pi-continuous-learning 0.3.0 → 0.5.0

package/README.md

@@ -39,7 +39,7 @@ This installs the extension globally and makes the `pi-cl-analyze` CLI available
 ### Requirements
 
 - [Pi](https://github.com/nicholasgasior/pi-coding-agent) >= 0.62.0
-- An active Claude subscription (the analyzer uses Haiku via your existing Pi credentials — no separate API key needed)
+- An LLM provider configured with Pi (subscription or API key — the analyzer defaults to Haiku; see [Configuration](#configuration) to change the model)
 - Node.js >= 18
 
 ## Usage
@@ -95,6 +95,32 @@ The script:
 - **Global timeout:** The process exits after 5 minutes regardless of progress.
 - **Stale lock detection:** If a previous run crashed, the lockfile is automatically cleaned up after 10 minutes or if the owning process is no longer alive.
 
+### Logging
+
+The analyzer writes structured JSON logs to `~/.pi/continuous-learning/analyzer.log` (configurable via `log_path` in config). Each run logs:
+
+- **Run timing** - total duration and per-project duration
+- **Token usage** - input, output, cache read/write, total
+- **Cost** - USD cost per project and total
+- **Instinct changes** - counts of created, updated, and deleted instincts
+- **Skip reasons** - why projects were skipped (no new observations, below threshold, etc.)
+- **Errors** - full error details with stack traces
+
+Each log line is a JSON object, making it easy to parse with `jq`:
+
+```bash
+# View recent run summaries
+cat ~/.pi/continuous-learning/analyzer.log | jq 'select(.event == "run_complete")'
+
+# Check total cost over time
+cat ~/.pi/continuous-learning/analyzer.log | jq 'select(.event == "run_complete") | .total_cost_usd'
+
+# See which projects were processed
+cat ~/.pi/continuous-learning/analyzer.log | jq 'select(.event == "project_complete") | {project: .project_name, duration_s: (.duration_ms/1000), cost: .cost_usd}'
+```
+
+The log file auto-rotates at 10 MB (old content moved to `analyzer.log.old`). When the log file is not writable, output falls back to stderr.
+
 ### Setting up a schedule (macOS)
 
 The recommended way to run the analyzer on a recurring schedule on macOS is with `launchd`, which persists across reboots and handles log rotation.
@@ -124,9 +150,9 @@ cat > ~/Library/LaunchAgents/com.pi-continuous-learning.analyze.plist << EOF
     <key>StartInterval</key>
     <integer>300</integer>
     <key>StandardOutPath</key>
-    <string>/tmp/pi-cl-analyze.log</string>
+    <string>/tmp/pi-cl-analyze-stdout.log</string>
     <key>StandardErrorPath</key>
-    <string>/tmp/pi-cl-analyze.log</string>
+    <string>/tmp/pi-cl-analyze-stderr.log</string>
     <key>EnvironmentVariables</key>
     <dict>
         <key>PATH</key>
@@ -153,8 +179,11 @@ The analyzer will now run every 5 minutes (300 seconds) in the background, start
 # Check if the job is loaded
 launchctl list | grep pi-continuous-learning
 
-# View recent output
-tail -20 /tmp/pi-cl-analyze.log
+# View recent log entries (structured JSON)
+tail -5 ~/.pi/continuous-learning/analyzer.log | jq .
+
+# View stderr output (fallback only)
+tail -20 /tmp/pi-cl-analyze-stderr.log
 ```
 
 #### Disabling the schedule
@@ -186,7 +215,7 @@ Use cron:
 crontab -e
 
 # Add this line (runs every 5 minutes):
-*/5 * * * * pi-cl-analyze >> /tmp/pi-cl-analyze.log 2>&1
+*/5 * * * * pi-cl-analyze 2>> /tmp/pi-cl-analyze-stderr.log
 ```
 
 To disable, remove the line from `crontab -e`.
@@ -271,8 +300,9 @@ Only include the fields you want to change — missing fields use the defaults a
 | `min_confidence` | 0.5 | Instincts below this are not injected into prompts |
 | `max_instincts` | 20 | Maximum instincts injected per turn |
 | `max_injection_chars` | 4000 | Character budget for the injection block (~1000 tokens) |
-| `model` | `claude-haiku-4-5` | Model for the background analyzer |
+| `model` | `claude-haiku-4-5` | Model for the background analyzer (lightweight models recommended to minimize cost) |
 | `timeout_seconds` | 120 | Per-project timeout for the analyzer LLM session |
+| `log_path` | `~/.pi/continuous-learning/analyzer.log` | Path to the analyzer log file |
 
