pi-continuous-learning 0.5.1 → 0.6.0

package/dist/prompts/analyzer-user-single-shot.d.ts

@@ -0,0 +1,22 @@
+/**
+ * User prompt builder for the single-shot background analyzer.
+ * Includes current instincts inline (no tool calls needed) and filtered observations.
+ */
+import type { InstalledSkill, Instinct, ProjectEntry } from "../types.js";
+export interface SingleShotPromptOptions {
+    agentsMdProject?: string | null;
+    agentsMdGlobal?: string | null;
+    installedSkills?: InstalledSkill[];
+}
+/**
+ * Builds the user prompt for the single-shot analyzer.
+ * Embeds all current instincts inline so the model has full context
+ * without making any tool calls.
+ *
+ * @param project          - Project metadata
+ * @param existingInstincts - All current instincts (project + global)
+ * @param observationLines  - Preprocessed observation lines (JSONL strings)
+ * @param options           - Optional AGENTS.md content and installed skills
+ */
+export declare function buildSingleShotUserPrompt(project: ProjectEntry, existingInstincts: Instinct[], observationLines: string[], options?: SingleShotPromptOptions): string;
+//# sourceMappingURL=analyzer-user-single-shot.d.ts.map

package/dist/prompts/analyzer-user-single-shot.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"analyzer-user-single-shot.d.ts","sourceRoot":"","sources":["../../src/prompts/analyzer-user-single-shot.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,cAAc,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAG1E,MAAM,WAAW,uBAAuB;IACtC,eAAe,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAChC,cAAc,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC/B,eAAe,CAAC,EAAE,cAAc,EAAE,CAAC;CACpC;AAED;;;;;;;;;GASG;AACH,wBAAgB,yBAAyB,CACvC,OAAO,EAAE,YAAY,EACrB,iBAAiB,EAAE,QAAQ,EAAE,EAC7B,gBAAgB,EAAE,MAAM,EAAE,EAC1B,OAAO,GAAE,uBAA4B,GACpC,MAAM,CA2DR"}

package/dist/prompts/analyzer-user-single-shot.js

@@ -0,0 +1,53 @@
+import { formatInstinctsForPrompt } from "../cli/analyze-single-shot.js";
+/**
+ * Builds the user prompt for the single-shot analyzer.
+ * Embeds all current instincts inline so the model has full context
+ * without making any tool calls.
+ *
+ * @param project          - Project metadata
+ * @param existingInstincts - All current instincts (project + global)
+ * @param observationLines  - Preprocessed observation lines (JSONL strings)
+ * @param options           - Optional AGENTS.md content and installed skills
+ */
+export function buildSingleShotUserPrompt(project, existingInstincts, observationLines, options = {}) {
+    const { agentsMdProject = null, agentsMdGlobal = null, installedSkills = [] } = options;
+    const observationBlock = observationLines.length > 0
+        ? observationLines.join("\n")
+        : "(no observations recorded yet)";
+    const instinctBlock = formatInstinctsForPrompt(existingInstincts);
+    const parts = [
+        "## Project Context",
+        "",
+        `project_id: ${project.id}`,
+        `project_name: ${project.name}`,
+        "",
+        "## Existing Instincts",
+        "",
+        instinctBlock,
+        "",
+        "## New Observations (preprocessed)",
+        "",
+        "```",
+        observationBlock,
+        "```",
+    ];
+    if (agentsMdProject != null || agentsMdGlobal != null) {
+        parts.push("", "## Existing Guidelines", "");
+        if (agentsMdProject != null) {
+            parts.push("### Project AGENTS.md", "", agentsMdProject, "");
+        }
+        if (agentsMdGlobal != null) {
+            parts.push("### Global AGENTS.md", "", agentsMdGlobal, "");
+        }
+    }
+    if (installedSkills.length > 0) {
+        parts.push("", "## Installed Skills", "");
+        for (const skill of installedSkills) {
+            parts.push(`- **${skill.name}**: ${skill.description}`);
+        }
+        parts.push("");
+    }
+    parts.push("", "## Instructions", "", "1. Review the existing instincts above.", "2. Analyze the new observations for patterns per the system prompt rules.", "3. Return a JSON change-set: create new instincts, update existing ones, or delete obsolete ones.", "4. Apply feedback analysis using the active_instincts field in each observation.", "5. Passive confidence decay has already been applied before this analysis.", "", "Return ONLY the JSON object. No prose, no markdown fences.");
+    return parts.join("\n");
+}
+//# sourceMappingURL=analyzer-user-single-shot.js.map

