pi-daddy 0.27.0 → 0.27.1

package/dist/init.d.ts

@@ -1,9 +1,9 @@
 /**
  * `pi-daddy init` — scaffold a governed project from the skill packages already installed (B2, P3).
  *
- * Today an operator wanting to govern a package of skills must, per skill: create a directory, copy the
- * body, hand-write frontmatter, choose a capability set with no guidance, and assemble a `PI_GRANTS_GRANT`
- * string by hand. Seven times, for `principal-pi-skills`. This does the mechanical parts.
+ * Legacy unregistered npm packages can be scaffolded per skill: create a directory, copy the
+ * body and declaration copies plus a starting `PI_GRANTS_GRANT`. Configured enabled Pi resources
+ * are referenced where installed instead (ADR-0074); no competing .pi/skills copy is created.
  *
  * **The line it does not cross, and the reason this module exists at all:** `init` writes files an operator
  * then **reviews, edits and commits**. It never chooses a ceiling. A skill that declares `allowed-tools` is
@@ -23,23 +23,9 @@
  */
 import type { Capability } from "./resolve.ts";
 import type { SkillPackage } from "./skill-packages.ts";
-/** Why a discovered skill is not authorised in the generated grant. `null` means it is. */
 /**
- * How many of `from`'s skills actually **declare** a ceiling.
- *
- * Exported because the number is printed to an operator and was wrong: `cli.ts` filtered on
- * `withheld === null`, which is false for all three `WithholdReason`s — so a skill that declares
- * `allowed-tools` perfectly well and merely needs a withheld capability counted as not declaring one.
- * Against `principal-pi-skills` that printed *"7 skill(s), 3 declaring allowed-tools"* while all seven
- * declared. R-28's shape: a diagnostic disagreeing with the thing it describes.
- *
- * **It was invisible until the integration worked.** Before ceilings shipped, none of the seven declared
- * and the line read *"0 declaring"* — correct by coincidence, for the wrong reason. A count that is right
- * only while the interesting case is absent is the kind this project keeps finding.
- *
- * `undeclared` is the only reason that means "did not declare". `pattern` declared something this package
- * refuses to reinterpret, and `needs-withheld` declared something fine that the operator must opt into —
- * both are declarations.
+ * Count declarations, not authorizations (R-73). Both pattern and needs-withheld mean the skill
+ * declared a ceiling; only undeclared means it did not. The CLI must report the same distinction.
  */
 export declare function countDeclaring(skills: PlannedSkill[], from: string): number;
 export type WithholdReason = "undeclared" | "pattern" | "needs-withheld";
@@ -49,6 +35,8 @@ export interface PlannedSkill {
     from: string;
     sourcePath: string;
     targetPath: string;
+    /** Configured skills stay at their installed/local source, including when --force is used. */
+    referenced?: boolean;
     /** Exactly what would be written — the file verbatim, or the file plus a commented note. */
     content: string;
     /** The declared ceiling, empty when the declaration is absent or unusable. */

package/dist/init.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../src/init.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AASH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC/C,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAExD;;;GAGG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,YAAY,EAAE,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAE3E;AAED,MAAM,MAAM,cAAc,GAAG,YAAY,GAAG,SAAS,GAAG,gBAAgB,CAAC;AAEzE,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,qDAAqD;IACrD,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,8FAA8F;IAC9F,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,4FAA4F;IAC5F,OAAO,EAAE,MAAM,CAAC;IAChB,8EAA8E;IAC9E,OAAO,EAAE,UAAU,EAAE,CAAC;IACtB,QAAQ,EAAE,cAAc,GAAG,IAAI,CAAC;IAChC,4FAA4F;IAC5F,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,YAAY,EAAE,CAAC;IACvB,0GAA0G;IAC1G,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,mEAAmE;IACnE,KAAK,EAAE,UAAU,EAAE,CAAC;IACpB,4FAA4F;IAC5F,oBAAoB,EAAE,GAAG,CAAC,UAAU,EAAE,MAAM,EAAE,CAAC,CAAC;IAChD,0GAA0G;IAC1G,kBAAkB,EAAE,UAAU,EAAE,CAAC;IACjC,YAAY,EAAE,MAAM,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,uGAAuG;IACvG,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAyBD;;;;;;;;GAQG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,IAAI,GAAE,MAAM,EAAgB,GAAG,MAAM,CASrG;AAUD;;;;;;;GAOG;AACH,wBAAgB,QAAQ,CACtB,QAAQ,EAAE,YAAY,EAAE,EACxB,GAAG,EAAE,MAAM;AACX;;;;;;;;GAQG;AACH,sBAAsB,GAAE,SAAS,MAAM,EAAO,GAC7C,QAAQ,CA+IV;AAED,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,0FAA0F;IAC1F,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,MAAM,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;CAC3C;AAiDD;;;;;;;;;;;;GAYG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,QAAQ,EAAE,OAAO,GAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAA;CAAO,GAAG,OAAO,CAAC,WAAW,CAAC,CA2BvG"}

