phyloio 2.2.3 → 2.2.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (4) hide show
  1. package/dist/phylo.js +1 -1
  2. package/dist-jest/phylo.js +1 -1
  3. package/package.json +1 -1
  4. package/src/interface.js +5 -6
package/dist/phylo.js CHANGED
@@ -8636,7 +8636,7 @@ eval("__webpack_require__.r(__webpack_exports__);\n/* harmony export */ __webpac
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  /***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
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  "use strict";
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- eval("__webpack_require__.r(__webpack_exports__);\n/* harmony export */ __webpack_require__.d(__webpack_exports__, {\n/* harmony export */ \"default\": () => (/* binding */ Interface)\n/* harmony export */ });\n/* harmony import */ var file_saver__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! file-saver */ \"./node_modules/file-saver/dist/FileSaver.min.js\");\n/* harmony import */ var file_saver__WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(file_saver__WEBPACK_IMPORTED_MODULE_0__);\n/* harmony import */ var d3__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! d3 */ \"./node_modules/d3/index.js\");\n/* harmony import */ var bootstrap__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! bootstrap */ \"./node_modules/bootstrap/dist/js/bootstrap.esm.js\");\n/* harmony import */ var d3_scale_chromatic__WEBPACK_IMPORTED_MODULE_4__ = __webpack_require__(/*! d3-scale-chromatic */ \"./node_modules/d3-scale-chromatic/src/index.js\");\n/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_3__ = __webpack_require__(/*! ./utils */ \"./src/utils.js\");\n/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_3___default = /*#__PURE__*/__webpack_require__.n(_utils__WEBPACK_IMPORTED_MODULE_3__);\n\n\n\n\n\n\n// D3 viewer Interface that render UI elements(buttons, slider, menu)\nclass Interface {\n\n constructor(v,c, empty_mode){\n\n var empty_mode = (typeof empty_mode !== 'undefined') ? empty_mode : false;\n\n this.scale_pixel_length = 120;\n\n this.container_object = c\n this.viewer = v\n this.container_d3 = v.container_d3\n this.api = this.container_object.api\n\n //MISC\n this.dismiss_blur = false\n\n this.examples={\n \"small1\": \"((yli:1.0085614391793067,(((lel:0.2880678599618948,(cal:0.11643570498932501,ctr:0.12746420698315983):0.0877413194006926):0.12449843844102518,pst:0.20187483296288805):0.04951181210826987,(pgu:0.3208350693977453,dha:0.19121342958249643):0.0444880656387921):0.3761988962574594):0.22545281705785974,(((kla:0.32829009627835226,ago:0.35217085340006204):0.057415467336693615,(skl:0.15813405639248146,kwa:0.25658337062111586):0.04348414441988464):0.036897766465122404,(cgl:0.29957965624763355,(sca:0.24212307199678842,(sba:0.03984952076326609,(((sce:0.022286259220280224,spa:0.016875934069075366):0.01282179619059339,smi:0.03661027033511007):0.013312280806766753,sku:0.042685124078088485):0.014142671709463695):0.17548658899657893):0.03625000527459598):0.08921537612721808):0.22545281705785974):0;\",\n \"small2\": \"((sba:0.04645932805874481569,(smi:0.03315550229946162553,(spa:0.01466907419174275952,sce:0.02383733069302066895):0.01620853054082276729):0.01834962617511207497):0.06496501071301066799,(sca:0.21928497146352055047,((((ago:0.34529718349701971070,kla:0.26611733077459831520):0.04460721000595434249,(kwa:0.23458417353426505580,skl:0.38245746198409408256):0.02217438839159899949):0.02847427462232336726,(((pst:0.21220493191897629726,((cal:0.09792303271040220247,ctr:0.11778282966461572911):0.07993742108354510989,lel:0.23757786374413303321):0.09896075353236584438):0.04667831716440219020,(pgu:0.28475663985974825065,dha:0.17797706546403241346):0.04249479494672471491):0.29326816910580705278,yli:0.72911704942210797675):0.31199925135971823265):0.06946141605430436461,cgl:0.27125751484306920291):0.03678319509837457008):0.09011350505801994648,sku:3.28511106679567399524):0.0;\",\n \"big\": 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\"stack\" : {\"children\": [{\"children\": [{\"children\": [{\"children\": [{\"id\": \"HALHT\", \"last_updated\": \"Aug 20, 2012\", \"name\": \"Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755)\", \"nr_proteins\": 3855, \"release\": \"18-OCT-2011 (Rel. 110, Last updated, Version 2)\", \"source\": \"EBI\", \"taxid\": 634497}, {\"id\": \"HALMA\", \"last_updated\": \"Mar 25, 2014\", \"name\": \"Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)\", \"nr_proteins\": 4231, \"release\": \"02-FEB-2014 (Rel. 119, Last updated, Version 9)\", \"source\": \"EBI\", \"taxid\": 272569}], \"name\": \"Haloarcula\", \"taxid\": 2237, \"nr_hogs\": 4107, \"evolutionaryEvents\": {\"gained\": 178, \"retained\": 3532, \"duplicated\": 397, \"lost\": 1508, \"duplications\": 166}}, {\"id\": \"HALMD\", \"last_updated\": \"Nov 23, 2009\", \"name\": \"Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541)\", 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\"name\": \"Natronomonas\", \"taxid\": 63743, \"nr_hogs\": 3156, \"evolutionaryEvents\": {\"gained\": 93, \"lost\": 2294, \"duplicated\": 254, \"retained\": 2809, \"duplications\": 103}}], \"name\": \"Haloarculaceae\", \"taxid\": 1963268, \"nr_hogs\": 5206, \"evolutionaryEvents\": {\"gained\": 273, \"retained\": 4584, \"duplicated\": 349, \"lost\": 1040, \"duplications\": 163}}, {\"children\": [{\"id\": \"HALJB\", \"last_updated\": \"Dec 23, 2010\", \"name\": \"Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3)\", \"nr_proteins\": 3779, \"release\": \"30-NOV-2010 (Rel. 127, Last updated, Version 2)\", \"source\": \"Genome Reviews\", \"taxid\": 795797}, {\"children\": [{\"id\": \"HALS3\", \"last_updated\": \"May 8, 2008\", \"name\": \"Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)\", \"nr_proteins\": 2742, \"release\": \"29-APR-2008 (Rel. 90, Last updated, Version 1)\", \"source\": \"Genome Reviews\", \"taxid\": 478009}, {\"id\": \"HALSA\", 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.002093[&&NHX:D=N:B=100:T=9596],ENSP00000369497:0.001566[&&NHX:D=N:T=9606]):0.000219[&&NHX:D=N:B=17:T=207598],ENSGGOP00000027226:0.002031[&&NHX:D=N:T=9595]):0.004252[&&NHX:D=N:B=17:T=207598],ENSPPYP00000005997:0.007072[&&NHX:D=N:T=9601]):0.002903[&&NHX:D=N:B=99:T=9604],ENSNLEP00000001277:0.009571[&&NHX:D=N:T=61853]):0.002446[&&NHX:D=N:B=98:T=314295],(((((ENSCATP00000015406:0.00209[&&NHX:D=N:T=9531],ENSMLEP00000025266:0.0034[&&NHX:D=N:T=9568]):0.000372[&&NHX:D=N:B=60:T=9528],ENSPANP00000022490:0.001777[&&NHX:D=N:T=9555]):0.000724[&&NHX:D=N:B=54:T=9528],((ENSMFAP00000029418:0.001032[&&NHX:D=N:T=9541],ENSMMUP00000009432:0.005844[&&NHX:D=N:T=9544]):0.000105[&&NHX:D=N:B=40:T=9539],ENSMNEP00000025034:0.002176[&&NHX:D=N:T=9545]):0.001473[&&NHX:D=N:B=34:T=9539]):0.000352[&&NHX:D=N:B=54:T=9528],ENSCSAP00000013938:0.003981[&&NHX:D=N:T=60711]):0.00179[&&NHX:D=N:B=55:T=9528],(ENSRROP00000030947:0[&&NHX:D=N:T=61622],ENSRBIP00000000297:0.022474[&&NHX:D=N:T=61621]):0.008142[&&NHX:D=N:B=92:T=542827]):0.008355[&&NHX:D=N:B=58:T=9527]):0.007639[&&NHX:D=N:B=87:T=9526],((ENSCCAP00000031676:0.011669[&&NHX:D=N:T=2715852],ENSCJAP00000093240:0.015902[&&NHX:D=N:T=9483]):0.000332[&&NHX:D=N:B=23:T=9498],ENSANAP00000015411:0.01113[&&NHX:D=N:T=37293]):0.015231[&&NHX:D=N:B=23:T=9479]):0.029405[&&NHX:D=N:B=92:T=314293],ENSTSYP00000000441:0.060665[&&NHX:D=N:T=1868482]):0.003827[&&NHX:D=N:B=90:T=376913],(((ENSPCOP00000008219:0.014484[&&NHX:D=N:T=379532],ENSMICP00000044704:0.023431[&&NHX:D=N:T=30608]):0.001594[&&NHX:D=N:B=93:T=376915],ENSPSMP00000026900:0.017253[&&NHX:D=N:T=1328070]):0.012285[&&NHX:D=N:B=93:T=376915],ENSOGAP00000009477:0.064918[&&NHX:D=N:T=30611]):0.013645[&&NHX:D=N:B=99:T=376911]):0.005986[&&NHX:D=N:B=89:T=9443]):0.009172[&&NHX:D=N:B=12:T=314146]):0.008774[&&NHX:D=N:B=12:T=1437010],(ENSDNOP00000034947:0.046866[&&NHX:D=N:T=9361],ENSCHOP00000007822:0.050851[&&NHX:D=N:T=9358]):0.025312[&&NHX:D=N:B=100:T=9348]):0.006165[&&NHX:D=N:B=15:T=9347],((ENSETEP00000003277:0.154194[&&NHX:D=N:T=9371],ENSPCAP00000000440:0.17644[&&NHX:D=N:T=9813]):0.023418[&&NHX:D=N:B=93:T=311790],ENSLAFP00000002234:0.069853[&&NHX:D=N:T=9785]):0.048728[&&NHX:D=N:B=91:T=311790]):0.102726[&&NHX:D=N:B=69:T=9347],(((ENSVURP00010026286:0.02893[&&NHX:D=N:T=29139],ENSMEUP00000009812:0.045949[&&NHX:D=N:T=9315]):0.007079[&&NHX:D=N:B=96:T=38609],ENSSHAP00000012162:0.055381[&&NHX:D=N:T=9305]):0.015112[&&NHX:D=N:B=96:T=9263],ENSMODP00000033276:0.071803[&&NHX:D=N:T=13616]):0.123926[&&NHX:D=N:B=96:T=9263]):0.06077[&&NHX:D=N:B=87:T=32525],ENSOANP00000039689:0.264045[&&NHX:D=N:T=9258]):0.091853[&&NHX:D=N:B=90:T=40674],((((ENSPMRP00000005460:0.144183[&&NHX:D=N:T=64176],ENSSMRP00000016793:0.20051[&&NHX:D=N:T=96440]):0.009903[&&NHX:D=N:B=99:T=1329976],((ENSNSUP00000017478:0.005634[&&NHX:D=N:T=8663],ENSLLTP00000016858:0.029105[&&NHX:D=N:T=8630]):0.226094[&&NHX:D=N:B=100:T=8602],ENSACAP00000031108:0.186787[&&NHX:D=N:T=28377]):0.032366[&&NHX:D=N:B=7:T=1329911]):0.135778[&&NHX:D=N:B=3:T=1329912],ENSSPUP00000018703:0.144411[&&NHX:D=N:T=8508]):0.0332[&&NHX:D=N:B=0:T=8504],((((((ENSACCP00020021048:0.030244[&&NHX:D=N:T=223781],ENSSHBP00005016070:0.046241[&&NHX:D=N:T=2489341]):0.000673[&&NHX:D=N:B=100:T=8825],((((ENSGFOP00000022131:0.015965[&&NHX:D=N:T=48883],ENSSCAP00000011543:0.017989[&&NHX:D=N:T=9135]):0.005354[&&NHX:D=N:B=100:T=9126],ENSTGUP00000012130:0.02239[&&NHX:D=N:T=59729]):0.005211[&&NHX:DD=Y:B=100:T=9126],ENSPMJP00000020154:0.031769[&&NHX:D=N:T=9157]):0.0011[&&NHX:D=N:B=13:T=9126],ENSFALP00000008821:0.024057[&&NHX:D=N:T=59894]):0.055526[&&NHX:D=N:B=13:T=9126]):0.017918[&&NHX:D=N:B=100:T=8825],(((ENSGALP00000027524:0.023757[&&NHX:D=N:T=9031],ENSMGAP00000015990:0.025887[&&NHX:D=N:T=9103]):0.000864[&&NHX:D=N:B=94:T=9005],ENSCJPP00005026171:0.031852[&&NHX:D=N:T=93934]):0.055074[&&NHX:D=N:B=94:T=9005],ENSAPLP00000007411:0.069477[&&NHX:D=N:T=8840]):0.021576[&&NHX:D=N:B=100:T=1549675]):0.027956[&&NHX:D=N:B=98:T=8825],ENSSCUP00000019773:0.055174[&&NHX:D=N:T=441894]):0.138375[&&NHX:D=N:B=98:T=8782],ENSCPRP00005008306:0.1287[&&NHX:D=N:T=8502]):0.016113[&&NHX:D=N:B=0:T=8492],((((ENSTMTP00000024650:0.004017[&&NHX:D=N:T=2587831],ENSTMTP00000012675:0.005315[&&NHX:D=N:T=2587831]):0.002859[&&NHX:D=Y:B=100:T=2587831],ENSCPBP00000004776:0.007644[&&NHX:D=N:T=8478]):0.005658[&&NHX:D=N:B=100:T=8476],(ENSGEVP00005002652:0.01601[&&NHX:D=N:T=1825980],ENSCABP00000011062:0.022245[&&NHX:D=N:T=106734]):0.009454[&&NHX:D=N:B=99:T=8487]):0.01978[&&NHX:D=N:B=99:T=8486],ENSPSIP00000012858:0.064659[&&NHX:D=N:T=13735]):0.046163[&&NHX:D=N:B=100:T=8464]):0.04067[&&NHX:D=N:B=0:T=1329799]):0.101687[&&NHX:D=N:B=9:T=32561]):0.107575[&&NHX:D=N:B=89:T=32524],(ENSXETP00000037057:0.302164[&&NHX:D=N:T=8364],ENSLLEP00000043860:0.366066[&&NHX:D=N:T=445787]):0.181688[&&NHX:D=N:B=96:T=8342]):0.09645[&&NHX:D=N:B=49:T=32523],ENSLACP00000008815:0.24746[&&NHX:D=N:T=7897]):0.045271[&&NHX:D=N:B=14:T=8287],((((((((((((((ENSTNIP00000002435:0.089877[&&NHX:D=N:T=99883],ENSTRUP00000015030:0.091412[&&NHX:D=N:T=31033]):0.146182[&&NHX:D=N:B=100:T=31031],ENSGACP00000015199:0.143397[&&NHX:D=N:T=69293]):0.009443[&&NHX:D=N:B=0:T=1489922],ENSSAUP00010031327:0.096966[&&NHX:D=N:T=8175]):0.004928[&&NHX:D=N:B=0:T=1489922],(ENSDLAP00005043188:0.096295[&&NHX:D=N:T=13489],ENSLBEP00000002832:0.154656[&&NHX:D=N:T=56723]):0.015316[&&NHX:D=N:B=15:T=1489922]):0.007374[&&NHX:D=N:B=0:T=1489922],(ENSSLUP00000030625:0.065993[&&NHX:D=N:T=283035],ENSCGOP00000037196:0.066502[&&NHX:D=N:T=56716]):0.014978[&&NHX:D=N:B=91:T=8111]):0.014192[&&NHX:DD=Y:B=0:T=1489922],(((ENSMAMP00000049017:0.112322[&&NHX:D=N:T=205130],ENSBSLP00000034562:0.168852[&&NHX:D=N:T=158456]):0.008315[&&NHX:D=N:B=0:T=1489892],((ENSSDUP00000015520:0.00513[&&NHX:D=N:T=41447],ENSSLDP00000006566:0.007791[&&NHX:D=N:T=1841481]):0.042577[&&NHX:D=N:B=100:T=8160],ENSLCAP00010030231:0.060104[&&NHX:D=N:T=8187]):0.016173[&&NHX:D=N:B=93:T=1489904]):0[&&NHX:D=N:B=0:T=1489872],(ENSSMAP00000010386:0.11135[&&NHX:D=N:T=52904],ENSATEP00000018320:0.126751[&&NHX:D=N:T=64144]):0.003595[&&NHX:D=N:B=14:T=1489872]):0.014963[&&NHX:DD=Y:B=0:T=1489872]):0.008717[&&NHX:D=N:B=0:T=1489872],(((ENSAOCP00000005723:0.022605[&&NHX:D=N:T=80972],ENSAPOP00000003431:0.032376[&&NHX:D=N:T=80966]):0.067976[&&NHX:D=N:B=100:T=30863],(((ENSMZEP00005015140:0.002522[&&NHX:D=N:T=106582],ENSHBUP00000022221:0.00276[&&NHX:D=N:T=8153]):0.005622[&&NHX:D=N:B=100:T=319058],ENSNBRP00000031193:0.014221[&&NHX:D=N:T=32507]):0.055295[&&NHX:D=N:B=100:T=318546],ENSACIP00000005496:0.085203[&&NHX:D=N:T=61819]):0.069808[&&NHX:D=N:B=97:T=8113]):0.006383[&&NHX:D=N:B=72:T=1489908],(((((((ENSPFOP00000001575:0.001877[&&NHX:D=N:T=48698],ENSPLAP00000026811:0.002682[&&NHX:D=N:T=48699]):0.011341[&&NHX:D=N:B=100:T=8080],ENSPREP00000018297:0.014432[&&NHX:D=N:T=8081]):0.009367[&&NHX:D=N:B=100:T=8080],ENSXMAP00000006983:0.020943[&&NHX:D=N:T=8083]):0.07372[&&NHX:D=N:B=100:T=586240],ENSFHEP00000010259:0.090262[&&NHX:D=N:T=8078]):0.010081[&&NHX:D=N:B=100:T=8087],ENSCVAP00000010146:0.166223[&&NHX:D=N:T=28743]):0.099285[&&NHX:D=N:B=100:T=8087],ENSKMAP00000010397:0.154786[&&NHX:D=N:T=37003]):0.018665[&&NHX:D=N:B=11:T=28738],((ENSORLP00000039367:0.012182[&&NHX:D=N:T=8090],ENSOSIP00000028295:0.023719[&&NHX:D=N:T=183150]):0.048352[&&NHX:D=N:B=100:T=8089],ENSOMEP00000001576:0.066811[&&NHX:D=N:T=30732]):0.195635[&&NHX:D=N:B=100:T=8089]):0.03392[&&NHX:D=N:B=9:T=1489913]):0.027302[&&NHX:D=N:B=0:T=1489908]):0.081822[&&NHX:D=N:B=0:T=1489872],ENSMMDP00005016864:0.115686[&&NHX:D=N:T=586833]):0.133158[&&NHX:D=N:B=0:T=123369],ENSGMOP00000010385:0.447969[&&NHX:D=N:T=8049]):0.04027[&&NHX:D=N:B=1:T=123368],(((ENSSSAP00000049301:0.003158[&&NHX:D=N:T=8030],ENSSTUP00000089299:0.005224[&&NHX:D=N:T=8032]):0.007814[&&NHX:D=N:B=100:T=8028],((ENSOTSP00005006826:0.003553[&&NHX:D=N:T=74940],ENSOKIP00005016504:0.004245[&&NHX:D=N:T=8019]):0.001513[&&NHX:D=N:B=95:T=8016],ENSOMYP00000096229:0.004581[&&NHX:D=N:T=8022]):0.012062[&&NHX:D=N:B=95:T=8016]):0.008081[&&NHX:D=N:B=79:T=504568],ENSHHUP00000013710:0.009428[&&NHX:D=N:T=62062]):0.220475[&&NHX:D=N:B=79:T=504568]):0.063675[&&NHX:D=N:B=0:T=1489388],((((ENSPNAP00000002089:0.088107[&&NHX:D=N:T=42514],ENSAMXP00000037719:0.141689[&&NHX:D=N:T=7994]):0.040456[&&NHX:D=N:B=100:T=1489739],ENSEEEP00000018632:0.175328[&&NHX:D=N:T=8005]):0.011488[&&NHX:D=N:B=52:T=186628],ENSIPUP00000019387:0.191507[&&NHX:D=N:T=7998]):0.130849[&&NHX:D=N:B=52:T=186628],((((ENSCCRP00000004504:0.013011[&&NHX:D=N:T=7962],ENSSGRP00000031158:0.015922[&&NHX:D=N:T=75366]):0.000854[&&NHX:D=N:B=100:T=2743694],ENSCARP00000056251:0.028035[&&NHX:D=N:T=7957]):0.0219[&&NHX:D=N:B=100:T=2743694],ENSSGRP00000071274:0.037074[&&NHX:D=N:T=75366]):0.035154[&&NHX:D=Y:B=100:T=2743694],ENSDARP00000099674:0.101043[&&NHX:D=N:T=7955]):0.247776[&&NHX:D=N:B=100:T=30727]):0.127786[&&NHX:D=N:B=98:T=186626]):0.062612[&&NHX:D=N:B=25:T=186625],(ENSPKIP00000013632:0.279788[&&NHX:D=N:T=1676925],ENSSFOP00015002218:0.291858[&&NHX:D=N:T=113540]):0.102594[&&NHX:D=N:B=88:T=41712]):0.110179[&&NHX:D=N:B=0:T=1489341],ENSLOCP00000009962:0.210021[&&NHX:D=N:T=7918]):0.138094[&&NHX:D=N:B=2:T=41665],ENSECRP00000005112:0.560007[&&NHX:D=N:T=27687]):0.12002[&&NHX:D=N:B=55:T=7898]):0.072614[&&NHX:D=N:B=3:T=117571],ENSCMIP00000046776:0.395803[&&NHX:D=N:T=7868]):0.1[&&NHX:D=N:B=4:T=7776],ENSEBUP00000009898:0.958294[&&NHX:D=N:T=7764]):0.1[&&NHX:D=N:B=0:T=7742];\",\n \"nhx2\" : \"((((POP23a_CIOIN_ENSCING00000016202,POP23b_CIOIN_ENSCING00000016169)[&&NHX:Ev=duplication],POP23_CIOSA_ENSCSAVG00000000248),((POP23a_BRAFL_C3ZMF1,POP23b_BRAFL_121417)[&&NHX:Ev=duplication],(((POP3_ORYLA_ENSORLG00000019669,POP3_GASAC_ENSGACG00000014023,POP3_DANRE_Q6JWW1),(POP3_XENTR_B1H1F6,(POP3_CHICK_Q9DG25,(POP3_ORNAN_ENSOANG00000004179,POP3_MONDO_ENSMODG00000018033,((POP3_MOUSE_Q9ES81,POP3_RAT_Q3BCU3),POP3_RABIT_ENSOCUG00000025973,POP3_MACMU_ENSMMUG00000014473,POP3_HUMAN_Q9HBV1))))),(((POP2_GASAC_ENSGACG00000001420,POP2_ORYLA_ENSORLG00000008627,POP2_TAKRU_ENSTRUG00000015933),POP2_DANRE_ENSDARG00000069922),POP2_XENTR_ENSXETG00000018064,(((POP2_TAEGU_ENSTGUG00000013383,POP2_CHICK_Q6T9Z5),POP2_ANOCA_ENSACAG00000003557),((POP2_MACEU_ENSMEUG00000015825,POP2_MONDO_ENSMODG00000018205),((POP2_RABIT_ENSOCUG00000009515,(POP2_RAT_Q6P722,POP2_MOUSE_Q9ES82)),(POP2_MACMU_ENSMMUG00000000905,POP2_HUMAN_Q9HBU9))))))[&&NHX:Ev=duplication])),((POP1_CIOSA_ENSCSAVG00000000247,POP1_CIOIN_ENSCING00000000496),((POP1_DANRE_Q5PQZ7,(POP1_ORYLA_ENSORLG00000019663,POP1_GASAC_ENSGACG00000014015,POP1_TAKRU_ENSORLG00000019663)),(POP1_XENTR_B1H1G2,(POP1_ANOCA_ENSACAG00000003910,(POP1_TAEGU_ENSTGUG00000012218,POP1_CHICK_Q9DG23)),POP1_ORNAN_ENSOANG00000004180,POP1_MONDO_ENSMODG00000018034,(POP1_RABIT_ENSOCUG00000016944,(POP1_RAT_Q3BCU4,POP1_MOUSE_Q9ES83),(POP1_HUMAN_Q8NE79,POP1_MACMU_ENSMMUG00000014471))))))[&&NHX:Ev=duplication];\",\n \"rokas\" : \"(Schizosaccharomyces pombe:0.545914,(Saitoella complicata:0.57412,((Arthrobotrys oligospora:0.539923,((Parastagonospora nodorum:0.465825,(Xylona heveae:0.272728,(Coccidioides immitis:0.254443,Aspergillus nidulans:0.266048)1:0.18207)1:0.041547)1:0.0419986,((Botrytis cinerea:0.0493876,Sclerotinia sclerotiorum:0.0433921)1:0.237364,(Neurospora crassa:0.27673,Fusarium graminearum:0.291175)1:0.153952)1:0.127477)1:0.210957)1:0.198261,(((Lipomyces suomiensis NRRL Y-17356:0.234623,Lipomyces oligophaga NRRL Y-17247:0.370846)1:0.0775974,((Lipomyces japonicus NRRL Y-17848:0.3372,Lipomyces lipofer NRRL Y-11555:0.166258)1:0.0562401,(Lipomyces doorenjongii NRRL Y-27504:0.289327,(Lipomyces kononenkoae NRRL Y-11553:0.0897564,(Lipomyces starkeyi NRRL Y-11557:0.0198789,(Lipomyces mesembrius NRRL Y-27506:0.0193032,Lipomyces arxii NRRL Y-17921:0.0198748)1:0.00839469)1:0.0452686)1:0.113493)1:0.0365204)1:0.0522388)1:0.351588,(((Trigonopsis vinaria NRRL Y-5715:0.32117,Trigonopsis variabilis NRRL Y-1579:0.36434)1:0.434566,(Botryozyma nematodophila NRRL Y-17705:0.702864,(Tortispora starmeri NRRL Y-63665:0.502464,(Tortispora caseinolytica NRRL Y-17796:0.0396928,Tortispora ganteri NRRL Y-17035:0.0458542)1:0.458583)1:0.374135)1:0.158759)1:0.0771598,((((Nadsonia fulvescens var. elongata DSM 6958:0.0202083,Nadsonia fulvescens NRRL Y-12810:0.0176171)1:0.536297,(Candida hispaniensis NRRL Y-5580:0.422522,(Yarrowia bubula NRRL Y-63668:0.0502129,(Yarrowia keelungensis JCM 14894:0.0300806,(Yarrowia lipolytica:0.0264517,(Yarrowia divulgata NRRL Y-63741:0.00987236,Yarrowia deformans JCM 1694:0.0108765)1:0.0239202)1:0.00862142)1:0.0258247)1:0.296485)1:0.408355)1:0.0777756,((Middelhovenomyces tepae NRRL Y-17670:0.443049,((Saprochaete clavata:0.309611,Magnusiomyces tetrasperma NRRL Y-7288:0.34292)1:0.186613,(Galactomyces candidus Phaff 72-186:0.207517,(Dipodascus geniculatus NRRL Y-17628:0.0852517,Dipodascus albidus NRRL Y-12859:0.0862487)1:0.229904)1:0.189193)1:0.149192)1:0.0518788,(((Deakozyma indianensis NRRL YB-1937:0.184702,Candida incommunis NRRL Y-17085:0.20747)1:0.543275,((Wickerhamiella infanticola DS02:0.528425,Wickerhamiella cacticola NRRL Y-27362:0.692381)1:0.075832,(Wickerhamiella versatilis JCM 5958:0.645274,(Wickerhamiella domercqiae:0.626221,(Candida apicola NRRL Y-50540:0.434359,Starmerella bombicola JCM 9596:0.383847)1:0.356841)1:0.0846685)1:0.155283)1:0.413088)1:0.0954418,(((Sugiyamaella lignohabitans CBS 10342:0.411366,(Diddensiella caesifluorescens NRRL Y-48781:0.336519,Spencermartinsiella europaea NRRL Y-48265:0.41893)1:0.0421993)1:0.0384646,(Groenewaldozyma salmanticensis NRRL Y-17090:0.561259,(Zygoascus meyerae NRRL Y-17319:0.366231,Zygoascus ofunaensis NRRL Y-10998:0.397239)1:0.214422)1:0.0535895)1:0.0458319,(Blastobotrys muscicola NRRL Y-7993:0.458918,((Blastobotrys mokoenaii NRRL Y-27120:0.362928,(Blastobotrys proliferans NRRL Y-17577:0.228429,Blastobotrys nivea NRRL Y-17581:0.269851)1:0.158495)1:0.079695,(Blastobotrys serpentis NRRL Y-48249:0.327946,((Blastobotrys raffinosifermentans:0.0217085,Blastobotrys adeninivorans:0.018147)1:0.222596,(Blastobotrys peoriensis NRRL YB-2290:0.169572,Blastobotrys americana NRRL Y-6844:0.161305)1:0.170868)1:0.173794)1:0.0621326)1:0.0484003)1:0.062313)1:0.0537951)1:0.0469088)1:0.0867807)1:0.0634323,((Alloascoidea hylecoeti JCM 7604:0.573891,(Sporopachydermia lactativora NRRL Y-11591:0.293628,Sporopachydermia quercuum JCM 9486:0.229415)1:0.463025)1:0.0601744,((((Ascoidea asiatica JCM 7603:0.367013,Ascoidea rubescens:0.321961)1:0.263464,(Saccharomycopsis capsularis NRRL Y-17639:0.190582,Saccharomycopsis malanga JCM 7620:0.198358)1:0.40498)1:0.163324,((Candida ponderosae NRRL YB-2307:0.38206,((Starmera quercuum NRRL YB-4281:0.250343,(Starmera amethionina NRRL Y-10978:0.208149,Candida stellimalicola NRRL Y-17912:0.200412)1:0.200109)1:0.0953975,((Wickerhamomyces ciferrii NRRL Y-1031:0.190972,Wickerhamomyces anomalus:0.135192)1:0.110022,((Wickerhamomyces hampshirensis NRRL YB-4128:0.251418,(Candida freyschussii:0.200517,((Cyberlindnera xylosilytica NRRL YB-2097:0.171593,(Cyberlindnera fabianii JCM 3601:0.173452,(Cyberlindnera petersonii NRRL YB-3808:0.146495,(Cyberlindnera americana NRRL Y-2156:0.124404,Candida mycetangii NRRL Y-6843:0.138201)1:0.021936)1:0.0555066)1:0.0255677)1:0.104307,((Cyberlindnera mrakii NRRL Y-1364:0.0362246,(Cyberlindnera saturnus NRRL Y-17396:0.0192395,Cyberlindnera suaveolens NRRL Y-17391:0.0161438)1:0.0136523)1:0.121465,((Cyberlindnera jadinii NRRL Y-1542:0.216631,Candida vartiovaarae:0.174307)1:0.0287187,(Cyberlindnera maclurae NRRL Y-5377:0.0723855,Cyberlindnera misumaiensis NRRL Y-17389:0.0590068)1:0.157678)1:0.0254444)1:0.128382)1:0.0244259)1:0.0399877)1:0.0690847,((Wickerhamomyces alni NRRL Y-11625:0.198181,(Wickerhamomyces canadensis NRRL Y-1888:0.0181265,Wickerhamomyces sp.:0.0258553)1:0.152098)1:0.104484,(Wickerhamomyces bovis NRRL YB-4184:0.238507,((Barnettozyma hawaiiensis NRRL Y-27270:0.0769162,(Barnettozyma californica NRRL Y-17395:0.0637227,Barnettozyma populi NRRL Y-12728:0.069715)1:0.012496)1:0.171001,((Barnettozyma pratensis NRRL Y-12696:0.134345,Barnettozyma salicaria NRRL Y-6780:0.201535)1:0.0253729,(Candida montana NRRL Y-17326:0.18273,((Phaffomyces thermotolerans NRRL Y-11709:0.0347558,Candida orba NRRL Y-27336:0.0268361)1:0.0450689,(Phaffomyces opuntiae NRRL Y-11707:0.0227806,Phaffomyces antillensis NRRL Y-12881:0.0381186)1:0.0503677)1:0.136412)1:0.0550969)1:0.0252933)1:0.148508)1:0.0456798)1:0.0515684)1:0.0559147)1:0.0396837)1:0.0394501)1:0.188948,(((Hanseniaspora osmophila NRRL Y-1613:0.0533805,Hanseniaspora vineae:0.0482455)1:0.375889,((Hanseniaspora singularis:0.230831,Hanseniaspora valbyensis NRRL Y-1626:0.170847)1:0.0889552,(Kloeckera hatyaiensis:0.149005,(Hanseniaspora pseudoguilliermondii:0.11701,(Hanseniaspora uvarum:0.0603265,Hanseniaspora clermontiae NRRL Y-27515:0.0811774)1:0.037012)1:0.118708)1:0.169466)1:0.805928)1:0.306057,((((Kluyveromyces aestuarii NRRL YB-4510:0.247878,(Kluyveromyces marxianus CBS6556:0.14186,(Kluyveromyces lactis NRRL Y-1140:0.0794227,Kluyveromyces dobzhanskii NRRL Y-1974:0.107991)1:0.0644926)1:0.119991)1:0.234335,((Eremothecium coryli CBS 5749:0.245286,Eremothecium sinecaudum ATCC 58844:0.262753)1:0.0575176,(Eremothecium cymbalariae DBVPG 7215:0.226178,(Eremothecium gossypii ATCC 10895:0.046311,Ashbya aceri:0.0356574)1:0.257241)1:0.0330026)1:0.17076)1:0.0607471,(Lachancea kluyveri:0.221801,((Lachancea fermentati:0.125926,Lachancea cidri:0.116386)1:0.108281,(Lachancea mirantina:0.360697,((Lachancea waltii:0.155994,(Lachancea quebecensis:0.0412753,Lachancea thermotolerans CBS 6340:0.0381374)1:0.122374)1:0.048069,(Lachancea nothofagi:0.125696,(Lachancea dasiensis:0.187333,(Lachancea meyersii CBS 8951:0.0930237,(Lachancea fantastica:0.0613265,Lachancea lanzarotensis CBS 12615:0.0662562)1:0.080869)1:0.0868343)1:0.0232028)1:0.0796876)1:0.11944)1:0.0368276)1:0.0869217)1:0.0544235)1:0.046723,(((Zygosaccharomyces rouxii CBS 732:0.143413,(Zygosaccharomyces kombuchaensis NRRL YB-4811:0.0926322,(Zygosaccharomyces bisporus NRRL Y-12626:0.083556,Zygosaccharomyces bailii:0.0939337)1:0.0304452)1:0.0574531)1:0.176842,((Zygotorulaspora florentina NRRL Y-1560:0.131232,Zygotorulaspora mrakii NRRL Y-12654:0.168677)1:0.11848,(Torulaspora microellipsoides:0.15825,(Torulaspora maleeae CBS 10694:0.172696,(Torulaspora delbrueckii:0.0799621,(Torulaspora franciscae NRRL Y-17532:0.0354865,Torulaspora pretoriensis NRRL Y-17251:0.0343667)1:0.0834631)1:0.0804511)1:0.0953121)1:0.0235795)1:0.0481102)1:0.0871222,(((Tetrapisispora blattae:0.271746,Yueomyces sinensis NRRL Y-17406:0.347888)1:0.216158,(Vanderwaltozyma polyspora:0.261306,(Tetrapisispora iriomotensis NRRL Y-27309:0.150965,(Tetrapisispora phaffii CBS 4417:0.100885,(Tetrapisispora namnaoensis NRRL Y-27982:0.0531639,Tetrapisispora fleetii NRRL Y-27350:0.0682282)1:0.0667913)1:0.0911273)1:0.204252)1:0.0968006)1:0.049682,((((Nakaseomyces bacillisporus CBS 7720:0.318907,_Candida_ castellii CBS 4332:0.44969)1:0.119593,(_Candida_ glabrata CBS 138:0.19376,(_Candida_ bracarensis CBS 10154:0.0791127,(_Candida_ nivariensis CBS 9983:0.0591139,Nakaseomyces delphensis CBS 2170:0.1071)1:0.0282267)1:0.118561)1:0.24292)1:0.043942,((Saccharomyces uvarum:0.01864,Saccharomyces eubayanus:0.0211527)1:0.0363173,(Saccharomyces arboricola:0.0587131,(Saccharomyces kudriavzevii:0.0570128,(Saccharomyces mikatae IFO 1815:0.0529368,(Saccharomyces paradoxus:0.0250749,Saccharomyces cerevisiae S288C:0.0325262)1:0.0191755)1:0.0192692)1:0.00934172)1:0.0155583)1:0.277733)1:0.0304696,((Naumovozyma dairenensis:0.244773,Naumovozyma castellii:0.223994)1:0.116605,(((Kazachstania africana CBS 2517:0.302329,Kazachstania viticola NRRL Y-27206:0.304357)1:0.0420759,((Kazachstania turicensis NRRL Y-48834:0.232443,Kazachstania kunashirensis NRRL Y-27209:0.160829)1:0.120327,(Kazachstania spencerorum NRRL Y-17920:0.238158,Kazachstania rosinii NRRL Y-17919:0.204563)1:0.0374176)1:0.0694195)1:0.0333483,((Kazachstania intestinalis NRRL Y-48847:0.427517,Kazachstania martiniae NRRL Y-409:0.262551)1:0.0379646,((Kazachstania naganishii CBS 8797:0.335856,Kazachstania bromeliacearum NRRL Y-48836:0.198593)1:0.0338563,(Kazachstania taianensis NRRL Y-48846:0.27887,((Kazachstania transvaalensis NRRL Y-17245:0.111612,Kazachstania yakushimaensis NRRL Y-48837:0.0900106)1:0.290831,(Kazachstania siamensis NRRL Y-48842:0.114965,(Kazachstania unispora NRRL Y-1556:0.0645858,(Kazachstania solicola NRRL Y-27207:0.0241196,Kazachstania aerobia NRRL Y-27976:0.0305719)1:0.0678491)1:0.059458)1:0.1733)1:0.0384928)1:0.0508605)1:0.0761265)1:0.0382292)1:0.0669668)1:0.036691)1:0.0374781)1:0.0230192)1:0.115608)1:0.127779)1:0.342113)1:0.0913588)1:0.0347262,(((Pachysolen tannophilus NRRL Y-2460:0.313751,((Peterozyma xylosa NRRL Y-12939:0.0402272,Peterozyma toletana NRRL YB-4247:0.0398928)1:0.321195,(Nakazawaea peltata JCM 9829:0.323069,Nakazawaea holstii NRRL Y-2155:0.206923)1:0.167264)1:0.0471457)1:0.163091,(((Citeromyces siamensis NRRL Y-27975:0.199314,(Citeromyces hawaiiensis NRRL Y-11581:0.0676646,Citeromyces matritensis NRRL Y-2407:0.0674657)1:0.134721)1:0.41892,(Komagataella pastoris:0.0617151,(Komagataella populi NRRL YB-455:0.0093125,Komagataella pseudopastoris NRRL Y-27603:0.00934262)1:0.0520784)1:0.548169)1:0.0572955,(Kuraishia ogatae NRRL Y-48474:0.423004,((Kuraishia capsulata:0.167402,Kuraishia molischiana NRRL Y-27899:0.174477)1:0.340405,(Candida boidinii JCM 9604:0.409104,((Ogataea methylivora NRRL Y-17250:0.262112,(Ogataea ramenticola NRRL YB-1985:0.331126,(Candida succiphila JCM 9445:0.377882,Ogataea naganishii NRRL Y-7654:0.377342)1:0.0486474)1:0.0581327)1:0.0742491,((((Ogataea nitratoaversa NRRL Y-48449:0.140695,Ogataea pilisensis NRRL Y-27598:0.121524)1:0.101152,(Candida arabinofermentans NRRL YB-2248:0.23367,(Ogataea trehalophila NRRL Y-6781:0.0634693,Ogataea methanolica JCM 10240:0.0635138)1:0.143303)1:0.0364214)1:0.0681563,((Ogataea trehaloabstinens NRRL Y-27595:0.240241,Ogataea populi-albae NRRL Y-48632:0.19583)1:0.109824,((Ogataea zsoltii NRRL Y-27601:0.106801,(Ogataea glucozyma NRRL YB-2185:0.125497,(Ogataea henricii NRRL YB-2194:0.0652918,Ogataea pini NRRL Y-11528:0.0832313)1:0.0564285)1:0.0349258)1:0.117879,((Ogataea minuta NRRL Y-411:0.0815234,Ogataea nonfermentans NRRL YB-2203:0.0649159)1:0.0858242,(Ogataea kodamae NRRL Y-17234:0.276318,(Ogataea philodendri NRRL Y-7210:0.16107,(Ogataea polymorpha NCYC 495 leu1.1:0.0237039,Ogataea parapolymorpha:0.0123489)1:0.137202)1:0.0329933)1:0.0274717)1:0.178127)1:0.0484727)1:0.0552351)1:0.0549412,((Ambrosiozyma maleeae NRRL Y-63635:0.258273,((Ambrosiozyma kashinagacola JCM 15019:0.196206,(Ambrosiozyma pseudovanderkliftii NRRL Y-63632:0.103065,Ambrosiozyma vanderkliftii NRRL Y-63633:0.0839667)1:0.0913495)1:0.0409106,(Ambrosiozyma monospora JCM 7599:0.234639,(Ambrosiozyma oregonensis NRRL Y-6106:0.0826625,(Ambrosiozyma philentoma NRRL Y-7523:0.0357081,Ambrosiozyma ambrosiae NRRL Y-7524:0.0705379)1:0.026201)1:0.130669)1:0.03731)1:0.0668046)1:0.117317,((Brettanomyces custersianus NRRL Y-6653:0.31306,(Brettanomyces anomalus:0.0854333,Brettanomyces bruxellensis CBS 2499:0.0907076)1:0.224162)1:0.282927,((Kregervanrija