package/dist/prompts/analyzer-user-single-shot.js.map

@@ -0,0 +1 @@
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package/dist/prompts/analyzer-user.d.ts

@@ -15,8 +15,10 @@ export declare function tailObservations(observationsPath: string, maxEntries?:
 export interface TailSinceResult {
     lines: string[];
     totalLineCount: number;
+    /** Number of raw new lines before preprocessing. */
+    rawLineCount: number;
 }
-export declare function tailObservationsSince(observationsPath: string, sinceLineCount: number, maxEntries?: number): TailSinceResult;
+export declare function tailObservationsSince(observationsPath: string, sinceLineCount: number, maxEntries?: number, preprocess?: boolean): TailSinceResult;
 export interface AnalyzerUserPromptOptions {
     agentsMdProject?: string | null;
     agentsMdGlobal?: string | null;

package/dist/prompts/analyzer-user.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"analyzer-user.d.ts","sourceRoot":"","sources":["../../src/prompts/analyzer-user.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,KAAK,EAAE,cAAc,EAAe,YAAY,EAAE,MAAM,aAAa,CAAC;AAM7E;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAC9B,gBAAgB,EAAE,MAAM,EACxB,UAAU,SAAmB,GAC5B,MAAM,EAAE,CAUV;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,cAAc,EAAE,MAAM,CAAC;IACvB,oDAAoD;IACpD,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,wBAAgB,qBAAqB,CACnC,gBAAgB,EAAE,MAAM,EACxB,cAAc,EAAE,MAAM,EACtB,UAAU,SAAmB,EAC7B,UAAU,UAAO,GAChB,eAAe,CAkCjB;AAED,MAAM,WAAW,yBAAyB;IACxC,eAAe,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAChC,cAAc,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC/B,eAAe,CAAC,EAAE,cAAc,EAAE,CAAC;IACnC,gBAAgB,CAAC,EAAE,MAAM,EAAE,CAAC;CAC7B;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,uBAAuB,CACrC,gBAAgB,EAAE,MAAM,EACxB,YAAY,EAAE,MAAM,EACpB,OAAO,EAAE,YAAY,EACrB,OAAO,GAAE,yBAA8B,GACtC,MAAM,CAmER"}

package/dist/prompts/analyzer-user.js

@@ -4,6 +4,7 @@
  * to locate observations and instinct files for the current project.
  */
 import { existsSync, readFileSync } from "node:fs";
+import { preprocessObservations } from "../observation-preprocessor.js";
 /** Maximum number of observation lines to include in analysis. */
 const MAX_TAIL_ENTRIES = 500;
 /**
@@ -24,9 +25,9 @@ export function tailObservations(observationsPath, maxEntries = MAX_TAIL_ENTRIES
         .filter((l) => l.length > 0);
     return lines.slice(-maxEntries);
 }
-export function tailObservationsSince(observationsPath, sinceLineCount, maxEntries = MAX_TAIL_ENTRIES) {
+export function tailObservationsSince(observationsPath, sinceLineCount, maxEntries = MAX_TAIL_ENTRIES, preprocess = true) {
     if (!existsSync(observationsPath)) {
-        return { lines: [], totalLineCount: 0 };
+        return { lines: [], totalLineCount: 0, rawLineCount: 0 };
     }
     const content = readFileSync(observationsPath, "utf-8");
     const allLines = content
@@ -36,11 +37,23 @@ export function tailObservationsSince(observationsPath, sinceLineCount, maxEntri
     const totalLineCount = allLines.length;
     // If file was archived/reset (fewer lines than cursor), treat as fresh
     const effectiveSince = totalLineCount < sinceLineCount ? 0 : sinceLineCount;
-    const newLines = allLines.slice(effectiveSince);
-    return {
-        lines: newLines.slice(-maxEntries),
-        totalLineCount,
-    };
+    const newLines = allLines.slice(effectiveSince).slice(-maxEntries);
+    const rawLineCount = newLines.length;
+    if (!preprocess) {
+        return { lines: newLines, totalLineCount, rawLineCount };
+    }
+    const parsed = [];
+    for (const line of newLines) {
+        try {
+            parsed.push(JSON.parse(line));
+        }
+        catch {
+            // skip malformed lines
+        }
+    }
+    const filtered = preprocessObservations(parsed);
+    const lines = filtered.map((obs) => JSON.stringify(obs));
+    return { lines, totalLineCount, rawLineCount };
 }
 /**
  * Builds the user prompt for the background Haiku analyzer.