package/dist/init.js

@@ -1,9 +1,9 @@
 /**
  * `pi-daddy init` — scaffold a governed project from the skill packages already installed (B2, P3).
  *
- * Today an operator wanting to govern a package of skills must, per skill: create a directory, copy the
- * body, hand-write frontmatter, choose a capability set with no guidance, and assemble a `PI_GRANTS_GRANT`
- * string by hand. Seven times, for `principal-pi-skills`. This does the mechanical parts.
+ * Legacy unregistered npm packages can be scaffolded per skill: create a directory, copy the
+ * body and declaration copies plus a starting `PI_GRANTS_GRANT`. Configured enabled Pi resources
+ * are referenced where installed instead (ADR-0074); no competing .pi/skills copy is created.
  *
  * **The line it does not cross, and the reason this module exists at all:** `init` writes files an operator
  * then **reviews, edits and commits**. It never chooses a ceiling. A skill that declares `allowed-tools` is
@@ -28,23 +28,9 @@ import { ceilingForDefinition } from "./definitions.js";
 import { runWithFinalizers } from "./finalization.js";
 import { ALWAYS_LIVE, assertGrantIsWritable, isLiveByDefault, renderGrantEnv } from "./grant-env.js";
 import { PI_BUILTIN_TOOLS } from "./pi-tools.js";
-/** Why a discovered skill is not authorised in the generated grant. `null` means it is. */
 /**
- * How many of `from`'s skills actually **declare** a ceiling.
- *
- * Exported because the number is printed to an operator and was wrong: `cli.ts` filtered on
- * `withheld === null`, which is false for all three `WithholdReason`s — so a skill that declares
- * `allowed-tools` perfectly well and merely needs a withheld capability counted as not declaring one.
- * Against `principal-pi-skills` that printed *"7 skill(s), 3 declaring allowed-tools"* while all seven
- * declared. R-28's shape: a diagnostic disagreeing with the thing it describes.
- *
- * **It was invisible until the integration worked.** Before ceilings shipped, none of the seven declared
- * and the line read *"0 declaring"* — correct by coincidence, for the wrong reason. A count that is right
- * only while the interesting case is absent is the kind this project keeps finding.
- *
- * `undeclared` is the only reason that means "did not declare". `pattern` declared something this package
- * refuses to reinterpret, and `needs-withheld` declared something fine that the operator must opt into —
- * both are declarations.
+ * Count declarations, not authorizations (R-73). Both pattern and needs-withheld mean the skill
+ * declared a ceiling; only undeclared means it did not. The CLI must report the same distinction.
  */
 export function countDeclaring(skills, from) {
     return skills.filter((s) => s.from === from && s.withheld !== "undeclared").length;
@@ -142,7 +128,8 @@ registeredWorkspaceIds = []) {
                 name,
                 from: `${pkg.name}@${pkg.version}`,
                 sourcePath: skill.path,
-                targetPath: join(cwd, ".pi", "skills", name, "SKILL.md"),
+                targetPath: skill.referenced ? skill.path : join(cwd, ".pi", "skills", name, "SKILL.md"),
+                referenced: skill.referenced,
                 content: withPlaceholder(skill.text, withheld === null, note),
                 ceiling: ceiling.capabilities,
                 withheld,
@@ -323,6 +310,8 @@ export async function applyInit(plan, options = {}) {
     }
     const force = options.force === true;
     for (const skill of plan.skills) {
+        if (skill.referenced)
+            continue;
         if (force)
             await replace(skill.targetPath, skill.content, outcome);
         else

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package/dist/skill-packages.d.ts

