f === 'object' &amp;&amp; f !== null &amp;&amp; typeof (f as Record&lt;string, unknown&gt;).path === 'string') {
+      add((f as Record&lt;string, unknown&gt;).path as string);
+    }
+  }
+&nbsp;
+  // Fallback: parse @path lines from content (if input was empty/unknown)
+  <span class="missing-if-branch" title="if path not taken" >I</span>if (results.length === 0) {
+    const text = <span class="cstat-no" title="statement not covered" >content.<span class="fstat-no" title="function not covered" >map(c</span> =&gt; <span class="cstat-no" title="statement not covered" >c.text ?? '').</span>join('\n');</span>
+<span class="cstat-no" title="statement not covered" >    for (const line of text.split('\n')) {</span>
+      const m = <span class="cstat-no" title="statement not covered" >line.match(/^@(.+)$/);</span>
+<span class="cstat-no" title="statement not covered" >      if (m) <span class="cstat-no" title="statement not covered" >add(m[1].trim());</span></span>
+    }
+  }
+&nbsp;
+  return results;
+}
+&nbsp;
+/**
+ * Extract up to `limit` unique file basenames (without extension) from
+ * grep-style output lines of the form "path/to/file.ext:lineno:content".
+ * Used to augment secondary context from search results.
+ */
+export function extractFilePatternsFromContent(
+  content: { type: string; text?: string }[],
+  limit = 2,
+): string[] {
+  const text = content.map(c =&gt; c.text ?? <span class="branch-1 cbranch-no" title="branch not covered" >'').</span>join('\n');
+  const seen = new Set&lt;string&gt;();
+  const results: string[] = [];
+  for (const line of text.split('\n')) {
+    // Match "some/path/File.ext:digits:" at the start of a line
+    const m = line.match(/^([^\n:]+\.\w+):\d+:/);
+    if (!m) continue;
+    const base = basename(m[1]).replace(/\.\w+$/, '');
+    if (base.length &gt;= 3 &amp;&amp; !seen.has(base)) {
+      seen.add(base);
+      results.push(base);
+    }
+    if (results.length &gt;= limit) break;
+  }
+  return results;
+}
+&nbsp;
+/**
+ * Validate that a file path stays within cwd (path traversal guard).
+ * Returns the resolved absolute path, or null if it escapes cwd.
+ */
+export function safeResolvePath(file: string, cwd: string): string | null {
+  const resolved = resolve(cwd, file);
+  return resolved.startsWith(cwd + sep) || resolved === cwd ? resolved : null;
+}
+&nbsp;
+export function toRepoRelativePath(file: string, repoRoot: string): string | null {
+  const resolved = safeResolvePath(file, repoRoot);
+  if (!resolved) return null;
+  return relative(repoRoot, resolved) || <span class="branch-1 cbranch-no" title="branch not covered" >'.';</span>
+}
+&nbsp;
+export function validateRepoRelativePath(file: string): string | null {
+  const normalized = posix.normalize(file.replaceAll('\\', '/'));
+  if (normalized === '.' || normalized === '') return null;
+  if (normalized.startsWith('../') || normalized === '..' || normalized.startsWith('/')) return null;
+  return normalized;
+}
+&nbsp;
+/**
+ * Spawn `gitnexus augment &lt;pattern&gt;` and return its output.
+ * gitnexus augment writes results to stderr (not stdout).
+ * Used by the tool_result hook — not by registered tools (those use mcp-client).
+ * Returns output trimmed and truncated to MAX_OUTPUT_CHARS, or "" on any error.
+ */
+export async function <span class="fstat-no" title="function not covered" >runAugment(p</span>attern: string, cwd: string): Promise&lt;string&gt; {
+<span class="cstat-no" title="statement not covered" >  return new <span class="fstat-no" title="function not covered" >Promise((r</span>esolve_) =&gt; {</span>
+    // gitnexus augment writes results to stderr (not stdout)
+    let output = <span class="cstat-no" title="statement not covered" >'';</span>
+    let done = <span class="cstat-no" title="statement not covered" >false;</span>
+&nbsp;
+    const [bin, ...baseArgs] = <span class="cstat-no" title="statement not covered" >gitnexusCmd;</span>
+    const <span class="cstat-no" title="statement not covered" >proc = spawn(bin, [...baseArgs, 'augment', pattern], {</span>
+      cwd,
+      stdio: ['ignore', 'ignore', 'pipe'],
+      env: spawnEnv,
+    });
+&nbsp;
+    const timer = <span class="cstat-no" title="statement not covered" ><span class="fstat-no" title="function not covered" >setTimeout(() =&gt; {</span></span>
+<span class="cstat-no" title="statement not covered" >      if (!done) {</span>
+<span class="cstat-no" title="statement not covered" >        done = true;</span>
+<span class="cstat-no" title="statement not covered" >        proc.kill('SIGTERM');</span>
+<span class="cstat-no" title="statement not covered" >        resolve_('');</span>
+      }
+    }, augmentTimeout);
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    proc.stderr!.on(<span class="fstat-no" title="function not covered" >'data', (c</span>hunk: { toString(): string }) =&gt; { <span class="cstat-no" title="statement not covered" >output += chunk.toString(); });</span></span>
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    proc.on(<span class="fstat-no" title="function not covered" >'close', (c</span>ode: number | null) =&gt; {</span>
+<span class="cstat-no" title="statement not covered" >      if (done) <span class="cstat-no" title="statement not covered" >return;</span></span>
+<span class="cstat-no" title="statement not covered" >      done = true;</span>
+<span class="cstat-no" title="statement not covered" >      clearTimeout(timer);</span>
+<span class="cstat-no" title="statement not covered" >      resolve_(code === 0 ? output.trim().slice(0, MAX_OUTPUT_CHARS) : '');</span>
+    });
+&nbsp;
+<span class="cstat-no" title="statement not covered" >    proc.on(<span class="fstat-no" title="function not covered" >'error', () =&gt; {</span></span>
+<span class="cstat-no" title="statement not covered" >      if (!done) { <span class="cstat-no" title="statement not covered" >done = true; <span class="cstat-no" title="statement not covered" >c</span>learTimeout(timer); <span class="cstat-no" title="statement not covered" >r</span>esolve_(''); }</span></span>
+    });
+  });
+}
+&nbsp;</pre></td></tr></table></pre>
+                <div class='push'></div><!-- for sticky footer -->
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+            <div class='footer quiet pad2 space-top1 center small'>
+                Code coverage generated by
+                <a href="https://istanbul.js.org/" target="_blank" rel="noopener noreferrer">istanbul</a>
+                at 2026-05-03T18:51:43.670Z
+            </div>
+        <script src="../prettify.js"></script>
+        <script>
+            window.onload = function () {
+                prettyPrint();
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