package/dist/prompts/analyzer-user.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analyzer-user.js","sourceRoot":"","sources":["../../src/prompts/analyzer-user.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAEnD,OAAO,EAAE,sBAAsB,EAAE,MAAM,gCAAgC,CAAC;AAExE,kEAAkE;AAClE,MAAM,gBAAgB,GAAG,GAAG,CAAC;AAE7B;;;;;;GAMG;AACH,MAAM,UAAU,gBAAgB,CAC9B,gBAAwB,EACxB,UAAU,GAAG,gBAAgB;IAE7B,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE,CAAC;QAClC,OAAO,EAAE,CAAC;IACZ,CAAC;IACD,MAAM,OAAO,GAAG,YAAY,CAAC,gBAAgB,EAAE,OAAO,CAAC,CAAC;IACxD,MAAM,KAAK,GAAG,OAAO;SAClB,KAAK,CAAC,IAAI,CAAC;SACX,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SACpB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAC/B,OAAO,KAAK,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC,CAAC;AAClC,CAAC;AASD,MAAM,UAAU,qBAAqB,CACnC,gBAAwB,EACxB,cAAsB,EACtB,UAAU,GAAG,gBAAgB,EAC7B,UAAU,GAAG,IAAI;IAEjB,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE,CAAC;QAClC,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,cAAc,EAAE,CAAC,EAAE,YAAY,EAAE,CAAC,EAAE,CAAC;IAC3D,CAAC;IACD,MAAM,OAAO,GAAG,YAAY,CAAC,gBAAgB,EAAE,OAAO,CAAC,CAAC;IACxD,MAAM,QAAQ,GAAG,OAAO;SACrB,KAAK,CAAC,IAAI,CAAC;SACX,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SACpB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAE/B,MAAM,cAAc,GAAG,QAAQ,CAAC,MAAM,CAAC;IAEvC,uEAAuE;IACvE,MAAM,cAAc,GAAG,cAAc,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC;IAC5E,MAAM,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC,cAAc,CAAC,CAAC,KAAK,CAAC,CAAC,UAAU,CAAC,CAAC;IACnE,MAAM,YAAY,GAAG,QAAQ,CAAC,MAAM,CAAC;IAErC,IAAI,CAAC,UAAU,EAAE,CAAC;QAChB,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,YAAY,EAAE,CAAC;IAC3D,CAAC;IAED,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE,CAAC;QAC5B,IAAI,CAAC;YACH,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAgB,CAAC,CAAC;QAC/C,CAAC;QAAC,MAAM,CAAC;YACP,uBAAuB;QACzB,CAAC;IACH,CAAC;IAED,MAAM,QAAQ,GAAG,sBAAsB,CAAC,MAAM,CAAC,CAAC;IAChD,MAAM,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;IAEzD,OAAO,EAAE,KAAK,EAAE,cAAc,EAAE,YAAY