@@ -1,28 +1,8 @@
 /**
- * Which installed npm packages ship `SKILL.md` definitions — read from their own manifests.
- *
- * `pi-daddy init` scaffolds a governed project from whatever skill packages are already installed, and
- * this is how it finds them: **a package declares its skills in `package.json`'s `pi.skills` array**, which
- * is pi's own convention and how pi itself loads them. Measured against `principal-pi-skills@2.3.1`:
- *
- * ```json
- * "pi": { "skills": ["./decide", "./architect", "./plan", "./build", "./review", "./debug", "./git-ops"] }
- * ```
- *
- * **A declaration, never a heuristic.** Walking `node_modules` looking for files called `SKILL.md` would
- * find a package's test fixtures, its examples, and its vendored copies of someone else's skills — and
- * would then offer to install them as spawnable sub-agents. A package that says which of its files are
- * skills has said so on purpose, and that is the only list this reads.
- *
- * What it deliberately does NOT do: scan `~/.pi/agent/skills/`. Definitions already in a skill root are
- * discovered by `loadDefinitions` and governed as they stand; copying them into a project would duplicate
- * them under a name that shadows the original (project wins on collision), which is a change nobody asked
- * for.
- *
- * **Everything read here comes from a third party**, so this module is also where the refusals live: a
- * name, a declared capability id, or a path that cannot safely be written into a generated file is refused
- * with a reason rather than passed on (R-77, R-78, R-80). `init` generates a shell file an operator
- * `source`s; the only strings that may reach it are ones that survived a whitelist here.
+ * Setup discovers enabled Pi resources in place through its package resolver. Configured packages
+ * are never copied into another autoload root. For legacy npm installs unregistered with Pi only,
+ * the explicit package.json pi.skills declaration remains a scaffold source (ADR-0074).
+ * Names, ceilings and bytes are checked before they can enter the generated shell grant.
  */
 import { type SkillDefinition } from "./definitions.ts";
 import { isSafeCapability } from "./capabilities.ts";
@@ -31,6 +11,8 @@ export interface DiscoveredSkill {
     /** The file verbatim. `init` copies it rather than regenerating it, so nothing is lost in a round trip. */
     text: string;
     path: string;
+    /** Already enabled by Pi; setup must reference it rather than making a competing copy. */
+    referenced?: boolean;
 }
 /** Why a declared skill was refused before it could be planned. Each has a different fix. */
 export type RefusalReason = 

package/dist/skill-packages.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"skill-packages.d.ts","sourceRoot":"","sources":["../src/skill-packages.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AAKH,OAAO,EAA8C,KAAK,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAGpG,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAErD,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,eAAe,CAAC;IAC5B,2GAA2G;IAC3G,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,6FAA6F;AAC7F,MAAM,MAAM,aAAa;AACvB,uFAAuF;AACrF,aAAa;AACf,yFAAyF;GACvF,mBAAmB;AACrB,yGAAyG;GACvG,UAAU;AACZ,iFAAiF;GAC/E,UAAU,CAAC;AAEf,MAAM,WAAW,YAAY;IAC3B,uFAAuF;IACvF,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,aAAa,CAAC;IACtB,sDAAsD;IACtD,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAED,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,yGAAyG;IACzG,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,uGAAuG;IACvG,OAAO,EAAE,YAAY,EAAE,CAAC;IACxB,MAAM,EAAE,eAAe,EAAE,CAAC;CAC3B;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEhD;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAGH,OAAO,EAAE,gBAAgB,EAAE,CAAC;AA+D5B,2GAA2G;AAC3G,wBAAsB,gBAAgB,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CAkCvF;AAED;;;;;;GAMG;AACH;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAGvD;AAED,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC,CAgBhF"}
+{"version":3,"file":"skill-packages.d.ts","sourceRoot":"","sources":["../src/skill-packages.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,EAA8C,KAAK,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAIpG,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAErD,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,eAAe,CAAC;IAC5B,2GAA2G;IAC3G,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,0FAA0F;IAC1F,UAAU,CAAC,EAAE,OAAO,CAAC;CACtB;AAED,6FAA6F;AAC7F,MAAM,MAAM,aAAa;AACvB,uFAAuF;AACrF,aAAa;AACf,yFAAyF;GACvF,mBAAmB;AACrB,yGAAyG;GACvG,UAAU;AACZ,iFAAiF;GAC/E,UAAU,CAAC;AAEf,MAAM,WAAW,YAAY;IAC3B,uFAAuF;IACvF,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,aAAa,CAAC;IACtB,sDAAsD;IACtD,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAED,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,yGAAyG;IACzG,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,uGAAuG;IACvG,OAAO,EAAE,YAAY,EAAE,CAAC;IACxB,MAAM,EAAE,eAAe,EAAE,CAAC;CAC3B;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEhD;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAGH,OAAO,EAAE,gBAAgB,EAAE,CAAC;AA+D5B,2GAA2G;AAC3G,wBAAsB,gBAAgB,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CAkCvF;AAED;;;;;;GAMG;AACH;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,EAAE,CAGvD;AAED,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC,CA0DhF"}