fluxuum NRRL YB-4273:0.0355143,Kregervanrija delftensis NRRL Y-7119:0.0311594)1:0.225534,((Martiniozyma abiesophila NRRL Y-11514:0.320478,((Saturnispora mendoncae NRRL Y-11515:0.161201,Saturnispora silvae NRRL Y-6725:0.331441)1:0.105865,(Saturnispora saitoi NRRL Y-6671:0.0911533,(Saturnispora zaruensis NRRL Y-7008:0.0580631,(Saturnispora dispora NRRL Y-1447:0.031157,(Saturnispora serradocipensis NRRL Y-48717:0.0165811,Saturnispora hagleri NRRL Y-27828:0.0129394)1:0.0233711)1:0.0308985)1:0.0776961)1:0.125167)1:0.181222)1:0.143022,((Candida sorboxylosa JCM 1536:0.372151,Pichia terricola NRRL YB-4310:0.256406)1:0.0700447,(Pichia membranifaciens KS47-1:0.213499,((Pichia heedii NRRL Y-10967:0.130518,Pichia nakasei NRRL Y-7686:0.123153)1:0.187264,((Pichia norvegensis NRRL Y-7687:0.307748,Pichia kudriavzevii:0.274245)1:0.047663,(Pichia occidentalis NRRL Y-7552:0.190823,Pichia exigua NRRL Y-10920:0.216283)1:0.0273444)1:0.0202107)1:0.0282289)1:0.0444849)1:0.151672)1:0.0978808)1:0.150478)1:0.0843851)1:0.0446598)1:0.111139)1:0.0367086)1:0.137306)1:0.0425494)1:0.0600483)1:0.0499527)1:0.103505,(Babjeviella inositovora NRRL Y-12698:0.594547,((Cephaloascus albidus:0.18956,Cephaloascus fragrans:0.210025)1:0.210658,((Candida schatavii NRRL Y-17078:0.29428,(Candida fragi NRRL Y-17910:0.0714581,Kurtzmaniella cleridarum NRRL Y-48386:0.0735961)1:0.306068)1:0.108229,(((Candida athensensis NRRL Y-27644:0.132895,(Meyerozyma guilliermondii ATCC 6260:0.0289919,(Candida carpophila JCM 9396:0.0151985,Meyerozyma caribbica:0.0185042)1:0.0206601)1:0.0934175)1:0.329014,(Candida ascalaphidarum NRRL Y-27908:0.414658,((Candida gorgasii NRRL Y-27707:0.221357,Candida tammaniensis NRRL Y-8257:0.186332)1:0.101116,(Yamadazyma scolyti NRRL Y-5512:0.270025,(Yamadazyma tenuis:0.191175,(Yamadazyma nakazawae NRRL Y-7903:0.0860963,Yamadazyma philogaea NRRL Y-7813:0.119211)1:0.13583)1:0.0698957)1:0.0621763)1:0.179539)1:0.0478873)1:0.0252656,(((Millerozyma acaciae JCM 10732:0.318905,(Debaryomyces maramus NRRL Y-2171:0.126252,(Debaryomyces nepalensis NRRL Y-7108:0.107212,(Debaryomyces hansenii:0.0420625,(Debaryomyces prosopidis NRRL Y-27369:0.0489959,(Debaryomyces subglobosus NRRL Y-6666:0.0269918,Debaryomyces fabryi NRRL Y-17914:0.0215588)1:0.00458487)1:0.0217112)1:0.0474478)1:0.0562497)1:0.0791464)1:0.0717927,((Priceomyces carsonii NRRL YB-4275:0.202197,(Priceomyces medius NRRL Y-7122:0.126528,(Priceomyces haplophilus JCM 1635:0.134127,Priceomyces castillae NRRL Y-7501:0.0664317)1:0.052666)1:0.106057)1:0.170928,(((Wickerhamia fluorescens JCM 1821:0.309207,(Teunomyces gatunensis NRRL Y-48064:0.139302,(Teunomyces cretensis NRRL Y-27777:0.0373482,Teunomyces kruisii NRRL Y-17087:0.0354532)1:0.0674172)1:0.152253)1:0.0395823,((Suhomyces pyralidae NRRL Y-27085:0.207777,(Suhomyces tanzawaensis NRRL Y-17324:0.114461,(Suhomyces canberraensis NRRL YB-2417:0.126395,Suhomyces emberorum NRRL Y-27606:0.157814)1:0.0330656)1:0.074523)1:0.0880461,(Aciculoconidium aculeatum NRRL YB-4298:0.278681,(Kodamaea laetipori NRRL Y-27713:0.166081,(Kodamaea ohmeri NRRL Y-1932:0.120016,Candida restingae NRRL Y-27358:0.122045)1:0.175941)1:0.0561324)1:0.13211)1:0.0306706)1:0.0320665,((Scheffersomyces stipitis:0.162145,Scheffersomyces lignosus JCM 9837:0.141854)1:0.103183,(((Spathaspora hagerdaliae:0.0274865,Spathaspora gorwiae UFMG-CM-Y312:0.0270552)1:0.185213,(Spathaspora passalidarum NRRL Y-27907:0.0756431,(Spathaspora arborariae:0.0863436,Spathaspora girioi:0.103206)1:0.0276678)1:0.158335)1:0.0543878,((Candida corydali NRRL Y-27910:0.321211,(Lodderomyces elongisporus:0.271322,(Candida parapsilosis:0.0662414,Candida orthopsilosis:0.0591273)1:0.173632)1:0.103296)1:0.0375885,((Candida dubliniensis CD36:0.0370067,Candida albicans WO-1:0.0309348)1:0.126495,(Candida tropicalis ATCC 200956 MY1012:0.0573369,Candida sojae GF41:0.0691758)1:0.118022)1:0.0968903)1:0.0675366)1:0.119154)1:0.0332128)1:0.0611332)1:0.0307845)1:0.0194503,(((Hyphopichia homilentoma JCM 1507:0.231014,Hyphopichia burtonii NRRL Y-1933:0.195628)1:0.0539724,(Danielozyma ontarioensis NRRL YB-1246:0.28361,(Candida gotoi NRRL Y-27225:0.0656244,(Hyphopichia heimii NRRL Y-7502:0.0226493,Candida rhagii NRRL Y-2594:0.0238606)1:0.068766)1:0.157449)1:0.0369338)1:0.0713511,((Candida heveicola NRRL Y-48716:0.134205,_Candida_ auris:0.137532)1:0.207365,(Candida oregonensis NRRL Y-5850:0.222047,(((Candida intermedia JCM 1607:0.130323,Candida blattae NRRL Y-27698:0.127583)1:0.100258,(Clavispora lusitaniae:0.147865,Clavispora fructus NRRL Y-17072:0.15848)1:0.137841)1:0.0302907,((Candida wancherniae NRRL Y-48709:0.246543,(Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993:0.172847,Candida golubevii NRRL Y-48707:0.168165)1:0.0922754)1:0.0530619,(Candida hawaiiana:0.166731,(Metschnikowia kipukae UWOPS 00-669.2:0.116121,((Metschnikowia hibisci UWOPS 95-797.2:0.0472722,(Metschnikowia shivogae UWOPS 04-310.1:0.0168883,Metschnikowia aberdeeniae SUB 05-213.1:0.0146631)1:0.0315668)1:0.0981931,((Metschnikowia proteae:0.00747509,Metschnikowia drakensbergensis:0.00548386)1:0.0718813,((Metschnikowia arizonensis UWOPS 99-103.4:0.0768031,(Metschnikowia similis UWOPS 03-133.4:0.0158634,(Metschnikowia dekortorum:0.00848135,Metschnikowia bowlesiae:0.00946469)1:0.00906119)1:0.100881)1:0.019975,((Metschnikowia kamakouana UWOPS 04-112.5:0.0238126,(Metschnikowia hawaiiensis UWOPS 87-2203.2:0.0113058,(Metschnikowia hamakuensis UWOPS 04-199.1:0.0101785,Metschnikowia mauinuiana UWOPS 04-190.1:0.00865049)1:0.00277958)1:0.0283861)1:0.0126143,((Candida ipomoeae UWOPS 10-104.1:0.0100707,Metschnikowia borealis SUB 99-207.1:0.0167867)1:0.00210267,((Metschnikowia lochheadii UWOPS 99-661.1:0.00996666,(Metschnikowia matae var. matae UFMG-CM-Y391A:0.00424069,Metschnikowia matae var. maris UFMG-CM-Y397T:0.00348643)1:0.00958686)1:0.00918633,(Metschnikowia continentalis UWOPS 95-402.1:0.00666829,(Metschnikowia santaceciliae UWOPS 01-517a1:0.00622675,Metschnikowia cerradonensis:0.00638518)1:0.00224705)1:0.00605543)1:0.00228128)1:0.0140057)1:0.0477555)1:0.0216892)1:0.0216014)1:0.0448311)1:0.0790685)1:0.148907)1:0.104645)1:0.0330591)1:0.0346064)1:0.191308)1:0.0501198)1:0.0235663)1:0.0497414)1:0.249136)1:0.0750128)1:0.0732652)1:0.049717)1:0.219066)1:0.165959)1:0.126267)1:0.0731174)1:0.168976)1:0.15046)1:0.545914);\",\n \"r2t\" : \"(Schizosaccharomyces pombe:0.126204,(Saitoella complicata:0.0885746,((Arthrobotrys oligospora:0.0619566,(((Botrytis cinerea:0.0159599,Sclerotinia sclerotiorum:0.0144928)100:0.0963903,(Fusarium graminearum:0.0510591,(Neurospora crassa:0.0739745,Thermothelomyces heterothallicus:0.0683393)100:0.0362615)100:0.0584987)100:0.0447412,(((Zymoseptoria tritici:0.0711361,Passalora fulva:0.0715012)100:0.0977923,(Curvularia lunata:0.0396482,Parastagonospora nodorum:0.0402995)100:0.0997238)100:0.0445184,(Xylona heveae:0.0827906,(Coccidioides immitis:0.084686,(Aspergillus glaucus:0.0668904,(Aspergillus nidulans:0.0401227,Aspergillus oryzae:0.0447877)100:0.0146822)100:0.0489525)100:0.0540695)100:0.0225032)100:0.0234296)97:0.0417394)100:0.0878736,((Lipomyces japonicus NRRL Y-17848:0.083055,((Lipomyces suomiensis NRRL Y-17356:0.063608,Lipomyces oligophaga NRRL Y-17247:0.0762265)100:0.0217226,(Lipomyces doorenjongii NRRL Y-27504:0.0786482,(Lipomyces lipofer NRRL Y-11555:0.0650201,(Lipomyces kononenkoae NRRL Y-11553:0.0459803,((Lipomyces starkeyi NRRL Y-11557:0.00681505,Lipomyces starkeyi:0.00528117)100:0.0119879,(Lipomyces mesembrius NRRL Y-27506:0.0232923,Lipomyces arxii NRRL Y-17921:0.0349869)100:0.00929258)100:0.0178152)100:0.0224125)100:0.0117255)100:0.0112742)100:0.0161427)100:0.0443967,(((Trigonopsis variabilis NRRL Y-1579:0.0918385,Trigonopsis vinaria NRRL Y-5715:0.0778916)100:0.0634075,(Botryozyma nematodophila NRRL Y-17705:0.126145,(Tortispora starmeri NRRL Y-63665:0.0822969,(Tortispora caseinolytica NRRL Y-17796:0.0293182,Tortispora ganteri NRRL Y-17035:0.0348557)100:0.0511304)100:0.0413347)100:0.0281241)100:0.0197302,(((Middelhovenomyces tepae NRRL Y-17670:0.111319,((Galactomyces candidus Phaff 72-186:0.0669059,(Dipodascus geniculatus NRRL Y-17628:0.0585418,Dipodascus albidus NRRL Y-12859:0.0802071)100:0.032647)100:0.0352005,((Saprochaete clavata:0.0573717,(Magnusiomyces capitatus:0.0225681,Magnusiomyces capitatus:0.00343673)100:0.0266914)100:0.0426538,(Magnusiomyces tetrasperma NRRL Y-7288:0.0909393,(Magnusiomyces ingens:0.00426038,Magnusiomyces ingens:0.00454468)100:0.0594328)100:0.0145665)100:0.037234)100:0.0271195)100:0.0160277,(((Candida incommunis NRRL Y-17085:0.0714356,Deakozyma indianensis NRRL YB-1937:0.0665043)100:0.0862172,((Wickerhamiella infanticola DS02:0.112297,Wickerhamiella cacticola NRRL Y-27362:0.121855)100:0.0593741,(Candida hispaniensis NRRL Y-5580:0.0908408,((Yarrowia sp. JCM 30694:0.00421429,Yarrowia bubula NRRL Y-63668:0.0066085)100:0.0141797,((Yarrowia deformans JCM 1694:0.00474947,Yarrowia divulgata NRRL Y-63741:0.00788674)100:0.00896605,(Yarrowia lipolytica:0.00855678,(Yarrowia sp. JCM 30696:0.00457866,(Yarrowia sp. JCM 30695:0.00109815,Yarrowia keelungensis JCM 14894:0.000746909)100:0.00339822)100:0.00776074)100:0.0030877)100:0.00797457)100:0.0687327)100:0.084079)99:0.0269638)99:0.0226604,(((Groenewaldozyma salmanticensis NRRL Y-17090:0.11507,(Zygoascus ofunaensis NRRL Y-10998:0.0905002,(Zygoascus hellenicus NRRL Y-7136:0.0177705,Zygoascus meyerae NRRL Y-17319:0.033743)100:0.0524429)100:0.0360027)100:0.0174588,((Spencermartinsiella europaea NRRL Y-48265:0.0911582,Diddensiella caesifluorescens NRRL Y-48781:0.0884185)100:0.0161105,(Sugiyamaella valdiviana:0.0815797,(Sugiyamaella americana NRRL YB-2067:0.0856077,Sugiyamaella lignohabitans CBS 10342:0.0351246)100:0.0195916)100:0.0261745)100:0.0136807)100:0.0169933,(Blastobotrys muscicola NRRL Y-7993:0.11487,((Blastobotrys mokoenaii NRRL Y-27120:0.0956722,(Blastobotrys attinorum Y-27639:0.0521706,(Blastobotrys nivea NRRL Y-17581:0.0858854,Blastobotrys proliferans NRRL Y-17577:0.0888617)100:0.0122257)100:0.014012)100:0.0192743,(Blastobotrys serpentis NRRL Y-48249:0.10963,((Blastobotrys americana NRRL Y-6844:0.0632957,Blastobotrys peoriensis NRRL YB-2290:0.056484)100:0.0312416,(Blastobotrys adeninivorans:0.0201089,Blastobotrys raffinosifermentans:0.016445)100:0.0638897)100:0.0369131)100:0.0165191)100:0.0160658)100:0.0187613)100:0.0218206)99:0.0218424)99:0.0323467,((Nadsonia fulvescens NRRL Y-12810:0.0431276,Nadsonia fulvescens var. elongata DSM 6958:0.0290928)100:0.100074,((Alloascoidea hylecoeti JCM 7604:0.142779,(Sporopachydermia lactativora NRRL Y-11591:0.0716173,Sporopachydermia quercuum JCM 9486:0.060207)100:0.0533148)77:0.0184655,(((Ascoidea asiatica JCM 7603:0.0909876,Ascoidea rubescens:0.0923764)100:0.0555868,(Saccharomycopsis fermentans NRRL Y-17710:0.0670507,(Saccharomycopsis malanga JCM 7620:0.0537866,Saccharomycopsis capsularis NRRL Y-17639:0.0726377)100:0.0293327)100:0.0505221)100:0.0351169,((((Candida ponderosae NRRL YB-2307:0.116821,(Starmera quercuum NRRL YB-4281:0.0867524,(Candida stellimalicola NRRL Y-17912:0.0710683,Starmera amethionina NRRL Y-10978:0.0660149)100:0.038032)100:0.024918)91:0.0146313,((Wickerhamomyces anomalus:0.0497049,Wickerhamomyces ciferrii NRRL Y-1031:0.0512548)100:0.0264792,(((Wickerhamomyces alni NRRL Y-11625:0.0754478,(Wickerhamiella azyma NRRL Y-17067:0.0310146,Wickerhamomyces canadensis NRRL Y-1888:0.0326725)100:0.0453877)100:0.0288606,(Wickerhamomyces bovis NRRL YB-4184:0.083978,((Barnettozyma hawaiiensis NRRL Y-27270:0.0506112,(Barnettozyma populi NRRL Y-12728:0.0521714,Barnettozyma californica NRRL Y-17395:0.0407995)100:0.00921085)100:0.0371517,((Barnettozyma pratensis NRRL Y-12696:0.0622423,Barnettozyma salicaria NRRL Y-6780:0.069559)100:0.0123131,(Candida montana NRRL Y-17326:0.0751889,((Candida orba NRRL Y-27336:0.0339559,Phaffomyces thermotolerans NRRL Y-11709:0.0339438)100:0.0210789,(Phaffomyces antillensis NRRL Y-12881:0.0392326,Phaffomyces opuntiae NRRL Y-11707:0.0320823)100:0.0209823)100:0.0419267)100:0.0220956)100:0.0105821)100:0.0313017)100:0.0153705)100:0.0180182,((Wickerhamomyces hampshirensis NRRL YB-4128:0.0842166,Candida freyschussii:0.0702627)100:0.0145882,(((Cyberlindnera xylosilytica NRRL YB-2097:0.0615196,Cyberlindnera fabianii JCM 3601:0.0530417)100:0.011541,(Cyberlindnera petersonii NRRL YB-3808:0.0626946,(Candida mycetangii NRRL Y-6843:0.0582128,Cyberlindnera americana NRRL Y-2156:0.0598929)100:0.0114685)100:0.0159979)100:0.0264469,((Cyberlindnera maclurae NRRL Y-5377:0.0526604,Cyberlindnera misumaiensis NRRL Y-17389:0.0442506)100:0.0440499,(Cyberlindnera jadinii NRRL Y-1542:0.0725383,(Candida vartiovaarae:0.0625927,(Cyberlindnera mrakii NRRL Y-1364:0.0367754,(Cyberlindnera saturnus NRRL Y-17396:0.0287399,Cyberlindnera suaveolens NRRL Y-17391:0.0232996)100:0.0160669)100:0.0292767)100:0.0102841)100:0.0092162)100:0.0263359)100:0.0154825)100:0.0219838)100:0.0164339)95:0.0119649)100:0.0468189,((Saccharomycodes ludwigii UTAD17:0.114355,((Hanseniaspora vineae:0.0341913,Hanseniaspora osmophila NRRL Y-1613:0.0381317)100:0.0685352,((Hanseniaspora singularis:0.0663886,Hanseniaspora valbyensis NRRL Y-1626:0.0517474)100:0.0155812,(Kloeckera hatyaiensis:0.0523116,(Hanseniaspora pseudoguilliermondii:0.0562921,(Hanseniaspora uvarum:0.0346921,Hanseniaspora clermontiae NRRL Y-27515:0.0475276)100:0.0145255)100:0.0211695)100:0.0279143)100:0.114557)100:0.0384264)100:0.0348094,(((((Eremothecium cymbalariae DBVPG 7215:0.0482528,Eremothecium gossypii ATCC 10895:0.0869488)100:0.0173328,(Eremothecium sinecaudum ATCC 58844:0.0547745,Eremothecium coryli CBS 5749:0.0443996)55:0.00927931)100:0.0479904,(Kluyveromyces aestuarii NRRL YB-4510:0.0661155,(Kluyveromyces marxianus CBS6556:0.0381194,(Kluyveromyces dobzhanskii NRRL Y-1974:0.0402393,Kluyveromyces lactis NRRL Y-1140:0.0242856)100:0.0197354)100:0.0335599)100:0.051824)100:0.0229944,(Lachancea kluyveri:0.0625351,((Lachancea cidri:0.185105,Lachancea mirantina:0.119783)99:0.0288772,((Lachancea dasiensis:0.1214,(Lachancea waltii:0.00819208,(Lachancea meyersii CBS 8951:0.183661,Lachancea nothofagi:0.158248)92:0.0175256)35:0.000265047)81:0.0265036,(Lachancea lanzarotensis CBS 12615:0.0483696,(Lachancea quebecensis:0.0129892,(Lachancea thermotolerans CBS 6340:0.00142213,Lachancea thermotolerans:0.00168073)100:0.00945148)100:0.0453357)95:0.0251145)61:0.0240587)100:0.0154712)100:0.0115994)100:0.0190621,((((Zygosaccharomyces kombuchaensis NRRL YB-4811:0.046758,(Zygosaccharomyces bisporus NRRL Y-12626:0.0360355,Zygosaccharomyces bailii:0.0398601)100:0.0121151)100:0.0202831,(Zygosaccharomyces sapae:0.0121896,(Zygosaccharomyces rouxii v1:0.00340107,Zygosaccharomyces rouxii:0.00320738)100:0.00810975)100:0.0509075)100:0.0714314,((Torulaspora microellipsoides:0.0475723,(Zygotorulaspora florentina NRRL Y-1560:0.0483917,Zygotorulaspora mrakii NRRL Y-12654:0.055265)100:0.0283279)99:0.00902968,(Torulaspora maleeae CBS 10694:0.052034,(Torulaspora delbrueckii:0.0233883,(Torulaspora franciscae NRRL Y-17532:0.0262398,Torulaspora pretoriensis NRRL Y-17251:0.0244877)100:0.0186046)100:0.018761)100:0.0240214)100:0.0161415)100:0.0295256,(((Tetrapisispora blattae:0.0525052,Yueomyces sinensis NRRL Y-17406:0.099179)100:0.0421829,(Vanderwaltozyma polyspora:0.0729678,(Tetrapisispora iriomotensis NRRL Y-27309:0.0560405,(Tetrapisispora phaffii CBS 4417:0.0338951,(Tetrapisispora fleetii NRRL Y-27350:0.0348304,Tetrapisispora namnaoensis NRRL Y-27982:0.0327815)100:0.0179)100:0.0198241)100:0.048753)100:0.0314575)100:0.0246669,((Naumovozyma castellii:0.0505552,(((Kazachstania africana CBS 2517:0.0646844,(Kazachstania viticola NRRL Y-27206:0.0759366,Kazachstania martiniae NRRL Y-409:0.0521419)100:0.0130001)97:0.0077118,((Kazachstania rosinii NRRL Y-17919:0.0596281,Kazachstania spencerorum NRRL Y-17920:0.0768462)100:0.0126981,(Kazachstania turicensis NRRL Y-48834:0.0431203,Kazachstania kunashirensis NRRL Y-27209:0.0559373)100:0.0293573)100:0.0207873)97:0.0114597,(Kazachstania intestinalis NRRL Y-48847:0.0833165,(Kazachstania bromeliacearum NRRL Y-48836:0.079683,((Kazachstania taianensis NRRL Y-48846:0.078128,Kazachstania naganishii CBS 8797:0.0939904)100:0.0218932,((Kazachstania yakushimaensis NRRL Y-48837:0.0243461,Kazachstania transvaalensis NRRL Y-17245:0.0430026)100:0.0585229,(Kazachstania siamensis NRRL Y-48842:0.0457349,(Kazachstania unispora NRRL Y-1556:0.0380544,(Kazachstania solicola NRRL Y-27207:0.0275766,Kazachstania aerobia NRRL Y-27976:0.0259698)100:0.024771)100:0.0190303)100:0.0346524)100:0.0155365)100:0.010997)100:0.0149155)97:0.0121949)100:0.0163685)100:0.0115806,(((Nakaseomyces bacillisporus CBS 7720:0.0602697,_Candida_ castellii CBS 4332:0.0552284)100:0.0196278,(_Candida_ glabrata CBS 138:0.0400934,(_Candida_ bracarensis CBS 10154:0.0249734,(_Candida_ nivariensis CBS 9983:0.0220311,Nakaseomyces delphensis CBS 2170:0.029392)100:0.00532474)100:0.016744)100:0.0575278)100:0.0195602,(Lachancea fermentati:0.180518,(((Saccharomyces bayanus NBRC1948:0.00599558,(Saccharomyces eubayanus:0.0311309,(Saccharomyces pastorianus CBS 1503:0.0081642,Saccharomyces pastorianus CBS 1513:0.0041158)100:0.00354016)100:0.00386148)100:0.0060333,(Candida norvegica:0.0339226,(Saccharomyces bayanus CBS 7001:0.0182511,(Saccharomyces bayanus 623-6C CBS 7001:0.00237523,Saccharomyces uvarum:0.00363307)100:0.00208439)100:0.00457913)100:0.00367531)100:0.0171416,(Saccharomyces arboricola:0.0257175,(Saccharomyces kudriavzevii:0.0231824,((Saccharomyces jurei:0.00897546,(Saccharomyces mikatae IFO 1815:0.00132382,Saccharomyces mikatae:0.00400149)100:0.00689138)100:0.0136218,(Saccharomyces cerevisiae x Saccharomyces kudriavzevii x Saccharomyces uvarum CBS 2834:0.00682362,(Saccharomyces cerevisiae x Saccharomyces kudriavzevii:0.00517659,((Saccharomyces cerevisiae x Saccharomyces eubayanus Hybrid H1:0.00776694,(Saccharomyces pastorianus VTT A-63015:0.00325668,Saccharomyces pastorianus Weihenstephan 34/70:0.0116326)100:0.00241464)100:0.0019361,((Saccharomyces cerevisiae Vin13:0.00163674,((Saccharomyces cerevisiae x Saccharomyces mikatae:0.00797371,(Saccharomyces cerevisiae FostersO:0.00307742,(Saccharomyces paradoxus:0.0129436,Saccharomyces cerevisiae x Saccharomyces paradoxus DBVPG1373xZ1:0.00341844)100:0.00492533)99:0.00226386)88:0.000728143,(Ogataea polymorpha RB11:0.000245516,((Candida tropicalis CBS 94:0.000399229,Ogataea polymorpha CBS 4732:0.000452355)100:0.000174036,((Zygosaccharomyces rouxii CBS 732:0.000356679,Lachancea thermotolerans CBS 6340:0.000527001)87:0.000158257,(Millerozyma farinosa CBS 7064:0.000250795,(Kluyveromyces marxianus CBS 712:0.000321026,(Saccharomyces cerevisiae S288C:0.000481844,Saccharomyces cerevisiae AWRI796:0.00294417)100:0.000752871)98:0.000129624)100:0.000812457)79:6.41111e-05)78:0.000115355)100:0.00113339)88:0.000426612)88:0.000745475,(Candida gropengiesseri:0.00398597,(Candida batistae:0.00191938,((Wickerhamiella domercqiae:0.0731683,Wickerhamiella versatilis JCM 5958:0.0917899)100:0.0201985,((Candida stellata:0.0447414,(Candida davenportii:0.0883913,Starmerella bacillaris NP2:0.0706162)100:0.0389893)100:0.0266105,((Starmerella bombicola JCM 9596:0.085771,(Candida bombi:0.0676886,Candida apicola NRRL Y-50540:0.0505998)100:0.0206182)100:0.0320175,(Candida geochares:0.0607001,(Candida sorbosivorans:0.0414339,(Wickerhamiella galacta:0.00713286,Candida magnoliae:0.0215597)100:0.016667)100:0.00941328)100:0.0286677)100:0.0198253)100:0.0223772)100:0.106092)100:0.00330585)100:0.00340044)88:0.000881557)94:0.0026942)94:0.00647231)94:0.00702113)100:0.00371471)100:0.00556456)100:0.00752715)100:0.0530619)100:0.0292997)100:0.015258)100:0.0168147)100:0.0146565)100:0.0355872)100:0.027864)100:0.102054)100:0.0402833,(((Pachysolen tannophilus NRRL Y-2460:0.0808212,((Peterozyma xylosa NRRL Y-12939:0.0413235,Peterozyma toletana NRRL YB-4247:0.0363934)100:0.079557,(Nakazawaea peltata JCM 9829:0.0790579,(Nakazawaea holstii NRRL Y-2155:0.076221,Nakazawaea wickerhamii NRRL Y-2563:0.0830923)100:0.0236035)100:0.0313818)100:0.0167062)100:0.0309597,(((Citeromyces siamensis NRRL Y-27975:0.0596415,(Citeromyces hawaiiensis NRRL Y-11581:0.0404304,Citeromyces matritensis NRRL Y-2407:0.0405154)100:0.0300409)100:0.0722959,((Komagataella populi NRRL YB-455:0.00452192,Komagataella pseudopastoris NRRL Y-27603:0.00450592)100:0.0174026,(Komagataella pastoris:0.00889631,(Komagataella phaffii:0.000148318,(Komagataella phaffii GS115:4.69073e-05,Komagataella phaffii:0.000106001)100:7.7985e-05)100:0.00811704)100:0.0144677)100:0.140854)100:0.0285972,((Kuraishia ogatae NRRL Y-48474:0.0914258,(Kuraishia molischiana NRRL Y-27899:0.0581477,Kuraishia capsulata:0.0467181)100:0.0478643)100:0.0195164,(Candida boidinii JCM 9604:0.110969,(((Candida succiphila JCM 9445:0.0886966,Ogataea naganishii NRRL Y-7654:0.0959386)100:0.0167412,(Ogataea methylivora NRRL Y-17250:0.0855903,Ogataea ramenticola NRRL YB-1985:0.0987928)100:0.0178331)100:0.0227408,((((Ogataea pilisensis NRRL Y-27598:0.066275,Ogataea nitratoaversa NRRL Y-48449:0.0642773)100:0.028961,(Candida arabinofermentans NRRL YB-2248:0.0849656,(Ogataea trehalophila NRRL Y-6781:0.0487782,Ogataea methanolica JCM 10240:0.0493589)100:0.0293327)100:0.0140467)100:0.0279201,(Ogataea trehaloabstinens NRRL Y-27595:0.099808,((Ogataea zsoltii NRRL Y-27601:0.0533496,(Ogataea glucozyma NRRL YB-2185:0.0502725,(Ogataea henricii NRRL YB-2194:0.0474431,(Ogataea pini NRRL Y-11528:0.000173811,Ogataea populi-albae NRRL Y-48632:0.000238677)100:0.0473245)100:0.0117949)100:0.010016)100:0.0313845,((Ogataea nonfermentans NRRL YB-2203:0.0463412,Ogataea minuta NRRL Y-411:0.0528823)100:0.0269107,(Ogataea philodendri NRRL Y-7210:0.0685447,(Ogataea kodamae NRRL Y-17234:0.0684285,(Ogataea parapolymorpha:0.019301,(Ogataea angusta:0.00598477,Ogataea polymorpha NCYC 495 leu1.1:0.000116775)100:0.00806111)100:0.0330794)100:0.0111215)100:0.0117704)100:0.0279163)100:0.0145388)100:0.0167219)100:0.0177219,((Ambrosiozyma maleeae NRRL Y-63635:0.0833518,((Ambrosiozyma kashinagacola JCM 15019:0.0693266,(Ambrosiozyma pseudovanderkliftii NRRL Y-63632:0.0577148,Ambrosiozyma vanderkliftii NRRL Y-63633:0.0566447)100:0.0243184)100:0.0165422,(Ambrosiozyma monospora JCM 7599:0.0768011,(Ambrosiozyma oregonensis NRRL Y-6106:0.0577061,(Ambrosiozyma philentoma NRRL Y-7523:0.0407241,Ambrosiozyma ambrosiae NRRL Y-7524:0.058601)95:0.0150731)100:0.0404117)100:0.0150307)100:0.0199196)100:0.0274069,((Candida sp. JCM 15000:0.0941246,(Brettanomyces custersianus NRRL Y-6653:0.086231,(Brettanomyces anomalus:0.0318015,(Brettanomyces bruxellensis:0.000593528,(Brettanomyces bruxellensis CBS 2499:0.00109505,Brettanomyces bruxellensis:0.00264587)100:0.000384652)100:0.0247517)100:0.0615694)100:0.0521429)100:0.0778521,((Kregervanrija fluxuum NRRL YB-4273:0.0374345,Kregervanrija delftensis NRRL Y-7119:0.0405164)100:0.0638635,((Martiniozyma abiesophila NRRL Y-11514:0.109633,((Saturnispora silvae NRRL Y-6725:0.0831621,Saturnispora mendoncae NRRL Y-11515:0.067902)100:0.0265947,(Saturnispora saitoi NRRL Y-6671:0.0588065,(Saturnispora zaruensis NRRL Y-7008:0.0528894,(Saturnispora dispora NRRL Y-1447:0.0370446,(Saturnispora hagleri NRRL Y-27828:0.0255079,Saturnispora serradocipensis NRRL Y-48717:0.0340521)100:0.0169599)100:0.0125902)100:0.0247621)100:0.0299834)100:0.0367605)100:0.0308369,((Pichia terricola NRRL YB-4310:0.074898,Candida sorboxylosa JCM 1536:0.0758895)100:0.0245451,((Candida californica:0.0648764,(Pichia membranifaciens NRRL Y-2026:0.0243445,Pichia membranifaciens KS47-1:0.0209896)100:0.0311224)59:0.0177483,((Pichia norvegensis NRRL Y-7687:0.0887783,Pichia kudriavzevii:0.082125)100:0.0177134,((Pichia nakasei NRRL Y-7686:0.067107,Pichia heedii NRRL Y-10967:0.0588032)100:0.0369725,(Pichia occidentalis NRRL Y-7552:0.0675481,Pichia exigua NRRL Y-10920:0.0755201)59:0.0151337)59:0.0107938)59:0.0109712)100:0.0124365)100:0.0326334)100:0.0231644)100:0.0331026)100:0.0335554)100:0.0176088)100:0.0289504)99:0.0137276)100:0.034821)100:0.0193198)100:0.0237829)100:0.0278153,(Babjeviella inositovora NRRL Y-12698:0.0830192,((Cephaloascus fragrans:0.0569461,Cephaloascus albidus:0.0718853)100:0.0346833,((Candida schatavii NRRL Y-17078:0.091576,(Candida fragi NRRL Y-17910:0.0453009,Kurtzmaniella cleridarum NRRL Y-48386:0.0568199)100:0.0648921)100:0.0253452,((((Candida ascalaphidarum NRRL Y-27908:0.098612,Diutina catenulata:0.148142)95:0.0200365,(Candida athensensis NRRL Y-27644:0.0392514,((Meyerozyma guilliermondii:0.000908622,Meyerozyma guilliermondii ATCC 6260:0.00309795)100:0.0101255,(Meyerozyma caribbica:0.009389,Candida carpophila JCM 9396:0.00717367)100:0.00816186)100:0.0269725)100:0.0762289)92:0.0167428,((Candida tammaniensis NRRL Y-8257:0.0674796,Candida gorgasii NRRL Y-27707:0.0694565)100:0.0285249,(Yamadazyma scolyti NRRL Y-5512:0.0774375,(Candida aaseri SH-14:0.0654444,((Yamadazyma laniorum yHMH7:0.0417828,Yamadazyma tenuis:0.0402424)100:0.0282539,(Yamadazyma nakazawae NRRL Y-7903:0.0408872,Yamadazyma philogaea NRRL Y-7813:0.0504395)100:0.0356588)100:0.0194215)100:0.0124815)100:0.0205036)100:0.0585866)77:0.0121471,(((Priceomyces carsonii NRRL YB-4275:0.0773801,(Priceomyces medius NRRL Y-7122:0.0599315,(Priceomyces castillae NRRL Y-7501:0.0479101,Priceomyces haplophilus JCM 1635:0.0517119)100:0.0177603)100:0.0293383)100:0.0429337,(Millerozyma acaciae JCM 10732:0.0740945,(Debaryomyces maramus NRRL Y-2171:0.0742901,((Debaryomyces hansenii:0.0094309,Debaryomyces tyrocola:0.00741868)100:0.0123071,(Debaryomyces fabryi NRRL Y-17914:0.0115779,(Debaryomyces hansenii J6:0.00478424,(Debaryomyces subglobosus NRRL Y-6666:0.00307223,(Debaryomyces prosopidis NRRL Y-27369:0.0266364,Debaryomyces nepalensis NRRL Y-7108:0.0590941)100:0.0214071)100:0.0162527)100:0.0127128)100:0.00837282)100:0.0302908)100:0.0281444)100:0.0204554)98:0.014532,((((Wickerhamia fluorescens JCM 1821:0.0804346,(Teunomyces gatunensis NRRL Y-48064:0.0543253,(Teunomyces kruisii NRRL Y-17087:0.0250798,Teunomyces cretensis NRRL Y-27777:0.0295176)100:0.0240266)100:0.0384231)100:0.0131621,((Aciculoconidium aculeatum NRRL YB-4298:0.0837536,(Kodamaea laetipori NRRL Y-27713:0.0636316,(Kodamaea ohmeri NRRL Y-1932:0.0490485,Candida restingae NRRL Y-27358:0.0479262)100:0.0351338)100:0.0169767)100:0.0342227,(Suhomyces pyralidae NRRL Y-27085:0.0720593,((Suhomyces canberraensis NRRL YB-2417:0.0513793,Suhomyces emberorum NRRL Y-27606:0.0573297)100:0.013494,(Suhomyces tanzawaensis:0.000172874,Suhomyces tanzawaensis NRRL Y-17324:0.000124577)100:0.0429432)100:0.0187886)100:0.0236942)100:0.0114544)100:0.012213,(((Scheffersomyces lignosus JCM 9837:0.0282656,Scheffersomyces shehatae ATY839:0.0176242)100:0.034077,(Scheffersomyces stipitis:0.000518897,Scheffersomyces stipitis NRRL Y-7124:0.00119922)100:0.0475992)100:0.0326218,(((Spathaspora gorwiae UFMG-CM-Y312:0.0172059,Spathaspora sp.:0.017776)100:0.0470127,(Spathaspora arborariae:0.0407776,(Spathaspora sp.:0.0365321,(Spathaspora passalidarum NRRL Y-27907:0.000681504,(Spathaspora passalidarum:0.00100702,Spathaspora passalidarum:0.000326132)100:0.00040554)100:0.0255792)100:0.0120683)100:0.040913)100:0.0204885,((Candida corydali NRRL Y-27910:0.0859408,(Lodderomyces elongisporus:0.0706966,(Candida metapsilosis:0.0259618,(Candida orthopsilosis:0.0216995,Candida parapsilosis:0.0233949)100:0.00841778)100:0.0372902)100:0.0291739)100:0.0147675,((Candida sojae GF41:0.0310027,Candida tropicalis ATCC 200956 MY1012:0.0110004)100:0.0223129,(Candida dubliniensis CD36:0.0709642,(Naumovozyma dairenensis:0.00144647,(Candida albicans WO-1:0.00123288,Candida albicans:0.00103971)100:0.000641177)100:0.0102161)100:0.0290815)100:0.0324332)100:0.0267713)100:0.0394725)95:0.0128346)95:0.02227,(((Hyphopichia homilentoma JCM 1507:0.0587536,Hyphopichia burtonii NRRL Y-1933:0.0713047)100:0.016959,(Danielozyma ontarioensis NRRL YB-1246:0.0873366,(Candida gotoi NRRL Y-27225:0.0455032,(Candida rhagii NRRL Y-2594:0.0222124,Hyphopichia heimii NRRL Y-7502:0.0224423)100:0.0230844)100:0.0392466)100:0.0145792)100:0.0209346,((_Candida_ auris:0.0455892,(Candida heveicola NRRL Y-48716:0.0410977,Candida pseudohaemulonis B12108:0.0394728)100:0.0226688)100:0.0469312,((Candida oregonensis NRRL Y-5850:0.0865896,((Candida intermedia JCM 1607:0.042487,Candida blattae NRRL Y-27698:0.0530799)100:0.0238467,(Clavispora fructus NRRL Y-17072:0.0576833,Clavispora lusitaniae:0.0491396)100:0.0272481)100:0.0102521)96:0.0107527,(Metschnikowia bicuspidata:0.104942,((Candida wancherniae NRRL Y-48709:0.0784867,(Candida golubevii NRRL Y-48707:0.0554815,(Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993:0.0413189,(Metschnikowia fructicola:0.0157945,Metschnikowia fructicola:0.0148367)100:0.0299732)100:0.0118293)100:0.0209009)100:0.0131789,((Metschnikowia drosophilae UWOPS83-1135.3:0.021045,Candida torresii CBS 5152:0.0230134)100:0.0543554,((Metschnikowia orientalis UWOPS99-745.6:0.0433538,Candida hawaiiana:0.0375214)100:0.0152737,(Metschnikowia sp. M2Y3 EBD-CdV M2Y3:0.0331658,((Metschnikowia kipukae UWOPS 00-669.2:0.0297972,(Metschnikowia hibisci UWOPS 95-797.2:0.0265758,(Metschnikowia aberdeeniae SUB 