,EAAE,CAAC;AACjD,CAAC;AASD;;;;;;;;;;GAUG;AACH,MAAM,UAAU,uBAAuB,CACrC,gBAAwB,EACxB,YAAoB,EACpB,OAAqB,EACrB,UAAqC,EAAE;IAEvC,MAAM,EAAE,eAAe,GAAG,IAAI,EAAE,cAAc,GAAG,IAAI,EAAE,eAAe,GAAG,EAAE,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAC;IAE1G,MAAM,WAAW,GAAG,gBAAgB,IAAI,gBAAgB,CAAC,gBAAgB,CAAC,CAAC;IAC3E,MAAM,gBAAgB,GACpB,WAAW,CAAC,MAAM,GAAG,CAAC;QACpB,CAAC,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC;QACxB,CAAC,CAAC,gCAAgC,CAAC;IAEvC,MAAM,YAAY,GAAG,gBAAgB;QACnC,CAAC,CAAC,+CAA+C,gBAAgB,GAAG;QACpE,CAAC,CAAC,8BAA8B,gBAAgB,GAAG,CAAC;IAEtD,MAAM,KAAK,GAAa;QACtB,kBAAkB;QAClB,EAAE;QACF,uFAAuF;QACvF,EAAE;QACF,oBAAoB;QACpB,EAAE;QACF,eAAe,OAAO,CAAC,EAAE,EAAE;QAC3B,iBAAiB,OAAO,CAAC,IAAI,EAAE;QAC/B,EAAE;QACF,eAAe;QACf,EAAE;QACF,sBAAsB,gBAAgB,EAAE;QACxC,wBAAwB,YAAY,EAAE;QACtC,EAAE;QACF,kCAAkC,YAAY,GAAG;QACjD,EAAE;QACF,KAAK;QACL,gBAAgB;QAChB,KAAK;KACN,CAAC;IAEF,IAAI,eAAe,IAAI,IAAI,IAAI,cAAc,IAAI,IAAI,EAAE,CAAC;QACtD,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,wBAAwB,EAAE,EAAE,CAAC,CAAC;QAC7C,IAAI,eAAe,IAAI,IAAI,EAAE,CAAC;YAC5B,KAAK,CAAC,IAAI,CAAC,uBAAuB,EAAE,EAAE,EAAE,eAAe,EAAE,EAAE,CAAC,CAAC;QAC/D,CAAC;QACD,IAAI,cAAc,IAAI,IAAI,EAAE,CAAC;YAC3B,KAAK,CAAC,IAAI,CAAC,sBAAsB,EAAE,EAAE,EAAE,cAAc,EAAE,EAAE,CAAC,CAAC;QAC7D,CAAC;IACH,CAAC;IAED,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC/B,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,qBAAqB,EAAE,EAAE,CAAC,CAAC;QAC1C,KAAK,MAAM,KAAK,IAAI,eAAe,EAAE,CAAC;YACpC,KAAK,CAAC,IAAI,CAAC,OAAO,KAAK,CAAC,IAAI,OAAO,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC;QAC1D,CAAC;QACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;IAED,KAAK,CAAC,IAAI,CACR,EAAE,EACF,iBAAiB,EACjB,EAAE,EACF,+DAA+D,EAC/D,mFAAmF,EACnF,kFAAkF,EAClF,kFAAkF,EAClF,8DAA8D,EAC9D,EAAE,EACF,qGAAqG,CACtG,CAAC;IAEF,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "pi-continuous-learning",
-  "version": "0.5.1",
+  "version": "0.6.0",
   "description": "A Pi extension that observes coding sessions and distills patterns into reusable instincts.",
   "type": "module",
   "license": "MIT",