package/dist/skill-packages.js

@@ -1,33 +1,14 @@
 /**
- * Which installed npm packages ship `SKILL.md` definitions — read from their own manifests.
- *
- * `pi-daddy init` scaffolds a governed project from whatever skill packages are already installed, and
- * this is how it finds them: **a package declares its skills in `package.json`'s `pi.skills` array**, which
- * is pi's own convention and how pi itself loads them. Measured against `principal-pi-skills@2.3.1`:
- *
- * ```json
- * "pi": { "skills": ["./decide", "./architect", "./plan", "./build", "./review", "./debug", "./git-ops"] }
- * ```
- *
- * **A declaration, never a heuristic.** Walking `node_modules` looking for files called `SKILL.md` would
- * find a package's test fixtures, its examples, and its vendored copies of someone else's skills — and
- * would then offer to install them as spawnable sub-agents. A package that says which of its files are
- * skills has said so on purpose, and that is the only list this reads.
- *
- * What it deliberately does NOT do: scan `~/.pi/agent/skills/`. Definitions already in a skill root are
- * discovered by `loadDefinitions` and governed as they stand; copying them into a project would duplicate
- * them under a name that shadows the original (project wins on collision), which is a change nobody asked
- * for.
- *
- * **Everything read here comes from a third party**, so this module is also where the refusals live: a
- * name, a declared capability id, or a path that cannot safely be written into a generated file is refused
- * with a reason rather than passed on (R-77, R-78, R-80). `init` generates a shell file an operator
- * `source`s; the only strings that may reach it are ones that survived a whitelist here.
+ * Setup discovers enabled Pi resources in place through its package resolver. Configured packages
+ * are never copied into another autoload root. For legacy npm installs unregistered with Pi only,
+ * the explicit package.json pi.skills declaration remains a scaffold source (ADR-0074).
+ * Names, ceilings and bytes are checked before they can enter the generated shell grant.
  */
 import { readdir, readFile, realpath } from "node:fs/promises";
 import { homedir } from "node:os";
 import { join, resolve, sep } from "node:path";
 import { ceilingForDefinition, parseSkillDefinition } from "./definitions.js";
+import { resolveSkillResources, skillResourceName } from "./skill-resources.js";
 import { WILDCARD } from "./pi-tools.js";
 import { AGENT_WILDCARD, WORKSPACE_WILDCARD } from "./resolve.js";
 import { isSafeCapability } from "./capabilities.js";
@@ -209,21 +190,81 @@ export function skillPackageRoots(cwd) {
     return [join(cwd, "node_modules"), join(agentDir, "npm", "node_modules")];
 }
 export async function discoverSkillPackages(cwd) {
+    const resolved = await resolveSkillResources(cwd);
+    const packages = [];
+    const seenSkills = new Set();
+    const runtimeNames = new Set(resolved.skills.map(s => skillResourceName(s.path)));
+    const configuredRoots = new Set(resolved.configured.flatMap(p => p.installedPath ? [resolve(p.installedPath)] : []));
+    const configuredNames = new Set(resolved.configured.flatMap(p => {
+        if (!p.source.startsWith("npm:"))
+            return [];
+        const spec = p.source.slice(4);
+        const versionAt = spec.indexOf("@", 1);
+        return [versionAt < 0 ? spec : spec.slice(0, versionAt)];
+    }));
+    for (const root of configuredRoots) {
+        try {
+            configuredNames.add(JSON.parse(await readFile(join(root, "package.json"), "utf8")).name);
+        }
+        catch { /* absent */ }
+    }
+    for (const resource of resolved.skills) {
+        const bytes = await readFile(resource.path).catch(() => null);
+        if (bytes === null)
+            continue;
+        const text = bytes.toString("utf8");
+        const resourceName = skillResourceName(resource.path);
+        if (seenSkills.has(resourceName))
+            continue;
+        seenSkills.add(resourceName);
+        let name = resource.metadata.source;
+        let version = "local";
+        if (resource.metadata.origin === "package" && resource.metadata.baseDir) {
+            try {
+                const manifest = JSON.parse(await readFile(join(resource.metadata.baseDir, "package.json"), "utf8"));
+                name = manifest.name ?? name;
+                version = manifest.version ?? version;
+            }
+            catch { /* the resource can be used without optional display metadata */ }
+        }
+        else
+            name = `${resource.metadata.scope} skills`;
+        let pkg = packages.find(p => p.name === name && p.version === version);
+        if (!pkg) {
+            pkg = { name, version, skills: [], refused: [], unreadable: [] };
+            packages.push(pkg);
+        }
+        if (!Buffer.from(text, "utf8").equals(bytes)) {
+            pkg.refused.push({ subject: resourceName, reason: "not-utf8", detail: [] });
+            continue;
+        }
+        const definition = parseSkillDefinition(resource.path, text);
+        if (!definition)
+            continue;
+        const skill = { definition, text, path: resource.path, referenced: true };
+        const refusal = refusalFor(skill);
+        if (refusal)
+            pkg.refused.push(refusal);
+        else
+            pkg.skills.push(skill);
+    }
+    // Compatibility for npm installs that were never registered with Pi. Runtime discovery never scans
+    // node_modules. A configured package (including one disabled by a filter) must not re-enter here.
     const dirs = [];
-    const seenNames = new Set();
     for (const root of skillPackageRoots(cwd))
         await collectFrom(root, dirs);
-    const packages = [];
+    const seenNames = new Set(packages.map(p => p.name));
     for (const dir of dirs) {
+        if (configuredRoots.has(resolve(dir)))
+            continue;
         const found = await readSkillPackage(dir);
-        // First root wins on a name collision: the project's pinned copy outranks the machine-wide one, and
-        // silently preferring the other would make a committed lockfile stop meaning anything.
-        if (found && !seenNames.has(found.name)) {
-            seenNames.add(found.name);
-            packages.push(found);
-        }
+        if (!found || configuredNames.has(found.name) || seenNames.has(found.name))
+            continue;
+        seenNames.add(found.name);
+        found.skills = found.skills.filter(skill => !runtimeNames.has(skill.definition.name));
+        packages.push(found);
     }
-    return packages.sort((a, b) => a.name.localeCompare(b.name));
+    return packages;
 }
 /** Append every package directory under one `node_modules`, scoped packages included. */
 async function collectFrom(root, dirs) {