05-213.1:0.0117725,Metschnikowia shivogae UWOPS 04-310.1:0.0110661)100:0.0119074)100:0.015541)58:0.00570717,((Metschnikowia proteae:0.0057267,Metschnikowia drakensbergensis:0.0055943)100:0.0241508,(((Metschnikowia arizonensis UWOPS 99-103.4:0.0370555,Metschnikowia colocasiae UWOPS 03-202.1:0.0171738)93:0.00452229,(Metschnikowia sp. 03-147.1 UWOPS 03-147.1:0.0208946,(Metschnikowia similis UWOPS 03-133.4:0.0111303,(Metschnikowia dekortorum:0.00697665,Metschnikowia bowlesiae:0.00921332)100:0.00571605)100:0.023746)93:0.00417948)100:0.00628612,((Metschnikowia hawaiiensis UWOPS 87-2203.2:0.0301812,Metschnikowia sp. 04-218.3 UWOPS 04-218.3:0.0150044)100:0.0108385,((Metschnikowia lochheadii UWOPS 99-661.1:0.00971309,(Metschnikowia matae var. matae UFMG-CM-Y391A:0.00687815,Metschnikowia matae var. maris UFMG-CM-Y397T:0.00685245)100:0.00661365)100:0.00543424,((Metschnikowia sp. 04-226.1 UWOPS 04-226.1:0.00877917,(Metschnikowia continentalis UWOPS 95-402.1:0.00829922,(Metschnikowia santaceciliae UWOPS 01-517a1:0.00694966,Metschnikowia cerradonensis:0.00643801)100:0.0022256)100:0.00393078)100:0.00346672,((Metschnikowia cubensis MUCL 45751:0.0116299,Metschnikowia sp. 01-655c1 UWOPS 01-655c1:0.010726)100:0.00475537,(Candida ipomoeae UWOPS 10-104.1:0.0120555,(Metschnikowia borealis SUB 99-207.1:0.00434673,Metschnikowia sp. 13-106.1 UWOPS 13-106.1:0.0046889)100:0.0079509)100:0.00239546)100:0.00300571)100:0.00344102)100:0.00898957)100:0.0120361)100:0.00782286)100:0.00621084)58:0.0061066)100:0.0152811)100:0.0320067)56:0.00960016)100:0.0151264)100:0.014359)99:0.0138301)100:0.0445971)100:0.014915)94:0.00905625)92:0.0102603)100:0.0178837)100:0.0562855)100:0.0243772)100:0.0198609)100:0.0259199)57:0.0176658)100:0.0501942)100:0.045588)99:0.0241612)100:0.0456527)100:0.0313927)100:0.0580377)100:0.0449143)1:0.126204);\",\n \"LRF1\" : \"((((((((((((((((((TP53_AmelENSAMEP00000017825:0.0263[&&NHX:D=N:T=9646],TP53_MpfuENSMPUP00000008945:0.066538[&&NHX:D=N:T=9669])speciation:0.032561[&&NHX:D=N:B=99:T=379584:DD=],TP53_CfamENSCAFP00000024579:0.086484[&&NHX:D=N:T=9615])speciation:0.034068[&&NHX:D=N:B=81:T=379584:DD=],TP53_FcatENSFCAP00000008925:0.06619[&&NHX:D=N:T=9685])speciation:0.025911[&&NHX:D=N:B=31:T=33554:DD=],TP53_EcabENSECAP00000006210:0.04971[&&NHX:D=N:T=9796])speciation:0.01224[&&NHX:D=N:T=314145:B=17:DD=],(((TP53_BtauENSBTAP00000001420:0.043108[&&NHX:D=N:T=9913],TP53_OariENSOARP00000016707:0.049064[&&NHX:D=N:T=9940])speciation:0.055294[&&NHX:D=N:B=98:T=9895:DD=],TP53_TtruENSTTRP00000009721:0.022529[&&NHX:D=N:T=9739])speciation:0.022515[&&NHX:D=N:T=91561:B=39:DD=],TP53_SscrENSSSCP00000019016:0.065797[&&NHX:D=N:T=9823])speciation:0.020972[&&NHX:D=N:T=91561:B=35:DD=])speciation:0.006996[&&NHX:D=N:B=9:T=314145:DD=],TP53_SaraENSSARP00000005616:0.149927[&&NHX:D=N:T=42254])speciation:0.013221[&&NHX:D=N:T=314145:B=7:DD=],TP53_PvamENSPVAP00000015400:0.117578[&&NHX:D=N:T=132908])speciation:0.0[&&NHX:D=N:B=1:T=314145:DD=],((ENSMLUG00000006411_MlucENSMLUP00000005861:0.003702[&&NHX:D=N:T=59463],ENSMLUG00000025140_MlucENSMLUP00000016733:0.12569[&&NHX:D=N:T=59463])duplication:0.131525[&&NHX:D=Y:T=59463:B=100],TP53_EeurENSEEUP00000013295:0.183463[&&NHX:D=N:T=9365])speciation:0.042602[&&NHX:D=N:T=314145:B=33:DD=])duplication:0.018327[&&NHX:DD=Y:T=314145:B=0:D=],(((((Trp53_MmusENSMUSP00000104298:0.002681[&&NHX:D=N:T=10090],Trp53_MsspMGP_SPRETEiJ_P0028933:0.017851[&&NHX:D=N:T=10096])speciation:0.064969[&&NHX:D=N:B=100:T=862507:DD=],Tp53_RnorENSRNOP00000074031:0.079068[&&NHX:D=N:T=10116])speciation:0.12872[&&NHX:D=N:T=39107:B=100:DD=],LOC100910954_RnorENSRNOP00000064177:0.056502[&&NHX:D=N:T=10116])duplication:0.0[&&NHX:D=Y:B=5:T=39107],TP53_OpriENSOPRP00000005906:0.185911[&&NHX:D=N:T=9978])speciation:0.0[&&NHX:D=N:T=314147:B=0:DD=],((((TP53_MmurENSMICP00000039812:0.054544[&&NHX:D=N:T=30608],TP53_OgarENSOGAP00000015106:0.095719[&&NHX:D=N:T=30611])duplication:0.012762[&&NHX:D=N:B=52:T=376911:DD=],((((((TP53_HsapENSP00000269305:0.0[&&NHX:D=N:T=9606],TP53_GgorENSGGOP00000009561:0.002907[&&NHX:D=N:T=9595])speciation:0.001345[&&NHX:D=N:B=61:T=207598:DD=],TP53_PtroENSPTRP00000014836:0.000592[&&NHX:D=N:T=9598])speciation:0.00877[&&NHX:D=N:B=61:T=207598:DD=],TP53_PabeENSPPYP00000008923:0.009552[&&NHX:D=N:T=9601])speciation:4.8e-05[&&NHX:D=N:T=9604:B=100:DD=],TP53_NleuENSNLEP00000011861:0.032229[&&NHX:D=N:T=61853])speciation:0.004444[&&NHX:D=N:T=314295:B=97:DD=],((TP53_PanuENSPANP00000019643:0.007102[&&NHX:D=N:T=9555],TP53_CsabENSCSAP00000007551:0.010543[&&NHX:D=N:T=60711])speciation:0.000953[&&NHX:D=N:B=100:T=9528:DD=],TP53_MmulENSMMUP00000035274:0.043449[&&NHX:D=N:T=9544])speciation:0.019535[&&NHX:D=N:T=9528:B=55:DD=])speciation:0.013822[&&NHX:D=N:T=9526:B=52:DD=],TP53_CjacENSCJAP00000027663:0.047099[&&NHX:D=N:T=9483])speciation:0.027286[&&NHX:D=N:B=57:T=314293:DD=])speciation:0.013265[&&NHX:D=N:T=9443:B=4:DD=],TP53_TbelENSTBEP00000010189:0.222843[&&NHX:D=N:T=37347])speciation:0.008121[&&NHX:D=N:B=0:T=314146:DD=],((TP53_ItriENSSTOP00000019678:0.08339[&&NHX:D=N:T=43179],Tp53_CporENSCPOP00000012841:0.120892[&&NHX:D=N:T=10141])speciation:0.018406[&&NHX:D=N:T=9989:B=42:DD=],(ENSOCUG00000001138_OcunENSOCUP00000000989:0.013142[&&NHX:D=N:T=9986],ENSOCUG00000022109_OcunENSOCUP00000025959:0.090881[&&NHX:D=N:T=9986])duplication:0.069194[&&NHX:D=Y:T=9986:B=97])speciation:0.015339[&&NHX:D=N:T=314147:B=15:DD=])speciation:0.019539[&&NHX:D=N:B=0:T=314146:DD=])duplication:0.026935[&&NHX:DD=Y:T=314146:B=0:D=])speciation:0.017095[&&NHX:D=N:T=1437010:B=0:DD=],(((((((ENSLAFG00000028692_LafrENSLAFP00000023554:0.00886[&&NHX:D=N:T=9785],ENSLAFG00000030880_LafrENSLAFP00000027441:0.052436[&&NHX:D=N:T=9785])duplication:0.006909[&&NHX:D=Y:B=0:T=9785],ENSLAFG00000030555_LafrENSLAFP00000027808:0.044446[&&NHX:D=N:T=9785])duplication:0.003043[&&NHX:D=Y:T=9785:B=0],(ENSLAFG00000028299_LafrENSLAFP00000024998:0.011792[&&NHX:D=N:T=9785],ENSLAFG00000032042_LafrENSLAFP00000023389:0.017693[&&NHX:D=N:T=9785])duplication:0.015904[&&NHX:D=Y:T=9785:B=74])duplication:0.0[&&NHX:D=Y:B=0:T=9785],(((ENSLAFG00000027365_LafrENSLAFP00000025852:0.011873[&&NHX:D=N:T=9785],ENSLAFG00000026238_LafrENSLAFP00000027253:0.026457[&&NHX:D=N:T=9785])duplication:0.019571[&&NHX:D=Y:T=9785:B=81],ENSLAFG00000027669_LafrENSLAFP00000028793:0.027495[&&NHX:D=N:T=9785])duplication:0.016599[&&NHX:D=Y:T=9785:B=70],ENSLAFG00000027820_LafrENSLAFP00000028173:0.058133[&&NHX:D=N:T=9785])duplication:0.031788[&&NHX:D=Y:T=9785:B=87])duplication:0.038135[&&NHX:D=Y:T=9785:B=10],(ENSLAFG00000027348_LafrENSLAFP00000027515:0.028441[&&NHX:D=N:T=9785],ENSLAFG00000027474_LafrENSLAFP00000018379:0.03464[&&NHX:D=N:T=9785])duplication:0.131904[&&NHX:D=Y:B=100:T=9785],ENSLAFG00000007483_LafrENSLAFP00000006292:0.058399[&&NHX:D=N:T=9785])duplication:0.0075[&&NHX:D=Y:T=9785:B=23],TP53_PcapENSPCAP00000011892:0.114307[&&NHX:D=N:T=9813])speciation:0.010282[&&NHX:D=N:T=311790:B=18:DD=],(ENSETEG00000008987_EtelENSETEP00000007296:0.0[&&NHX:D=N:T=9371],ENSETEG00000009984_EtelENSETEP00000008111:0.105253[&&NHX:D=N:T=9371])duplication:0.154739[&&NHX:D=Y:B=100:T=9371])speciation:0.044399[&&NHX:D=N:T=311790:B=35:DD=])speciation:0.041158[&&NHX:D=N:B=0:T=9347:DD=],TP53_DnovENSDNOP00000004075:0.078395[&&NHX:D=N:T=9361])speciation:0.080059[&&NHX:D=N:B=0:T=9347:DD=],((TP53_SharENSSHAP00000018268:0.0496[&&NHX:D=N:T=9305],ENSMODG00000007271_MdomENSMODP00000009014:0.172546[&&NHX:D=N:T=13616])speciation:0.024952[&&NHX:D=N:T=9263:B=83:DD=],ENSMEUG00000013135_MeugENSMEUP00000011978:0.069167[&&NHX:D=N:T=9315])speciation:0.225429[&&NHX:D=N:B=83:T=9263:DD=])speciation:0.228895[&&NHX:D=N:B=81:T=32525:DD=],tp53_XtroENSXETP00000053759:0.483686[&&NHX:D=N:T=8364])speciation:0.095084[&&NHX:D=N:B=55:T=32523:DD=],(TP53_PsinENSPSIP00000014905:0.228951[&&NHX:D=N:T=13735],ENSOANG00000011981_OanaENSOANP00000018980:0.553865[&&NHX:D=N:T=9258])speciation:0.126185[&&NHX:D=N:B=48:T=32524:DD=])duplication:0.03737[&&NHX:DD=Y:B=17:T=32523:D=],TP53_LchaENSLACP00000015915:0.317935[&&NHX:D=N:T=7897])speciation:0.062274[&&NHX:D=N:B=13:T=8287:DD=],(((tp53_DrerENSDARP00000051548:0.365455[&&NHX:D=N:T=7955],tp53_AmexENSAMXP00000021366:0.579505[&&NHX:D=N:T=7994])speciation:0.105036[&&NHX:D=N:B=46:T=186626:DD=],((((((tp53_TrubENSTRUP00000030645:0.158124[&&NHX:D=N:T=31033],tp53_TnigENSTNIP00000013035:0.25403[&&NHX:D=N:T=99883])speciation:0.1396[&&NHX:D=N:T=31031:B=100:DD=],tp53_OlatENSORLP00000008029:0.359414[&&NHX:D=N:T=8090])speciation:0.040022[&&NHX:D=N:T=1489872:B=1:DD=],(tp53_GacuENSGACP00000025614:0.249641[&&NHX:D=N:T=69293],tp53_OnilENSONIP00000023874:0.251831[&&NHX:D=N:T=8128])speciation:0.085834[&&NHX:D=N:T=1489872:B=100:DD=])duplication:0.070104[&&NHX:DD=Y:T=1489872:B=0:D=],(tp53_PforENSPFOP00000007556:0.070709[&&NHX:D=N:T=48698],tp53_XmacENSXMAP00000015753:0.165631[&&NHX:D=N:T=8083])speciation:0.290725[&&NHX:D=N:B=100:T=586240:DD=])duplication:0.058888[&&NHX:DD=Y:B=2:T=1489872:D=],ENSGMOG00000007755_GmorENSGMOP00000008291:0.272843[&&NHX:D=N:T=8049])speciation:0.143728[&&NHX:D=N:T=123368:B=3:DD=],TP531ofmany_AmexENSAMXP00000007265:0.383807[&&NHX:D=N:T=7994])speciation:0.129809[&&NHX:D=N:T=186625:B=41:DD=])duplication:0.079851[&&NHX:D=Y:B=6:T=186625],tp53_LocuENSLOCP00000017063:0.263043[&&NHX:D=N:T=7918])speciation:0.079504[&&NHX:D=N:T=41665:B=5:DD=])speciation:0.205725[&&NHX:D=N:B=10:T=117571:DD=],ENSPMAG00000009535_PmarENSPMAP00000010479:0.363682[&&NHX:D=N:T=7757])speciation:0.005138[&&NHX:D=N:B=0:T=7742:DD=],((((((((((((TP63_MgalENSMGAP00000001036:0.00675[&&NHX:D=N:T=9103],TP63_GgalENSGALP00000032705:0.02786[&&NHX:D=N:T=9031])speciation:0.018196[&&NHX:D=N:B=100:T=9005:DD=],TP63_AplaENSAPLP00000012746:0.025285[&&NHX:D=N:T=8839])speciation:0.020559[&&NHX:D=N:B=100:T=1549675:DD=],(TP63_TgutENSTGUP00000009686:0.018245[&&NHX:D=N:T=59729],TP63_FalbENSFALP00000007718:0.02902[&&NHX:D=N:T=59894])speciation:0.022707[&&NHX:D=N:B=100:T=9126:DD=])speciation:0.046097[&&NHX:D=N:T=8825:B=100:DD=],TP63_PsinENSPSIP00000018044:0.123057[&&NHX:D=N:T=13735])speciation:0.005555[&&NHX:D=N:T=1329799:B=37:DD=],TP63_AcarENSACAP00000000376:0.736631[&&NHX:D=N:T=28377])speciation:0.010123[&&NHX:D=N:B=0:T=32561:DD=],((((((((((Trp63_MmusENSMUSP00000110965:0.000847[&&NHX:D=N:T=10090],Trp63_MsspMGP_SPRETEiJ_P0042982:0.004734[&&NHX:D=N:T=10096])speciation:0.021561[&&NHX:D=N:B=100:T=862507:DD=],Tp63_RnorENSRNOP00000033463:0.030383[&&NHX:D=N:T=10116])speciation:0.048568[&&NHX:D=N:T=39107:B=100:DD=],Trp63_DordENSDORP00000001930:0.044582[&&NHX:D=N:T=10020],TP63_ItriENSSTOP00000012357:0.057295[&&NHX:D=N:T=43179])speciation:0.000474[&&NHX:D=N:T=33553:B=0:DD=],TP63_CporENSCPOP00000013308:0.058396[&&NHX:D=N:T=10141])speciation:0.003336[&&NHX:D=N:B=0:T=9989:DD=],TP63_OpriENSOPRP00000002632:0.076764[&&NHX:D=N:T=9978])speciation:0.001386[&&NHX:D=N:B=0:T=314147:DD=],(TP63_OcunENSOCUP00000014157:0.04305[&&NHX:D=N:T=9986],TP63_OgarENSOGAP00000003415:0.053686[&&NHX:D=N:T=30611])speciation:0.018263[&&NHX:D=N:B=56:T=314146:DD=])duplication:0.0[&&NHX:DD=Y:T=314146:B=0:D=],TP63_TbelENSTBEP00000003655:0.050557[&&NHX:D=N:T=37347])speciation:0.000127[&&NHX:D=N:B=0:T=314146:DD=],(((((((TP63_PvamENSPVAP00000008543:0.02784[&&NHX:D=N:T=132908],TP63_MlucENSMLUP00000014213:0.029592[&&NHX:D=N:T=59463])speciation:0.007063[&&NHX:D=N:B=37:T=9397:DD=],(((TP63_AmelENSAMEP00000000831:0.015923[&&NHX:D=N:T=9646],TP63_CfamENSCAFP00000020585:0.020935[&&NHX:D=N:T=9615])speciation:0.003042[&&NHX:D=N:T=379584:B=80:DD=],TP63_MpfuENSMPUP00000003407:0.032827[&&NHX:D=N:T=9669])speciation:0.009414[&&NHX:D=N:B=64:T=379584:DD=],TP63_FcatENSFCAP00000000731:0.02322[&&NHX:D=N:T=9685])speciation:0.017067[&&NHX:D=N:T=33554:B=74:DD=])speciation:0.001436[&&NHX:D=N:T=314145:B=0:DD=],((((TP63_BtauENSBTAP00000020544:0.005072[&&NHX:D=N:T=9913],TP63_OariENSOARP00000021997:0.009983[&&NHX:D=N:T=9940])speciation:0.025469[&&NHX:D=N:T=9895:B=100:DD=],TP63_TtruENSTTRP00000011034:0.022489[&&NHX:D=N:T=9739])speciation:0.005877[&&NHX:D=N:B=58:T=91561:DD=],TP63_SscrENSSSCP00000025960:0.02089[&&NHX:D=N:T=9823])speciation:0.005665[&&NHX:D=N:B=29:T=91561:DD=],TP63_VpacENSVPAP00000011479:0.032735[&&NHX:D=N:T=30538])speciation:0.007589[&&NHX:D=N:B=13:T=91561:DD=])speciation:0.001552[&&NHX:D=N:B=0:T=314145:DD=],(TP63_EcabENSECAP00000016315:0.020605[&&NHX:D=N:T=9796],TP63_EeurENSEEUP00000012623:0.068478[&&NHX:D=N:T=9365])speciation:0.015388[&&NHX:D=N:B=15:T=314145:DD=])speciation:0.00388[&&NHX:D=N:T=314145:B=0:DD=],((((((((TP63_HsapENSP00000264731:0.001872[&&NHX:D=N:T=9606],TP63_GgorENSGGOP00000020551:0.002754[&&NHX:D=N:T=9595])speciation:0.000918[&&NHX:D=N:T=207598:B=46:DD=],TP63_PtroENSPTRP00000027067:0.001869[&&NHX:D=N:T=9598])speciation:0.002874[&&NHX:D=N:T=207598:B=46:DD=],TP63_PabeENSPPYP00000016106:0.004542[&&NHX:D=N:T=9601])speciation:0.000913[&&NHX:D=N:T=9604:B=70:DD=],TP63_NleuENSNLEP00000008197:0.004734[&&NHX:D=N:T=61853])speciation:0.000949[&&NHX:D=N:T=314295:B=66:DD=],((TP63_MmulENSMMUP00000038274:0.003714[&&NHX:D=N:T=9544],TP63_CsabENSCSAP00000005295:0.026509[&&NHX:D=N:T=60711])speciation:0.0[&&NHX:D=N:B=31:T=9528:DD=],TP63_PanuENSPANP00000003169:0.001823[&&NHX:D=N:T=9555])speciation:0.010162[&&NHX:D=N:B=31:T=9528:DD=])speciation:0.010185[&&NHX:D=N:T=9526:B=95:DD=],TP63_CjacENSCJAP00000026376:0.015601[&&NHX:D=N:T=9483])speciation:0.013295[&&NHX:D=N:T=314293:B=100:DD=],TP63_MmurENSMICP00000022696:0.021271[&&NHX:D=N:T=30608])speciation:0.0[&&NHX:D=N:B=42:T=9443:DD=],(TP63_TsyrENSTSYP00000003403:0.025783[&&NHX:D=N:T=1868482],TP63_SaraENSSARP00000011553:0.056367[&&NHX:D=N:T=42254])speciation:0.010618[&&NHX:D=N:B=14:T=1437010:DD=])duplication:0.006497[&&NHX:DD=Y:B=1:T=1437010:D=])duplication:0.0[&&NHX:DD=Y:B=0:T=1437010:D=],(TP63_DnovENSDNOP00000012853:0.025753[&&NHX:D=N:T=9361],TP63_ChofENSCHOP00000009300:0.040693[&&NHX:D=N:T=9358])speciation:0.020456[&&NHX:D=N:B=76:T=9348:DD=])speciation:0.001941[&&NHX:D=N:T=9347:B=0:DD=],((TP63_LafrENSLAFP00000020806:0.016207[&&NHX:D=N:T=9785],TP63_PcapENSPCAP00000004708:0.030306[&&NHX:D=N:T=9813])speciation:0.00755[&&NHX:D=N:T=311790:B=91:DD=],TP63_EtelENSETEP00000001864:0.071017[&&NHX:D=N:T=9371])speciation:0.015236[&&NHX:D=N:T=311790:B=8:DD=])speciation:0.007477[&&NHX:D=N:B=0:T=9347:DD=])duplication:0.052158[&&NHX:DD=Y:B=0:T=9347:D=],((TP63_MdomENSMODP00000018831:0.034607[&&NHX:D=N:T=13616],TP63_MeugENSMEUP00000014131:0.045944[&&NHX:D=N:T=9315])speciation:0.011561[&&NHX:D=N:T=9263:B=100:DD=],TP63_SharENSSHAP00000008666:0.303146[&&NHX:D=N:T=9305])speciation:0.054652[&&NHX:D=N:B=12:T=9263:DD=])speciation:0.017647[&&NHX:D=N:B=2:T=32525:DD=],TP63_OanaENSOANP00000021753:0.079276[&&NHX:D=N:T=9258])speciation:0.043447[&&NHX:D=N:T=40674:B=2:DD=])speciation:0.034349[&&NHX:D=N:T=32524:B=0:DD=],tp63_XtroENSXETP00000055541:0.267401[&&NHX:D=N:T=8364])speciation:0.032348[&&NHX:D=N:B=0:T=32523:DD=],(ENSACAG00000002961_AcarENSACAP00000002870:0.0[&&NHX:D=N:T=28377],ENSACAG00000022533_AcarENSACAP00000021196:1.16541[&&NHX:D=N:T=28377])duplication:0.116614[&&NHX:D=Y:T=28377:B=0])duplication:0.005373[&&NHX:D=Y:T=32523:B=0],TP63_LchaENSLACP00000022643:0.17787[&&NHX:D=N:T=7897])speciation:0.031924[&&NHX:D=N:T=8287:B=0:DD=],(((((((tp63_PforENSPFOP00000001124:0.014737[&&NHX:D=N:T=48698],tp63_XmacENSXMAP00000016461:0.044393[&&NHX:D=N:T=8083])speciation:0.052269[&&NHX:D=N:B=99:T=586240:DD=],tp63_OlatENSORLP00000019616:0.105223[&&NHX:D=N:T=8090])speciation:0.020917[&&NHX:D=N:B=24:T=1489913:DD=],tp63_OnilENSONIP00000024326:0.065197[&&NHX:D=N:T=8128])speciation:0.01928[&&NHX:D=N:T=1489908:B=16:DD=],(tp63_TnigENSTNIP00000016776:0.042973[&&NHX:D=N:T=99883],tp63_TrubENSTRUP00000008025:0.048688[&&NHX:D=N:T=31033])speciation:0.043668[&&NHX:D=N:B=100:T=31031:DD=])speciation:0.020832[&&NHX:D=N:B=77:T=1489872:DD=],(ENSGACG00000013629_GacuENSGACP00000018012:0.069577[&&NHX:D=N:T=69293],ENSGMOG00000000413_GmorENSGMOP00000000401:0.110102[&&NHX:D=N:T=8049])speciation:0.067443[&&NHX:D=N:B=97:T=123368:DD=])duplication:0.040724[&&NHX:DD=Y:B=65:T=123368:D=],(tp63_AmexENSAMXP00000004961:0.092792[&&NHX:D=N:T=7994],tp63_DrerENSDARP00000108362:0.121291[&&NHX:D=N:T=7955])speciation:0.046115[&&NHX:D=N:T=186626:B=86:DD=])speciation:0.034365[&&NHX:D=N:T=186625:B=37:DD=],tp63_LocuENSLOCP00000006202:0.102939[&&NHX:D=N:T=7918])speciation:0.049371[&&NHX:D=N:B=52:T=41665:DD=])speciation:0.110844[&&NHX:D=N:B=0:T=117571:DD=],(((((((((((TP73_LafrENSLAFP00000005892:0.029578[&&NHX:D=N:T=9785],TP73_PcapENSPCAP00000000662:0.051492[&&NHX:D=N:T=9813])speciation:0.003183[&&NHX:D=N:T=311790:B=90:DD=],TP73_EtelENSETEP00000007165:0.095673[&&NHX:D=N:T=9371])speciation:0.033805[&&NHX:D=N:T=311790:B=0:DD=],TP73_DnovENSDNOP00000028722:0.457081[&&NHX:D=N:T=9361])speciation:0.006287[&&NHX:D=N:B=0:T=9347:DD=],((((((((TP73_BtauENSBTAP00000007643:0.009498[&&NHX:D=N:T=9913],TP73_OariENSOARP00000017005:0.019572[&&NHX:D=N:T=9940])speciation:0.012531[&&NHX:D=N:T=9895:B=100:DD=],ENSSSCG00000025685_SscrENSSSCP00000022771:0.057187[&&NHX:D=N:T=9823])speciation:0.018712[&&NHX:D=N:T=91561:B=1:DD=],TP73_TtruENSTTRP00000003223:0.039795[&&NHX:D=N:T=9739])speciation:0.015091[&&NHX:D=N:T=91561:B=0:DD=],(((TP73_AmelENSAMEP00000009745:0.040276[&&NHX:D=N:T=9646],TP73_MpfuENSMPUP00000007349:0.069423[&&NHX:D=N:T=9669])speciation:0.011068[&&NHX:D=N:B=5:T=379584:DD=],TP73_CfamENSCAFP00000028819:0.025289[&&NHX:D=N:T=9615])speciation:0.003214[&&NHX:D=N:B=4:T=379584:DD=],TP73_FcatENSFCAP00000010792:0.059719[&&NHX:D=N:T=9685])speciation:0.021832[&&NHX:D=N:B=20:T=33554:DD=])speciation:0.009094[&&NHX:D=N:T=314145:B=0:DD=],TP73_PvamENSPVAP00000008433:0.078992[&&NHX:D=N:T=132908])speciation:0.005352[&&NHX:D=N:T=314145:B=0:DD=],TP73_EeurENSEEUP00000011975:0.098606[&&NHX:D=N:T=9365])speciation:0.0[&&NHX:D=N:B=0:T=314145:DD=],TP73_EcabENSECAP00000001313:0.038035[&&NHX:D=N:T=9796])speciation:0.007356[&&NHX:D=N:T=314145:B=0:DD=],((((((Trp73_MsspMGP_SPRETEiJ_P0068738:0.0082[&&NHX:D=N:T=10096],Trp73_MmusENSMUSP00000101269:0.011834[&&NHX:D=N:T=10090])speciation:0.027464[&&NHX:D=N:B=100:T=862507:DD=],Tp73_RnorENSRNOP00000052265:0.034464[&&NHX:D=N:T=10116])speciation:0.085459[&&NHX:D=N:T=39107:B=100:DD=],TP73_ItriENSSTOP00000022492:0.061184[&&NHX:D=N:T=43179])speciation:0.008334[&&NHX:D=N:B=2:T=33553:DD=],Trp73_DordENSDORP00000013966:0.076743[&&NHX:D=N:T=10020])speciation:0.0[&&NHX:D=N:T=33553:B=0:DD=],TP73_CporENSCPOP00000009800:0.075508[&&NHX:D=N:T=10141])speciation:0.004958[&&NHX:D=N:T=9989:B=0:DD=],((TP73_MmurENSMICP00000031305:0.033995[&&NHX:D=N:T=30608],TP73_OgarENSOGAP00000005402:0.043894[&&NHX:D=N:T=30611])speciation:0.017054[&&NHX:D=N:T=376911:B=93:DD=],((((((TP73_GgorENSGGOP00000015180:0.00182[&&NHX:D=N:T=9595],TP73_HsapENSP00000367545:0.005775[&&NHX:D=N:T=9606])speciation:0.0[&&NHX:D=N:T=207598:B=92:DD=],TP73_PtroENSPTRP00000000118:0.05274[&&NHX:D=N:T=9598])speciation:0.005412[&&NHX:D=N:B=81:T=207598:DD=],TP73_PabeENSPPYP00000002277:0.013149[&&NHX:D=N:T=9601])speciation:0.000495[&&NHX:D=N:B=30:T=9604:DD=],TP73_NleuENSNLEP00000009887:0.326917[&&NHX:D=N:T=61853])speciation:0.010918[&&NHX:D=N:T=314295:B=0:DD=],((TP73_PanuENSPANP00000007545:0.004788[&&NHX:D=N:T=9555],TP73_CsabENSCSAP00000017283:0.012519[&&NHX:D=N:T=60711])speciation:0.000519[&&NHX:D=N:T=9528:B=86:DD=],TP73_MmulENSMMUP00000040655:0.025402[&&NHX:D=N:T=9544])duplication:0.013713[&&NHX:D=N:B=75:T=9528:DD=])speciation:0.010332[&&NHX:D=N:T=9526:B=0:DD=],TP73_CjacENSCJAP00000005070:0.291972[&&NHX:D=N:T=9483])speciation:0.022859[&&NHX:D=N:B=0:T=314293:DD=])speciation:0.014731[&&NHX:D=N:B=0:T=9443:DD=])speciation:0.020217[&&NHX:D=N:T=314146:B=0:DD=])speciation:0.01086[&&NHX:D=N:T=1437010:B=0:DD=])speciation:0.048685[&&NHX:D=N:T=9347:B=0:DD=],ENSSSCG00000003361_SscrENSSSCP00000003644:0.097446[&&NHX:D=N:T=9823])duplication:0.016508[&&NHX:D=Y:T=9347:B=0],((TP73_MeugENSMEUP00000000705:0.023362[&&NHX:D=N:T=9315],TP73_MdomENSMODP00000008216:0.259151[&&NHX:D=N:T=13616])speciation:0.035881[&&NHX:D=N:B=57:T=9263:DD=],TP73_SharENSSHAP00000006513:0.042193[&&NHX:D=N:T=9305])speciation:0.069704[&&NHX:D=N:T=9263:B=36:DD=])speciation:0.023293[&&NHX:D=N:T=32525:B=2:DD=],TP73_OanaENSOANP00000019815:0.30572[&&NHX:D=N:T=9258])speciation:0.017992[&&NHX:D=N:B=0:T=40674:DD=],(((((TP73_GgalENSGALP00000001485:0.002093[&&NHX:D=N:T=9031],TP73_MgalENSMGAP00000001059:0.036491[&&NHX:D=N:T=9103])speciation:0.047733[&&NHX:D=N:T=9005:B=100:DD=],TP73_AplaENSAPLP00000003415:0.02254[&&NHX:D=N:T=8839])speciation:0.021618[&&NHX:D=N:T=1549675:B=97:DD=],(TP73_TgutENSTGUP00000002829:0.010561[&&NHX:D=N:T=59729],TP73_FalbENSFALP00000010031:0.030208[&&NHX:D=N:T=59894])speciation:0.023763[&&NHX:D=N:T=9126:B=100:DD=])speciation:0.016346[&&NHX:D=N:B=97:T=8825:DD=],TP73_PsinENSPSIP00000004448:0.109544[&&NHX:D=N:T=13735])speciation:0.026517[&&NHX:D=N:T=1329799:B=84:DD=],TP73_AcarENSACAP00000001746:0.128451[&&NHX:D=N:T=28377])speciation:0.019965[&&NHX:D=N:B=67:T=32561:DD=])speciation:0.036745[&&NHX:D=N:T=32524:B=15:DD=],tp73_XtroENSXETP00000010981:0.182635[&&NHX:D=N:T=8364])speciation:0.011019[&&NHX:D=N:B=1:T=32523:DD=],TP73_LchaENSLACP00000021702:0.142378[&&NHX:D=N:T=7897])speciation:0.024057[&&NHX:D=N:B=0:T=8287:DD=],((((((tp73_TnigENSTNIP00000014938:0.027328[&&NHX:D=N:T=99883],tp73_TrubENSTRUP00000038165:0.032469[&&NHX:D=N:T=31033])speciation:0.059199[&&NHX:D=N:T=31031:B=100:DD=],tp73_GacuENSGACP00000008676:0.048591[&&NHX:D=N:T=69293])speciation:0.007086[&&NHX:D=N:T=1489922:B=29:DD=],(((tp73_PforENSPFOP00000010896:0.013197[&&NHX:D=N:T=48698],tp73_XmacENSXMAP00000017403:0.030558[&&NHX:D=N:T=8083])speciation:0.063838[&&NHX:D=N:B=100:T=586240:DD=],tp73_OlatENSORLP00000005521:0.062083[&&NHX:D=N:T=8090])speciation:0.017304[&&NHX:D=N:B=58:T=1489913:DD=],tp73_OnilENSONIP00000002627:0.053778[&&NHX:D=N:T=8128])speciation:0.014746[&&NHX:D=N:T=1489908:B=29:DD=])speciation:0.072637[&&NHX:D=N:B=14:T=1489872:DD=],tp73_GmorENSGMOP00000016675:0.181445[&&NHX:D=N:T=8049])speciation:0.038065[&&NHX:D=N:T=123368:B=98:DD=],(tp73_AmexENSAMXP00000014358:0.086906[&&NHX:D=N:T=7994],tp73_DrerENSDARP00000109674:0.134572[&&NHX:D=N:T=7955])speciation:0.064476[&&NHX:D=N:T=186626:B=100:DD=])speciation:0.04364[&&NHX:D=N:T=186625:B=43:DD=],tp73_LocuENSLOCP00000006343:0.115822[&&NHX:D=N:T=7918])speciation:0.046704[&&NHX:D=N:T=41665:B=14:DD=])speciation:0.167736[&&NHX:D=N:T=117571:B=27:DD=])duplication:0.067299[&&NHX:D=Y:B=0:T=117571],tp63_PmarENSPMAP00000007639:0.797694[&&NHX:D=N:T=7757])speciation:0.076045[&&NHX:D=N:T=7742:B=0:DD=],(('p53/p73-b CintENSCINP00000004447':0.450754[&&NHX:D=N:T=7719],ENSCSAVG00000009788_CsavENSCSAVP00000016659:0.47517[&&NHX:D=N:T=51511])speciation:0.378426[&&NHX:D=N:B=100:T=7718:DD=],(ENSCING00000001960_CintENSCINP00000003956:0.141945[&&NHX:D=N:T=7719],ENSCSAVG00000009964_CsavENSCSAVP00000016940:0.26284[&&NHX:D=N:T=51511])speciation:0.525939[&&NHX:D=N:T=7718:B=100:DD=])duplication:0.603292[&&NHX:D=Y:B=100:T=7718])duplication:0.0[&&NHX:D=N:T=7711:B=0:DD=];\",\n \"LRF2\" : \"((((((((((((((((((TP53_AmelENSAMEP00000017825:0.0263[&&NHX:D=N:T=9646],TP53_MpfuENSMPUP00000008945:0.066538[&&NHX:D=N:T=9669])speciation:0.032561[&&NHX:D=N:B=99:T=379584:DD=],TP53_CfamENSCAFP00000024579:0.086484[&&NHX:D=N:T=9615])speciation:0.034068[&&NHX:D=N:B=81:T=379584:DD=],TP53_FcatENSFCAP00000008925:0.06619[&&NHX:D=N:T=9685])speciation:0.025911[&&NHX:D=N:B=31:T=33554:DD=],TP53_EcabENSECAP00000006210:0.04971[&&NHX:D=N:T=9796])speciation:0.01224[&&NHX:D=N:T=314145:B=17:DD=],(((TP53_BtauENSBTAP00000001420:0.043108[&&NHX:D=N:T=9913],TP53_OariENSOARP00000016707:0.049064[&&NHX:D=N:T=9940])speciation:0.055294[&&NHX:D=N:B=98:T=9895:DD=],TP53_TtruENSTTRP00000009721:0.022529[&&NHX:D=N:T=9739])speciation:0.022515[&&NHX:D=N:T=91561:B=39:DD=],TP53_SscrENSSSCP00000019016:0.065797[&&NHX:D=N:T=9823])speciation:0.020972[&&NHX:D=N:T=91561:B=35:DD=])speciation:0.006996[&&NHX:D=N:B=9:T=314145:DD=],TP53_SaraENSSARP00000005616:0.149927[&&NHX:D=N:T=42254])speciation:0.013221[&&NHX:D=N:T=314145:B=7:DD=],TP53_PvamENSPVAP00000015400:0.117578[&&NHX:D=N:T=132908])speciation:0.0[&&NHX:D=N:B=1:T=314145:DD=],((ENSMLUG00000006411_MlucENSMLUP00000005861:0.003702[&&NHX:D=N:T=59463],ENSMLUG00000025140_MlucENSMLUP00000016733:0.12569[&&NHX:D=N:T=59463])duplication:0.131525[&&NHX:D=Y:T=59463:B=100],TP53_EeurENSEEUP00000013295:0.183463[&&NHX:D=N:T=9365])speciation:0.042602[&&NHX:D=N:T=314145:B=33:DD=])duplication:0.018327[&&NHX:DD=Y:T=314145:B=0:D=],(((((Trp53_MmusENSMUSP00000104298:0.002681[&&NHX:D=N:T=10090],Trp53_MsspMGP_SPRETEiJ_P0028933:0.017851[&&NHX:D=N:T=10096])speciation:0.064969[&&NHX:D=N:B=100:T=862507:DD=],Tp53_RnorENSRNOP00000074031:0.079068[&&NHX:D=N:T=10116])speciation:0.12872[&&NHX:D=N:T=39107:B=100:DD=],LOC100910954_RnorENSRNOP00000064177:0.056502[&&NHX:D=N:T=10116])duplication:0.0[&&NHX:D=Y:B=5:T=39107],TP53_OpriENSOPRP00000005906:0.185911[&&NHX:D=N:T=9978])speciation:0.0[&&NHX:D=N:T=314147:B=0:DD=],((((TP53_MmurENSMICP00000039812:0.054544[&&NHX:D=N:T=30608],TP53_OgarENSOGAP00000015106:0.095719[&&NHX:D=N:T=30611])speciation:0.012762[&&NHX:D=N:B=52:T=376911:DD=],((((((TP53_HsapENSP00000269305:0.0[&&NHX:D=N:T=9606],TP53_GgorENSGGOP00000009561:0.002907[&&NHX:D=N:T=9595])speciation:0.001345[&&NHX:D=N:B=61:T=207598:DD=],TP53_PtroENSPTRP00000014836:0.000592[&&NHX:D=N:T=9598])speciation:0.00877[&&NHX:D=N:B=61:T=207598:DD=],TP53_PabeENSPPYP00000008923:0.009552[&&NHX:D=N:T=9601])speciation:4.8e-05[&&NHX:D=N:T=9604:B=100:DD=],TP53_NleuENSNLEP00000011861:0.032229[&&NHX:D=N:T=61853])speciation:0.004444[&&NHX:D=N:T=314295:B=97:DD=],((TP53_PanuENSPANP00000019643:0.007102[&&NHX:D=N:T=9555],TP53_CsabENSCSAP00000007551:0.010543[&&NHX:D=N:T=60711])speciation:0.000953[&&NHX:D=N:B=100:T=9528:DD=],TP53_MmulENSMMUP00000035274:0.043449[&&NHX:D=N:T=9544])speciation:0.019535[&&NHX:D=N:T=9528:B=55:DD=])speciation:0.013822[&&NHX:D=N:T=9526:B=52:DD=],TP53_CjacENSCJAP00000027663:0.047099[&&NHX:D=N:T=9483])speciation:0.027286[&&NHX:D=N:B=57:T=314293:DD=])speciation:0.013265[&&NHX:D=N:T=9443:B=4:DD=],TP53_TbelENSTBEP00000010189:0.222843[&&NHX:D=N:T=37347])speciation:0.008121[&&NHX:D=N:B=0:T=314146:DD=],((TP53_ItriENSSTOP00000019678:0.08339[&&NHX:D=N:T=43179],Tp53_CporENSCPOP00000012841:0.120892[&&NHX:D=N:T=10141])speciation:0.018406[&&NHX:D=N:T=9989:B=42:DD=],(ENSOCUG00000001138_OcunENSOCUP00000000989:0.013142[&&NHX:D=N:T=9986],ENSOCUG00000022109_OcunENSOCUP00000025959:0.090881[&&NHX:D=N:T=9986])duplication:0.069194[&&NHX:D=Y:T=9986:B=97])speciation:0.015339[&&NHX:D=N:T=314147:B=15:DD=])speciation:0.019539[&&NHX:D=N:B=0:T=314146:DD=])duplication:0.026935[&&NHX:DD=Y:T=314146:B=0:D=])speciation:0.017095[&&NHX:D=N:T=1437010:B=0:DD=],((((((((ENSLAFG00000028692_LafrENSLAFP00000023554:0.00886[&&NHX:D=N:T=9785],ENSLAFG00000030880_LafrENSLAFP00000027441:0.052436[&&NHX:D=N:T=9785])duplication:0.006909[&&NHX:D=Y:B=0:T=9785],ENSLAFG00000030555_LafrENSLAFP00000027808:0.044446[&&NHX:D=N:T=9785])duplication:0.003043[&&NHX:D=Y:T=9785:B=0],(ENSLAFG00000028299_LafrENSLAFP00000024998:0.011792[&&NHX:D=N:T=9785],ENSLAFG00000032042_LafrENSLAFP00000023389:0.017693[&&NHX:D=N:T=9785])duplication:0.015904[&&NHX:D=Y:T=9785:B=74])duplication:0.0[&&NHX:D=Y:B=0:T=9785],(((ENSLAFG00000027365_LafrENSLAFP00000025852:0.011873[&&NHX:D=N:T=9785],ENSLAFG00000026238_LafrENSLAFP00000027253:0.026457[&&NHX:D=N:T=9785])duplication:0.019571[&&NHX:D=Y:T=9785:B=81],ENSLAFG00000027669_LafrENSLAFP00000028793:0.027495[&&NHX:D=N:T=9785])duplication:0.016599[&&NHX:D=Y:T=9785:B=70],ENSLAFG00000027820_LafrENSLAFP00000028173:0.058133[&&NHX:D=N:T=9785])duplication:0.031788[&&NHX:D=Y:T=9785:B=87])duplication:0.038135[&&NHX:D=Y:T=9785:B=10],(ENSLAFG00000027348_LafrENSLAFP00000027515:0.028441[&&NHX:D=N:T=9785],ENSLAFG00000027474_LafrENSLAFP00000018379:0.03464[&&NHX:D=N:T=9785])duplication:0.131904[&&NHX:D=Y:B=100:T=9785])duplication:0.082412[&&NHX:D=Y:T=9785:B=96],ENSLAFG00000007483_LafrENSLAFP00000006292:0.058399[&&NHX:D=N:T=9785])duplication:0.0075[&&NHX:D=Y:T=9785:B=23],TP53_PcapENSPCAP00000011892:0.114307[&&NHX:D=N:T=9813])speciation:0.010282[&&NHX:D=N:T=311790:B=18:DD=],(ENSETEG00000008987_EtelENSETEP00000007296:0.0[&&NHX:D=N:T=9371],ENSETEG00000009984_EtelENSETEP00000008111:0.105253[&&NHX:D=N:T=9371])duplication:0.154739[&&NHX:D=Y:B=100:T=9371])speciation:0.044399[&&NHX:D=N:T=311790:B=35:DD=])speciation:0.041158[&&NHX:D=N:B=0:T=9347:DD=],TP53_DnovENSDNOP00000004075:0.078395[&&NHX:D=N:T=9361])speciation:0.080059[&&NHX:D=N:B=0:T=9347:DD=],((TP53_SharENSSHAP00000018268:0.0496[&&NHX:D=N:T=9305],ENSMODG00000007271_MdomENSMODP00000009014:0.172546[&&NHX:D=N:T=13616])speciation:0.024952[&&NHX:D=N:T=9263:B=83:DD=],ENSMEUG00000013135_MeugENSMEUP00000011978:0.069167[&&NHX:D=N:T=9315])speciation:0.225429[&&NHX:D=N:B=83:T=9263:DD=])speciation:0.228895[&&NHX:D=N:B=81:T=32525:DD=],tp53_XtroENSXETP00000053759:0.483686[&&NHX:D=N:T=8364])speciation:0.095084[&&NHX:D=N:B=55:T=32523:DD=],(TP53_PsinENSPSIP00000014905:0.228951[&&NHX:D=N:T=13735],ENSOANG00000011981_OanaENSOANP00000018980:0.553865[&&NHX:D=N:T=9258])speciation:0.126185[&&NHX:D=N:B=48:T=32524:DD=])duplication:0.03737[&&NHX:DD=Y:B=17:T=32523:D=],TP53_LchaENSLACP00000015915:0.317935[&&NHX:D=N