package/src/cli/analyze-single-shot.ts

@@ -0,0 +1,145 @@
+/**
+ * Single-shot (non-agentic) analyzer core.
+ *
+ * Replaces the multi-turn agentic session with a single complete() call.
+ * The model receives all current instincts inline and returns a JSON change-set.
+ * Changes are applied client-side, eliminating the ~16x cache-read multiplier.
+ */
+import type { AssistantMessage, Context } from "@mariozechner/pi-ai";
+import { complete } from "@mariozechner/pi-ai";
+import type { Instinct } from "../types.js";
+import { serializeInstinct } from "../instinct-parser.js";
+
+export interface InstinctChangePayload {
+  id: string;
+  title: string;
+  trigger: string;
+  action: string;
+  confidence: number;
+  domain: string;
+  scope: "project" | "global";
+  observation_count?: number;
+  confirmed_count?: number;
+  contradicted_count?: number;
+  inactive_count?: number;
+  evidence?: string[];
+}
+
+export interface InstinctChange {
+  action: "create" | "update" | "delete";
+  instinct?: InstinctChangePayload;
+  /** For delete: the instinct ID to remove. */
+  id?: string;
+  /** For delete: the scope to target. */
+  scope?: "project" | "global";
+}
+
+export interface SingleShotResult {
+  changes: InstinctChange[];
+  message: AssistantMessage;
+}
+
+/**
+ * Parses the model's raw text response into an array of InstinctChange.
+ * Strips markdown code fences if present. Throws on invalid JSON or schema.
+ */
+export function parseChanges(raw: string): InstinctChange[] {
+  const stripped = raw
+    .replace(/^```(?:json)?\s*/i, "")
+    .replace(/\s*```\s*$/, "")
+    .trim();
+
+  let parsed: unknown;
+  try {
+    parsed = JSON.parse(stripped);
+  } catch (e) {
+    throw new Error(
+      `Analyzer returned invalid JSON: ${String(e)}\nRaw: ${raw.slice(0, 200)}`
+    );
+  }
+
+  if (
+    typeof parsed !== "object" ||
+    parsed === null ||
+    !Array.isArray((parsed as { changes?: unknown }).changes)
+  ) {
+    throw new Error(
+      `Analyzer response missing 'changes' array. Got: ${JSON.stringify(parsed).slice(0, 200)}`
+    );
+  }
+
+  return (parsed as { changes: InstinctChange[] }).changes;
+}
+
+/**
+ * Builds a full Instinct from a create/update change.
+ * Returns null for delete changes or changes with missing instinct data.
+ */
+export function buildInstinctFromChange(
+  change: InstinctChange,
+  existing: Instinct | null,
+  projectId: string
+): Instinct | null {
+  if (change.action === "delete" || !change.instinct) {
+    return null;
+  }
+
+  const now = new Date().toISOString();
+  const payload = change.instinct;
+
+  return {
+    id: payload.id,
+    title: payload.title,
+    trigger: payload.trigger,
+    action: payload.action,
+    confidence: Math.max(0.1, Math.min(0.9, payload.confidence)),
+    domain: payload.domain,
+    scope: payload.scope,
+    source: "personal",
+    ...(payload.scope === "project" ? { project_id: projectId } : {}),
+    created_at: existing?.created_at ?? now,
+    updated_at: now,
+    observation_count: payload.observation_count ?? 1,
+    confirmed_count: payload.confirmed_count ?? 0,
+    contradicted_count: payload.contradicted_count ?? 0,
+    inactive_count: payload.inactive_count ?? 0,
+    ...(payload.evidence !== undefined ? { evidence: payload.evidence } : {}),
+  };
+}
+
+/**
+ * Formats existing instincts as serialized markdown blocks for inline context.
+ */
+export function formatInstinctsForPrompt(instincts: Instinct[]): string {
+  if (instincts.length === 0) {
+    return "(no existing instincts)";
+  }
+  return instincts.map((i) => serializeInstinct(i)).join("\n---\n");
+}
+
+/**
+ * Runs a single complete() call with the provided context.
+ * Returns parsed changes and the raw AssistantMessage (for usage stats).
+ */
+export async function runSingleShot(
+  context: Context,
+  model: Parameters<typeof complete>[0],
+  apiKey: string,
+  signal?: AbortSignal
+): Promise<SingleShotResult> {
+  const opts: Parameters<typeof complete>[2] = { apiKey };
+  if (signal !== undefined) opts.signal = signal;
+  const message = await complete(model, context, opts);
+
+  const textContent = message.content
+    .filter((c) => c.type === "text")
+    .map((c) => (c as { type: "text"; text: string }).text)
+    .join("");
+
+  if (!textContent.trim()) {
+    throw new Error("Analyzer returned empty response");
+  }
+
+  const changes = parseChanges(textContent);
+  return { changes, message };
+}