package/dist/skill-packages.js.map

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package/dist/skill-resources.d.ts

@@ -0,0 +1,21 @@
+interface SkillResources {
+    skills: {
+        path: string;
+        enabled: boolean;
+        metadata: {
+            source: string;
+            scope: string;
+            origin: string;
+            baseDir?: string;
+        };
+    }[];
+    configured: {
+        source: string;
+        scope: string;
+        installedPath?: string;
+    }[];
+}
+export declare function skillResourceName(path: string): string;
+export declare function resolveSkillResources(cwd: string): Promise<SkillResources>;
+export {};
+//# sourceMappingURL=skill-resources.d.ts.map

package/dist/skill-resources.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"skill-resources.d.ts","sourceRoot":"","sources":["../src/skill-resources.ts"],"names":[],"mappings":"AAKA,UAAU,cAAc;IACtB,MAAM,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,OAAO,CAAC;QAAC,QAAQ,EAAE;YAAE,MAAM,EAAE,MAAM,CAAC;YAAC,KAAK,EAAE,MAAM,CAAC;YAAC,MAAM,EAAE,MAAM,CAAC;YAAC,OAAO,CAAC,EAAE,MAAM,CAAA;SAAE,CAAA;KAAE,EAAE,CAAC;IAC5H,UAAU,EAAE;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAC;QAAC,aAAa,CAAC,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;CACzE;AAED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAItD;AAED,wBAAsB,qBAAqB,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC,CA+BhF"}