:T=7897])speciation:0.062274[&&NHX:D=N:B=13:T=8287:DD=],(((tp53_DrerENSDARP00000051548:0.365455[&&NHX:D=N:T=7955],tp53_AmexENSAMXP00000021366:0.579505[&&NHX:D=N:T=7994])speciation:0.105036[&&NHX:D=N:B=46:T=186626:DD=],((((((tp53_TrubENSTRUP00000030645:0.158124[&&NHX:D=N:T=31033],tp53_TnigENSTNIP00000013035:0.25403[&&NHX:D=N:T=99883])speciation:0.1396[&&NHX:D=N:T=31031:B=100:DD=],tp53_OlatENSORLP00000008029:0.359414[&&NHX:D=N:T=8090])speciation:0.040022[&&NHX:D=N:T=1489872:B=1:DD=],(tp53_GacuENSGACP00000025614:0.249641[&&NHX:D=N:T=69293],tp53_OnilENSONIP00000023874:0.251831[&&NHX:D=N:T=8128])speciation:0.085834[&&NHX:D=N:T=1489872:B=100:DD=])duplication:0.070104[&&NHX:DD=Y:T=1489872:B=0:D=],(tp53_PforENSPFOP00000007556:0.070709[&&NHX:D=N:T=48698],tp53_XmacENSXMAP00000015753:0.165631[&&NHX:D=N:T=8083])speciation:0.290725[&&NHX:D=N:B=100:T=586240:DD=])duplication:0.058888[&&NHX:DD=Y:B=2:T=1489872:D=],ENSGMOG00000007755_GmorENSGMOP00000008291:0.272843[&&NHX:D=N:T=8049])speciation:0.143728[&&NHX:D=N:T=123368:B=3:DD=],TP531ofmany_AmexENSAMXP00000007265:0.383807[&&NHX:D=N:T=7994])speciation:0.129809[&&NHX:D=N:T=186625:B=41:DD=])duplication:0.079851[&&NHX:D=Y:B=6:T=186625],tp53_LocuENSLOCP00000017063:0.263043[&&NHX:D=N:T=7918])speciation:0.079504[&&NHX:D=N:T=41665:B=5:DD=])speciation:0.205725[&&NHX:D=N:B=10:T=117571:DD=],ENSPMAG00000009535_PmarENSPMAP00000010479:0.363682[&&NHX:D=N:T=7757])speciation:0.005138[&&NHX:D=N:B=0:T=7742:DD=],((((((((((((TP63_MgalENSMGAP00000001036:0.00675[&&NHX:D=N:T=9103],TP63_GgalENSGALP00000032705:0.02786[&&NHX:D=N:T=9031])speciation:0.018196[&&NHX:D=N:B=100:T=9005:DD=],TP63_AplaENSAPLP00000012746:0.025285[&&NHX:D=N:T=8839])speciation:0.020559[&&NHX:D=N:B=100:T=1549675:DD=],(TP63_TgutENSTGUP00000009686:0.018245[&&NHX:D=N:T=59729],TP63_FalbENSFALP00000007718:0.02902[&&NHX:D=N:T=59894])speciation:0.022707[&&NHX:D=N:B=100:T=9126:DD=])speciation:0.046097[&&NHX:D=N:T=8825:B=100:DD=],TP63_PsinENSPSIP00000018044:0.123057[&&NHX:D=N:T=13735])speciation:0.005555[&&NHX:D=N:T=1329799:B=37:DD=],TP63_AcarENSACAP00000000376:0.736631[&&NHX:D=N:T=28377])speciation:0.010123[&&NHX:D=N:B=0:T=32561:DD=],(((((((((((Trp63_MmusENSMUSP00000110965:0.000847[&&NHX:D=N:T=10090],Trp63_MsspMGP_SPRETEiJ_P0042982:0.004734[&&NHX:D=N:T=10096])speciation:0.021561[&&NHX:D=N:B=100:T=862507:DD=],Tp63_RnorENSRNOP00000033463:0.030383[&&NHX:D=N:T=10116])speciation:0.048568[&&NHX:D=N:T=39107:B=100:DD=],Trp63_DordENSDORP00000001930:0.044582[&&NHX:D=N:T=10020])speciation:0.014056[&&NHX:D=N:B=17:T=33553:DD=],TP63_ItriENSSTOP00000012357:0.057295[&&NHX:D=N:T=43179])speciation:0.000474[&&NHX:D=N:T=33553:B=0:DD=],TP63_CporENSCPOP00000013308:0.058396[&&NHX:D=N:T=10141])speciation:0.003336[&&NHX:D=N:B=0:T=9989:DD=],TP63_OpriENSOPRP00000002632:0.076764[&&NHX:D=N:T=9978])speciation:0.001386[&&NHX:D=N:B=0:T=314147:DD=],(TP63_OcunENSOCUP00000014157:0.04305[&&NHX:D=N:T=9986],TP63_OgarENSOGAP00000003415:0.053686[&&NHX:D=N:T=30611])speciation:0.018263[&&NHX:D=N:B=56:T=314146:DD=])duplication:0.0[&&NHX:DD=Y:T=314146:B=0:D=],TP63_TbelENSTBEP00000003655:0.050557[&&NHX:D=N:T=37347])speciation:0.000127[&&NHX:D=N:B=0:T=314146:DD=],(((((((TP63_PvamENSPVAP00000008543:0.02784[&&NHX:D=N:T=132908],TP63_MlucENSMLUP00000014213:0.029592[&&NHX:D=N:T=59463])speciation:0.007063[&&NHX:D=N:B=37:T=9397:DD=],(((TP63_AmelENSAMEP00000000831:0.015923[&&NHX:D=N:T=9646],TP63_CfamENSCAFP00000020585:0.020935[&&NHX:D=N:T=9615])speciation:0.003042[&&NHX:D=N:T=379584:B=80:DD=],TP63_MpfuENSMPUP00000003407:0.032827[&&NHX:D=N:T=9669])speciation:0.009414[&&NHX:D=N:B=64:T=379584:DD=],TP63_FcatENSFCAP00000000731:0.02322[&&NHX:D=N:T=9685])speciation:0.017067[&&NHX:D=N:T=33554:B=74:DD=])speciation:0.001436[&&NHX:D=N:T=314145:B=0:DD=],((((TP63_BtauENSBTAP00000020544:0.005072[&&NHX:D=N:T=9913],TP63_OariENSOARP00000021997:0.009983[&&NHX:D=N:T=9940])speciation:0.025469[&&NHX:D=N:T=9895:B=100:DD=],TP63_TtruENSTTRP00000011034:0.022489[&&NHX:D=N:T=9739])speciation:0.005877[&&NHX:D=N:B=58:T=91561:DD=],TP63_SscrENSSSCP00000025960:0.02089[&&NHX:D=N:T=9823])speciation:0.005665[&&NHX:D=N:B=29:T=91561:DD=],TP63_VpacENSVPAP00000011479:0.032735[&&NHX:D=N:T=30538])speciation:0.007589[&&NHX:D=N:B=13:T=91561:DD=])speciation:0.001552[&&NHX:D=N:B=0:T=314145:DD=],(TP63_EcabENSECAP00000016315:0.020605[&&NHX:D=N:T=9796],TP63_EeurENSEEUP00000012623:0.068478[&&NHX:D=N:T=9365])speciation:0.015388[&&NHX:D=N:B=15:T=314145:DD=])speciation:0.00388[&&NHX:D=N:T=314145:B=0:DD=],((((((((TP63_HsapENSP00000264731:0.001872[&&NHX:D=N:T=9606],TP63_GgorENSGGOP00000020551:0.002754[&&NHX:D=N:T=9595])speciation:0.000918[&&NHX:D=N:T=207598:B=46:DD=],TP63_PtroENSPTRP00000027067:0.001869[&&NHX:D=N:T=9598])speciation:0.002874[&&NHX:D=N:T=207598:B=46:DD=],TP63_PabeENSPPYP00000016106:0.004542[&&NHX:D=N:T=9601])speciation:0.000913[&&NHX:D=N:T=9604:B=70:DD=],TP63_NleuENSNLEP00000008197:0.004734[&&NHX:D=N:T=61853])speciation:0.000949[&&NHX:D=N:T=314295:B=66:DD=],((TP63_MmulENSMMUP00000038274:0.003714[&&NHX:D=N:T=9544],TP63_CsabENSCSAP00000005295:0.026509[&&NHX:D=N:T=60711])speciation:0.0[&&NHX:D=N:B=31:T=9528:DD=],TP63_PanuENSPANP00000003169:0.001823[&&NHX:D=N:T=9555])speciation:0.010162[&&NHX:D=N:B=31:T=9528:DD=])speciation:0.010185[&&NHX:D=N:T=9526:B=95:DD=],TP63_CjacENSCJAP00000026376:0.015601[&&NHX:D=N:T=9483])speciation:0.013295[&&NHX:D=N:T=314293:B=100:DD=],TP63_MmurENSMICP00000022696:0.021271[&&NHX:D=N:T=30608])speciation:0.0[&&NHX:D=N:B=42:T=9443:DD=],(TP63_TsyrENSTSYP00000003403:0.025783[&&NHX:D=N:T=1868482],TP63_SaraENSSARP00000011553:0.056367[&&NHX:D=N:T=42254])speciation:0.010618[&&NHX:D=N:B=14:T=1437010:DD=])duplication:0.006497[&&NHX:DD=Y:B=1:T=1437010:D=])duplication:0.0[&&NHX:DD=Y:B=0:T=1437010:D=],(TP63_DnovENSDNOP00000012853:0.025753[&&NHX:D=N:T=9361],TP63_ChofENSCHOP00000009300:0.040693[&&NHX:D=N:T=9358])speciation:0.020456[&&NHX:D=N:B=76:T=9348:DD=])speciation:0.001941[&&NHX:D=N:T=9347:B=0:DD=],((TP63_LafrENSLAFP00000020806:0.016207[&&NHX:D=N:T=9785],TP63_PcapENSPCAP00000004708:0.030306[&&NHX:D=N:T=9813])speciation:0.00755[&&NHX:D=N:T=311790:B=91:DD=],TP63_EtelENSETEP00000001864:0.071017[&&NHX:D=N:T=9371])speciation:0.015236[&&NHX:D=N:T=311790:B=8:DD=])speciation:0.007477[&&NHX:D=N:B=0:T=9347:DD=])duplication:0.052158[&&NHX:DD=Y:B=0:T=9347:D=],((TP63_MdomENSMODP00000018831:0.034607[&&NHX:D=N:T=13616],TP63_MeugENSMEUP00000014131:0.045944[&&NHX:D=N:T=9315])speciation:0.011561[&&NHX:D=N:T=9263:B=100:DD=],TP63_SharENSSHAP00000008666:0.303146[&&NHX:D=N:T=9305])speciation:0.054652[&&NHX:D=N:B=12:T=9263:DD=])speciation:0.017647[&&NHX:D=N:B=2:T=32525:DD=],TP63_OanaENSOANP00000021753:0.079276[&&NHX:D=N:T=9258])speciation:0.043447[&&NHX:D=N:T=40674:B=2:DD=])speciation:0.034349[&&NHX:D=N:T=32524:B=0:DD=],tp63_XtroENSXETP00000055541:0.267401[&&NHX:D=N:T=8364])speciation:0.032348[&&NHX:D=N:B=0:T=32523:DD=],(ENSACAG00000002961_AcarENSACAP00000002870:0.0[&&NHX:D=N:T=28377],ENSACAG00000022533_AcarENSACAP00000021196:1.16541[&&NHX:D=N:T=28377])duplication:0.116614[&&NHX:D=Y:T=28377:B=0])duplication:0.005373[&&NHX:D=Y:T=32523:B=0],TP63_LchaENSLACP00000022643:0.17787[&&NHX:D=N:T=7897])speciation:0.031924[&&NHX:D=N:T=8287:B=0:DD=],(((((((tp63_PforENSPFOP00000001124:0.014737[&&NHX:D=N:T=48698],tp63_XmacENSXMAP00000016461:0.044393[&&NHX:D=N:T=8083])speciation:0.052269[&&NHX:D=N:B=99:T=586240:DD=],tp63_OlatENSORLP00000019616:0.105223[&&NHX:D=N:T=8090])speciation:0.020917[&&NHX:D=N:B=24:T=1489913:DD=],tp63_OnilENSONIP00000024326:0.065197[&&NHX:D=N:T=8128])speciation:0.01928[&&NHX:D=N:T=1489908:B=16:DD=],(tp63_TnigENSTNIP00000016776:0.042973[&&NHX:D=N:T=99883],tp63_TrubENSTRUP00000008025:0.048688[&&NHX:D=N:T=31033])speciation:0.043668[&&NHX:D=N:B=100:T=31031:DD=])speciation:0.020832[&&NHX:D=N:B=77:T=1489872:DD=],(ENSGACG00000013629_GacuENSGACP00000018012:0.069577[&&NHX:D=N:T=69293],ENSGMOG00000000413_GmorENSGMOP00000000401:0.110102[&&NHX:D=N:T=8049])speciation:0.067443[&&NHX:D=N:B=97:T=123368:DD=])duplication:0.040724[&&NHX:DD=Y:B=65:T=123368:D=],(tp63_AmexENSAMXP00000004961:0.092792[&&NHX:D=N:T=7994],tp63_DrerENSDARP00000108362:0.121291[&&NHX:D=N:T=7955])speciation:0.046115[&&NHX:D=N:T=186626:B=86:DD=])speciation:0.034365[&&NHX:D=N:T=186625:B=37:DD=],tp63_LocuENSLOCP00000006202:0.102939[&&NHX:D=N:T=7918])speciation:0.049371[&&NHX:D=N:B=52:T=41665:DD=])speciation:0.110844[&&NHX:D=N:B=0:T=117571:DD=],(((((((((((TP73_LafrENSLAFP00000005892:0.029578[&&NHX:D=N:T=9785],TP73_PcapENSPCAP00000000662:0.051492[&&NHX:D=N:T=9813])speciation:0.003183[&&NHX:D=N:T=311790:B=90:DD=],TP73_EtelENSETEP00000007165:0.095673[&&NHX:D=N:T=9371])speciation:0.033805[&&NHX:D=N:T=311790:B=0:DD=],TP73_DnovENSDNOP00000028722:0.457081[&&NHX:D=N:T=9361])speciation:0.006287[&&NHX:D=N:B=0:T=9347:DD=],((((((((TP73_BtauENSBTAP00000007643:0.009498[&&NHX:D=N:T=9913],TP73_OariENSOARP00000017005:0.019572[&&NHX:D=N:T=9940])speciation:0.012531[&&NHX:D=N:T=9895:B=100:DD=],ENSSSCG00000025685_SscrENSSSCP00000022771:0.057187[&&NHX:D=N:T=9823])speciation:0.018712[&&NHX:D=N:T=91561:B=1:DD=],TP73_TtruENSTTRP00000003223:0.039795[&&NHX:D=N:T=9739])speciation:0.015091[&&NHX:D=N:T=91561:B=0:DD=],(((TP73_AmelENSAMEP00000009745:0.040276[&&NHX:D=N:T=9646],TP73_MpfuENSMPUP00000007349:0.069423[&&NHX:D=N:T=9669])speciation:0.011068[&&NHX:D=N:B=5:T=379584:DD=],TP73_CfamENSCAFP00000028819:0.025289[&&NHX:D=N:T=9615])speciation:0.003214[&&NHX:D=N:B=4:T=379584:DD=],TP73_FcatENSFCAP00000010792:0.059719[&&NHX:D=N:T=9685])speciation:0.021832[&&NHX:D=N:B=20:T=33554:DD=])speciation:0.009094[&&NHX:D=N:T=314145:B=0:DD=],TP73_PvamENSPVAP00000008433:0.078992[&&NHX:D=N:T=132908])speciation:0.005352[&&NHX:D=N:T=314145:B=0:DD=],TP73_EeurENSEEUP00000011975:0.098606[&&NHX:D=N:T=9365])speciation:0.0[&&NHX:D=N:B=0:T=314145:DD=],TP73_EcabENSECAP00000001313:0.038035[&&NHX:D=N:T=9796])speciation:0.007356[&&NHX:D=N:T=314145:B=0:DD=],((((((Trp73_MsspMGP_SPRETEiJ_P0068738:0.0082[&&NHX:D=N:T=10096],Trp73_MmusENSMUSP00000101269:0.011834[&&NHX:D=N:T=10090])speciation:0.027464[&&NHX:D=N:B=100:T=862507:DD=],Tp73_RnorENSRNOP00000052265:0.034464[&&NHX:D=N:T=10116])speciation:0.085459[&&NHX:D=N:T=39107:B=100:DD=],TP73_ItriENSSTOP00000022492:0.061184[&&NHX:D=N:T=43179])speciation:0.008334[&&NHX:D=N:B=2:T=33553:DD=],Trp73_DordENSDORP00000013966:0.076743[&&NHX:D=N:T=10020])speciation:0.0[&&NHX:D=N:T=33553:B=0:DD=],TP73_CporENSCPOP00000009800:0.075508[&&NHX:D=N:T=10141])speciation:0.004958[&&NHX:D=N:T=9989:B=0:DD=],((TP73_MmurENSMICP00000031305:0.033995[&&NHX:D=N:T=30608],TP73_OgarENSOGAP00000005402:0.043894[&&NHX:D=N:T=30611])speciation:0.017054[&&NHX:D=N:T=376911:B=93:DD=],((((((TP73_GgorENSGGOP00000015180:0.00182[&&NHX:D=N:T=9595],TP73_HsapENSP00000367545:0.005775[&&NHX:D=N:T=9606])speciation:0.0[&&NHX:D=N:T=207598:B=92:DD=],TP73_PtroENSPTRP00000000118:0.05274[&&NHX:D=N:T=9598])speciation:0.005412[&&NHX:D=N:B=81:T=207598:DD=],TP73_PabeENSPPYP00000002277:0.013149[&&NHX:D=N:T=9601])speciation:0.000495[&&NHX:D=N:B=30:T=9604:DD=],TP73_NleuENSNLEP00000009887:0.326917[&&NHX:D=N:T=61853])speciation:0.010918[&&NHX:D=N:T=314295:B=0:DD=],((TP73_PanuENSPANP00000007545:0.004788[&&NHX:D=N:T=9555],TP73_CsabENSCSAP00000017283:0.012519[&&NHX:D=N:T=60711])speciation:0.000519[&&NHX:D=N:T=9528:B=86:DD=],TP73_MmulENSMMUP00000040655:0.025402[&&NHX:D=N:T=9544])speciation:0.013713[&&NHX:D=N:B=75:T=9528:DD=])speciation:0.010332[&&NHX:D=N:T=9526:B=0:DD=],TP73_CjacENSCJAP00000005070:0.291972[&&NHX:D=N:T=9483])speciation:0.022859[&&NHX:D=N:B=0:T=314293:DD=])speciation:0.014731[&&NHX:D=N:B=0:T=9443:DD=])speciation:0.020217[&&NHX:D=N:T=314146:B=0:DD=])speciation:0.01086[&&NHX:D=N:T=1437010:B=0:DD=])speciation:0.048685[&&NHX:D=N:T=9347:B=0:DD=],ENSSSCG00000003361_SscrENSSSCP00000003644:0.097446[&&NHX:D=N:T=9823])duplication:0.016508[&&NHX:D=Y:T=9347:B=0],((TP73_MeugENSMEUP00000000705:0.023362[&&NHX:D=N:T=9315],TP73_MdomENSMODP00000008216:0.259151[&&NHX:D=N:T=13616])speciation:0.035881[&&NHX:D=N:B=57:T=9263:DD=],TP73_SharENSSHAP00000006513:0.042193[&&NHX:D=N:T=9305])speciation:0.069704[&&NHX:D=N:T=9263:B=36:DD=])speciation:0.023293[&&NHX:D=N:T=32525:B=2:DD=],TP73_OanaENSOANP00000019815:0.30572[&&NHX:D=N:T=9258])speciation:0.017992[&&NHX:D=N:B=0:T=40674:DD=],(((((TP73_GgalENSGALP00000001485:0.002093[&&NHX:D=N:T=9031],TP73_MgalENSMGAP00000001059:0.036491[&&NHX:D=N:T=9103])speciation:0.047733[&&NHX:D=N:T=9005:B=100:DD=],TP73_AplaENSAPLP00000003415:0.02254[&&NHX:D=N:T=8839])speciation:0.021618[&&NHX:D=N:T=1549675:B=97:DD=],(TP73_TgutENSTGUP00000002829:0.010561[&&NHX:D=N:T=59729],TP73_FalbENSFALP00000010031:0.030208[&&NHX:D=N:T=59894])speciation:0.023763[&&NHX:D=N:T=9126:B=100:DD=])speciation:0.016346[&&NHX:D=N:B=97:T=8825:DD=],TP73_PsinENSPSIP00000004448:0.109544[&&NHX:D=N:T=13735])speciation:0.026517[&&NHX:D=N:T=1329799:B=84:DD=],TP73_AcarENSACAP00000001746:0.128451[&&NHX:D=N:T=28377])speciation:0.019965[&&NHX:D=N:B=67:T=32561:DD=])speciation:0.036745[&&NHX:D=N:T=32524:B=15:DD=],tp73_XtroENSXETP00000010981:0.182635[&&NHX:D=N:T=8364])speciation:0.011019[&&NHX:D=N:B=1:T=32523:DD=],TP73_LchaENSLACP00000021702:0.142378[&&NHX:D=N:T=7897])speciation:0.024057[&&NHX:D=N:B=0:T=8287:DD=],((((((tp73_TnigENSTNIP00000014938:0.027328[&&NHX:D=N:T=99883],tp73_TrubENSTRUP00000038165:0.032469[&&NHX:D=N:T=31033])speciation:0.059199[&&NHX:D=N:T=31031:B=100:DD=],tp73_GacuENSGACP00000008676:0.048591[&&NHX:D=N:T=69293])speciation:0.007086[&&NHX:D=N:T=1489922:B=29:DD=],(((tp73_PforENSPFOP00000010896:0.013197[&&NHX:D=N:T=48698],tp73_XmacENSXMAP00000017403:0.030558[&&NHX:D=N:T=8083])speciation:0.063838[&&NHX:D=N:B=100:T=586240:DD=],tp73_OlatENSORLP00000005521:0.062083[&&NHX:D=N:T=8090])speciation:0.017304[&&NHX:D=N:B=58:T=1489913:DD=],tp73_OnilENSONIP00000002627:0.053778[&&NHX:D=N:T=8128])speciation:0.014746[&&NHX:D=N:T=1489908:B=29:DD=])speciation:0.072637[&&NHX:D=N:B=14:T=1489872:DD=],tp73_GmorENSGMOP00000016675:0.181445[&&NHX:D=N:T=8049])speciation:0.038065[&&NHX:D=N:T=123368:B=98:DD=],(tp73_AmexENSAMXP00000014358:0.086906[&&NHX:D=N:T=7994],tp73_DrerENSDARP00000109674:0.134572[&&NHX:D=N:T=7955])speciation:0.064476[&&NHX:D=N:T=186626:B=100:DD=])speciation:0.04364[&&NHX:D=N:T=186625:B=43:DD=],tp73_LocuENSLOCP00000006343:0.115822[&&NHX:D=N:T=7918])speciation:0.046704[&&NHX:D=N:T=41665:B=14:DD=])speciation:0.167736[&&NHX:D=N:T=117571:B=27:DD=])duplication:0.067299[&&NHX:D=Y:B=0:T=117571],tp63_PmarENSPMAP00000007639:0.797694[&&NHX:D=N:T=7757])speciation:0.076045[&&NHX:D=N:T=7742:B=0:DD=],(('p53/p73-b CintENSCINP00000004447':0.450754[&&NHX:D=N:T=7719],ENSCSAVG00000009788_CsavENSCSAVP00000016659:0.47517[&&NHX:D=N:T=51511])speciation:0.378426[&&NHX:D=N:B=100:T=7718:DD=],(ENSCING00000001960_CintENSCINP00000003956:0.141945[&&NHX:D=N:T=7719],ENSCSAVG00000009964_CsavENSCSAVP00000016940:0.26284[&&NHX:D=N:T=51511])speciation:0.525939[&&NHX:D=N:T=7718:B=100:DD=])duplication:0.603292[&&NHX:D=Y:B=100:T=7718])duplication:0.0[&&NHX:D=N:T=7711:B=0:DD=];\",\n }\n\n // this make able the corner placement for all UI elements inside\n this.container_d3.style('position', 'relative')\n\n // remove previous placeholder & UI\n this.container_d3.selectAll(\".corner_placeholder\").remove()\n this.container_d3.selectAll(\".modal_data\").remove()\n this.remove_scale()\n this.remove_all_color_legend()\n this.container_d3.selectAll(\".menu_settings\").remove()\n this.container_d3.selectAll(\".empty_message\").remove()\n this.container_d3.select('#histogram-legend').remove();\n\n // remove old meta modal with document. function\n document.querySelectorAll('#modal_meta_' + this.container_object.uid).forEach((el) => { el.remove() })\n document.querySelectorAll('#exampleModal' + this.container_object.uid).forEach((el) => { el.remove() })\n\n this.container_d3.select(\"#menu-node\").remove()\n\n/*\n if (phylo.phylo_embedded && !empty_mode){\n\n tooltip_object[0].hide()\n tooltip_object[3].hide()\n\n\n }\n\n\n */\n\n\n if (empty_mode){\n this.top_left = this.add_top_left_container()\n this.add_data_icon()\n this.add_empty_message()\n return\n }\n\n // Create corner placeholder for UI elements\n this.bottom_left = this.add_bottom_left_container()\n this.bottom_right = this.add_bottom_right_container()\n this.top_left = this.add_top_left_container()\n this.top_right = this.add_top_right_container()\n\n // BOTTOM LEFT\n if (this.viewer.model.settings.use_branch_lenght) {\n this.scale_text = this.add_scale()\n }\n this.loader = this.bottom_left.append('text').style('color', 'red').style('font-size', 'small')\n if (this.container_object.message_loader){\n this.update_loader_message()\n }\n //this.add_root_badge()\n\n // BOTTOM RIGHT\n\n if (this.viewer.model.big_tree){\n this.add_rescale_zoom()\n }\n this.add_maximise()\n this.add_fit_height()\n this.add_zoom()\n\n // TOP LEFT\n if (!this.api.settings.phylostratigraphy) {\n if (this.container_object.models.length > 0) {\n this.add_toggle()\n }\n this.add_data_icon()\n }\n\n // TOP RIGHT\n this.add_search()\n this.add_export()\n this.add_meta()\n this.add_settings()\n this.add_undo()\n this.add_redo()\n\n\n\n // COLOR LEGEND\n if (this.api.settings.compareMode || (this.viewer.model.settings.style.color_accessor['node'] !== null && this.viewer.model.settings.style.color_accessor['node'] !== 'Topology' )){\n this.add_color_legend('node')\n }\n\n\n if (this.viewer.model.settings.style.color_accessor['leaf'] !== null && !this.viewer.model.settings.sync_coloring){\n\n this.viewer.model.set_color_scale('leaf', this.api)\n this.add_color_legend('leaf')\n }\n\n if (this.viewer.model.settings.style.color_accessor['circle'] !== null){\n\n this.viewer.model.set_color_scale('circle', this.api)\n this.add_color_legend('circle')\n }\n\n // Add Stack\n if (this.viewer.model.settings.has_histogram_data && this.viewer.model.settings.show_histogram){\n\n this.add_histogram_legend();\n\n }\n\n }\n\n // MODAL\n\n add_modal_edit_label(node, type){\n\n var mod_html = `\n <div class=\"modal\" id=\"exampleModal_edit\" tabindex=\"-1\">\n <div class=\"modal-dialog modal-dialog-centered modal-lg\">\n <div class=\"modal-content\">\n \n <div class=\"modal-header\" style=\"height: 128px;border:none !important\">\n <h3 class=\"modal-title\" id=\"exampleModalLabel\" style=\"margin: auto; text-align: center\">\n <b>Edit Label</b> <br>\n \n \n </h3>\n \n </div>\n \n <div class=\"modal-body\" style=\"background-color: #f8f9fa; padding: 24px 48px;\">\n \n \n \n <input type=\"text\" id=\"inputPassword6\" class=\"form-control mx-sm-3\" value=\"123456789\">\n \n \n \n \n \n </div>\n \n \n <div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-primary\" id=\"edit_modal_save\">Save changes</button>\n <button type=\"button\" class=\"btn btn-secondary\" id=\"edit_modal_close\" data-dismiss=\"modal\">Close</button>\n </div>\n \n \n </div>\n\n </div>\n </div>\n </div>\n`\n\n if (type == 'Default' || type == false){\n mod_html = mod_html.replace('123456789', node.data.name)\n }\n else{\n mod_html = mod_html.replace('123456789', node.data.extended_informations[type])\n }\n\n document.getElementById(this.container_object.div_id).insertAdjacentHTML('afterend',mod_html)\n\n document.getElementById('edit_modal_save').addEventListener('click', () => {\n\n\n if (type == 'Default' || type == false){\n node.data.name = document.getElementById('inputPassword6').value;\n }\n else{\n node.data.extended_informations[type] = document.getElementById('inputPassword6').value;\n }\n\n\n\n this.viewer.build_d3_cluster()\n this.viewer.render(node)\n\n document.getElementById('exampleModal_edit').remove()\n document.getElementsByClassName('modal-backdrop')[0].remove()\n\n })\n\n\n document.getElementById('edit_modal_close').addEventListener('click', () => {\n document.getElementById('exampleModal_edit').remove();\n document.getElementsByClassName('modal-backdrop')[0].remove()\n })\n\n\n }\n\n // PLACEHOLDER\n add_bottom_left_container() {\n return this.container_d3.append(\"div\")\n .attr(\"class\",\"corner_placeholder bottom left\")\n .style(\"flex-direction\", \"column\")\n }\n add_bottom_right_container(){\n return this.container_d3.append(\"div\")\n .attr(\"class\",\"corner_placeholder bottom right\")\n .style(\"flex-direction\", \"column\")\n .style( \"align-items\", \"flex-end\")\n }\n add_top_left_container(){\n return this.container_d3.append(\"div\")\n .attr(\"class\",\"corner_placeholder top left\")\n }\n add_top_right_container(){\n var div = this.container_d3.append(\"div\").attr(\"class\",\"corner_placeholder top right\")\n .style(\"flex-direction\",'column')\n .style(\"align-items\",'end')\n\n this.tr_buttons = div.append(\"div\").attr(\"class\",\"tr-button\").style(\"display\",'flex')\n\n this.tr_menus = div.append(\"div\").attr(\"class\",\"tr-menus\")\n\n return div\n }\n\n update_loader_message(){\n this.loader.text(this.container_object.message_loader)\n }\n\n\n add_histogram_legend() {\n\n\n d3__WEBPACK_IMPORTED_MODULE_1__.select('#histogram-legend').remove();\n\n var width = 230;\n var height = 80;\n var svgHeight = height + 25;\n var legendRectSize = 20;\n var left_margin = 25;\n var top_margin = 50;\n\n if (this.api.settings.phylostratigraphy){\n top_margin = 25;\n }\n\n var legendTxtSize = 13;\n // center text in the middle of the legend colored rectangle, rounding it to smaller Y-value\n var legendTxtYPadding = (legendRectSize + legendTxtSize) / 2\n\n if(this.viewer.model.settings.stack.type == \"genes\"){\n var dataLabels = [\"Gained\", \"Duplicated\", \"Retained\", \"Lost\" ]\n } else {\n var dataLabels = [\"Gains\", \"Duplications\", \"Losses\" ]\n }\n\n // to position legends correctly\n var rects = dataLabels.length - 1;\n\n\n var legendSvg = this.viewer.svg.append(\"svg\")\n .attr(\"id\", \"histogram-legend\")\n .attr(\"x\", left_margin)\n .attr(\"y\", top_margin)\n .attr(\"width\", width + \"px\")\n .attr(\"height\", svgHeight + \"px\")\n .append(\"g\")\n\n\n legendSvg.append(\"line\")\n .attr(\"x1\", 0)\n .attr(\"y1\", rects * legendRectSize)\n .attr(\"x2\", 200)\n .attr(\"y2\", rects * legendRectSize)\n .attr(\"class\", \"divline\")\n .attr(\"stroke-width\", 2)\n .attr(\"stroke\", \"black\");\n\n legendSvg.selectAll('rect')\n .data(dataLabels)\n .enter()\n .append('rect')\n .attr('x', 110)\n .attr('y', function(d, i){\n return i * legendRectSize;\n })\n .attr('width', legendRectSize)\n .attr('height', legendRectSize)\n .attr('fill', (d, i, node) => {\n return this.viewer.settings.stack.colorMap[d];\n });\n\n legendSvg.selectAll('text')\n .data(dataLabels)\n .enter()\n .append('text')\n .text(function(d){\n return d;\n })\n .attr('x', 110 + legendRectSize + 5)\n .attr('y', function(d, i){\n return i * legendRectSize + legendTxtYPadding;\n })\n .attr('text-anchor', 'start')\n .attr('alignment-baseline', 'baseline')\n .attr(\"font-size\", legendTxtSize).attr(\"stroke\", \"black\");\n\n\n legendSvg\n .append('text')\n .attr(\"class\", \"legendGeneTotal\")\n .text(\"Total # of \"+this.viewer.model.settings.stack.type)\n .attr('x', 0)\n .attr('y', rects * legendRectSize - 5)\n .attr('text-anchor', 'start')\n .attr(\"font-size\", legendTxtSize).attr(\"stroke\", \"black\");\n\n d3__WEBPACK_IMPORTED_MODULE_1__.selectAll(\".legendGeneTotal\").moveToFront();\n\n }\n\n // DATA ICON\n\n get_modal_adder_corpus(){\n return `\n \n <div class=\"container-fluid\">\n \n <div class=\"card\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 1: Add data from text or file</b> </h5>\n \n \n <div class=\"row\" style=\" margin-left: 24px\">\n <div class=\"col\" >\n <textarea class=\"form-control\" placeholder=\"Paste or type your tree here\" id=\"exampleFormControlTextarea1s\" rows=\"3\"></textarea>\n\n\n </div>\n <div class=\"col-1 my-auto \"><p class=\"align-middle\" style=\"margin: 0px;\"><b>OR</b></p></div>\n <div class=\"col my-auto\">\n\n <div class=\"input-group mb-3\" style=\"padding-left: 24px;\">\n <input class=\"form-control\" type=\"file\" id=\"add_tree_file_input\"> <div class=\"input-group-append\">\n </div>\n </div>\n\n\n </div>\n </div>\n\n <div class=\"row\" style=\"margin-left: 24px\">\n <div class=\"col\" >\n <h6 class=\"card-subtitle mb-2 text-muted\" style=\"margin-top: 6px\"><small>Example: <a href=\"#\" class=\"t1\">tree #1</a>, <a href=\"#\" class=\"t2\">tree #2</a>, <a href=\"#\" class=\"tbig\">big tree</a>, <a href=\"#\" class=\"nhx_ex\">Extended Newick</a>.</small></h6>\n </div>\n </div>\n \n </div>\n\n \n </div>\n \n <br>\n \n <div class=\"card\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 2: Choose tree data format </b> </h5>\n \n \n <div class=\"text-center\">\n\n <select class=\"custom-select\" id=\"add_tree_str_select\" style=\"margin-left: 24px;\">\n <option selected value=\"newick\">Newick</option>\n <option value=\"nhx\">Extended Newick</option>\n <option value=\"phyloxml\">PhyloXML</option>\n </select>\n\n\n </div>\n \n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"internal_for_branch\" >\n <label class=\"form-check-label\" for=\"flexCheckDefault\">\n Use internal label for branches (e.g. boostrap values)\n </label>\n </div>\n \n \n \n </div>\n\n \n </div>\n \n <br>\n \n \n \n <div class=\"card\">\n <div class=\"card-body\">\n <div style=\"cursor: pointer;\" id=\"toggleStep3\">\n <h5>\n <b>Step 3 (Optional): Add a mapping file</b>\n <a href=\"#\" id=\"menu_help_add_tree\">\n <i class=\"bi-question-circle\"></i>\n </a>\n <i class=\"bi-caret-down float-end\" id=\"caretStep3\"></i>\n <small class=\"float-end\" id=\"expandStep3\">Expand</small>\n </h5>\n </div>\n <br>\n <div id=\"collapseStep3\" style=\"display: none;\">\n STEP3__\n </div>\n </div>\n</div>\n \n <br>\n \n <div style=\"margin: auto; width: fit-content;\">\n \n \n <button type=\"button\" class=\"btn btn-danger\" data-bs-dismiss=\"modal\">Cancel</button>\n <button type=\"button\" id=\"modal_add_tree_final_button\" class=\"btn btn-success\" data-bs-dismiss=\"modal\" >Upload tree</button>\n \n </div>\n \n </div>\n \n \n \n `\n\n\n }\n\n add_data_icon() {\n\n this.container_d3.select(\"#exampleModal\" + this.container_object.uid).remove()\n\n var b = this.top_left.append('button')\n .attr('class', ' dashed_button')\n .attr('id', 'buttonmodal_' + this.container_object.div_id)\n .attr('data-bs-toggle', 'modal')\n .attr('data-bs-target', '#exampleModal' + this.container_object.uid)\n .attr('data-bs-placement', 'right')\n .attr('title', 'Add a new tree')\n .append(\"div\")\n .attr(\"class\", \"label\")\n\n b.html(\" <i class='bi bi-plus' style='color:#888'></i> Add tree\")\n\n let mod_html = this.get_modal_template()\n\n mod_html = mod_html.replace('TEMPLATE_CORPUS', this.get_modal_adder_corpus())\n mod_html = mod_html.replace('TITLE_', 'Upload your tree')\n mod_html = mod_html.replace('SUB_TITLE_', '')\n mod_html = mod_html.replace('STEP3__', this.get_modal_meta_corpus())\n\n\n mod_html = mod_html.replace('exampleFormControlTextarea1s', 'exampleFormControlTextarea1s' + this.container_object.uid)\n mod_html = mod_html.replace('add_tree_file_input', 'add_tree_file_input' + this.container_object.uid)\n mod_html = mod_html.replace('exampleModal', 'exampleModal' + this.container_object.uid)\n mod_html = mod_html.replace('add_tree_str_select', 'add_tree_str_select' + this.container_object.uid)\n mod_html = mod_html.replace('internal_for_branch', 'internal_for_branch' + this.container_object.uid)\n mod_html = mod_html.replace('modal_add_tree_final_button', 'modal_add_tree_final_button' + this.container_object.uid)\n mod_html = mod_html.replace('upload_mapping_close', 'upload_mapping_close' + this.container_object.uid)\n mod_html = mod_html.replace('upload_mapping_validation', 'upload_mapping_validation' + this.container_object.uid)\n\n // META CORPUS\n\n mod_html = mod_html.replaceAll('add_meta_file_input', 'tree_adder_modal_add_mapping_file_input' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card2', 'tree_adder_mod_meta_card2_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card3', 'tree_adder_mod_meta_card3_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card2_radio', 'tree_adder_mod_meta_card2_radio' + this.container_object.uid)\n\n mod_html = mod_html.replace('flexCheckChecked', 'tree_adder_flexCheckChecked' + this.container_object.uid)\n mod_html = mod_html.replace('flexCheckDefault', 'tree_adder_flexCheckDefault' + this.container_object.uid)\n\n mod_html = mod_html.replace('mapping_check_nodes', 'tree_adder_mapping_check_nodes' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_check_leaf', 'tree_adder_mapping_check_leaf' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_apply_to_all', 'tree_adder_mapping_apply_to_all' + this.container_object.uid)\n\n\n mod_html = mod_html.replaceAll('add_mapping_ref_select', 'add_mapping_ref_select' + this.container_object.uid)\n\n mod_html = mod_html.replace('collapseStep3', 'collapse3' + this.container_object.uid)\n mod_html = mod_html.replace('toggleStep3', 'toggle3' + this.container_object.uid)\n mod_html = mod_html.replace('caretStep3', 'caret3' + this.container_object.uid)\n mod_html = mod_html.replace('expandStep3', 'expand3' + this.container_object.uid)\n\n\n document.getElementById(this.container_object.div_id).insertAdjacentHTML('afterend', mod_html)\n\n // Add code for the toggle functionality\n\n const toggleElement = document.getElementById('toggle3' + this.container_object.uid);\n const contentElement = document.getElementById('collapse3' + this.container_object.uid);\n const caretElement = document.getElementById('caret3' + this.container_object.uid);\n const expandTextElement = document.getElementById('expand3' + this.container_object.uid);\n\n toggleElement.addEventListener('click', () => {\n const isHidden = contentElement.style.display === 'none';\n contentElement.style.display = isHidden ? 