package/src/cli/analyze.ts

@@ -7,36 +7,35 @@ import {
   unlinkSync,
 } from "node:fs";
 import { join } from "node:path";
-import {
-  createAgentSession,
-  SessionManager,
-  AuthStorage,
-  ModelRegistry,
-  DefaultResourceLoader,
-} from "@mariozechner/pi-coding-agent";
+import { AuthStorage } from "@mariozechner/pi-coding-agent";
 import { getModel } from "@mariozechner/pi-ai";
 
 import { loadConfig, DEFAULT_CONFIG } from "../config.js";
-import type { ProjectEntry } from "../types.js";
+import type { InstalledSkill, ProjectEntry } from "../types.js";
 import {
   getBaseDir,
   getProjectsRegistryPath,
   getObservationsPath,
   getProjectDir,
+  getProjectInstinctsDir,
+  getGlobalInstinctsDir,
 } from "../storage.js";
 import { countObservations } from "../observations.js";
 import { runDecayPass } from "../instinct-decay.js";
-import { buildAnalyzerUserPrompt, tailObservationsSince } from "../prompts/analyzer-user.js";
-import { buildAnalyzerSystemPrompt } from "./analyze-prompt.js";
+import { tailObservationsSince } from "../prompts/analyzer-user.js";
+import { buildSingleShotSystemPrompt } from "../prompts/analyzer-system-single-shot.js";
+import { buildSingleShotUserPrompt } from "../prompts/analyzer-user-single-shot.js";
+import {
+  runSingleShot,
+  buildInstinctFromChange,
+} from "./analyze-single-shot.js";
 import {
-  createInstinctListTool,
-  createInstinctReadTool,
-  createInstinctWriteTool,
-  createInstinctDeleteTool,
-} from "../instinct-tools.js";
+  loadProjectInstincts,
+  loadGlobalInstincts,
+  saveInstinct,
+} from "../instinct-store.js";
 import { readAgentsMd } from "../agents-md.js";
 import { homedir } from "node:os";
-import type { InstalledSkill } from "../types.js";
 import { AnalyzeLogger, type ProjectRunStats, type RunSummary } from "./analyze-logger.js";
 
 // ---------------------------------------------------------------------------
@@ -59,7 +58,6 @@ function acquireLock(baseDir: string): boolean {
       const lock = JSON.parse(content) as { pid: number; started_at: string };
       const age = Date.now() - new Date(lock.started_at).getTime();
 
-      // Check if the owning process is still alive
       try {
         process.kill(lock.pid, 0); // signal 0 = existence check, no actual signal
         if (age < LOCK_STALE_MS) {
@@ -104,72 +102,6 @@ function startGlobalTimeout(timeoutMs: number, logger: AnalyzeLogger): void {
   }, timeoutMs).unref();
 }
 