package/dist/skill-resources.js

@@ -0,0 +1,52 @@
+/** Read Pi's configured resource surface without locks, installs, extension execution or model calls. */
+import { readFileSync, statSync } from "node:fs";
+import { join } from "node:path";
+import { DefaultPackageManager, getAgentDir, SettingsManager } from "@earendil-works/pi-coding-agent";
+export function skillResourceName(path) {
+    const parts = path.split(/[\\/]/);
+    const file = parts.at(-1) ?? "";
+    return file.toLowerCase() === "skill.md" ? parts.at(-2) ?? "" : file.replace(/\.md$/i, "");
+}
+export async function resolveSkillResources(cwd) {
+    const agentDir = getAgentDir();
+    const settingsManager = SettingsManager.fromStorage({
+        withLock(scope, read) {
+            const path = scope === "global" ? join(agentDir, "settings.json") : join(cwd, ".pi", "settings.json");
+            let text;
+            try {
+                text = readFileSync(path, "utf8");
+            }
+            catch (error) {
+                if (error.code !== "ENOENT")
+                    throw error;
+            }
+            // This storage is intentionally read-only: no lock files or migrated settings are persisted.
+            read(text);
+        },
+    });
+    const errors = settingsManager.drainErrors();
+    if (errors.length)
+        throw new Error(`Cannot discover skills: ${errors.map(e => `${e.scope} settings: ${e.error.message}`).join("; ")}`);
+    const manager = new DefaultPackageManager({ cwd, agentDir, settingsManager });
+    const resolved = await manager.resolve(async () => "skip");
+    // Pi has already applied package identity, scope, manifest and settings filters and precedence.
+    const seen = new Set();
+    const skills = resolved.skills.filter(resource => resource.enabled).flatMap(resource => {
+        try {
+            const path = statSync(resource.path).isDirectory() ? join(resource.path, "SKILL.md") : resource.path;
+            return statSync(path).isFile() ? [{ ...resource, path }] : [];
+        }
+        catch {
+            return [];
+        }
+    }).filter(resource => {
+        // Reserve identity before parsing: a malformed local override cannot reveal a wider package ceiling.
+        const name = skillResourceName(resource.path);
+        if (seen.has(name))
+            return false;
+        seen.add(name);
+        return true;
+    });
+    return { skills, configured: manager.listConfiguredPackages() };
+}
+//# sourceMappingURL=skill-resources.js.map

package/dist/skill-resources.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"skill-resources.js","sourceRoot":"","sources":["../src/skill-resources.ts"],"names":[],"mappings":"AAAA,yGAAyG;AACzG,OAAO,EAAE,YAAY,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AACjD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,qBAAqB,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,iCAAiC,CAAC;AAOtG,MAAM,UAAU,iBAAiB,CAAC,IAAY;IAC5C,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;IAClC,MAAM,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IAChC,OAAO,IAAI,CAAC,WAAW,EAAE,KAAK,UAAU,CAAC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;AAC7F,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,qBAAqB,CAAC,GAAW;IACrD,MAAM,QAAQ,GAAG,WAAW,EAAE,CAAC;IAC/B,MAAM,eAAe,GAAG,eAAe,CAAC,WAAW,CAAC;QAClD,QAAQ,CAAC,KAAK,EAAE,IAAI;YAClB,MAAM,IAAI,GAAG,KAAK,KAAK,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,KAAK,EAAE,eAAe,CAAC,CAAC;YACtG,IAAI,IAAwB,CAAC;YAC7B,IAAI,CAAC;gBAAC,IAAI,GAAG,YAAY,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;YAAC,CAAC;YAC1C,OAAO,KAAK,EAAE,CAAC;gBAAC,IAAK,KAA+B,CAAC,IAAI,KAAK,QAAQ;oBAAE,MAAM,KAAK,CAAC;YAAC,CAAC;YACtF,6FAA6F;YAC7F,IAAI,CAAC,IAAI,CAAC,CAAC;QACb,CAAC;KACF,CAAC,CAAC;IACH,MAAM,MAAM,GAAG,eAAe,CAAC,WAAW,EAAE,CAAC;IAC7C,IAAI,MAAM,CAAC,MAAM;QAAE,MAAM,IAAI,KAAK,CAAC,2BAA2B,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,KAAK,cAAc,CAAC,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACvI,MAAM,OAAO,GAAG,IAAI,qBAAqB,CAAC,EAAE,GAAG,EAAE,QAAQ,EAAE,eAAe,EAAE,CAAC,CAAC;IAC9E,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,OAAO,CAAC,KAAK,IAAI,EAAE,CAAC,MAAM,CAAC,CAAC;IAC3D,gGAAgG;IAChG,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAC;IAC/B,MAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE;QACrF,IAAI,CAAC;YACH,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC;YACrG,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAChE,CAAC;QAAC,MAAM,CAAC;YAAC,OAAO,EAAE,CAAC;QAAC,CAAC;IACxB,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,EAAE;QACnB,qGAAqG;QACrG,MAAM,IAAI,GAAG,iBAAiB,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;QAC9C,IAAI,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,OAAO,KAAK,CAAC;QACjC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACf,OAAO,IAAI,CAAC;IACd,CAAC,CAAC,CAAC;IACH,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,OAAO,CAAC,sBAAsB,EAAE,EAAE,CAAC;AAClE,CAAC"}