'block' : 'none';\n caretElement.className = isHidden ? 'bi-caret-up float-end' : 'bi-caret-down float-end';\n expandTextElement.textContent = isHidden ? 'Collapse' : 'Expand';\n });\n\n\n\n var modmod = document.getElementById('exampleModal' + this.container_object.uid);\n\n var thaty = this\n\n const add_tree_helpers = function (container_object, str, format, mapping) {\n\n var mapping = (typeof mapping == 'undefined') ? false : mapping;\n\n container_object.add_tree(str, {'data_type': format})\n container_object.current_model = container_object.models.length - 1\n\n // check if internal_for_branch is checked or not and setup default_internal_label_is_for_branch\n\n if (document.getElementById('internal_for_branch' + container_object.uid).checked) {\n container_object.models[container_object.current_model].settings.edge_related_data.push('Data');\n }\n\n if (mapping !== false) {\n\n if (mapping.parameters.apply_to_all) {\n\n // apply add_meta_leaves to all models in the container\n container_object.models.forEach((model) => {\n\n model.settings.use_meta_for_leaf = mapping.parameters.use_meta_for_leaf\n model.settings.use_meta_for_node = mapping.parameters.use_meta_for_node\n\n if (mapping.parameters.use_meta_for_leaf) {\n model.add_meta_leaves(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n if (mapping.parameters.use_meta_for_node) {\n model.add_meta_nodes(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n\n\n })\n\n }\n else {\n\n let moddy = container_object.models[container_object.current_model]\n\n moddy.settings.use_meta_for_leaf = mapping.parameters.use_meta_for_leaf\n moddy.settings.use_meta_for_node = mapping.parameters.use_meta_for_node\n\n if (moddy.settings.use_meta_for_leaf) {\n moddy.add_meta_leaves(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n\n if (moddy.settings.use_meta_for_node) {\n moddy.add_meta_nodes(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n\n\n }\n\n\n }\n\n\n document.querySelector('#exampleModal' + container_object.uid).style.display = 'none'\n document.querySelectorAll('.modal-backdrop').forEach(elem => {\n elem.parentNode.removeChild(elem);\n });\n container_object.viewer.set_data(container_object.models[container_object.current_model]);\n container_object.api.stop_all_workers()\n container_object.compute_topology_and_render_bounded_viewer()\n container_object.viewer.render(container_object.viewer.hierarchy);\n //container_object.viewer.update_collapse_level(container_object.models[container_object.current_model].settings.collapse_level)\n\n if (mapping) {\n thaty.open_color_settings()\n }\n\n\n if (thaty.api.settings.compute_distance && thaty.api.bound_container.includes(thaty)) {\n thaty.api.send_worker_distance()\n }\n }\n\n const add_data_from_modal = (format) => {\n\n // mapping information\n var mapping_file = document.getElementById('tree_adder_modal_add_mapping_file_input' + that.container_object.uid).files[0];\n\n\n let s = document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value\n\n if (s.length > 0) {\n\n if (mapping_file) {\n\n var parameters = that.get_mapping_parameter_from_UI(true)\n\n\n const reader = new FileReader();\n\n reader.addEventListener('load', (event) => {\n\n var meta = []\n var ref_id = parameters.reference\n\n if (mapping_file.name.split('.').pop() == 'tsv') {\n d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n } else {\n d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n }\n\n\n add_tree_helpers(this.container_object, s, format, {'meta': meta, 'parameters': parameters})\n return\n\n\n });\n reader.readAsText(mapping_file);\n\n\n } else {\n add_tree_helpers(this.container_object, s, format)\n return\n }\n\n\n }\n\n var file = document.getElementById('add_tree_file_input' + this.container_object.uid).files[0];\n\n if (file) {\n var reader = new FileReader();\n reader.readAsText(file, \"UTF-8\");\n reader.onload = (evt) => {\n\n if (mapping_file) {\n var parameters = that.get_mapping_parameter_from_UI(true)\n\n const reader = new FileReader();\n\n reader.addEventListener('load', (event) => {\n\n var meta = []\n\n var ref_id = parameters.reference\n\n\n if (mapping_file.name.split('.').pop() == 'tsv') {\n d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n } else {\n d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n }\n\n add_tree_helpers(this.container_object, evt.target.result, format, {\n 'meta': meta,\n 'parameters': parameters\n })\n return\n\n\n });\n reader.readAsText(mapping_file);\n\n\n } else {\n add_tree_helpers(this.container_object, evt.target.result, format)\n return\n }\n\n\n }\n reader.onerror = function (evt) {\n console.log(\"error reading file\")\n }\n }\n\n\n }\n\n document.getElementById('modal_add_tree_final_button' + this.container_object.uid).onclick = () => {\n\n\n var e = document.getElementById('add_tree_str_select' + this.container_object.uid);\n\n add_data_from_modal(e.value)\n }\n\n modmod.getElementsByClassName('t1')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.small1\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('t1')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.small1\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('t2')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.small2\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('tbig')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.big\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('nhx_ex')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.nhx\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'nhx'\n };\n\n\n // META DATA UPLOADER\n document.getElementById('upload_mapping_validation' + this.container_object.uid).style.display = 'none'\n document.getElementById('upload_mapping_close' + this.container_object.uid).style.display = 'none'\n\n\n var x = modmod.getElementsByClassName('card')\n for (var i = 0; i < x.length; i++) {\n x[i].style.border = 'none';\n }\n\n // Add JS for modal corpus\n var that = this\n\n document.getElementById('tree_adder_modal_add_mapping_file_input' + this.container_object.uid).onchange = function () {\n let input = this.files[0];\n\n if (input) {\n\n document.getElementById('tree_adder_mod_meta_card2_' + that.container_object.uid).style.display = 'block'\n document.getElementById('tree_adder_mod_meta_card3_' + that.container_object.uid).style.display = 'block'\n\n var reader = new FileReader();\n var data;\n\n reader.addEventListener(\"load\", parseFile, false);\n reader.readAsText(input);\n\n function parseFile() {\n\n // load data\n if (input.name.split('.').pop() == 'tsv') {\n data = d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(reader.result, function (d) {\n return d;\n });\n } else {\n\n data = d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(reader.result, function (d) {\n return d;\n });\n\n }\n\n\n // Get columns + types\n var numerisator = {}\n numerisator['id'] = 'cat'\n data['columns'].forEach((currentElement) => {\n if (currentElement != 'id') {\n numerisator[currentElement] = 'num'\n }\n })\n data.forEach((currentElement) => {\n for (var key of Object.keys(numerisator)) {\n if (isNaN(currentElement[key])) {\n numerisator[key] = 'cat'\n }\n }\n })\n\n\n // Add columns to select\n var select = document.getElementById('add_mapping_ref_select' + that.container_object.uid)\n select.innerHTML = '';\n\n for (var key of Object.keys(numerisator)) {\n var opt = document.createElement('option');\n opt.value = key;\n opt.innerHTML = key;\n select.appendChild(opt);\n }\n\n\n // creates radios\n var radio_container = document.getElementById('tree_adder_mod_meta_card2_radio' + that.container_object.uid)\n radio_container.innerHTML = '';\n\n var get_el = function () {\n return `\n \n <div style = \"padding: 12px 24px 0;\"> <span><b style = \"margin-right: 12px\" > Column: </b> \"NAME_\"</span> <br>\n\n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input \" name=\"flexRadioDefault\" type=\"radio\" value=\"num\" id=\"RADIO_1\" ATTR_NUM>\n <label class=\"form-check-label\" for=\"RADIO_1\">\n Numerical\n </label>\n </div>\n \n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"cat\" id=\"RADIO_2\" ATTR_CAT>\n <label class=\"form-check-label\" for=\"RADIO_2\">\n Categorical\n </label>\n </div>\n \n <div class=\"form-check\" style=\"margin-left: 24px\">\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"color\" id=\"RADIO_3\" ATTR_COLOR>\n <label class=\"form-check-label\" for=\"RADIO_3\">\n Color\n </label>\n </div>\n \n \n \n \n \n \n \n </div>\n `\n }\n\n // clean potential old radiobox\n\n for (var key of Object.keys(numerisator)) {\n\n var rad = get_el()\n\n\n rad = rad.replace('NAME_', key)\n rad = rad.replaceAll('flexRadioDefault', 'tree_adder_flexRadioDefault_' + key + that.container_object.uid)\n rad = rad.replace('RADIO_1', that.container_object.uid + 'mapping_header_radiotree_adder_1' + '__' + key)\n rad = rad.replace('RADIO_2', that.container_object.uid + 'mapping_header_radiotree_adder_2' + '__' + key)\n rad = rad.replace('RADIO_3', that.container_object.uid + 'mapping_header_radiotree_adder_3' + '__' + key)\n\n\n if (numerisator[key] == 'num') {\n rad = rad.replace('ATTR_NUM', 'checked')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', '')\n }\n if ((0,_utils__WEBPACK_IMPORTED_MODULE_3__.check_if_color)(key)) {\n rad = rad.replace('ATTR_NUM', '')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', 'checked')\n } else {\n rad = rad.replace('ATTR_NUM', 'disabled')\n rad = rad.replace('ATTR_CAT', 'checked')\n rad = rad.replace('ATTR_COLOR', '')\n }\n\n\n radio_container.insertAdjacentHTML('beforeend', rad)\n\n }\n radio_container.insertAdjacentHTML('beforeend', '<br>')\n\n }\n\n }\n\n };\n\n document.getElementById(\"menu_help_add_tree\").onclick = function () {\n $('#modal_help').modal('show');\n\n };\n\n\n }\n\n get_modal_template() {\n return `\n <div class=\"modal\" id=\"exampleModal\" tabindex=\"-1\">\n <div class=\"modal-dialog modal-dialog-centered modal-lg\">\n <div class=\"modal-content\">\n \n <div class=\"modal-header\" style=\"height: 128px;border:none !important\">\n <h3 class=\"modal-title\" id=\"exampleModalLabel\" style=\"margin: auto; text-align: center\">\n <b>TITLE_</b> <br>\n \n <small style=\"color:grey\">\n SUB_TITLE_\n </small>\n </h3>\n \n </div>\n \n <div class=\"modal-body\" style=\"background-color: #f8f9fa; padding: 24px 48px;\">\n \n \n TEMPLATE_CORPUS\n \n </div>\n \n \n </div>\n\n </div>\n </div>\n </div>\n`\n }\n\n open_color_settings(){\n document.getElementsByClassName('menu_settings')[0].style.display = 'block'\n document.getElementById('accordion_color' + this.container_object.uid).click()\n }\n\n\n\n // TOGGLE\n add_toggle(){\n var sub_div = this.top_left.append(\"div\")\n .style( \"display\", \"flex\")\n .style('margin', '2px')\n\n\n var butty_putty = sub_div.append('button')\n .on('click', d => {return this.container_object.shift_model(-1)})\n .attr('class', ' square_button')\n .attr('id', 'buttontoggleleft_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Load previous tree')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-chevron-left ')\n\n butty_putty.append('p')\n .text('Previous')\n .style('font-size', 'xx-small')\n\n this.tooltip_shiftleft = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttontoggleleft_' + this.container_object.div_id))\n\n\n\n var stoggle = sub_div.append('div')\n .attr('class', ' square_button screen_toggle')\n .style('min-width', '92px')\n .style('display', 'flex')\n .style('align-items', 'center')\n .style('width', 'auto')\n\n\n var sd = stoggle.append('div')\n\n\n\n\n sd.append(\"div\")\n .style('cursor', 'text')\n .attr('id', 'input_edit_name'+ this.container_object.uid)\n .attr(\"contenteditable\",\"true\")\n .attr(\"class\",\"label\")\n .style('display', 'inline')\n .text(this.viewer.model.settings.name)\n\n\n\n var ol = sd.append(\"ul\").attr('class', \"progress-indicator\" )\n .style('width', 'auto')\n .style('min-width', \"50px\")\n\n for (var i = 0; i < this.container_object.models.length; i++) {\n\n let li = ol.append('li')\n\n if (i == this.container_object.current_model){\n\n li.attr('class','completed' )\n\n }\n\n li.append('span')\n .attr('class','bubble' )\n\n }\n\n\n sub_div.append('button')\n .attr('class', 'square_button')\n .attr('id', 'button_edit_name_check'+ this.container_object.uid)\n .append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#fff')\n .attr('class', ' bi bi-check ')\n\n sub_div.append('button')\n .attr('class', 'square_button button_edit_name')\n .attr('id', 'button_edit_name_trash'+ this.container_object.uid)\n .append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#fff')\n .attr('class', ' bi bi-trash ')\n\n\n var butty_putty = sub_div.append('button')\n .attr('class', ' square_button')\n .on('click', d => { return this.container_object.shift_model(1)})\n .attr('id', 'buttonshiftright_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Load next tree')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-chevron-right ')\n\n butty_putty.append('p')\n .text('Next')\n .style('font-size', 'xx-small')\n\n this.tooltip_shiftright = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonshiftright_' + this.container_object.div_id))\n\n\n\n // bind events and action to editable div\n\n var edit_name = document.querySelector('#input_edit_name'+ this.container_object.uid);\n var edit_name_ok = document.querySelector('#button_edit_name_check'+ this.container_object.uid);\n var edit_name_trash = document.querySelector('#button_edit_name_trash'+ this.container_object.uid);\n\n edit_name.addEventListener(\"keypress\", (e) => {\n if (e.which == 13) {\n event.preventDefault();\n edit_name_ok.style.display = 'none';\n edit_name_trash.style.display = 'none';\n var old_name = this.viewer.model.get_name()\n\n var undo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [old_name]}\n var redo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [edit_name.textContent]}\n this.container_object.add_action(undo, redo, true)\n\n this.viewer.model.set_name(edit_name.textContent)\n return false;\n }\n\n\n //You can add delete key event code as well over here for windows users.\n //if(edit_name.textContent.length === 40 && e.keyCode != 8) {\n // e.preventDefault();\n //}\n });\n\n edit_name.addEventListener('focus', (event) => {\n edit_name_ok.style.display = 'inline';\n edit_name_trash.style.display = 'inline';\n });\n\n edit_name.addEventListener('blur', (event) => {\n setTimeout(() => {\n edit_name_ok.style.display = 'none';\n edit_name_trash.style.display = 'none';\n edit_name.textContent = this.viewer.model.get_name()\n }, 300);\n\n });\n\n\n edit_name_trash.addEventListener('click', (event) => {\n this.container_object.remove_current_tree(true)\n\n });\n\n edit_name_ok.addEventListener('click', (event) => {\n var old_name = this.viewer.model.get_name()\n\n var undo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [old_name]}\n var redo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [edit_name.textContent]}\n this.container_object.add_action(undo, redo, true)\n\n this.viewer.model.set_name(edit_name.textContent)\n\n });\n\n\n\n\n }\n\n add_rescale_zoom(){\n\n var butty_putty = this.bottom_right.append('button')\n .on('click', d => {\n\n this.viewer.force_zoom_rescaling = true;\n this.viewer.zoomed( {'transform':this.viewer.d3.zoomTransform(this.viewer.svg.node())});\n this.viewer.force_zoom_rescaling = false;\n })\n .attr('class', ' square_button')\n .attr('id', 'buttonscaleviewer_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Optimise text size')\n .style('margin', '2px')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-fonts ')\n\n butty_putty.append('p')\n .text('Optimise text')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n\n\n this.tooltip_fitviewer = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonscaleviewer_' + this.container_object.div_id))\n\n }\n\n add_fit_height() {\n\n var butty_putty = this.bottom_right.append('button')\n .on('click', d => {\n this.viewer.fit_to_viewer_height()\n })\n .attr('class', ' square_button')\n .attr('id', 'buttonfitviewer_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Optimise view (possible collapse/expand)')\n .style('margin', '2px')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-arrows-angle-contract ')\n\n butty_putty.append('p')\n .text('Optimise view')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n\n this.tooltip_fitviewer = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonfitviewer_' + this.container_object.div_id))\n\n }\n\n add_maximise() {\n\n var butty_putty= this.bottom_right.append('button')\n .on('click', d => {\n this.viewer.maximise_zoom()\n })\n .attr('class', ' square_button')\n .attr('id', 'button_maximise_zoom_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Fit tree into viewer (no collapse/expand)')\n .style('margin', '2px')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-arrows-fullscreen ')\n\n butty_putty.append('p')\n .text('Fit screen')\n .style('font-size', 'xx-small')\n\n this.tooltip_fitviewer = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('button_maximise_zoom_' + this.container_object.div_id))\n\n }\n\n // BADGE ROOTING\n add_root_badge() {\n\n\n\n this.bottom_left.append('button')\n .attr('class', ' square_button')\n .style('padding', '4px')\n .style('margin', '2px')\n .style('cursor', 'default')\n .style('color', 'white')\n .style('background', 'rgb(136, 136, 136)')\n .append(\"div\")\n .on('click', d => { return this.container_object.toggle_rooting()})\n .attr(\"class\", \"label\")\n .append('small')\n .html(this.viewer.model.rooted ? 'Rooted Tree <i class=\\\"bi bi-sync-alt\\\"></i>' : 'Unrooted Tree <i class=\\\"bi bi-sync-alt\\\"></i> ')\n }\n\n // ZOOM\n add_zoom(){\n\n var butty_putty =this.bottom_right.append('button')\n .on('click', d => {return this.viewer.zoom_in()})\n .attr('class', ' square_button')\n .attr('id', 'buttonzoomplus_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Zoom in')\n .style('margin', '2px')\n\n\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-zoom-in ')\n\n butty_putty.append('p')\n .text('Zoom in')\n .style('font-size', 'xx-small')\n\n this.tooltip_zoomplus = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonzoomplus_' + this.container_object.div_id))\n\n\n var butty_putty = this.bottom_right.append('button')\n .on('click', d => {return this.viewer.zoom_out()})\n .attr('class', ' square_button')\n .style('margin', '2px')\n .attr('id', 'buttonzoomminus_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Zoom out')\n\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-zoom-out ')\n\n butty_putty.append('p')\n .text('Zoom out')\n .style('font-size', 'xx-small')\n\n this.tooltip_zoomminus = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonzoomminus_' + this.container_object.div_id))\n\n }\n\n // SCALE\n add_scale(){\n\n var scaleLineLateralPadding = 10\n var scaleLineBottomPadding = 10\n\n\n var gg = this.viewer.svg_d3.node().append('g')\n .attr(\"class\", 'scale')\n .attr(\"transform\", \"translate(0,\" + (this.viewer.height - scaleLineBottomPadding) + \")\")\n\n gg.append(\"path\")\n .attr(\"d\", (d) => {return \"M\" + scaleLineLateralPadding + \",20L\" + (this.scale_pixel_length) + \",20\"})\n .attr(\"class\", 'scale_line')\n\n\n var scale_text = gg.append(\"text\")\n .attr(\"class\", 'scale_text')\n .attr(\"x\", this.scale_pixel_length/2)\n .attr(\"y\", 10)\n .attr(\"fill\", \"#555\")\n .attr('text-anchor', 'middle')\n .attr(\"dy\", \".2em\")\n .text(d => {return this.compute_scale()})\n\n\n return scale_text\n\n\n\n }\n remove_scale(){this.container_d3.select(\".scale\").remove()}\n\n update_scale_value(zoom_scale){\n this.scale_text.text(this.compute_scale(zoom_scale))\n\n }\n\n compute_scale(zoom_scale){\n var zoom_scale = zoom_scale || 1;\n return (this.viewer.scale_branch_length.invert(this.scale_pixel_length)/zoom_scale).toFixed(4);\n }\n\n //COLORING\n add_color_legend(type){\n\n\n var type = (typeof type !== 'undefined') && (type != 'both') ? type : 'node';\n\n var tt = this.viewer.model.settings.extended_data_type[this.viewer.model.settings.style.color_accessor[type]]\n var acc = this.viewer.model.settings.style.color_accessor[type];\n\n if ( tt === 'cat' || tt === 'color'){return}\n\n this.container_d3.select(\".colorlegend_\" + type).remove()\n\n let top_padding = 16;\n let left_padding = 16;\n let width = 16;\n let height = 100;\n let gutter = 8;\n let rect_height = height/100;\n\n var offset = type == 'node' ? (this.viewer.height/2) + 30 : type == 'leaf' ? this.viewer.height/2-height - 10 : this.viewer.height/2 - 2*height - 40;\n\n let gg = this.viewer.svg_d3.node().append('g')\n .attr(\"class\", 'colorlegend_' + type)\n\n\n var values = []\n\n if (this.viewer.model.settings.intercolor[type]) {\n for (let i = 0; i < 100; i++) {\n let n = this.viewer.model.settings.intercolor[type]((i / 100).toFixed(2));\n values.push(this.viewer.model.settings.colorScale[type](n));\n }\n }\n\n gg.selectAll(\"rect\")\n .data(values)\n .join(\"rect\")\n .attr(\"x\", left_padding)\n .attr(\"y\", (d, i) => offset + i)\n .attr(\"width\", width)\n .attr(\"height\", rect_height)\n .attr(\"fill\", d => d);\n\n gg.append(\"text\")\n .attr(\"x\", left_padding + width + gutter )\n .attr(\"y\", offset - 6 )\n .attr(\"fill\", \"#555\")\n .attr('text-anchor', 'start')\n .attr(\"dy\", \".2em\")\n .text(() => {\n var ms = this.viewer.model.settings.style;\n\n if (ms.color_accessor[type]){\n var n = ms.color_extent_max[type][ms.color_accessor[type]];\n return Number.isInteger(n) ? n : parseFloat(n).toFixed(3);\n\n }\n return 1\n })\n\n gg.append(\"text\")\n .attr(\"x\", left_padding + width + gutter )\n .attr(\"y\", offset + height + 10 )\n .attr(\"fill\", \"#555\")\n .attr('text-anchor', 'start')\n .attr(\"dy\", \".2em\")\n .text(() => {\n var ms = this.viewer.model.settings.style;\n\n if (ms.color_accessor[type]){\n\n var n;\n\n if (ms.color_extent_max[type][ms.color_accessor[type]] == ms.color_extent_min[type][ms.color_accessor[type]]){\n n = ms.color_extent_min[type][ms.color_accessor[type]]-1;\n }else{\n n = ms.color_extent_min[type][ms.color_accessor[type]];\n }\n\n\n return Number.isInteger(n) ? n : parseFloat(n).toFixed(3);\n\n }\n return 0\n })\n\n\n var xx = gutter\n var yy = offset\n\n yy += type == 'node' ? 5 : height;\n\n gg.append(\"text\")\n .attr(\"fill\", \"#555\")\n .attr('transform', \"translate(\"+xx+\", \" +yy+ \")rotate(-90)\")\n .attr('text-anchor', () => {return type == 'node' ? 'end' : 'start'})\n .attr(\"dy\", \".2em\")\n .text(() => {\n var ms = this.viewer.model.settings.style;\n return ms.color_accessor[type] ? ms.color_accessor[type] : \"Topology\"\n\n\n })\n\n }\n\n remove_color_legend(type){\n type = type == 'both' ? 'node' : type\n this.container_d3.select(\".colorlegend_\" + type).remove()\n }\n\n remove_all_color_legend(){\n this.container_d3.selectAll(\".colorlegend_node\").remove()\n this.container_d3.selectAll(\".colorlegend_leaf\").remove()\n this.container_d3.selectAll(\".colorlegend_circle\").remove()\n }\n\n // SEARCH\n\n autocomplete(inp, arr) {\n\n var that = this\n\n\n /*the autocomplete function takes two arguments,\n the text field element and an array of possible autocompleted values:*/\n var currentFocus;\n /*execute a function when someone writes in the text field:*/\n\n inp.addEventListener(\"input\", function(e) {\n\n\n\n var a, b, i, val = this.value;\n /*close any already open lists of autocompleted values*/\n closeAllLists();\n if (!val) { return false;}\n currentFocus = -1;\n /*create a DIV element that will contain the items (values):*/\n a = document.createElement(\"DIV\");\n a.setAttribute(\"id\", this.id + \"autocomplete-list\");\n a.setAttribute(\"class\", \"autocomplete-items\");\n /*append the DIV element as a child of the autocomplete container:*/\n this.parentNode.appendChild(a);\n /*for each item in the array...*/\n for (i = 0; i < arr.length; i++) {\n if (arr[i].toUpperCase().includes(val.toUpperCase()) ){\n //if (arr[i].substr(0, val.length).toUpperCase() === val.toUpperCase()) {\n /*create a DIV element for each matching element:*/\n b = document.createElement(\"DIV\");\n /*make the matching letters bold:*/\n var start_index = arr[i].toUpperCase().indexOf(val.toUpperCase())\n b.innerHTML += arr[i].substr(0, start_index);\n b.innerHTML += \"<strong>\" + arr[i].substr(start_index, val.length) + \"</strong>\";\n b.innerHTML += arr[i].substr(start_index + val.length);\n /*insert a input field that will hold the current array item's value:*/\n b.innerHTML += \"<input type='hidden' value='\" + arr[i] + \"'>\";\n /*execute a function when someone clicks on the item value (DIV element):*/\n b.addEventListener(\"click\", function(e) {\n /*insert the value for the autocomplete text field:*/\n that.dismiss_blur = true\n inp.value = this.getElementsByTagName(\"input\")[0].value;\n\n //document.getElementById('buttonsearch_' + this.container_object.div_id ).focus();\n that.container_object.highlight_node(inp.value)\n\n //that.viewer.maximise_zoom()\n\n /*close the list of autocompleted values,\n (or any other open lists of autocompleted values:*/\n closeAllLists();\n });\n a.appendChild(b);\n }\n }\n });\n /*execute a function presses a key on the keyboard:*/\n inp.addEventListener(\"keydown\", function(e) {\n var x = document.getElementById(this.id + \"autocomplete-list\");\n if (x) x = x.getElementsByTagName(\"div\");\n if (e.keyCode == 40) {\n /*If the arrow DOWN key is pressed,\n increase the currentFocus variable:*/\n currentFocus++;\n /*and and make the current item more visible:*/\n addActive(x);\n } else if (e.keyCode == 38) { //up\n /*If the arrow UP key is pressed,\n decrease the currentFocus variable:*/\n currentFocus--;\n /*and and make the current item more visible:*/\n addActive(x);\n } else if (e.keyCode == 13) {\n /*If the ENTER key is pressed, prevent the form from being submitted,*/\n e.preventDefault();\n if (currentFocus > -1) {\n /*and simulate a click on the \"active\" item:*/\n if (x) x[currentFocus].click();\n }\n }\n });\n function addActive(x) {\n /*a function to classify an item as \"active\":*/\n if (!x) return false;\n /*start by removing the \"active\" class on all items:*/\n removeActive(x);\n if (currentFocus >= x.length) currentFocus = 0;\n if (currentFocus < 0) currentFocus = (x.length - 1);\n /*add class \"autocomplete-active\":*/\n x[currentFocus].classList.add(\"autocomplete-active\");\n }\n function removeActive(x) {\n /*a function to remove the \"active\" class from all autocomplete items:*/\n for (var i = 0; i < x.length; i++) {\n x[i].classList.remove(\"autocomplete-active\");\n }\n }\n function closeAllLists(elmnt) {\n /*close all autocomplete lists in the document,\n except the one passed as an argument:*/\n var x = document.getElementsByClassName(\"autocomplete-items\");\n for (var i = 0; i < x.length; i++) {\n if (elmnt != x[i] && elmnt != inp) {\n x[i].parentNode.removeChild(x[i]);\n }\n }\n }\n /*execute a function when someone clicks in the document:*/\n document.addEventListener(\"click\", function (e) {\n closeAllLists(e.target);\n });\n\n\n }\n\n add_search(){\n\n\n this.container_d3.selectAll(\"#searchinp\" + this.viewer.uid).remove()\n\n // add input\n this.search_input = this.tr_buttons.append('input')\n .attr('class', ' search_input')\n .style('display', 'none')\n .style('height', '56px')\n .attr('id', \"searchinp\" + this.viewer.uid )\n\n var input_el = document.getElementById(\"searchinp\" + this.viewer.uid );\n\n // add search button\n var search_but = this.tr_buttons.append('button')\n .attr('class', ' square_button search_button')\n .attr('id', 'buttonsearch_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'search for label')\n .style('border-top-left-radius', '8px')\n .style('border-bottom-left-radius', '8px')\n .style('margin', '2px')\n .on(\"click\", d => {\n var display = input_el.style.display;\n\n if (display == 'none'){\n let search_el = document.getElementById('buttonsearch_' + this.container_object.div_id );\n\n input_el.style.display = 'inline-block';\n search_el.style.borderTopLeftRadius = '0px';\n search_el.style.borderBottomLeftRadius = '0px';\n }\n else{\n this.container_object.highlight_node(document.getElementById(\"searchinp\" + this.viewer.uid).value)\n //this.viewer.maximise_zoom()\n\n input_el.style.display = 'none';\n search_el.style.borderTopLeftRadius = '8px';\n search_el.style.borderBottomLeftRadius = '8px';\n document.getElementById('searchinp' + this.viewer.uid + 'autocomplete-list').remove();\n }\n })\n\n\n search_but.