-// ---------------------------------------------------------------------------
-// Instinct operation tracking
-// ---------------------------------------------------------------------------
-
-interface InstinctOpCounts {
-  created: number;
-  updated: number;
-  deleted: number;
-}
-
-/**
- * Wraps instinct tools to count create/update/delete operations.
- * Returns new tool instances that increment the provided counts.
- */
-function wrapInstinctToolsWithTracking(
-  projectId: string,
-  projectName: string,
-  baseDir: string,
-  counts: InstinctOpCounts
-) {
-  const writeTool = createInstinctWriteTool(projectId, projectName, baseDir);
-  const deleteTool = createInstinctDeleteTool(projectId, baseDir);
-
-  const trackedWrite = {
-    ...writeTool,
-    async execute(
-      toolCallId: string,
-      params: Parameters<typeof writeTool.execute>[1],
-      signal: AbortSignal | undefined,
-      onUpdate: unknown,
-      ctx: unknown
-    ) {
-      const result = await writeTool.execute(toolCallId, params, signal, onUpdate, ctx);
-      const details = result.details as { action?: string } | undefined;
-      if (details?.action === "created") {
-        counts.created++;
-      } else {
-        counts.updated++;
-      }
-      return result;
-    },
-  };
-
-  const trackedDelete = {
-    ...deleteTool,
-    async execute(
-      toolCallId: string,
-      params: Parameters<typeof deleteTool.execute>[1],
-      signal: AbortSignal | undefined,
-      onUpdate: unknown,
-      ctx: unknown
-    ) {
-      const result = await deleteTool.execute(toolCallId, params, signal, onUpdate, ctx);
-      counts.deleted++;
-      return result;
-    },
-  };
-
-  return {
-    listTool: createInstinctListTool(projectId, baseDir),
-    readTool: createInstinctReadTool(projectId, baseDir),
-    writeTool: trackedWrite,
-    deleteTool: trackedDelete,
-  };
-}
-
 // ---------------------------------------------------------------------------
 // Per-project analysis
 // ---------------------------------------------------------------------------
@@ -237,10 +169,13 @@ async function analyzeProject(
 
   const obsPath = getObservationsPath(project.id, baseDir);
   const sinceLineCount = meta.last_observation_line_count ?? 0;
-  const { lines: newObsLines, totalLineCount } = tailObservationsSince(obsPath, sinceLineCount);
+  const { lines: newObsLines, totalLineCount, rawLineCount } = tailObservationsSince(
+    obsPath,
+    sinceLineCount
+  );
 
   if (newObsLines.length === 0) {
-    return { ran: false, skippedReason: "no new observation lines" };
+    return { ran: false, skippedReason: "no new observation lines after preprocessing" };
   }
 
   const obsCount = countObservations(project.id, baseDir);
@@ -249,11 +184,14 @@ async function analyzeProject(
   }
 
   const startTime = Date.now();
-  logger.projectStart(project.id, project.name, newObsLines.length, obsCount);
+  logger.projectStart(project.id, project.name, rawLineCount, obsCount);
 
   runDecayPass(project.id, baseDir);
 
-  const instinctsDir = join(getProjectDir(project.id, baseDir), "instincts", "personal");
+  // Load current instincts inline - no tool calls needed
+  const projectInstincts = loadProjectInstincts(project.id, baseDir);
+  const globalInstincts = loadGlobalInstincts(baseDir);
+  const allInstincts = [...projectInstincts, ...globalInstincts];
 
   const agentsMdProject = readAgentsMd(join(project.root, "AGENTS.md"));
   const agentsMdGlobal = readAgentsMd(join(homedir(), ".pi", "agent", "AGENTS.md"));
@@ -270,68 +208,89 @@ async function analyzeProject(
     // Skills loading is best-effort - continue without them
   }
 
-  const userPrompt = buildAnalyzerUserPrompt(obsPath, instinctsDir, project, {
+  const userPrompt = buildSingleShotUserPrompt(project, allInstincts, newObsLines, {
     agentsMdProject,
     agentsMdGlobal,
     installedSkills,
-    observationLines: newObsLines,
   });
 
   const authStorage = AuthStorage.create();
-  const modelRegistry = new ModelRegistry(authStorage);
   const modelId = (config.model || DEFAULT_CONFIG.model) as Parameters<typeof getModel>[1];
   const model = getModel("anthropic", modelId);
+  const apiKey = await authStorage.getApiKey("anthropic");
+
+  if (!apiKey) {
+    throw new Error("No Anthropic API key configured. Set via auth.json or ANTHROPIC_API_KEY.");
+  }
 
-  // Track instinct operations
-  const instinctCounts: InstinctOpCounts = { created: 0, updated: 0, deleted: 0 };
-  const trackedTools = wrapInstinctToolsWithTracking(project.id, project.name, baseDir, instinctCounts);
+  const context = {
+    systemPrompt: buildSingleShotSystemPrompt(),
+    messages: [
+      { role: "user" as const, content: userPrompt, timestamp: Date.now() },
+    ],
+  };
 