 ## Storage
 
@@ -296,8 +326,7 @@ All data stays local on your machine:
 - All data stays on your machine — no external telemetry
 - Secrets (API keys, tokens, passwords) are scrubbed from observations before writing to disk
 - Only instincts (patterns) can be exported — never raw observations
-- The analyzer reuses your existing Pi/Claude subscription credentials
-- No separate API key required
+- The analyzer uses your existing Pi LLM credentials — no additional keys needed
 
 ## Development
 

package/dist/cli/analyze-logger.d.ts

@@ -0,0 +1,63 @@
+/**
+ * Structured logging for the background analyzer CLI.
+ * Writes to a configurable log file (default: ~/.pi/continuous-learning/analyzer.log).
+ * Each line is a JSON object for easy parsing and grep-ability.
+ *
+ * Log levels: info, warn, error
+ * Never throws - all I/O failures fall back to stderr.
+ */
+export interface ProjectRunStats {
+    readonly project_id: string;
+    readonly project_name: string;
+    readonly duration_ms: number;
+    readonly observations_processed: number;
+    readonly observations_total: number;
+    readonly instincts_created: number;
+    readonly instincts_updated: number;
+    readonly instincts_deleted: number;
+    readonly tokens_input: number;
+    readonly tokens_output: number;
+    readonly tokens_cache_read: number;
+    readonly tokens_cache_write: number;
+    readonly tokens_total: number;
+    readonly cost_usd: number;
+    readonly model: string;
+    readonly skipped_reason?: string;
+}
+export interface RunSummary {
+    readonly total_duration_ms: number;
+    readonly projects_processed: number;
+    readonly projects_skipped: number;
+    readonly projects_errored: number;
+    readonly projects_total: number;
+    readonly total_tokens: number;
+    readonly total_cost_usd: number;
+    readonly total_instincts_created: number;
+    readonly total_instincts_updated: number;
+    readonly total_instincts_deleted: number;
+    readonly project_stats: readonly ProjectRunStats[];
+}
+export declare class AnalyzeLogger {
+    private readonly logPath;
+    constructor(logPath?: string);
+    getLogPath(): string;
+    info(message: string, data?: Record<string, unknown>): void;
+    warn(message: string, data?: Record<string, unknown>): void;
+    error(message: string, error?: unknown, data?: Record<string, unknown>): void;
+    /** Log the start of a full analyzer run */
+    runStart(projectCount: number): void;
+    /** Log that a project was skipped (with reason) */
+    projectSkipped(projectId: string, projectName: string, reason: string): void;
+    /** Log the start of a project analysis */
+    projectStart(projectId: string, projectName: string, newObservations: number, totalObservations: number): void;
+    /** Log per-project results after analysis completes */
+    projectComplete(stats: ProjectRunStats): void;
+    /** Log a project that errored during analysis */
+    projectError(projectId: string, projectName: string, error: unknown): void;
+    /** Log the full run summary */
+    runComplete(summary: RunSummary): void;
+    private ensureLogDir;
+    private write;
+    private rotateIfNeeded;
+}
+//# sourceMappingURL=analyze-logger.d.ts.map

package/dist/cli/analyze-logger.d.ts.map

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package/dist/cli/analyze-logger.js