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-search ')\n\n search_but.append('p')\n .text('Search')\n .style('font-size', 'xx-small')\n\n this.tooltip_search = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonsearch_' + this.container_object.div_id))\n\n\n\n let search_el = document.getElementById('buttonsearch_' + this.container_object.div_id );\n\n this.autocomplete(document.getElementById(\"searchinp\" + this.viewer.uid ), this.viewer.model.settings.suggestions)\n\n input_el.addEventListener(\"keyup\", ({key}) => {\n if (key === \"Enter\") {\n this.container_object.highlight_node(document.getElementById(\"searchinp\" + this.viewer.uid).value)\n //this.viewer.maximise_zoom()\n }\n })\n\n input_el.addEventListener(\"blur\", (e) => {\n\n setTimeout(() => {\n\n if (this.dismiss_blur){\n this.dismiss_blur = false\n\n }\n else{\n input_el.style.display = 'none';\n search_el.style.borderTopLeftRadius = '8px';\n search_el.style.borderBottomLeftRadius = '8px';\n document.getElementById('searchinp' + this.viewer.uid + 'autocomplete-list').remove();\n\n }\n }, 200);\n\n })\n\n\n }\n\n // META\n get_modal_meta_corpus(){\n return `\n\n <div class=\"container-fluid\">\n \n <div class=\"card\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 3.1: Select your mapping file</b> </h5>\n \n\n <div class=\"input-group mb-3\" style=\"padding: 24px 24px 0;\">\n <input class=\"form-control\" type=\"file\" id=\"add_meta_file_input\" > \n </div>\n \n <p style=\"padding: 0 24px;\"><small>\n <b>Accepted format:</b> .csv or .tsv with column names in the first row. Use the selector below to choose a reference column matching leaf or node names in the input file.\n </small></p>\n \n <div class=\"text-center\" style=\"margin-left: 48px;margin-right: 48px;\">\n \n <div class=\"form-floating\">\n <select class=\"form-select\" id=\"add_mapping_ref_select\" aria-label=\"Floating label select example\">\n <option value=\"id\" selected>id</option>\n </select>\n <label for=\"add_mapping_ref_select\">Select reference column name</label>\n </div>\n \n \n </div>\n \n \n\n </div>\n \n </div>\n\n <br>\n \n <div class=\"card\" id=\"mod_meta_card2\" style=\"display: none\">\n \n <div class=\"card-body\" id=\"mod_meta_card2_radio\" >\n \n <h5> <b>Step 3.2: Configure mapping data types</b> </h5>\n \n \n \n </div>\n \n </div>\n \n <br>\n \n <div class=\"card\" id=\"mod_meta_card3\" style=\"display: none\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 3.2: Choose a target for additional data</b> </h5>\n \n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"mapping_check_leaf\" checked>\n <label class=\"form-check-label\" for=\"flexCheckDefault\">\n Apply to leaves\n </label>\n </div>\n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"mapping_check_nodes\" checked>\n <label class=\"form-check-label\" for=\"flexCheckChecked\">\n Apply to Nodes\n </label>\n \n \n \n \n </div>\n \n <br>\n \n <h5> <b>Optional</b> </h5>\n \n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"mapping_apply_to_all\">\n <label class=\"form-check-label\" for=\"flexCheckDefault\">\n Apply to all trees\n </label>\n </div>\n \n\n </div>\n \n </div>\n \n <br>\n \n <div style=\"margin: auto; width: fit-content;\">\n \n <button type=\"button\" id=\"upload_mapping_close\" class=\"btn btn-danger\" data-bs-dismiss=\"modal\">Cancel</button>\n <button type=\"button\" id=\"upload_mapping_validation\" class=\"btn btn-success\" data-bs-dismiss=\"modal\" disabled >Upload mapping file</button>\n</div>\n \n \n \n </div>\n \n `\n }\n\n add_meta(){\n\n let mod_html = this.get_modal_template()\n\n\n mod_html = mod_html.replace('TEMPLATE_CORPUS', this.get_modal_meta_corpus())\n mod_html = mod_html.replace('TITLE_', 'Upload your own mapping file')\n mod_html = mod_html.replace('SUB_TITLE_', 'to add additional information to leaves and nodes')\n\n mod_html = mod_html.replace('exampleModal', 'modal_meta_' + this.container_object.uid)\n mod_html = mod_html.replaceAll('add_meta_file_input', 'modal_add_mapping_file_input' + this.container_object.uid)\n\n mod_html = mod_html.replace('mod_meta_card2', 'mod_meta_card2_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card3', 'mod_meta_card3_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card2_radio', 'mod_meta_card2_radio' + this.container_object.uid)\n\n mod_html = mod_html.replace('flexCheckChecked', 'flexCheckChecked' + this.container_object.uid)\n mod_html = mod_html.replace('flexCheckDefault', 'flexCheckDefault' + this.container_object.uid)\n\n mod_html = mod_html.replace('upload_mapping_validation', 'upload_mapping_validation' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_check_nodes', 'mapping_check_nodes' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_check_leaf', 'mapping_check_leaf' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_apply_to_all', 'mapping_apply_to_all' + this.container_object.uid)\n\n\n mod_html = mod_html.replaceAll('add_mapping_ref_select', 'add_mapping_ref_select_modal' + this.container_object.uid)\n\n mod_html = mod_html.replaceAll('Step 3.1', 'Step 1')\n mod_html = mod_html.replaceAll('Step 3.2', 'Step 2')\n\n document.getElementById(this.container_object.div_id).insertAdjacentHTML('afterend',mod_html)\n\n // Add JS for modal corpus\n var that = this\n\n document.getElementById('modal_add_mapping_file_input' + this.container_object.uid).onchange = function() {\n\n let input = this.files[0];\n\n if (input) {\n\n document.getElementById('mod_meta_card2_' + that.container_object.uid).style.display = 'block'\n document.getElementById('mod_meta_card3_' + that.container_object.uid).style.display = 'block'\n document.getElementById('upload_mapping_validation' + that.container_object.uid).disabled = false;\n\n\n var reader = new FileReader();\n var data;\n\n reader.addEventListener(\"load\", parseFile, false);\n reader.readAsText(input);\n function parseFile(){\n\n // load data\n if (input.name.split('.').pop() == 'tsv'){\n data = d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(reader.result, function(d){\n return d;\n });\n }\n else{\n\n data = d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(reader.result, function(d){\n return d;\n });\n\n }\n\n\n // Get columns + types\n var numerisator = {}\n numerisator['id'] = 'cat'\n data['columns'].forEach((currentElement) => { if (currentElement != 'id'){ numerisator[currentElement] = 'num'}})\n data.forEach((currentElement) => {\n for (var key of Object.keys(numerisator)) {\n if (isNaN(currentElement[key])){\n numerisator[key] = 'cat'\n }\n }\n })\n\n // Add columns to select\n var select = document.getElementById('add_mapping_ref_select_modal' + that.container_object.uid)\n select.innerHTML = ''\n for (var key of Object.keys(numerisator)){\n var opt = document.createElement('option');\n opt.value = key;\n opt.innerHTML = key;\n select.appendChild(opt);\n }\n\n\n\n // creates radios\n var radio_container = document.getElementById( 'mod_meta_card2_radio' + that.container_object.uid)\n radio_container.innerHTML = ''\n\n var get_el = function(){return `\n \n <div style = \"padding: 12px 24px 0;\"> <span><b style = \"margin-right: 12px\" > Column: </b> \"NAME_\"</span> <br>\n\n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input \" name=\"flexRadioDefault\" type=\"radio\" value=\"num\" id=\"RADIO_1\" ATTR_NUM>\n <label class=\"form-check-label\" for=\"RADIO_1\">\n Numerical\n </label>\n </div>\n \n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"cat\" id=\"RADIO_2\" ATTR_CAT>\n <label class=\"form-check-label\" for=\"RADIO_2\">\n Categorical\n </label>\n </div>\n \n <div class=\"form-check\" style=\"margin-left: 24px\">\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"color\" id=\"RADIO_3\" ATTR_COLOR>\n <label class=\"form-check-label\" for=\"RADIO_3\">\n Color\n </label>\n </div>\n \n \n \n \n \n \n \n </div>\n `}\n\n for (var key of Object.keys(numerisator)){\n\n var rad = get_el()\n\n\n rad = rad.replace('NAME_', key)\n rad = rad.replaceAll('flexRadioDefault', 'flexRadioDefault_' + key + that.container_object.uid )\n rad = rad.replace('RADIO_1', that.container_object.uid + 'mapping_header_radio1' + '__' + key )\n rad = rad.replace('RADIO_2', that.container_object.uid + 'mapping_header_radio2' + '__' + key )\n rad = rad.replace('RADIO_3', that.container_object.uid + 'mapping_header_radio3' + '__' + key )\n\n\n if (numerisator[key] == 'num') {\n rad = rad.replace('ATTR_NUM', 'checked')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', '')\n }\n if ((0,_utils__WEBPACK_IMPORTED_MODULE_3__.check_if_color)(numerisator[key])) {\n rad = rad.replace('ATTR_NUM', '')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', 'checked')\n }\n else {\n rad = rad.replace('ATTR_NUM', 'disabled')\n rad = rad.replace('ATTR_CAT', 'checked')\n rad = rad.replace('ATTR_COLOR', '')\n }\n\n\n\n radio_container.insertAdjacentHTML('beforeend',rad)\n\n }\n radio_container.insertAdjacentHTML('beforeend','<br>')\n\n }\n\n }\n\n else {\n document.getElementById('upload_mapping_validation' + that.container_object.uid).disabled = true;\n }\n };\n\n document.getElementById('upload_mapping_validation' + this.container_object.uid).onclick = function(){\n\n\n var file = document.getElementById('modal_add_mapping_file_input' + that.container_object.uid).files[0];\n\n if (file) {\n\n var parameters = that.get_mapping_parameter_from_UI()\n\n const reader = new FileReader();\n\n reader.addEventListener('load', (event) => {\n\n var meta = []\n var ref_id = parameters.reference\n\n if (file.name.split('.').pop() == 'tsv'){\n d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(event.target.result, (d) => {meta[d[ref_id]] = d});\n }\n else{\n d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(event.target.result, (d) => {meta[d[ref_id]] = d});\n }\n\n\n\n if (parameters.apply_to_all){\n // apply add_meta_leaves to all models in the container\n that.container_object.models.forEach((model) => {\n\n model.settings.use_meta_for_leaf = parameters.use_meta_for_leaf\n model.settings.use_meta_for_node = parameters.use_meta_for_node\n\n if (parameters.use_meta_for_leaf){\n model.add_meta_leaves(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n if (parameters.use_meta_for_node){\n model.add_meta_nodes(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n\n\n })\n\n }\n else {\n\n that.viewer.model.settings.use_meta_for_leaf = parameters.use_meta_for_leaf\n that.viewer.model.settings.use_meta_for_node = parameters.use_meta_for_node\n\n if (that.viewer.model.settings.use_meta_for_leaf){\n that.viewer.model.add_meta_leaves(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n\n if (that.viewer.model.settings.use_meta_for_node){\n that.viewer.model.add_meta_nodes(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n\n\n }\n\n that.viewer.interface = new Interface(that.viewer, that.viewer.container_object)\n\n that.open_color_settings()\n\n });\n reader.readAsText(file);\n\n }\n\n\n }\n\n\n // add the button\n var ex_b = this.tr_buttons.append('button')\n .attr('id', 'button_meta' + this.container_object.uid)\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Add additional informations to the tree')\n .attr('data-bs-toggle', 'modal')\n .attr('data-bs-target', '#modal_meta_' + this.container_object.uid )\n\n var divybuty = ex_b.attr('class', ' square_button')\n .style('margin', '2px')\n\n divybuty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi bi-file-earmark-medical')\n\n divybuty.append('p')\n .text('Mapping')\n .style('font-size', 'xx-small')\n\n\n }\n\n get_mapping_parameter_from_UI(modal){\n\n var modal = (typeof modal == 'undefined') ? false : modal;\n\n var p = {'headers': {}}\n\n if (modal){\n var prefix = this.container_object.uid + 'mapping_header_radiotree_adder_'\n }\n else{\n var prefix = this.container_object.uid + 'mapping_header_radio'\n }\n\n var checkies = document.querySelectorAll(`[id^=\"${prefix}\"]`);\n\n\n\n checkies.forEach(element => {\n\n if (element.checked) {\n var column_type = element.value\n var column_name = element.id.split('__').pop()\n\n\n p['headers'][column_name] = column_type\n }\n\n\n });\n\n if (modal){\n p['use_meta_for_node'] = document.getElementById( 'tree_adder_mapping_check_nodes' + this.container_object.uid).checked\n p['use_meta_for_leaf'] = document.getElementById( 'tree_adder_mapping_check_leaf' + this.container_object.uid).checked\n p['apply_to_all'] = document.getElementById( 'tree_adder_mapping_apply_to_all' + this.container_object.uid).checked\n p['reference'] = document.getElementById( 'add_mapping_ref_select' + this.container_object.uid).value\n }\n else{\n p['use_meta_for_node'] = document.getElementById( 'mapping_check_nodes' + this.container_object.uid).checked\n p['use_meta_for_leaf'] = document.getElementById( 'mapping_check_leaf' + this.container_object.uid).checked\n p['apply_to_all'] = document.getElementById( 'mapping_apply_to_all' + this.container_object.uid).checked\n p['reference'] = document.getElementById( 'add_mapping_ref_select_modal' + this.container_object.uid).value\n }\n\n\n return p\n }\n\n // EXPORT\n add_export() {\n\n // add the button\n var ex_b = this.tr_buttons.append('button')\n .attr('id', 'button_export' + this.container_object.uid)\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Export this tree as graphic or text file')\n\n var divybuty = ex_b.attr('class', ' square_button')\n .style('margin', '2px')\n .on(\"click\", d => {\n if (this.menu_export.style('display') === 'none') {\n this.menu_settings.style(\"display\", 'none') // make it more general to all menu/button\n ex_b.style('background-color', '#CCC');\n document.getElementById(\"button_settings\" + this.container_object.uid).style.backgroundColor = 'rgba(239, 239, 239, 0.95)';\n return this.menu_export.style(\"display\", 'block')\n }\n ex_b.style('background-color', 'rgba(239, 239, 239, 0.95)');\n return this.menu_export.style(\"display\", 'none')\n })\n\n divybuty.append(\"div\")\n .attr(\"class\", \"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi-file-earmark-arrow-up')\n\n divybuty.append('p')\n .text('Download')\n .style('font-size', 'xx-small')\n\n\n this.tooltip_export = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('button_export' + this.container_object.uid))\n\n\n // add the sub menu container\n this.menu_export = this.tr_menus.append('div')\n .style(\"background-color\", '#aaa')\n .attr('class', 'menu_export')\n\n\n // ADD THE ACCORDION SYSTEM\n\n this.menu_exportimage_b = this.menu_export.append('button').attr('class', 'accordion').text(\"Export as Graphic\")\n this.menu_exportimage_p = this.menu_export.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"6px\")\n\n this.export_as = this.menu_exportimage_p.append('div')\n .style('display', 'flex')\n\n this.export_as.append('button') // todo clean click\n .attr('class', ' square_button')\n .on(\"click\", d => {\n this.screen_shot('png')\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"PNG\")\n\n\n this.export_as.append('button')\n .attr('class', ' square_button')\n .on(\"click\", d => { // todo clean\n this.screen_shot('svg')\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"SVG\")\n\n\n this.menu_exportfile_b = this.menu_export.append('button').attr('class', 'accordion').text(\"Export as Text\")\n this.menu_exportfile_p = this.menu_export.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"6px\")\n\n this.export_as = this.menu_exportfile_p.append('div')\n .style('display', 'flex')\n\n this.export_as.append('button')\n .attr('class', ' square_button')\n .on(\"click\", d => {\n this.container_object.export_as_newick()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Newick\")\n\n this.export_as.append('button')\n .attr('class', ' square_button')\n .on(\"click\", d => {\n this.container_object.export_as_nhx()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"NHX\")\n\n }\n\n screen_shot(format) {\n\n var svg = this.viewer.d3.select(\"#svg\" + this.viewer.uid)\n this.addLogo(svg);\n var name = svg.attr(\"id\");\n var svgString = this.getSVGString(svg.node());\n\n if(format === 'svg') {\n\n var blob = new Blob([svgString], {\"type\": \"image/svg+xml;base64,\"+ btoa(svgString)});\n file_saver__WEBPACK_IMPORTED_MODULE_0__.saveAs(blob, name+\".svg\");\n svg.select(\"#exportLogo\").remove();\n\n }\n else if (format === 'png'){\n var exportElement = svg.node();\n var width = exportElement.getBoundingClientRect().width;\n var height = exportElement.getBoundingClientRect().height;\n this.svgString2Image(svgString, 2 * width, 2 * height, 'png', save);\n svg.select(\"#exportLogo\").remove();\n\n function save(dataBlob, filesize) {\n var filename = (name) ? name+\".\" : \"\";\n file_saver__WEBPACK_IMPORTED_MODULE_0__.saveAs(dataBlob, filename+'phylo.io.png'); // FileSaver.js function\n }\n\n }\n\n }\n\n // UNDO\n add_undo(){\n\n var divybuty = this.tr_buttons.append('button')\n .attr('class', ' square_button')\n .attr('id', 'buttonundo_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', d=> { return this.container_object.history_actions.length > 0 ? 'Undo ' + this.container_object.get_last_action().name : 'Nothing to undo' })\n .style('margin', '2px')\n .on(\"click\", d => {\n this.api.undoing = true;\n var cta = this.container_object.pop_last_action();\n cta = cta.undo\n if (cta && typeof cta.fonct === 'function') {\n cta.fonct.apply(cta.fonction_obj, cta.argu);\n\n if (cta.refresh_interface) {\n let empty = this.container_object.models.length <= 0;\n this.container_object.interface = new Interface(this.viewer, this.container_object, empty);\n }\n } else {\n console.error('Invalid cta or cta.fonct:', cta);\n }\n this.api.undoing = false;\n })\n\n\n\n\n\n divybuty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi-arrow-counterclockwise')\n\n divybuty.append('p')\n .text('Undo')\n .style('font-size', 'xx-small')\n\n this.tooltip_undo = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonundo_' + this.container_object.div_id))\n\n }\n\n add_redo(){\n\n var divybuty = this.tr_buttons.append('button')\n .attr('class', ' square_button')\n .attr('id', 'buttonredo_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', d=> { return this.container_object.history_actions.length > 0 ? 'Redo ' + this.container_object.get_last_action().redo.name : 'Nothing to redo' })\n .style('margin', '2px')\n .on(\"click\", d => {\n var cta = this.container_object.pop_redo_action();\n cta = cta.redo\n if (cta && typeof cta.fonct === 'function') {\n cta.fonct.apply(cta.fonction_obj, cta.argu);\n\n if (cta.refresh_interface) {\n let empty = this.container_object.models.length <= 0;\n this.container_object.interface = new Interface(this.viewer, this.container_object, empty);\n }\n } else {\n console.error('Invalid cta or cta.fonct:', cta);\n }\n })\n\n divybuty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi-arrow-clockwise')\n\n divybuty.append('p')\n .text('Redo')\n .style('font-size', 'xx-small')\n\n this.tooltip_undo = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonredo_' + this.container_object.div_id))\n\n }\n\n toggle_select_node_face(cid){\n\n var acc = document.getElementById(\"accordion_branch\"+cid)\n\n\n if (acc.classList.contains('active')) {\n\n document.getElementById('selectlt' + cid).style.display = 'block';\n document.getElementById('selectlb' + cid).style.display = 'block';\n document.getElementById('selectr' + cid).style.display = 'block';\n\n document.getElementById('selectlt' + cid).style.top = -90 + 'px';\n document.getElementById('selectlb' + cid).style.top = -40 + 'px';\n document.getElementById('selectr' + cid).style.top = -60 + 'px';\n\n document.getElementById('selectlt' + cid).style.left = '30px';\n document.getElementById('selectlb' + cid).style.left = '30px';\n document.getElementById('selectr' + cid).style.left = '130px';\n\n }\n else{\n document.getElementById('selectlt' + cid).style.display = 'none';\n document.getElementById('selectlb' + cid).style.display = 'none';\n document.getElementById('selectr' + cid).style.display = 'none';\n }\n }\n\n // SETTINGS\n add_settings() {\n\n // add the buttons\n var set_b = this.tr_buttons.append('button')\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Viewer settings')\n\n set_b.attr('class', ' square_button')\n set_b.attr('id', 'button_settings' + this.container_object.uid)\n .style('margin', '2px')\n .on(\"click\", d => {\n if (this.menu_settings.style('display') === 'none') { //make it as funtion\n this.menu_export.style(\"display\", 'none')\n set_b.style('background-color', '#CCC');\n document.getElementById(\"button_export\" + this.container_object.uid).style.backgroundColor = 'rgba(239, 239, 239, 0.95)';\n return this.menu_settings.style(\"display\", 'block')\n }\n set_b.style('background-color', 'rgba(239, 239, 239, 0.95)');\n return this.menu_settings.style(\"display\", 'none')\n })\n\n set_b.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi bi-sliders')\n\n set_b.append('p')\n .text('Settings')\n .style('font-size', 'xx-small')\n\n\n\n this.tooltip_settings = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('button_settings' + this.container_object.uid))\n\n\n // add the menu\n this.menu_settings = this.tr_menus.append('div')\n .attr('class', 'menu_settings')\n\n\n // ADD THE ACCORDION SYSTEM todo close other when open one\n\n this.menu_general_b = this.menu_settings.append('button').attr('id', 'accordion_tree'+this.container_object.uid).attr('class', 'accordion').text(\"Tree\")\n this.menu_general_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n this.menu_tree_b = this.menu_settings.append('button').attr('id', 'accordion_branch'+this.container_object.uid).attr('class', 'accordion').text(\"Branches & Labels\")\n this.menu_tree_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n\n //this.menu_metadata_b = this.menu_settings.append('button').attr('id', 'accordion_color'+this.container_object.uid).attr('class', 'accordion').text(\"Additional Information\")\n //this.menu_metadata_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n this.menu_coloring_b = this.menu_settings.append('button').attr('id', 'accordion_color'+this.container_object.uid).attr('class', 'accordion').text(\"Coloring\")\n this.menu_coloring_panel = this.menu_settings.append('div').attr('class', 'panel').attr('id', 'coloring_panel' + this.container_object.uid)\n this.menu_coloring_p = this.menu_coloring_panel.append(\"div\").style(\"padding\", \"14px\").attr('id', 'coloring_p' + this.container_object.uid)\n\n this.menu_search_b = this.menu_settings.append('button').attr('id', 'accordion_branch'+this.container_object.uid).attr('class', 'accordion').text(\"Search options\")\n this.menu_search_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n if (this.viewer.model.settings.has_histogram_data && this.viewer.model.settings.show_histogram ) {\n this.menu_stack_b = this.menu_settings.append('button').attr('class', 'accordion').text(\"Bar Graph\")\n this.menu_stack_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n\n\n this.slider_sts = this.add_slider_UI(this.menu_stack_p, \"Bar height\", 40, 300, this.viewer.model.settings.stack.stackHeight, 5, \"slider_stack_height_\",\n (e ) =>{this.viewer.update_stack_height(e.target.value)})\n\n this.slider_sts = this.add_slider_UI(this.menu_stack_p, \"Bar width\", 10, 150, this.viewer.model.settings.stack.stackWidth, 5, \"slider_stack_width_\",\n (e ) =>{this.viewer.update_stack_width(e.target.value)})\n\n this.slider_sts = this.add_slider_UI(this.menu_stack_p, \"Label size\", 6, 40, this.viewer.model.settings.stack.legendTxtSize, 1, \"slider_stack_text_size_\",\n (e ) =>{this.viewer.update_stack_font(e.target.value)})\n\n this.menu_stack_p.append(\"p\").text('Labels').style('margin-bottom', \"0px\")\n\n\n this.stack_type = this.menu_stack_p.append('div')\n .style('display', 'flex')\n .style('margin-bottom', \"14px\")\n\n\n\n this.stack_type.append('button') // todo clean click\n .attr('class', ' square_button')\n .attr('id', 'stack_type_events')\n .style('background-color', d => {return this.viewer.model.settings.stack.type === 'events' ? 'rgb(204, 204, 204)': null })\n .on(\"click\", d => {\n this.viewer.update_stack_type('events')\n this.viewer. d3.select(\"#stack_type_events\").style('background-color','rgb(204, 204, 204)')\n this.viewer.d3.select(\"#stack_type_genes\").style('background-color', null)\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Events\")\n\n\n this.stack_type.append('button')\n .attr('class', ' square_button')\n .attr('id', 'stack_type_genes')\n .style('background-color', d => {return this.viewer.model.settings.stack.type === 'genes' ? 'rgb(204, 204, 204)': null })\n .on(\"click\", d => {\n this.viewer.update_stack_type('genes')\n this.viewer.d3.select(\"#stack_type_genes\").style('background-color','rgb(204, 204, 204)')\n this.viewer.d3.select(\"#stack_type_events\").style('background-color', null)\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Genes\")\n\n this.add_swicth_UI(this.menu_stack_p, (this.viewer.model.settings.stack.maxStackHeight === 'ratio'),\"Fix stack height\", this.viewer.toggle_height_max_ratio.bind(this.viewer))\n\n this.add_swicth_UI(this.menu_stack_p, this.viewer.model.settings.stack.showHistogramValues,\"Show numbers\", this.viewer.toggle_show_stack_number.bind(this.viewer))\n\n if (this.viewer.model.settings.stack.has_support){\n this.add_swicth_UI(this.menu_stack_p, this.viewer.model.settings.stack.only_support,\"remove low coverage hogs\", this.viewer.toggle_only_support.bind(this.viewer))\n\n }\n\n\n\n\n }\n\n // ADD LOGIC TO ACCORDION todo add it general or to this div only\n var acc = document.getElementById(this.container_object.div_id).getElementsByClassName(\"accordion\");\n var that = this;\n var i;\n\n for (i = 0; i < acc.length; i++) {\n acc[i].addEventListener(\"click\", function(e) {\n\n this.classList.toggle(\"active\");\n\n var panel = this.nextElementSibling;\n if (panel.style.maxHeight) {\n panel.style.maxHeight = null;\n } else {\n panel.style.maxHeight = panel.scrollHeight + \"px\";\n }\n\n //that.toggle_select_node_face(that.container_object.uid)\n\n /*\n\n var checkExist = setInterval(function() {\n\n var obs_h = panel.style.maxHeight ? panel.getBoundingClientRect().height : 0\n var exp_h = panel.style.maxHeight ? panel.scrollHeight : 0\n\n if (obs_h == exp_h ) {\n that.toggle_select_node_face(that.container_object.uid)\n clearInterval(checkExist);\n }\n\n else {\n console.log(obs_h, exp_h )\n }\n }, 200);\n\n */\n\n });\n\n\n }\n\n // ADD TOGGLE BRANCH LENGTH\n if(this.viewer.model.settings.has_branch_lenght){\n this.add_swicth_UI(this.menu_general_p, !this.viewer.model.settings.use_branch_lenght,\"Ignore branch length\", this.viewer.toggle_use_length.bind(this.viewer))\n }\n\n this.add_swicth_UI(this.menu_general_p, this.viewer.model.settings.align_tip,\"Align leaves\", this.viewer.toggle_align_tip.bind(this.viewer))\n\n this.add_swicth_UI(this.menu_general_p, this.viewer.model.settings.mirror,\"Mirror tree\", this.viewer.toggle_mirror.bind(this.viewer))\n\n // ADD SLIDER RESIZE X/Y\n /*\n this.slider_v = this.add_slider_UI(this.menu_general_p, \"Tree height\", 2, 1000, this.viewer.model.settings.tree.node_vertical_size, 1, \"slider_node_vertical_size_\",\n (e ) =>{this.viewer.modify_node_size('vertical', e.target.value - this.viewer.model.settings.tree.node_vertical_size)})\n\n this.slider_h = this.add_slider_UI(this.menu_general_p, \"Tree width\", 2, 1000, this.viewer.model.settings.tree.node_horizontal_size, 1, \"slider_node_horyzontal_size_\",\n (e ) =>{this.viewer.modify_node_size('horizontal', e.target.value - this.viewer.model.settings.tree.node_horizontal_size)})\n */\n\n\n //this.buttons_height = this.add_quartet_buttons(this.menu_general_p, \"Tree height\", \"buton_vertical_size_\", this.container_object.modify_node_size_percent, 'vertical')\n //this.buttons_width = this.add_quartet_buttons(this.menu_general_p, \"Tree width\", \"buton_horyzontal_size_\", this.container_object.modify_node_size_percent, 'horizontal')\n\n this.add_quartet_buttons_single_line(this.menu_general_p, \"Tree height\", \"buton_vertical_size_\", this.container_object.modify_node_size_percent, 'vertical')\n this.add_quartet_buttons_single_line(this.menu_general_p, \"Tree width\", \"buton_horyzontal_size_\", this.container_object.modify_node_size_percent, 'horizontal')\n\n\n // ADD SELECT LEFT NODE LABEL\n this.add_node_face_UI(this.menu_tree_p, this.container_object.uid)\n\n // ADD TOGGLE INTERNAL LABEL\n //this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_internal_label,\"Show internal label\", this.viewer.toggle_internal_label.bind(this.viewer))\n\n\n // ADD TOGGLE show internal name for triangle\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.use_internal_node_name_for_triangles,\"Show collapsed subtrees name\", this.viewer.toggle_triangle_name.bind(this.viewer))\n\n // ADD TOGGLE tooltips\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.subsample_label,\"Subsample labels\", this.viewer.toggle_subsample.bind(this.viewer))\n\n // ADD TOGGLE LEAF LABEL\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_leaves,\"Show leaf labels\", this.viewer.toggle_leaves.bind(this.viewer))\n\n // ADD TOGGLE NODE LABEL\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_leaves,\"Show node labels\", this.viewer.toggle_node_labels.bind(this.viewer))\n\n // ADD TOGGLE tooltips\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.show_tooltips,\"Show data tooltips\", this.viewer.toggle_tooltips.bind(this.viewer))\n\n if (this.viewer.model.settings.has_duplications){\n // ADD TOGGLE DUPLICATION\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_duplication,\"Show duplications\", this.viewer.toggle_duplication.bind(this.viewer))\n\n }\n\n //this.add_quartet_buttons(this.menu_tree_p, \"Node radius\", \"buton_node_radius_\", this.container_object.update_node_radius_percent )\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Node radius\", \"buton_node_radius_\", this.container_object.update_node_radius_percent)\n\n\n //this.add_quartet_buttons(this.menu_tree_p, \"Line width\", \"buton_line_width_\", this.container_object.update_line_width_percent)\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Line width\", \"buton_line_width_\", this.container_object.update_line_width_percent)\n\n\n\n // COLLAPSE\n this.slider_c = this.add_slider_UI(this.menu_general_p,\n this.viewer.model.settings.collapse_level == 0 ? \"Autocollapse: Off\" : \"Autocollapse: \" + this.viewer.model.settings.collapse_level,\n 0, this.viewer.model.settings.tree.max_depth , this.viewer.model.settings.collapse_level, 0,\"slider_collapse_level_\",)\n document.getElementById(\"slider_collapse_level_\" + this.container_object.uid).onchange = (e) => {\n\n\n this.viewer.update_collapse_level(e.target.value, false)\n var lab = e.target.value == 0 ? \"Autocollapse: Off\" : \"Autocollapse: \" + this.viewer.model.settings.collapse_level;\n\n document.getElementById(\"slider_collapse_level_\" + this.container_object.uid)\n .parentElement.previousSibling.innerHTML = lab;\n\n }\n\n\n if (this.api.settings.compareMode) {\n // equalize tree\n this.menu_general_p.append(\"p\").text('Equalize trees')\n .style('margin-bottom', '0px')\n\n\n this.equalize_div = this.menu_general_p.