-  const customTools = [
-    trackedTools.listTool,
-    trackedTools.readTool,
-    trackedTools.writeTool,
-    trackedTools.deleteTool,
-  ];
+  const timeoutMs = (config.timeout_seconds ?? DEFAULT_CONFIG.timeout_seconds) * 1000;
+  const abortController = new AbortController();
+  const timeoutHandle = setTimeout(() => abortController.abort(), timeoutMs);
 
-  const loader = new DefaultResourceLoader({
-    systemPromptOverride: () => buildAnalyzerSystemPrompt(),
-  });
-  await loader.reload();
-
-  const { session } = await createAgentSession({
-    model,
-    authStorage,
-    modelRegistry,
-    sessionManager: SessionManager.inMemory(),
-    customTools,
-    resourceLoader: loader,
-  });
+  const instinctCounts = { created: 0, updated: 0, deleted: 0 };
+  const projectInstinctsDir = getProjectInstinctsDir(project.id, "personal", baseDir);
+  const globalInstinctsDir = getGlobalInstinctsDir("personal", baseDir);
 
+  let singleShotMessage;
   try {
-    await session.prompt(userPrompt);
+    const result = await runSingleShot(context, model, apiKey, abortController.signal);
+    singleShotMessage = result.message;
+
+    for (const change of result.changes) {
+      if (change.action === "delete") {
+        const id = change.id;
+        if (!id) continue;
+        const dir = change.scope === "global" ? globalInstinctsDir : projectInstinctsDir;
+        const filePath = join(dir, `${id}.md`);
+        if (existsSync(filePath)) {
+          unlinkSync(filePath);
+          instinctCounts.deleted++;
+        }
+      } else {
+        // create or update
+        const existing = allInstincts.find((i) => i.id === change.instinct?.id) ?? null;
+        const instinct = buildInstinctFromChange(change, existing, project.id);
+        if (!instinct) continue;
+
+        const dir = instinct.scope === "global" ? globalInstinctsDir : projectInstinctsDir;
+        saveInstinct(instinct, dir);
+
+        if (change.action === "create") {
+          instinctCounts.created++;
+        } else {
+          instinctCounts.updated++;
+        }
+      }
+    }
   } finally {
-    session.dispose();
+    clearTimeout(timeoutHandle);
   }
 
-  // Collect stats after session completes
-  const sessionStats = session.getSessionStats();
+  const usage = singleShotMessage!.usage;
   const durationMs = Date.now() - startTime;
 
   const stats: ProjectRunStats = {
     project_id: project.id,
     project_name: project.name,
     duration_ms: durationMs,
-    observations_processed: newObsLines.length,
+    observations_processed: rawLineCount,
     observations_total: obsCount,
     instincts_created: instinctCounts.created,
     instincts_updated: instinctCounts.updated,
     instincts_deleted: instinctCounts.deleted,
-    tokens_input: sessionStats.tokens.input,
-    tokens_output: sessionStats.tokens.output,
-    tokens_cache_read: sessionStats.tokens.cacheRead,
-    tokens_cache_write: sessionStats.tokens.cacheWrite,
-    tokens_total: sessionStats.tokens.total,
-    cost_usd: sessionStats.cost,
+    tokens_input: usage.input,
+    tokens_output: usage.output,
+    tokens_cache_read: usage.cacheRead,
+    tokens_cache_write: usage.cacheWrite,
+    tokens_total: usage.totalTokens,
+    cost_usd: usage.cost.total,
     model: modelId,
   };
 
@@ -420,7 +379,6 @@ async function main(): Promise<void> {
 
 main().catch((err) => {
   releaseLock(getBaseDir());
-  // Last-resort logging - config may not have loaded
   const logger = new AnalyzeLogger();
   logger.error("Fatal error", err);
   process.exit(1);