@@ -0,0 +1,140 @@
+/**
+ * Structured logging for the background analyzer CLI.
+ * Writes to a configurable log file (default: ~/.pi/continuous-learning/analyzer.log).
+ * Each line is a JSON object for easy parsing and grep-ability.
+ *
+ * Log levels: info, warn, error
+ * Never throws - all I/O failures fall back to stderr.
+ */
+import { appendFileSync, mkdirSync, renameSync, statSync } from "node:fs";
+import { dirname } from "node:path";
+import { join } from "node:path";
+import { getBaseDir } from "../storage.js";
+// ---------------------------------------------------------------------------
+// Constants
+// ---------------------------------------------------------------------------
+const DEFAULT_LOG_FILENAME = "analyzer.log";
+const MAX_LOG_SIZE_BYTES = 10 * 1024 * 1024; // 10 MB - rotate beyond this
+// ---------------------------------------------------------------------------
+// Logger
+// ---------------------------------------------------------------------------
+export class AnalyzeLogger {
+    logPath;
+    constructor(logPath) {
+        this.logPath = logPath ?? join(getBaseDir(), DEFAULT_LOG_FILENAME);
+        this.ensureLogDir();
+    }
+    getLogPath() {
+        return this.logPath;
+    }
+    info(message, data) {
+        this.write("info", message, data);
+    }
+    warn(message, data) {
+        this.write("warn", message, data);
+    }
+    error(message, error, data) {
+        const errorData = { ...data };
+        if (error instanceof Error) {
+            errorData.error_message = error.message;
+            errorData.error_stack = error.stack;
+        }
+        else if (error !== undefined) {
+            errorData.error_message = String(error);
+        }
+        this.write("error", message, errorData);
+    }
+    /** Log the start of a full analyzer run */
+    runStart(projectCount) {
+        this.info("Analyzer run started", {
+            event: "run_start",
+            project_count: projectCount,
+            pid: process.pid,
+        });
+    }
+    /** Log that a project was skipped (with reason) */
+    projectSkipped(projectId, projectName, reason) {
+        this.info(`Skipped ${projectName}`, {
+            event: "project_skipped",
+            project_id: projectId,
+            project_name: projectName,
+            reason,
+        });
+    }
+    /** Log the start of a project analysis */
+    projectStart(projectId, projectName, newObservations, totalObservations) {
+        this.info(`Processing ${projectName}`, {
+            event: "project_start",
+            project_id: projectId,
+            project_name: projectName,
+            new_observations: newObservations,
+            total_observations: totalObservations,
+        });
+    }
+    /** Log per-project results after analysis completes */
+    projectComplete(stats) {
+        const durationSec = (stats.duration_ms / 1000).toFixed(1);
+        const costFormatted = stats.cost_usd.toFixed(4);
+        this.info(`Completed ${stats.project_name} in ${durationSec}s - ` +
+            `tokens: ${stats.tokens_total}, cost: $${costFormatted}, ` +
+            `instincts: +${stats.instincts_created} ~${stats.instincts_updated} -${stats.instincts_deleted}`, { event: "project_complete", ...stats });
+    }
+    /** Log a project that errored during analysis */
+    projectError(projectId, projectName, error) {
+        this.error(`Error processing ${projectName}`, error, {
+            event: "project_error",
+            project_id: projectId,
+            project_name: projectName,
+        });
+    }
+    /** Log the full run summary */
+    runComplete(summary) {
+        const durationSec = (summary.total_duration_ms / 1000).toFixed(1);
+        const costFormatted = summary.total_cost_usd.toFixed(4);
+        this.info(`Run complete in ${durationSec}s - ` +
+            `${summary.projects_processed}/${summary.projects_total} projects processed, ` +
+            `${summary.projects_skipped} skipped, ${summary.projects_errored} errored - ` +
+            `tokens: ${summary.total_tokens}, cost: $${costFormatted}, ` +
+            `instincts: +${summary.total_instincts_created} ~${summary.total_instincts_updated} -${summary.total_instincts_deleted}`, { event: "run_complete", ...summary });
+    }
+    // -------------------------------------------------------------------------
+    // Internal
+    // -------------------------------------------------------------------------
+    ensureLogDir() {
+        try {
+            mkdirSync(dirname(this.logPath), { recursive: true });
+        }
+        catch {
+            // Best effort
+        }
+    }
+    write(level, message, data) {
+        const entry = {
+            timestamp: new Date().toISOString(),
+            level,
+            message,
+            ...data,
+        };
+        const line = JSON.stringify(entry) + "\n";
+        try {
+            this.rotateIfNeeded();
+            appendFileSync(this.logPath, line, "utf-8");
+        }
+        catch {
+            // Fall back to stderr - never lose log entries entirely
+            process.stderr.write(`[analyze] ${line}`);
+        }
+    }
+    rotateIfNeeded() {
+        try {
+            const stat = statSync(this.logPath);
+            if (stat.size > MAX_LOG_SIZE_BYTES) {
+                renameSync(this.logPath, this.logPath + ".old");
+            }
+        }
+        catch {
+            // File doesn't exist yet or stat failed - fine
+        }
+    }
+}
+//# sourceMappingURL=analyze-logger.js.map

package/dist/cli/analyze-logger.js.map

@@ -0,0 +1 @@
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package/dist/cli/analyze-prompt.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"analyze-prompt.d.ts","sourceRoot":"","sources":["../../src/cli/analyze-prompt.ts"],"names":[],"mappings":"AAAA,wBAAgB,yBAAyB,IAAI,MAAM,CA0FlD"}

package/dist/cli/analyze-prompt.js

@@ -30,6 +30,26 @@ Analyze observations for these categories:
 - Actions that consistently lead to errors or user corrections
 - Trigger: the bad pattern situation; Action: what to do instead
 