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.equalize_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'equ_reroot' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.reroot_to_compared_tree()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Reroot\")\n\n\n this.equalize_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'equ_reorder' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.reorder_to_compared_tree()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Reorder\")\n }\n\n\n // ADD TOGGLE MULTIPLE SEARCH\n this.add_swicth_UI(this.menu_search_p, this.viewer.model.settings.multiple_search,\"Keep queries highlighted\", this.viewer.toggle_multiple_search.bind(this.viewer))\n\n // ADD reset search button\n\n this.search_button_div = this.menu_search_p.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.search_button_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'reset_search' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.remove_highlight_node();\n this.viewer.set_data(this.container_object.models[this.container_object.current_model])\n this.viewer.render(this.viewer.hierarchy)\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Reset search\")\n\n /*\n // ADDITIONAL DATA\n var meta_div = this.menu_metadata_p.append('div')\n .style('display','block')\n //.style('margin','8px')\n\n\n meta_div.append('p').text(\"Mapping file\").style('font-weight','bold')\n\n\n meta_div.append('input')\n .attr('id','filemeta' + this.container_object.uid )\n .attr('type','file')\n .style('margin-bottom','16px')\n\n\n this.add_swicth_UI(this.menu_metadata_p, this.viewer.model.settings.use_meta_for_leaf,\"Apply to leaves\", this.viewer.toggle_use_meta_for_leaf.bind(this.viewer) )\n this.add_swicth_UI(this.menu_metadata_p, this.viewer.model.settings.use_meta_for_node,\"Apply to nodes\", this.viewer.toggle_use_meta_for_node.bind(this.viewer))\n\n\n this.meta_div = this.menu_metadata_p.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.button_meta = this.meta_div.append('button')\n .attr('id','button_add_meta' + this.container_object.uid )\n .on(\"click\", (e) => {\n\n var file = document.getElementById('filemeta' + this.container_object.uid).files[0];\n\n if (file) {\n const reader = new FileReader();\n reader.addEventListener('load', (event) => {\n\n var meta = []\n\n d3.csvParse(event.target.result, (d) => {meta[d.id] = d});\n\n if (this.viewer.model.settings.use_meta_for_leaf){\n this.viewer.model.add_meta_leaves(meta)\n }\n\n if (this.viewer.model.settings.use_meta_for_node){\n this.viewer.model.add_meta_nodes(meta)\n }\n\n this.viewer.interface = new Interface(this.viewer, this.viewer.container_object)\n\n });\n reader.readAsText(file);\n\n }\n\n\n\n })\n .attr('class', ' square_button')\n .style('border-radius', '2px')\n .style('flex-grow', '1')\n .style('background-color', '#CCC')\n .text('Use this file')\n\n\n */\n\n\n // COLORING\n\n this.add_settings_coloring()\n\n }\n\n\n add_node_coloring_UI(container_div){\n\n var that = this;\n\n container_div.append('p').text(\"Nodes\").style('font-weight','bold').style('margin-top','8px')\n\n var drop = container_div.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n\n var options = Array.from(this.viewer.model.settings.colorlabels['node'])\n options.push(\"None\")\n\n if (options.length > 0){\n\n // SELECT DATA\n\n options.unshift('None')\n\n drop.append('label').text(\"Data\");\n\n var selectcoloring = drop.append('select')\n .attr('id','selectcoloringcircle' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n that.on_change_coloring_scheme('circle', this.value)\n })\n\n selectcoloring.selectAll('option').data(options).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.style.color_accessor['circle'] })\n .text(function (d) { return d; });\n\n\n this.color_circle_div = container_div.append('div')\n\n this.minmax_circle_div = container_div.append('div')\n\n\n if (this.viewer.model.settings.style.color_accessor['circle'] !== null) {\n\n this.create_color_scheme_picker('circle')\n\n this.create_min_max_picker('circle')\n }\n\n\n\n }\n else {\n drop.style('float','right').append('label').text(\"No Data available\");\n container_div.append('br')\n\n }\n\n }\n\n add_color_collapsing(container_div) {\n\n var that = this;\n\n // Add button for collapse uncolored taxon\n this.collapse_color_button_div = container_div.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.collapse_color_button_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'collapse_color_search' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.collapse_node_not_colored()\n this.viewer.build_d3_cluster()\n this.viewer.render(this.viewer.hierarchy)\n //this.viewer.maximise_zoom()\n })\n .style('margin', '12px 0px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Collapse uncolored subtrees \")\n\n // Add select for select uncolored\n\n var color_triangle_div = container_div.append('div')\n .style('display','flex')\n .style('float', 'right')\n\n\n var options_triangle = ['Leaves', 'Nodes', 'Both'];\n\n color_triangle_div.append('label')\n .text(\"Using\")\n .style('margin-right', '8px')\n\n var selectcoloring_triangle = color_triangle_div.append('select')\n .attr('id','selectcol_uncol' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n that.viewer.model.settings.selected_collapse_uncolored = this.value;\n\n /*\n that.container_object.collapse_node_not_colored()\n that.viewer.build_d3_cluster()\n that.viewer.render(that.viewer.hierarchy)\n that.viewer.maximise_zoom()\n\n */\n\n })\n\n\n selectcoloring_triangle.selectAll('option').data(options_triangle).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.selected_collapse_uncolored })\n .text(function (d) { return d; });\n\n container_div.append('br')\n\n\n // Add button for collapse unicolored taxon\n this.collapse_unicolor_button_div = container_div.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n this.collapse_unicolor_button_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'collapse_unicolor_search' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.collapse_node_same_color()\n this.viewer.build_d3_cluster()\n this.viewer.render(this.viewer.hierarchy)\n //this.viewer.maximise_zoom()\n })\n .style('margin', '12px 0px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Collapse monocolored subtrees \")\n\n // Add select for select unicolored\n\n var color_unicolor_div = container_div.append('div')\n .style('display','flex')\n .style('float', 'right')\n\n var _options_triangle = ['Leaves', 'Nodes', 'Both'];\n\n color_unicolor_div.append('label')\n .text(\"Using\")\n .style('margin-right', '8px')\n\n var selectcoloring_mono = color_unicolor_div.append('select')\n .attr('id','selectcol_uncol' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n\n .on('change', function(){\n that.viewer.model.settings.selected_collapse_monocolored = this.value;\n /*\n that.container_object.collapse_node_same_color()\n that.viewer.build_d3_cluster()\n that.viewer.render(that.viewer.hierarchy)\n that.viewer.maximise_zoom()\n\n */\n })\n\n\n\n\n selectcoloring_mono.selectAll('option').data(_options_triangle).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.selected_collapse_monocolored })\n .text(function (d) { return d; });\n\n container_div.append('br')\n }\n\n add_settings_coloring(){\n\n var that = this;\n\n\n if (this.viewer.model.settings.sync_coloring){\n\n this.menu_coloring_p.append('p').text(\"Branches & Leaves\").style('font-weight','bold')\n\n var color_both_div = this.menu_coloring_p.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n var options_leaf = Array.from(this.viewer.model.settings.colorlabels['leaf'])\n var options_node = Array.from(this.viewer.model.settings.colorlabels['node'])\n\n var options = [...new Set( options_leaf.concat(options_node))]\n\n if (options.length > 0){\n\n // SELECT DATA\n options.unshift('None')\n color_both_div.append('label').text(\"Data\")\n\n var selectcoloring_both = color_both_div.append('select')\n .attr('id','selectcoloring_both' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n that.on_change_coloring_scheme('both', this.value)\n })\n\n selectcoloring_both.selectAll('option').data(options).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.style.color_accessor['node'] })\n .text(function (d) { return d; });\n\n\n this.color_leaf_both = this.menu_coloring_p.append('div')\n\n this.minmax_leaf_both = this.menu_coloring_p.append('div')\n\n this.create_color_scheme_picker('both')\n\n this.create_min_max_picker('both')\n\n }\n else {\n color_both_div.style('float','right').append('label').text(\"No Data available\");\n this.menu_coloring_p.append('br')\n\n }\n\n }\n\n else {\n this.menu_coloring_p.append('p').text(\"Leaf Labels\").style('font-weight','bold')\n\n var color_leaves_div = this.menu_coloring_p.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n var options = Array.from(this.viewer.model.settings.colorlabels['leaf'])\n\n\n if (options.length > 0){\n\n // SELECT DATA\n\n options.unshift('None')\n\n color_leaves_div.append('label').text(\"Data\")\n\n var selectcoloring_leaf = color_leaves_div.append('select')\n .attr('id','selectcoloring_leaf' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n that.on_change_coloring_scheme('leaf', this.value)\n\n })\n\n selectcoloring_leaf.selectAll('option').data(options).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.style.color_accessor['leaf'] })\n .text(function (d) { return d; });\n\n\n this.color_leaf_div = this.menu_coloring_p.append('div')\n\n this.minmax_leaf_div = this.menu_coloring_p.append('div')\n\n }\n else {\n color_leaves_div.style('float','right').append('label').text(\"No Data available\");\n this.menu_coloring_p.append('br')\n\n }\n\n if (this.viewer.model.settings.style.color_accessor['leaf'] !== null) {\n\n this.color_leaf_div = this.menu_coloring_p.append('div')\n\n this.minmax_leaf_div = this.menu_coloring_p.append('div')\n\n this.create_color_scheme_picker('leaf')\n\n this.create_min_max_picker('leaf')\n }\n\n\n this.menu_coloring_p.append('p').text(\"Branches\").style('font-weight','bold').style('margin-top','8px')\n\n var drop = this.menu_coloring_p.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n\n drop.append('label').text(\"Data\");\n\n var selectcoloring = drop.append('select')\n .attr('id','selectcoloring' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n that.on_change_coloring_scheme('node', this.value)\n\n })\n\n var options = Array.from(this.viewer.model.settings.colorlabels['node'])\n options.push(\"None\")\n\n if (this.viewer.model.settings.style.color_accessor['node'] !== null) {\n\n selectcoloring.selectAll('option').data(options).enter().append('option').attr('value', function (d) {\n return d;\n })\n .property(\"selected\", (d) => {\n return d == this.viewer.model.settings.style.color_accessor['node']\n })\n .text(function (d) {\n return d;\n });\n\n\n this.color_node_div = this.menu_coloring_p.append('div')\n\n this.minmax_node_div = this.menu_coloring_p.append('div')\n\n this.create_color_scheme_picker('node')\n\n this.create_min_max_picker('node')\n }\n }\n\n this.add_node_coloring_UI(this.menu_coloring_p)\n\n this.menu_coloring_p.append('hr').style('margin', '20px 0px 4px 0px')\n\n this.add_color_collapsing(this.menu_coloring_p)\n\n this.menu_coloring_p.append('hr').style('margin', '20px 0px 4px 0px')\n\n\n // add sync coloring\n this.add_swicth_UI(this.menu_coloring_p, this.viewer.model.settings.sync_coloring,\"Link branch & leaf coloring\", this.viewer.toggle_sync_coloring.bind(this.viewer))\n\n var color_triangle_div = this.menu_coloring_p.append('div')\n .style('display','block')\n //.style('margin-left','8px')\n\n var options_triangle = ['None', 'Leaves', 'Branches'];\n\n color_triangle_div.append('label').text(\"Color collapsed subtrees by\")\n\n var selectcoloring_triangle = color_triangle_div.append('select')\n .attr('id','selectcoloring_triangle' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n that.viewer.model.settings.selected_triangle_coloring = this.value;\n that.viewer.render(that.viewer.hierarchy)\n\n })\n\n selectcoloring_triangle.selectAll('option').data(options_triangle).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.selected_triangle_coloring })\n .text(function (d) { return d; });\n }\n\n on_change_coloring_scheme(type, val){\n\n if (type == 'both'){\n this.viewer.model.settings.style.color_accessor['node'] = val === 'None' ? null : val;\n this.viewer.model.settings.style.color_accessor['leaf'] = val === 'None' ? null : val;\n var acc = this.viewer.model.settings.style.color_accessor['node']\n }\n else {\n this.viewer.model.settings.style.color_accessor[type] = val === 'None' ? null : val;\n\n var acc = this.viewer.model.settings.style.color_accessor[type]\n }\n\n\n\n if (!(acc in this.viewer.model.settings.style.number_domain)) {\n this.viewer.model.settings.style.number_domain[acc] = 2\n }\n\n this.create_color_scheme_picker(type)\n\n this.create_min_max_picker(type)\n\n if (type == 'both') {\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else{\n this.viewer.model.set_color_scale(type, this.api);\n }\n this.viewer.render(this.viewer.hierarchy)\n\n\n if (type == 'both') {\n this.remove_color_legend('node');\n this.remove_color_legend('leaf');\n }\n else{\n this.remove_color_legend(type);\n }\n\n\n\n if (type == 'both' && this.viewer.model.settings.style.color_accessor['node']) {\n this.add_color_legend('node')\n }\n else if (this.viewer.model.settings.style.color_accessor[type]){\n this.add_color_legend(type);\n }\n\n this.menu_coloring_panel.style(\"max-height\", this.menu_coloring_p.style(\"height\"))\n\n\n }\n\n create_color_scheme_picker(type){\n\n var that = this;\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] : this.viewer.model.settings.style.color_accessor[type]\n\n var type_acc = this.viewer.model.settings.extended_data_type[acc]\n\n if (type == 'leaf'){\n var container_ = this.color_leaf_div\n container_.html('')\n }\n\n else if (type == 'node'){\n var container_ = this.color_node_div\n container_.html('')\n\n\n }\n\n else if (type == 'both'){\n var container_ = this.color_leaf_both\n container_.html('')\n\n }\n else if (type == 'circle'){\n var container_ = this.color_circle_div\n container_.html('')\n }\n\n if (!acc){return}\n\n if (type_acc == 'num'){\n\n var domain_leaf = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n domain_leaf.append('label').text(\"Nb. of colors\");\n\n domain_leaf.append('input')\n .attr('id','inputcoloring_' + type + this.container_object.uid )\n .attr('type','number')\n .attr('name','quantity')\n .attr('min','2')\n .attr('value', this.viewer.model.settings.style.number_domain[acc])\n .attr('max','5')\n .style('float','right')\n .on('change', (d) => {\n\n delete this.viewer.model.settings.style.color_domain[acc]\n\n this.viewer.model.settings.style.number_domain[acc] = parseInt(document.getElementById('inputcoloring_' + type + this.container_object.uid ).value);\n this.create_color_picker(type)\n if (type == 'both') {\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else{\n this.viewer.model.set_color_scale(type, this.api);\n }\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n\n })\n\n\n var colcol = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n\n colcol.append('label').text(\"Color\");\n\n colcol.append(\"span\").attr('id',type + '_colorspan_' + this.container_object.uid );\n\n this.create_color_picker(type)\n\n }\n\n else if (type_acc == 'color' ){\n container_.append('label').text(\"Use color loaded\").style('float', 'right');\n container_.append('br')\n if (type == 'both') {\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else{\n this.viewer.model.set_color_scale(type, this.api);\n }\n this.viewer.render(this.viewer.hierarchy)\n }\n\n else if (type_acc == 'cat' || typeof type_acc == 'undefined'){\n\n var color_scheme_div = container_.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n var options = Object.keys(d3_scale_chromatic__WEBPACK_IMPORTED_MODULE_4__)\n .filter(key => key.startsWith('interpolate'))\n .reduce((acc, key) => { acc[key.replace('interpolate', '')] = d3__WEBPACK_IMPORTED_MODULE_1__[key]; return acc; }, {})\n\n var options_name = Object.keys(options)\n\n\n // SELECT DATA\n color_scheme_div.append('label').text(\"Color scheme\")\n\n var selectcoloring_both = color_scheme_div.append('select')\n .attr('id','selectcoloring_scheme' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n if (type == 'both') {\n var cs = that.api.get_color_scale(that.viewer.model.settings.style.color_accessor['node']);\n cs.update_scheme(options[this.value], this.value );\n cs.update();\n that.viewer.model.set_color_scale('node', that.api);\n\n var cs = that.api.get_color_scale(that.viewer.model.settings.style.color_accessor['leaf']);\n cs.update_scheme(options[this.value], this.value );\n cs.update();\n that.viewer.model.set_color_scale('leaf', that.api);\n\n }\n else{\n var cs = that.api.get_color_scale(that.viewer.model.settings.style.color_accessor[type]);\n cs.update_scheme(options[this.value], this.value );\n cs.update();\n that.viewer.model.set_color_scale(type, that.api);\n\n }\n that.viewer.render(that.viewer.hierarchy)\n\n })\n\n var type_scheme = type == 'both' ? 'node' : type\n\n selectcoloring_both.selectAll('option').data(options_name).enter()\n .append('option')\n .attr('value', function (d) { return d })\n .property(\"selected\", (d) => { return d == this.api.get_color_scale(this.viewer.model.settings.style.color_accessor[type_scheme]).scheme_name })\n .text(function (d) { return d; });\n\n\n }\n\n else{\n container_.append('label').text(\"\");\n }\n\n\n\n\n}\n\n create_min_max_picker(type){\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] : this.viewer.model.settings.style.color_accessor[type]\n var type_acc = this.viewer.model.settings.extended_data_type[acc]\n\n\n if (type == 'leaf'){\n var container_ = this.minmax_leaf_div\n container_.html('')\n\n var val_min = this.viewer.model.settings.style.color_extent_min[type][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max[type][acc]\n }\n\n else if (type == 'node'){\n var container_ = this.minmax_node_div\n container_.html('')\n\n var val_min = this.viewer.model.settings.style.color_extent_min[type][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max[type][acc]\n }\n\n else if (type == 'circle'){\n var container_ = this.minmax_circle_div\n container_.html('')\n\n var max_ = this.viewer.model.settings.style.color_extent_max\n var min_ = this.viewer.model.settings.style.color_extent_min\n\n if (max_['circle'][acc] === undefined){\n max_['circle'][acc] = max_['node'][acc];\n }\n if (min_['circle'][acc] === undefined){\n min_['circle'][acc] = min_['node'][acc];\n }\n\n\n var val_min = this.viewer.model.settings.style.color_extent_min['circle'][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max['circle'][acc]\n\n }\n\n else if (type == 'both'){\n var container_ = this.minmax_leaf_both\n container_.html('')\n\n if (this.viewer.model.settings.style.color_extent_min['node'][acc] !=100000){\n var val_min = this.viewer.model.settings.style.color_extent_min['node'][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max['node'][acc]\n }\n else{\n var val_min = this.viewer.model.settings.style.color_extent_min['leaf'][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max['leaf'][acc]\n }\n\n\n }\n\n if (type_acc == 'num'){\n\n var min_ = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n min_.append('label').text(\"Min scale value\");\n\n min_.append('input')\n .attr('type','number')\n .attr('name','quantity')\n .attr('min','-9999999999')\n .attr('value', val_min)\n .attr('max','9999999999')\n .style('float','right')\n .on('change', (d) => {\n\n if (type == 'both'){\n this.viewer.model.settings.style.color_extent_min['leaf'][acc] = parseFloat(d.target.value)\n this.viewer.model.settings.style.color_extent_min['node'][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend('node')\n this.remove_color_legend('leaf')\n this.add_color_legend('node')\n }\n\n else {\n this.viewer.model.settings.style.color_extent_min[type][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale(type, this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n }\n\n\n })\n\n var max_ = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n max_.append('label').text(\"Max scale value\");\n\n max_.append('input')\n .attr('type','number')\n .attr('name','quantity')\n .attr('min','-9999999999')\n .attr('value', val_max)\n .attr('max','9999999999')\n .style('float','right')\n .on('change', (d) => {\n if (type == 'both'){\n this.viewer.model.settings.style.color_extent_max['node'][acc] = parseFloat(d.target.value)\n this.viewer.model.settings.style.color_extent_max['leaf'][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend('node')\n this.remove_color_legend('leaf')\n this.add_color_legend('node')\n }\n else {\n this.viewer.model.settings.style.color_extent_max[type][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale(type, this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n }\n\n })\n\n // add button to auto setup min and max from other viewer. It need to accound for compare mode and for other contrainer\n\n if (this.api.settings.compareMode){\n\n var button_ = container_.append('div')\n .style('display','flex')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n button_.append('button')\n .attr('class', ' square_button')\n .attr('id', 'auto_minmax_' + type + this.container_object.uid)\n .on(\"click\", d => {\n\n // get the other compared container using bound_container and .viewer to select wich is the one bind to current interface and not\n // the one that is compared\n\n var con1 = this.api.bound_container[0]\n var con2 = this.api.bound_container[1]\n var other_viewer = con1.viewer == this.viewer ? con2.viewer.model.settings.style : con1.viewer.model.settings.style\n\n\n if (type == 'both'){\n\n\n this.viewer.model.settings.style.color_extent_max['node'][acc] = other_viewer.color_extent_max['node'][acc]\n this.viewer.model.settings.style.color_extent_max['leaf'][acc] = other_viewer.color_extent_max['leaf'][acc]\n\n this.viewer.model.settings.style.color_extent_min['node'][acc] = other_viewer.color_extent_min['node'][acc]\n this.viewer.model.settings.style.color_extent_min['leaf'][acc] = other_viewer.color_extent_min['leaf'][acc]\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend('node')\n this.remove_color_legend('leaf')\n this.add_color_legend('node')\n\n min_.select('input').property('value', this.viewer.model.settings.style.color_extent_min['leaf'][acc])\n max_.select('input').property('value', this.viewer.model.settings.style.color_extent_max['leaf'][acc])\n\n }\n else {\n this.viewer.model.settings.style.color_extent_max[type][acc] = other_viewer.color_extent_max[type][acc]\n this.viewer.model.settings.style.color_extent_min[type][acc] = other_viewer.color_extent_min[type][acc]\n\n this.viewer.model.set_color_scale(type, this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n\n min_.select('input').property('value', this.viewer.model.settings.style.color_extent_min[type][acc])\n max_.select('input').property('value', this.viewer.model.settings.style.color_extent_max[type][acc])\n }\n\n\n\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Auto min/max\")\n\n }\n\n }\n\n\n}\n\n create_color_picker(type){\n\n var colspan = d3__WEBPACK_IMPORTED_MODULE_1__.select(\"#\" + type + '_colorspan_' + this.container_object.uid)\n\n colspan.html(\"\")\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] : this.viewer.model.settings.style.color_accessor[type]\n var number = this.viewer.model.settings.style.number_domain[acc];\n\n if (!