package/extensions/init-command.ts

@@ -44,8 +44,8 @@ export async function runInit(
   const packages = await discoverSkillPackages(ctx.cwd);
   if (packages.length === 0) {
     ctx.ui.notify(
-      "grants: no packages declaring skills found in node_modules. Install one — e.g. " +
-        "`npm i principal-pi-skills` — then run /grants init again.",
+      "grants: no enabled configured skills or unregistered npm skill packages found. Install and enable one — e.g. " +
+        "`pi install npm:principal-pi-skills` — then run /grants init again.",
       "warning",
     );
     return;
@@ -55,6 +55,7 @@ export async function runInit(
   const outcome = await applyInit(plan);
   const lines = [
     `grants: ${plan.skills.length} definition(s) from ${packages.map((p) => `${p.name}@${p.version}`).join(", ")}`,
+    `  using ${plan.skills.filter(s => s.referenced).length} enabled definition(s) in place; no copies`,
     `  wrote ${outcome.written.length}, kept ${outcome.kept.length} already present` +
       `${outcome.failed.length > 0 ? `, ${outcome.failed.length} FAILED` : ""}`,
   ];

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "pi-daddy",
-  "version": "0.27.0",
+  "version": "0.27.1",
   "description": "Capability governance for pi sub-agents: spawn Agent Skills (SKILL.md) definitions whose allowed-tools becomes a grant that can only narrow going down a delegation tree, enforced by pi's own --tools allowlist, with an append-only ledger.",
   "keywords": [
     "pi-package",

package/src/catalog.ts

@@ -18,8 +18,8 @@
  * supported for hand-authored grants; `deriveOwnGrant` already matches them by bare name.
  */
 
-import { readdir, stat } from "node:fs/promises";
-import { homedir } from "node:os";
+import { getAgentDir } from "@earendil-works/pi-coding-agent";
+import { resolveSkillResources, skillResourceName } from "./skill-resources.ts";
 import { join } from "node:path";
 import { loadDefinitions, type SkillDefinition } from "./definitions.ts";
 import { PI_BUILTIN_TOOLS, WILDCARD } from "./pi-tools.ts";
@@ -55,45 +55,15 @@ export function classifyToolNames(observed: string[]): CatalogEntry[] {
 
 /** Skill roots pi discovers, project first. */
 export function skillDirs(cwd: string): string[] {
-  return [join(cwd, ".pi", "skills"), join(homedir(), ".pi", "agent", "skills")];
+  return [join(cwd, ".pi", "skills"), join(getAgentDir(), "skills")];
 }
 
-/**
- * Discover skills: a directory containing `SKILL.md` is one skill named after the directory; a top-level
- * `.md` file is a skill named after the file. Mirrors pi's documented convention.
- *
- * Directories are not descended into beyond one level, matching pi's rule that a directory containing
- * `SKILL.md` is a single skill rather than a tree to explore.
- */
+/** Enumerate the same enabled Pi resource paths as definitions, preserving resolver precedence. */
 export async function loadSkills(cwd: string): Promise<CatalogEntry[]> {
   const found = new Map<string, CatalogEntry>();
-  for (const dir of skillDirs(cwd)) {
-    let names: string[];
-    try {
-      names = await readdir(dir);
-    } catch {
-      continue; // absent skill root is normal
-    }
-    for (const name of names.sort()) {
-      const path = join(dir, name);
-      try {
-        const info = await stat(path);
-        if (info.isDirectory()) {
-          const inner = await readdir(path).catch(() => [] as string[]);
-          if (inner.includes("SKILL.md") && !found.has(name)) {
-            found.set(name, { capability: `skill:${name}`, kind: "skill", source: path });
-          }
-        } else if (name.endsWith(".md")) {
-          const skill = name.replace(/\.md$/, "");
-          if (!found.has(skill)) {
-            found.set(skill, { capability: `skill:${skill}`, kind: "skill", source: path });
-          }
-        }
-      } catch {
-        // An unreadable entry is simply not catalogued; it therefore cannot be granted, which is the
-        // fail-closed direction.
-      }
-    }
+  for (const { path } of (await resolveSkillResources(cwd)).skills) {
+    const name = skillResourceName(path);
+    if (!found.has(name)) found.set(name, { capability: `skill:${name}`, kind: "skill", source: path });
   }
   return [...found.values()];
 }