+### Turn Structure
+- turn_start/turn_end events group tool calls into LLM response cycles
+- Look for recurring tool sequences within turns (e.g. grep→read→edit)
+- tool_count and error_count on turn_end summarize the turn
+- High error_count turns suggest inefficient approaches
+
+### Context Pressure
+- session_compact events signal context window pressure
+- Frequent compaction correlated with specific tool patterns may indicate waste
+- tokens_used on turn_end and agent_end tracks token consumption
+
+### User Shell Commands
+- user_bash events capture manual shell commands the user runs
+- Repeated commands after agent actions reveal verification patterns
+- These are behaviors the agent should learn to do proactively
+
+### Model Preferences
+- model_select events track when users switch models
+- Patterns in model switching reveal task-complexity preferences
+
 ## Feedback Analysis
 
 Each observation may include an active_instincts field listing instinct IDs

package/dist/cli/analyze-prompt.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analyze-prompt.js","sourceRoot":"","sources":["../../src/cli/analyze-prompt.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,yBAAyB;IACvC,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;uGAwF8F,CAAC;AACxG,CAAC"}

package/dist/cli/analyze.js

@@ -12,11 +12,12 @@ import { buildAnalyzerSystemPrompt } from "./analyze-prompt.js";
 import { createInstinctListTool, createInstinctReadTool, createInstinctWriteTool, createInstinctDeleteTool, } from "../instinct-tools.js";
 import { readAgentsMd } from "../agents-md.js";
 import { homedir } from "node:os";
+import { AnalyzeLogger } from "./analyze-logger.js";
 // ---------------------------------------------------------------------------
-// Lockfile guard — ensures only one instance runs at a time
+// Lockfile guard - ensures only one instance runs at a time
 // ---------------------------------------------------------------------------
 const LOCKFILE_NAME = "analyze.lock";
-const LOCK_STALE_MS = 10 * 60 * 1000; // 10 minutes — stale lock threshold
+const LOCK_STALE_MS = 10 * 60 * 1000; // 10 minutes - stale lock threshold
 function getLockfilePath(baseDir) {
     return join(baseDir, LOCKFILE_NAME);
 }
@@ -33,14 +34,14 @@ function acquireLock(baseDir) {
                 if (age < LOCK_STALE_MS) {
                     return false; // Process alive and lock is fresh
                 }
-                // Process alive but lock is stale — treat as abandoned
+                // Process alive but lock is stale - treat as abandoned
             }
             catch {
-                // Process is dead — lock is orphaned, safe to take over
+                // Process is dead - lock is orphaned, safe to take over
             }
         }
         catch {
-            // Malformed lockfile — remove and proceed
+            // Malformed lockfile - remove and proceed
         }
     }
     writeFileSync(lockPath, JSON.stringify({ pid: process.pid, started_at: new Date().toISOString() }), "utf-8");
@@ -53,19 +54,55 @@ function releaseLock(baseDir) {
             unlinkSync(lockPath);
     }
     catch {
-        // Best effort — don't crash on cleanup
+        // Best effort - don't crash on cleanup
     }
 }
 // ---------------------------------------------------------------------------
 // Global timeout
 // ---------------------------------------------------------------------------
 const DEFAULT_TIMEOUT_MS = 5 * 60 * 1000; // 5 minutes total
-function startGlobalTimeout(timeoutMs) {
+function startGlobalTimeout(timeoutMs, logger) {
     setTimeout(() => {
-        console.error("[analyze] Global timeout reached. Exiting.");
+        logger.error("Global timeout reached, forcing exit");
         process.exit(2);
     }, timeoutMs).unref();
 }
+/**
+ * Wraps instinct tools to count create/update/delete operations.
+ * Returns new tool instances that increment the provided counts.
+ */
+function wrapInstinctToolsWithTracking(projectId, projectName, baseDir, counts) {
+    const writeTool = createInstinctWriteTool(projectId, projectName, baseDir);
+    const deleteTool = createInstinctDeleteTool(projectId, baseDir);
+    const trackedWrite = {
+        ...writeTool,
+        async execute(toolCallId, params, signal, onUpdate, ctx) {
+            const result = await writeTool.execute(toolCallId, params, signal, onUpdate, ctx);
+            const details = result.details;
+            if (details?.action === "created") {
+                counts.created++;
+            }
+            else {
+                counts.updated++;
+            }
+            return result;
+        },
+    };
+    const trackedDelete = {
+        ...deleteTool,
+        async execute(toolCallId, params, signal, onUpdate, ctx) {
+            const result = await deleteTool.execute(toolCallId, params, signal, onUpdate, ctx);
+            counts.deleted++;
+            return result;
+        },
+    };
+    return {
+        listTool: createInstinctListTool(projectId, baseDir),
+        readTool: createInstinctReadTool(projectId, baseDir),
+        writeTool: trackedWrite,
+        deleteTool: trackedDelete,
+    };
+}
 function loadProjectsRegistry(baseDir) {
     const path = getProjectsRegistryPath(baseDir);
     if (!existsSync(path))
@@ -104,19 +141,23 @@ function hasNewObservations(projectId, meta, baseDir) {
     }
     return true;
 }
-async function analyzeProject(project, config, baseDir) {
+async function analyzeProject(project, config, baseDir, logger) {
     const meta = loadProjectMeta(project.id, baseDir);
-    if (!hasNewObservations(project.id, meta, baseDir))
-        return false;
+    if (!hasNewObservations(project.id, meta, baseDir)) {
+        return { ran: false, skippedReason: "no new observations" };
+    }
     const obsPath = getObservationsPath(project.id, baseDir);
     const sinceLineCount = meta.last_observation_line_count ?? 0;
     const { lines: newObsLines, totalLineCount } = tailObservationsSince(obsPath, sinceLineCount);
-    if (newObsLines.length === 0)
-        return false;
+    if (newObsLines.length === 0) {
+        return { ran: false, skippedReason: "no new observation lines" };
+    }
     const obsCount = countObservations(project.id, baseDir);
-    if (obsCount < config.min_observations_to_analyze)
-        return false;
-    console.log(`[analyze] Processing ${project.name} (${project.id}): ${newObsLines.length} new observations (${obsCount} total)`);
+    if (obsCount < config.min_observations_to_analyze) {
+        return { ran: false, skippedReason: `below threshold (${obsCount}/${config.min_observations_to_analyze})` };
+    }
+    const startTime = Date.now();
+    logger.projectStart(project.id, project.name, newObsLines.length, obsCount);
     runDecayPass(project.id, baseDir);
     const instinctsDir = join(getProjectDir(project.id, baseDir), "instincts", "personal");
     const agentsMdProject = readAgentsMd(join(project.root, "AGENTS.md"));
@@ -131,7 +172,7 @@ async function analyzeProject(project, config, baseDir) {
         }));
     }
     catch {
-        // Skills loading is best-effort — continue without them
+        // Skills loading is best-effort - continue without them
     }
     const userPrompt = buildAnalyzerUserPrompt(obsPath, instinctsDir, project, {
         agentsMdProject,
@@ -143,11 +184,14 @@ async function analyzeProject(project, config, baseDir) {
     const modelRegistry = new ModelRegistry(authStorage);
     const modelId = (config.model || DEFAULT_CONFIG.model);
     const model = getModel("anthropic", modelId);
+    // Track instinct operations
+    const instinctCounts = { created: 0, updated: 0, deleted: 0 };
+    const trackedTools = wrapInstinctToolsWithTracking(project.id, project.name, baseDir, instinctCounts);
     const customTools = [
-        createInstinctListTool(project.id, baseDir),
-        createInstinctReadTool(project.id, baseDir),
-        createInstinctWriteTool(project.id, project.name, baseDir),
-        createInstinctDeleteTool(project.id, baseDir),
+        trackedTools.listTool,
+        trackedTools.readTool,
+        trackedTools.writeTool,
+        trackedTools.deleteTool,
     ];
     const loader = new DefaultResourceLoader({
         systemPromptOverride: () => buildAnalyzerSystemPrompt(),
@@ -167,40 +211,88 @@ async function analyzeProject(project, config, baseDir) {
     finally {
         session.dispose();
     }
+    // Collect stats after session completes
+    const sessionStats = session.getSessionStats();
+    const durationMs = Date.now() - startTime;
+    const stats = {
+        project_id: project.id,
+        project_name: project.name,
+        duration_ms: durationMs,
+        observations_processed: newObsLines.length,
+        observations_total: obsCount,