package/src/cli.ts

@@ -28,7 +28,7 @@ import { panelText } from "./daily-panel.ts";
 const USAGE = `pi-daddy — capability governance for pi sub-agents
 
 Usage:
-  pi-daddy init [--force] [--dir <path>]   scaffold .pi/skills/ and .pi/grants.env from installed
+  pi-daddy init [--force] [--dir <path>]   prepare .pi/grants.env from enabled installed
                                            packages that declare skills (package.json "pi": {"skills": …})
   pi-daddy work add --id <id> --outcome <text> [--dir <path>]
                                            declare one current obligation for ordinary delegation
@@ -39,12 +39,12 @@ Usage:
   pi-daddy guide | current               installed product guide / current requirement register
   pi-daddy --help | --version
 
-init copies each declared SKILL.md into .pi/skills/ and writes a grant naming exactly what those files
-declare. It never chooses a ceiling: a skill declaring no \`allowed-tools\` is copied with a commented
-placeholder and stays unspawnable until you fill it in. Capabilities that can change your machine
+init references skills already enabled in Pi at their installed or local paths. Legacy unregistered npm
+skills are copied into .pi/skills/. It never chooses a ceiling: missing or unusable \`allowed-tools\`
+stays unspawnable. Capabilities that can change your machine
 (bash, write, edit) are written COMMENTED — uncomment them deliberately. Review the files, then commit.
 
-  --force   rewrite the SKILL.md copies that already exist. This DISCARDS any \`allowed-tools\` you added.
+  --force   rewrite legacy unregistered npm SKILL.md copies that already exist. This DISCARDS any \`allowed-tools\` you added.
             It never rewrites .pi/grants.env — delete that file if you want it regenerated.`;
 
 export interface ParsedArgs {
@@ -131,7 +131,7 @@ async function init(cwd: string, force: boolean): Promise<number> {
     // `pi install npm:principal-pi-skills`, which installs to the agent root, was told to install a package
     // they had already installed (R-75).
     console.log(
-      `pi-daddy init: no installed package declares skills (a package.json "pi": {"skills": [...]} ` +
+      `pi-daddy init: no enabled configured skills or unregistered npm package declares skills (a package.json "pi": {"skills": [...]} ` +
         `field). Nothing to scaffold.\n\nLooked in:\n` +
         skillPackageRoots(cwd).map((r) => `  ${r}\n`).join("") +
         `\n  pi install npm:principal-pi-skills    # seven skills, and registers it with pi\n` +
@@ -171,7 +171,7 @@ async function init(cwd: string, force: boolean): Promise<number> {
   // `--force` is destructive and says so at the moment it acts, not only in `--help` — which is the one
   // place the operator running the command is not reading.
   if (force) {
-    const existing = plan.skills.length;
+    const existing = plan.skills.filter(s => !s.referenced).length;
     console.log(
       `\n--force: rewriting up to ${existing} SKILL.md cop${existing === 1 ? "y" : "ies"} from the installed\n` +
         `packages. Any \`allowed-tools\` you wrote in them is DISCARDED. .pi/grants.env is never rewritten.`,
@@ -180,6 +180,7 @@ async function init(cwd: string, force: boolean): Promise<number> {
 
   const outcome = await applyInit(plan, { force });
   const short = (path: string) => relative(cwd, path) || path;
+  for (const skill of plan.skills.filter(s => s.referenced)) console.log(`using ${short(skill.sourcePath)} (enabled in Pi; no copy)`);
   for (const path of outcome.written) console.log(`wrote ${short(path)}`);
   for (const path of outcome.kept) console.log(`kept  ${short(path)} (already present — left exactly as it is)`);
   for (const failure of outcome.failed) console.error(`FAILED ${short(failure.path)}: ${failure.error}`);