+        instincts_created: instinctCounts.created,
+        instincts_updated: instinctCounts.updated,
+        instincts_deleted: instinctCounts.deleted,
+        tokens_input: sessionStats.tokens.input,
+        tokens_output: sessionStats.tokens.output,
+        tokens_cache_read: sessionStats.tokens.cacheRead,
+        tokens_cache_write: sessionStats.tokens.cacheWrite,
+        tokens_total: sessionStats.tokens.total,
+        cost_usd: sessionStats.cost,
+        model: modelId,
+    };
+    logger.projectComplete(stats);
     saveProjectMeta(project.id, { ...meta, last_analyzed_at: new Date().toISOString(), last_observation_line_count: totalLineCount }, baseDir);
-    console.log(`[analyze] Completed ${project.name}`);
-    return true;
+    return { ran: true, stats };
 }
 // ---------------------------------------------------------------------------
 // Main
 // ---------------------------------------------------------------------------
 async function main() {
     const baseDir = getBaseDir();
+    const config = loadConfig();
+    const logger = new AnalyzeLogger(config.log_path);
     if (!acquireLock(baseDir)) {
-        console.log("[analyze] Another instance is already running. Exiting.");
+        logger.info("Another instance is already running, exiting");
         process.exit(0);
     }
-    startGlobalTimeout(DEFAULT_TIMEOUT_MS);
+    startGlobalTimeout(DEFAULT_TIMEOUT_MS, logger);
+    const runStart = Date.now();
     try {
-        const config = loadConfig();
         const registry = loadProjectsRegistry(baseDir);
         const projects = Object.values(registry);
         if (projects.length === 0) {
-            console.log("[analyze] No projects registered. Use pi with the continuous-learning extension first.");
+            logger.info("No projects registered");
             return;
         }
+        logger.runStart(projects.length);
         let processed = 0;
+        let skipped = 0;
+        let errored = 0;
+        const allProjectStats = [];
         for (const project of projects) {
             try {
-                const didRun = await analyzeProject(project, config, baseDir);
-                if (didRun)
+                const result = await analyzeProject(project, config, baseDir, logger);
+                if (result.ran && result.stats) {
                     processed++;
+                    allProjectStats.push(result.stats);
+                }
+                else {
+                    skipped++;
+                    if (result.skippedReason) {
+                        logger.projectSkipped(project.id, project.name, result.skippedReason);
+                    }
+                }
             }
             catch (err) {
-                console.error(`[analyze] Error processing ${project.name}: ${String(err)}`);
+                errored++;
+                logger.projectError(project.id, project.name, err);
             }
         }
-        console.log(`[analyze] Done. Processed ${processed}/${projects.length} project(s).`);
+        const summary = {
+            total_duration_ms: Date.now() - runStart,
+            projects_processed: processed,
+            projects_skipped: skipped,
+            projects_errored: errored,
+            projects_total: projects.length,
+            total_tokens: allProjectStats.reduce((sum, s) => sum + s.tokens_total, 0),
+            total_cost_usd: allProjectStats.reduce((sum, s) => sum + s.cost_usd, 0),
+            total_instincts_created: allProjectStats.reduce((sum, s) => sum + s.instincts_created, 0),
+            total_instincts_updated: allProjectStats.reduce((sum, s) => sum + s.instincts_updated, 0),
+            total_instincts_deleted: allProjectStats.reduce((sum, s) => sum + s.instincts_deleted, 0),
+            project_stats: allProjectStats,
+        };
+        logger.runComplete(summary);
     }
     finally {
         releaseLock(baseDir);
@@ -208,7 +300,9 @@ async function main() {
 }
 main().catch((err) => {
     releaseLock(getBaseDir());
-    console.error(`[analyze] Fatal error: ${String(err)}`);
+    // Last-resort logging - config may not have loaded
+    const logger = new AnalyzeLogger();
+    logger.error("Fatal error", err);
     process.exit(1);
 });
 //# sourceMappingURL=analyze.js.map

package/dist/cli/analyze.js.map

@@ -1 +1 @@
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