(acc in this.viewer.model.settings.style.color_domain)) {\n //this.viewer.model.settings.style.color_domain[acc] = this.viewer.model.settings.style.color_domain_default\n var default_color = this.viewer.model.settings.style.color_domain_default[acc] || this.viewer.model.settings.style.color_domain_default[\"DEFAULT\"];\n\n var w = Math.round(135/number);\n var color = []\n\n switch (number) {\n case 2:\n color = [default_color[0], default_color[4]]\n break;\n case 3:\n color = [default_color[0],default_color[2], default_color[4]]\n break;\n case 4:\n color = [default_color[0],default_color[1],default_color[2], default_color[4]]\n break;\n case 5:\n color = default_color\n\n }\n\n this.viewer.model.settings.style.color_domain[acc] = color\n }\n else {\n var color = this.viewer.model.settings.style.color_domain[acc]\n }\n\n\n\n for (let i = 0; i < number; i++) {\n var idd = type + '_color_picker_' + this.viewer.container_object.uid + '_' + i;\n colspan.append(\"span\").style('display',' inline-block').style('float','right')\n .html(\"<input class='colpicker_\" + type + \"' type=\\\"color\\\" id=\\\"\"+idd+\"\\\" style='width:\" + w +\"px;'name=\\\"favcolor\\\" value=\\\"\" + color[i] + \"\\\">\")\n\n d3__WEBPACK_IMPORTED_MODULE_1__.select(\"#\" + idd).on('change', () => {\n\n\n this.update_color_pickers(type)\n\n if (type == 'both'){\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else {\n this.viewer.model.set_color_scale(type, this.api);\n }\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n\n\n })\n\n }\n\n }\n\n update_color_pickers(type){\n\n var colspan = d3__WEBPACK_IMPORTED_MODULE_1__.select(\"#\" + type + '_colorspan_' + this.container_object.uid)\n\n\n var new_col = []\n colspan.selectAll(\".colpicker_\" + type).each(function(d){\n new_col.push(this.value)\n })\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] :this.viewer.model.settings.style.color_accessor[type]\n\n this.viewer.model.settings.style.color_domain[acc] = new_col\n\n\n }\n\n add_swicth_UI(parent, checked, label, f){\n\n var lab = parent.append('label').style(\"display\", 'inline-block')\n .attr(\"class\",\"switch\")\n\n lab.append('input').attr('type', 'checkbox' ).property('checked', checked);\n lab.append('span').attr(\"class\",\"slider_t round\")\n .on('click', (d) => { f()} )\n\n parent.append('p').text(label).style(\"display\", 'inline-block').style(\"margin-left\", '12px')\n parent.append('br')\n\n }\n\n add_node_face_UI(parent,container_id){\n\n var w = 220;\n var h = 160;\n var gutter = 20\n\n var color_line = 'gray';\n\n var s = parent.append(\"svg\")\n .attr('display', 'block')\n .attr(\"width\", w )\n .attr(\"height\", h+ gutter)\n\n // vertical\n s.append('line')\n .attr(\"x1\", w/3)\n .attr(\"y1\", gutter)\n .attr(\"x2\", w/3)\n .attr(\"y2\", h-gutter)\n .attr(\"stroke\", color_line)\n\n // middle line\n s.append('line')\n .attr(\"x1\", gutter/2)\n .attr(\"y1\", h/2)\n .attr(\"x2\", w/3)\n .attr(\"y2\", h/2)\n .attr(\"stroke\", color_line)\n\n s.append('circle')\n .attr('cx', w/3)\n .attr('cy', h/2)\n .attr('r', 5)\n .attr('stroke', 'black')\n .attr('fill', '#69a3b2');\n\n s.append(\"text\")\n .attr(\"x\", w/3 - gutter)\n .attr(\"y\", h/2 - gutter)\n .attr(\"dy\", \".35em\")\n .text('A');\n\n s.append(\"text\")\n .attr(\"x\", w/3 + gutter)\n .attr(\"y\", h/2 )\n .attr(\"dy\", \".35em\")\n .text('B');\n\n s.append(\"text\")\n .attr(\"x\", w/3 - gutter)\n .attr(\"y\", h/2 + gutter)\n .attr(\"dy\", \".35em\")\n .text('C');\n\n\n\n // top horizontal\n s.append('line')\n .attr(\"stroke\", color_line)\n .attr(\"x1\", w/3)\n .attr(\"y1\", gutter)\n .attr(\"x2\", w-3*gutter)\n .attr(\"y2\", gutter);\n\n s.append(\"text\")\n .attr(\"x\", w-2.5*gutter)\n .attr(\"y\", gutter - 4)\n .attr(\"dy\", \".35em\")\n .text('...');\n\n // bottom horizontal\n s.append('line')\n .attr(\"stroke\", color_line)\n .attr(\"x1\", w/3)\n .attr(\"y1\", h-gutter)\n .attr(\"x2\", w-3*gutter)\n .attr(\"y2\", h-gutter);\n\n\n s.append('circle')\n .attr('cx', w-3*gutter)\n .attr('cy', h-gutter)\n .attr('r', 2)\n .attr('fill', 'black');\n\n s.append(\"text\")\n .attr(\"x\", w-2*gutter)\n .attr(\"y\", h-gutter)\n .attr(\"dy\", \".35em\")\n .text('E');\n\n s.append(\"text\")\n .attr(\"x\", w-4*gutter)\n .attr(\"y\", h-2*gutter)\n .attr(\"dy\", \".35em\")\n .text('D');\n\n s.append(\"text\")\n .attr(\"x\", w-4*gutter)\n .attr(\"y\", h)\n .attr(\"dy\", \".35em\")\n .text('F');\n\n\n\n\n // NODE DATUM\n\n parent.append(\"p\").text('Node labels')\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n\n\n var l = Array.from(this.viewer.model.settings.labels['node'])\n\n var options = [\"None\", 'Topology']\n options = options.concat(l)\n\n var that = this\n\n parent.append('text').style('display','inline').text('A').style('margin-right','4px').style('margin-left','12px')\n var selectlt = parent.append('select').attr('id','selectlt' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_internal_label_left_top = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('B').style('margin-right','4px').style('margin-left','12px')\n var selectr = parent.append('select').attr('id','selectr' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_internal_label = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('C').style('margin-right','4px').style('margin-left','12px')\n var selectlb = parent.append('select').attr('id','selectlb' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_internal_label_left_bottom = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n selectlt.selectAll('option').data(options).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectlb.selectAll('option').data(options).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectr.selectAll('option').data(options).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Font size\", \"buton_node_label_\", this.container_object.update_font_size_node_percent)\n\n\n parent.append('br')\n\n // LEAF DATUM\n\n parent.append(\"p\").text('Leaf labels')\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n\n\n var l2 = Array.from(this.viewer.model.settings.labels['leaf'])\n\n var options2 = [\"None\"]\n options2 = options2.concat(l2)\n\n var options2_name = [\"Default\"]\n options2_name = options2_name.concat(l2)\n\n var that = this\n\n parent.append('text').style('display','inline').text('D').style('margin-right','4px').style('margin-left','12px')\n var selectltl = parent.append('select').attr('id','selectltl' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_leaf_label_left_top = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('E').style('margin-right','4px').style('margin-left','12px')\n var selectrl = parent.append('select').attr('id','selectrl' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_leaf_label = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('F').style('margin-right','4px').style('margin-left','12px')\n var selectlbl = parent.append('select').attr('id','selectlbl' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_leaf_label_left_bottom = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n\n\n\n selectltl.selectAll('option').data(options2).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectlbl.selectAll('option').data(options2).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectrl.selectAll('option').data(options2_name).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Font size\", \"buton_leaf_label_size_\", this.container_object.update_font_size_leaf_percent)\n\n parent.append('br')\n\n\n function selectElement(id, valueToSelect) {\n let element = document.getElementById(id);\n element.value = valueToSelect;\n }\n\n selectElement('selectr' + container_id, this.viewer.model.settings.display_internal_label == false ? \"None\" : this.viewer.model.settings.display_internal_label )\n selectElement('selectlb' + container_id, this.viewer.model.settings.display_internal_label_left_bottom == false ? \"None\" : this.viewer.model.settings.display_internal_label_left_bottom )\n selectElement('selectlt' + container_id, this.viewer.model.settings.display_internal_label_left_top == false ? \"None\" : this.viewer.model.settings.display_internal_label_left_top )\n\n selectElement('selectrl' + container_id, this.viewer.model.settings.display_leaf_label == false ? \"Default\" : this.viewer.model.settings.display_leaf_label )\n selectElement('selectlbl' + container_id, this.viewer.model.settings.display_leaf_label_left_bottom == false ? \"None\" : this.viewer.model.settings.display_leaf_label_left_bottom )\n selectElement('selectltl' + container_id, this.viewer.model.settings.display_leaf_label_left_top == false ? \"None\" : this.viewer.model.settings.display_leaf_label_left_top )\n\n\n }\n\n add_quartet_buttons_single_line(parent, label, id, f, aux){\n\n var f = f || function(){};\n var aux = aux || null;\n\n var container = parent.append('div')\n .style('display', 'flex')\n .style('align-items', 'center');\n\n container.append(\"p\").text(label)\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n .style('font-size','small')\n .style('margin-right','8px')\n\n var buttons = container.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n .style('margin-bottom', '4px')\n\n\n var butty_putty1 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'first' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n\n butty_putty1.append('p')\n .text('- 50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n var butty_putty2 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'second' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty2.append('p')\n .text('- 20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n var butty_putty3 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'third' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n\n butty_putty3.append('p')\n .text('+ 20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n\n var butty_putty4 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'fourth' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty4.append('p')\n .text('+ 50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n return buttons\n\n\n\n }\n\n add_quartet_buttons(parent, label, id, f, aux){\n\n var f = f || function(){};\n var aux = aux || null;\n\n parent.append(\"p\").text(label)\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n\n var buttons = parent.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n .style('margin-bottom', '4px')\n\n\n var butty_putty1 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'first' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n butty_putty1.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '12px')\n .attr('class', ' bi bi-dash ')\n\n butty_putty1.append('p')\n .text('-50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n var butty_putty2 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'second' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n butty_putty2.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '8px')\n .attr('class', ' bi bi-dash ')\n\n butty_putty2.append('p')\n .text('-20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n var butty_putty3 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'third' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty3.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '8px')\n .attr('class', ' bi bi-plus ')\n\n butty_putty3.append('p')\n .text('+20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n\n var butty_putty4 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'fourth' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty4.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '12px')\n .attr('class', ' bi bi-plus ')\n\n butty_putty4.append('p')\n .text('+50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n return buttons\n\n\n\n }\n\n add_slider_UI(parent, label, min, max, current, step, id, f){\n\n var f = f || function(){};\n\n parent.append(\"p\").text(label).style('margin-bottom','0px').style('font-weight','bold')\n\n var d = parent.append('div')\n .attr(\"class\",\"slidecontainer\")\n\n var input = d.append('input').attr(\"class\",\"slider\")\n .attr('type', 'range' )\n .attr('min', min )\n .attr('max', max )\n .attr('value', current )\n //.attr('step', step )\n .attr('id', id + this.container_object.uid )\n .on('click', (e) => { f(e)} )\n .style('margin-bottom','12px')\n\n return input\n\n\n\n }\n\n update_slider(slide ,value){\n slide.attr('value', value);\n }\n\n //OLD PHYLO COPY PASTE todo clean\n // Below are the functions that handle actual exporting:\n // getSVGString ( svgNode ) and svgString2Image( svgString, width, height, format, callback )\n getSVGString( svgNode ) {\n svgNode.setAttribute('xlink', 'http://www.w3.org/1999/xlink');\n var cssStyleText = getCSSStyles( svgNode );\n appendCSS( cssStyleText, svgNode );\n\n var serializer = new XMLSerializer();\n var svgString = serializer.serializeToString(svgNode);\n svgString = svgString.replace(/(\\w+)?:?xlink=/g, 'xmlns:xlink='); // Fix root xlink without namespace\n svgString = svgString.replace(/NS\\d+:href/g, 'xlink:href'); // Safari NS namespace fix\n\n return svgString;\n\n function getCSSStyles( parentElement ) {\n var selectorTextArr = [];\n\n // Add Parent element Id and Classes to the list\n selectorTextArr.push( '#'+parentElement.id );\n for (var c = 0; c < parentElement.classList.length; c++)\n if ( !contains('.'+parentElement.classList[c], selectorTextArr) )\n selectorTextArr.push( '.'+parentElement.classList[c] );\n\n // Add Children element Ids and Classes to the list\n var nodes = parentElement.getElementsByTagName(\"*\");\n for (var i = 0; i < nodes.length; i++) {\n var id = nodes[i].id;\n if ( !contains('#'+id, selectorTextArr) )\n selectorTextArr.push( '#'+id );\n\n var classes = nodes[i].classList;\n for (var c = 0; c < classes.length; c++)\n if ( !contains('.'+classes[c], selectorTextArr) )\n selectorTextArr.push( '.'+classes[c] );\n }\n\n // Extract CSS Rules\n var extractedCSSText = \"\";\n for (var i = 0; i < document.styleSheets.length; i++) {\n var s = document.styleSheets[i];\n\n try {\n if(!s.cssRules) continue;\n } catch( e ) {\n if(e.name !== 'SecurityError') throw e; // for Firefox\n continue;\n }\n\n var cssRules = s.cssRules;\n for (var r = 0; r < cssRules.length; r++) {\n if ( contains( cssRules[r].selectorText, selectorTextArr ) )\n extractedCSSText += cssRules[r].cssText;\n }\n }\n\n\n return extractedCSSText;\n\n function contains(str,arr) {\n return arr.indexOf( str ) === -1 ? false : true;\n }\n\n }\n\n function appendCSS( cssText, element ) {\n var styleElement = document.createElement(\"style\");\n styleElement.setAttribute(\"type\",\"text/css\");\n styleElement.innerHTML = cssText;\n var refNode = element.hasChildNodes() ? element.children[0] : null;\n element.insertBefore( styleElement, refNode );\n }\n }\n\n svgString2Image( svgString, width, height, format, callback ) {\n var format = format ? format : 'png';\n\n var imgsrc = 'data:image/svg+xml;base64,'+ btoa( unescape( encodeURIComponent( svgString ) ) ); // Convert SVG string to dataurl\n\n var canvas = document.createElement(\"canvas\");\n var context = canvas.getContext(\"2d\");\n\n canvas.width = width;\n canvas.height = height;\n\n var image = new Image;\n image.onload = function() {\n\n context.clearRect ( 0, 0, width, height );\n context.fillStyle = \"#ffffff\";\n context.fillRect(0, 0, width, height);\n context.drawImage(image, 0, 0, width, height);\n\n canvas.toBlob( function(blob) {\n var filesize = Math.round( blob.length/1024 ) + ' KB';\n if ( callback ) callback( blob, filesize );\n });\n };\n image.src = imgsrc;\n }\n\n addLogo(svg) {\n // TODO load with ajax\n 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style=\"fill:#939598\" id=\"polygon461\" points=\"5.7,0.23 11.86,0.23 11.86,1.65 7.12,1.65 7.12,6.04 11.86,6.04 11.86,7.46 11.86,7.46 5.7,7.46 \" class=\"cls-2\" /> <polygon style=\"fill:#939598\" id=\"polygon463\" points=\"0,7.08 3.51,7.08 3.51,8.49 1.43,8.49 1.45,15.84 12.68,15.84 12.68,17.26 12.68,17.26 0.04,17.26 \" class=\"cls-2\" /> <polygon style=\"fill:#939598\" id=\"polygon465\" points=\"10.49,11.02 10.49,12.44 10.49,12.44 2.84,12.44 2.84,7.79 4.26,7.79 4.26,11.02 \" class=\"cls-2\" transform=\"translate(0,-0.15225398)\" /> <polygon style=\"fill:#bcbec0\" id=\"polygon467\" points=\"4.26,4.55 4.26,7.79 4.26,7.79 2.84,7.79 2.84,3.13 6.41,3.13 6.41,4.55 \" class=\"cls-3\" transform=\"matrix(1,0,0,0.85463687,0,0.4549866)\" /> <rect style=\"fill:#939598;fill-opacity:1\" id=\"rect3926-3\" width=\"1.4240631\" height=\"1.7319686\" x=\"2.8396611\" y=\"7.0799503\" /> <rect style=\"fill:#939598;fill-opacity:1\" id=\"rect3926-6\" width=\"1.3864813\" height=\"1.6934805\" x=\"5.7012329\" y=\"2.9206221\" /> </g> <g id=\"g4005\"> <g id=\"g3984\"> <polygon class=\"cls-2\" points=\"94.93,12.33 94.93,10.91 99.87,10.91 99.87,6.46 94.93,6.46 94.93,5.04 101.29,5.04 101.29,12.33 101.29,12.33 \" id=\"polygon453\" style=\"fill:#939598\" /> <polygon class=\"cls-2\" points=\"94.72,17.36 94.72,15.94 104.87,15.94 104.9,5.41 102.74,5.41 102.74,3.99 106.32,3.99 106.29,17.36 106.29,17.36 \" id=\"polygon455\" style=\"fill:#939598\" /> <polygon class=\"cls-2\" points=\"95.51,1.42 95.51,0 103.45,0 103.45,4.7 103.45,4.7 102.03,4.7 102.03,1.42 \" id=\"polygon457\" style=\"fill:#939598\" /> <polygon class=\"cls-3\" points=\"102.03,7.97 102.03,4.7 103.45,4.7 103.45,9.39 103.45,9.39 100.65,9.39 100.65,7.97 \" id=\"polygon459\" style=\"fill:#bcbec0\" /> <rect y=\"3.9876499\" x=\"102.02941\" height=\"1.4238259\" width=\"1.4579451\" id=\"rect3926\" style=\"fill:#939598;fill-opacity:1\" /> <rect y=\"7.884686\" x=\"99.887817\" height=\"1.6934805\" width=\"1.397205\" id=\"rect3926-7\" style=\"fill:#939598;fill-opacity:1\" /> </g> </g> </g> </g> </svg>';\n\n\n svg.append(\"g\").html(logo_xml);\n\n }\n\n add_empty_message(){\n\n\n this.container_d3.selectAll(\".empty_message\").remove()\n\n\n /*if (phylo.phylo_embedded){\n\n if (phylo.bound_container[0]==this.container_object){\n tooltip_object[0].show()\n tooltip_object[3].show()\n }\n\n }\n\n */\n\n\n\n this.viewer.svg_d3.node().append('g')\n .attr(\"class\", 'empty_message')\n .attr('width',this.viewer.width )\n .attr(\"transform\", \"translate(\"+ (this.viewer.width/2)+\",\" + (this.viewer.height/2) + \")\")\n .append(\"text\")\n .attr(\"fill\", \"#333\")\n .attr('text-anchor', 'middle')\n .style('font-size', '1.2em')\n .html('No tree here! You can <a href=\"#\" id=\"add_tree_link' + this.container_object.uid +'\">add a tree</a> or use the examples below.')\n\n document.querySelector('#add_tree_link'+ this.container_object.uid).addEventListener('click', event => {\n $('#exampleModal' + this.container_object.uid).modal('show')\n });\n\n\n\n this.viewer.svg_d3.node().append('text')\n .attr(\"class\", 'empty_message')\n .attr(\"transform\", \"translate(\"+ (this.viewer.width/2)+\",\" + (this.viewer.height/2 + 24) + \")\")\n .attr('text-anchor', 'middle')\n .attr(\"fill\", \"#bbb\")\n .html(\"Ready to use examples: <a id='ex1\"+ this.container_object.uid +\"' style='cursor:pointer;text-decoration: underline'> Tree collection #1</a> - <a style='cursor:pointer;text-decoration: underline' id='ex2\"+ this.container_object.uid +\"'>Tree collection #2</a> \")\n\n\n\n document.querySelector('#ex1'+ this.container_object.uid).addEventListener('click', event => {\n this.container_object.add_tree(this.examples[\"LRF1\"],{'data_type': 'nhx'})\n this.container_object.add_tree(this.examples[\"r2t\"])\n this.container_object.add_tree(this.examples[\"unrooted1\"])\n this.container_object.add_tree(this.examples[\"small1\"])\n\n\n this.api.start()\n });\n\n document.querySelector('#ex2'+ this.container_object.uid).addEventListener('click', event => {\n\n this.container_object.add_tree(this.examples[\"LRF2\"],{'data_type': 'nhx'})\n this.container_object.add_tree(this.examples[\"rokas\"])\n this.container_object.add_tree(this.examples[\"nhx\"],{'data_type': 'nhx'})\n this.container_object.add_tree(this.examples[\"unrooted2\"])\n this.container_object.add_tree(this.examples[\"small2\"])\n this.container_object.add_tree(this.examples[\"stack\"],{'data_type': 'json', 'use_branch_lenght': false, 'show_histogram':true, 'collapse_level': 2})\n this.api.start()\n });\n\n }\n\n\n}\n\n//# sourceURL=webpack://PhyloIO/./src/interface.js?");
8639
+ eval("__webpack_require__.r(__webpack_exports__);\n/* harmony export */ __webpack_require__.d(__webpack_exports__, {\n/* harmony export */ \"default\": () => (/* binding */ Interface)\n/* harmony export */ });\n/* harmony import */ var file_saver__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! file-saver */ \"./node_modules/file-saver/dist/FileSaver.min.js\");\n/* harmony import */ var file_saver__WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(file_saver__WEBPACK_IMPORTED_MODULE_0__);\n/* harmony import */ var d3__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! d3 */ \"./node_modules/d3/index.js\");\n/* harmony import */ var bootstrap__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! bootstrap */ \"./node_modules/bootstrap/dist/js/bootstrap.esm.js\");\n/* harmony import */ var d3_scale_chromatic__WEBPACK_IMPORTED_MODULE_4__ = __webpack_require__(/*! d3-scale-chromatic */ \"./node_modules/d3-scale-chromatic/src/index.js\");\n/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_3__ = __webpack_require__(/*! ./utils */ \"./src/utils.js\");\n/* harmony import */ var _utils__WEBPACK_IMPORTED_MODULE_3___default = /*#__PURE__*/__webpack_require__.n(_utils__WEBPACK_IMPORTED_MODULE_3__);\n\n\n\n\n\n\n// D3 viewer Interface that render UI elements(buttons, slider, menu)\nclass Interface {\n\n constructor(v,c, empty_mode){\n\n var empty_mode = (typeof empty_mode !== 'undefined') ? empty_mode : false;\n\n this.scale_pixel_length = 120;\n\n this.container_object = c\n this.viewer = v\n this.container_d3 = v.container_d3\n this.api = this.container_object.api\n\n //MISC\n this.dismiss_blur = false\n\n this.examples={\n \"small1\": 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\"stack\" : {\"children\": [{\"children\": [{\"children\": [{\"children\": [{\"id\": \"HALHT\", \"last_updated\": \"Aug 20, 2012\", \"name\": \"Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755)\", \"nr_proteins\": 3855, \"release\": \"18-OCT-2011 (Rel. 110, Last updated, Version 2)\", \"source\": \"EBI\", \"taxid\": 634497}, {\"id\": \"HALMA\", \"last_updated\": \"Mar 25, 2014\", \"name\": \"Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)\", \"nr_proteins\": 4231, \"release\": \"02-FEB-2014 (Rel. 119, Last updated, Version 9)\", \"source\": \"EBI\", \"taxid\": 272569}], \"name\": \"Haloarcula\", \"taxid\": 2237, \"nr_hogs\": 4107, \"evolutionaryEvents\": {\"gained\": 178, \"retained\": 3532, \"duplicated\": 397, \"lost\": 1508, \"duplications\": 166}}, {\"id\": \"HALMD\", \"last_updated\": \"Nov 23, 2009\", \"name\": \"Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541)\", 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\"name\": \"Natronomonas\", \"taxid\": 63743, \"nr_hogs\": 3156, \"evolutionaryEvents\": {\"gained\": 93, \"lost\": 2294, \"duplicated\": 254, \"retained\": 2809, \"duplications\": 103}}], \"name\": \"Haloarculaceae\", \"taxid\": 1963268, \"nr_hogs\": 5206, \"evolutionaryEvents\": {\"gained\": 273, \"retained\": 4584, \"duplicated\": 349, \"lost\": 1040, \"duplications\": 163}}, {\"children\": [{\"id\": \"HALJB\", \"last_updated\": \"Dec 23, 2010\", \"name\": \"Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3)\", \"nr_proteins\": 3779, \"release\": \"30-NOV-2010 (Rel. 127, Last updated, Version 2)\", \"source\": \"Genome Reviews\", \"taxid\": 795797}, {\"children\": [{\"id\": \"HALS3\", \"last_updated\": \"May 8, 2008\", \"name\": \"Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)\", \"nr_proteins\": 2742, \"release\": \"29-APR-2008 (Rel. 90, Last updated, Version 1)\", \"source\": \"Genome Reviews\", \"taxid\": 478009}, {\"id\": \"HALSA\", 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.002093[&&NHX:D=N:B=100:T=9596],ENSP00000369497:0.001566[&&NHX:D=N:T=9606]):0.000219[&&NHX:D=N:B=17:T=207598],ENSGGOP00000027226:0.002031[&&NHX:D=N:T=9595]):0.004252[&&NHX:D=N:B=17:T=207598],ENSPPYP00000005997:0.007072[&&NHX:D=N:T=9601]):0.002903[&&NHX:D=N:B=99:T=9604],ENSNLEP00000001277:0.009571[&&NHX:D=N:T=61853]):0.002446[&&NHX:D=N:B=98:T=314295],(((((ENSCATP00000015406:0.00209[&&NHX:D=N:T=9531],ENSMLEP00000025266:0.0034[&&NHX:D=N:T=9568]):0.000372[&&NHX:D=N:B=60:T=9528],ENSPANP00000022490:0.001777[&&NHX:D=N:T=9555]):0.000724[&&NHX:D=N:B=54:T=9528],((ENSMFAP00000029418:0.001032[&&NHX:D=N:T=9541],ENSMMUP00000009432:0.005844[&&NHX:D=N:T=9544]):0.000105[&&NHX:D=N:B=40:T=9539],ENSMNEP00000025034:0.002176[&&NHX:D=N:T=9545]):0.001473[&&NHX:D=N:B=34:T=9539]):0.000352[&&NHX:D=N:B=54:T=9528],ENSCSAP00000013938:0.003981[&&NHX:D=N:T=60711]):0.00179[&&NHX:D=N:B=55:T=9528],(ENSRROP00000030947:0[&&NHX:D=N:T=61622],ENSRBIP00000000297:0.022474[&&NHX:D=N:T=61621]):0.008142[&&NHX:D=N:B=92:T=542827]):0.008355[&&NHX:D=N:B=58:T=9527]):0.007639[&&NHX:D=N:B=87:T=9526],((ENSCCAP00000031676:0.011669[&&NHX:D=N:T=2715852],ENSCJAP00000093240:0.015902[&&NHX:D=N:T=9483]):0.000332[&&NHX:D=N:B=23:T=9498],ENSANAP00000015411:0.01113[&&NHX:D=N:T=37293]):0.015231[&&NHX:D=N:B=23:T=9479]):0.029405[&&NHX:D=N:B=92:T=314293],ENSTSYP00000000441:0.060665[&&NHX:D=N:T=1868482]):0.003827[&&NHX:D=N:B=90:T=376913],(((ENSPCOP00000008219:0.014484[&&NHX:D=N:T=379532],ENSMICP00000044704:0.023431[&&NHX:D=N:T=30608]):0.001594[&&NHX:D=N:B=93:T=376915],ENSPSMP00000026900:0.017253[&&NHX:D=N:T=1328070]):0.012285[&&NHX:D=N:B=93:T=376915],ENSOGAP00000009477:0.064918[&&NHX:D=N:T=30611]):0.013645[&&NHX:D=N:B=99:T=376911]):0.005986[&&NHX:D=N:B=89:T=9443]):0.009172[&&NHX:D=N:B=12:T=314146]):0.008774[&&NHX:D=N:B=12:T=1437010],(ENSDNOP00000034947:0.046866[&&NHX:D=N:T=9361],ENSCHOP00000007822:0.050851[&&NHX:D=N:T=9358]):0.025312[&&NHX:D=N:B=100:T=9348]):0.006165[&&NHX:D=N:B=15:T=9347],((ENSETEP00000003277:0.154194[&&NHX:D=N:T=9371],ENSPCAP00000000440:0.17644[&&NHX:D=N:T=9813]):0.023418[&&NHX:D=N:B=93:T=311790],ENSLAFP00000002234:0.069853[&&NHX:D=N:T=9785]):0.048728[&&NHX:D=N:B=91:T=311790]):0.102726[&&NHX:D=N:B=69:T=9347],(((ENSVURP00010026286:0.02893[&&NHX:D=N:T=29139],ENSMEUP00000009812:0.045949[&&NHX:D=N:T=9315]):0.007079[&&NHX:D=N:B=96:T=38609],ENSSHAP00000012162:0.055381[&&NHX:D=N:T=9305]):0.015112[&&NHX:D=N:B=96:T=9263],ENSMODP00000033276:0.071803[&&NHX:D=N:T=13616]):0.123926[&&NHX:D=N:B=96:T=9263]):0.06077[&&NHX:D=N:B=87:T=32525],ENSOANP00000039689:0.264045[&&NHX:D=N:T=9258]):0.091853[&&NHX:D=N:B=90:T=40674],((((ENSPMRP00000005460:0.144183[&&NHX:D=N:T=64176],ENSSMRP00000016793:0.20051[&&NHX:D=N:T=96440]):0.009903[&&NHX:D=N:B=99:T=1329976],((ENSNSUP00000017478:0.005634[&&NHX:D=N:T=8663],ENSLLTP00000016858:0.029105[&&NHX:D=N:T=8630]):0.226094[&&NHX:D=N:B=100:T=8602],ENSACAP00000031108:0.186787[&&NHX:D=N:T=28377]):0.032366[&&NHX:D=N:B=7:T=1329911]):0.135778[&&NHX:D=N:B=3:T=1329912],ENSSPUP00000018703:0.144411[&&NHX:D=N:T=8508]):0.0332[&&NHX:D=N:B=0:T=8504],((((((ENSACCP00020021048:0.030244[&&NHX:D=N:T=223781],ENSSHBP00005016070:0.046241[&&NHX:D=N:T=2489341]):0.000673[&&NHX:D=N:B=100:T=8825],((((ENSGFOP00000022131:0.015965[&&NHX:D=N:T=48883],ENSSCAP00000011543:0.017989[&&NHX:D=N:T=9135]):0.005354[&&NHX:D=N:B=100:T=9126],ENSTGUP00000012130:0.02239[&&NHX:D=N:T=59729]):0.005211[&&NHX:DD=Y:B=100:T=9126],ENSPMJP00000020154:0.031769[&&NHX:D=N:T=9157]):0.0011[&&NHX:D=N:B=13:T=9126],ENSFALP00000008821:0.024057[&&NHX:D=N:T=59894]):0.055526[&&NHX:D=N:B=13:T=9126]):0.017918[&&NHX:D=N:B=100:T=8825],(((ENSGALP00000027524:0.023757[&&NHX:D=N:T=9031],ENSMGAP00000015990:0.025887[&&NHX:D=N:T=9103]):0.000864[&&NHX:D=N:B=94:T=9005],ENSCJPP00005026171:0.031852[&&NHX:D=N:T=93934]):0.055074[&&NHX:D=N:B=94:T=9005],ENSAPLP00000007411:0.069477[&&NHX:D=N:T=8840]):0.021576[&&NHX:D=N:B=100:T=1549675]):0.027956[&&NHX:D=N:B=98:T=8825],ENSSCUP00000019773:0.055174[&&NHX:D=N:T=441894]):0.138375[&&NHX:D=N:B=98:T=8782],ENSCPRP00005008306:0.1287[&&NHX:D=N:T=8502]):0.016113[&&NHX:D=N:B=0:T=8492],((((ENSTMTP00000024650:0.004017[&&NHX:D=N:T=2587831],ENSTMTP00000012675:0.005315[&&NHX:D=N:T=2587831]):0.002859[&&NHX:D=Y:B=100:T=2587831],ENSCPBP00000004776:0.007644[&&NHX:D=N:T=8478]):0.005658[&&NHX:D=N:B=100:T=8476],(ENSGEVP00005002652:0.01601[&&NHX:D=N:T=1825980],ENSCABP00000011062:0.022245[&&NHX:D=N:T=106734]):0.009454[&&NHX:D=N:B=99:T=8487]):0.01978[&&NHX:D=N:B=99:T=8486],ENSPSIP00000012858:0.064659[&&NHX:D=N:T=13735]):0.046163[&&NHX:D=N:B=100:T=8464]):0.04067[&&NHX:D=N:B=0:T=1329799]):0.101687[&&NHX:D=N:B=9:T=32561]):0.107575[&&NHX:D=N:B=89:T=32524],(ENSXETP00000037057:0.302164[&&NHX:D=N:T=8364],ENSLLEP00000043860:0.366066[&&NHX:D=N:T=445787]):0.181688[&&NHX:D=N:B=96:T=8342]):0.09645[&&NHX:D=N:B=49:T=32523],ENSLACP00000008815:0.24746[&&NHX:D=N:T=7897]):0.045271[&&NHX:D=N:B=14:T=8287],((((((((((((((ENSTNIP00000002435:0.089877[&&NHX:D=N:T=99883],ENSTRUP00000015030:0.091412[&&NHX:D=N:T=31033]):0.146182[&&NHX:D=N:B=100:T=31031],ENSGACP00000015199:0.143397[&&NHX:D=N:T=69293]):0.009443[&&NHX:D=N:B=0:T=1489922],ENSSAUP00010031327:0.096966[&&NHX:D=N:T=8175]):0.004928[&&NHX:D=N:B=0:T=1489922],(ENSDLAP00005043188:0.096295[&&NHX:D=N:T=13489],ENSLBEP00000002832:0.154656[&&NHX:D=N:T=56723]):0.015316[&&NHX:D=N:B=15:T=1489922]):0.007374[&&NHX:D=N:B=0:T=1489922],(ENSSLUP00000030625:0.065993[&&NHX:D=N:T=283035],ENSCGOP00000037196:0.066502[&&NHX:D=N:T=56716]):0.014978[&&NHX:D=N:B=91:T=8111]):0.014192[&&NHX:DD=Y:B=0:T=1489922],(((ENSMAMP00000049017:0.112322[&&NHX:D=N:T=205130],ENSBSLP00000034562:0.168852[&&NHX:D=N:T=158456]):0.008315[&&NHX:D=N:B=0:T=1489892],((ENSSDUP00000015520:0.00513[&&NHX:D=N:T=41447],ENSSLDP00000006566:0.007791[&&NHX:D=N:T=1841481]):0.042577[&&NHX:D=N:B=100:T=8160],ENSLCAP00010030231:0.060104[&&NHX:D=N:T=8187]):0.016173[&&NHX:D=N:B=93:T=1489904]):0[&&NHX:D=N:B=0:T=1489872],(ENSSMAP00000010386:0.11135[&&NHX:D=N:T=52904],ENSATEP00000018320:0.126751[&&NHX:D=N:T=64144]):0.003595[&&NHX:D=N:B=14:T=1489872]):0.014963[&&NHX:DD=Y:B=0:T=1489872]):0.008717[&&NHX:D=N:B=0:T=1489872],(((ENSAOCP00000005723:0.022605[&&NHX:D=N:T=80972],ENSAPOP00000003431:0.032376[&&NHX:D=N:T=80966]):0.067976[&&NHX:D=N:B=100:T=30863],(((ENSMZEP00005015140:0.002522[&&NHX:D=N:T=106582],ENSHBUP00000022221:0.00276[&&NHX:D=N:T=8153]):0.005622[&&NHX:D=N:B=100:T=319058],ENSNBRP00000031193:0.014221[&&NHX:D=N:T=32507]):0.055295[&&NHX:D=N:B=100:T=318546],ENSACIP00000005496:0.085203[&&NHX:D=N:T=61819]):0.069808[&&NHX:D=N:B=97:T=8113]):0.006383[&&NHX:D=N:B=72:T=1489908],(((((((ENSPFOP00000001575:0.001877[&&NHX:D=N:T=48698],ENSPLAP00000026811:0.002682[&&NHX:D=N:T=48699]):0.011341[&&NHX:D=N:B=100:T=8080],ENSPREP00000018297:0.014432[&&NHX:D=N:T=8081]):0.009367[&&NHX:D=N:B=100:T=8080],ENSXMAP00000006983:0.020943[&&NHX:D=N:T=8083]):0.07372[&&NHX:D=N:B=100:T=586240],ENSFHEP00000010259:0.090262[&&NHX:D=N:T=8078]):0.010081[&&NHX:D=N:B=100:T=8087],ENSCVAP00000010146:0.166223[&&NHX:D=N:T=28743]):0.099285[&&NHX:D=N:B=100:T=8087],ENSKMAP00000010397:0.154786[&&NHX:D=N:T=37003]):0.018665[&&NHX:D=N:B=11:T=28738],((ENSORLP00000039367:0.012182[&&NHX:D=N:T=8090],ENSOSIP00000028295:0.023719[&&NHX:D=N:T=183150]):0.048352[&&NHX:D=N:B=100:T=8089],ENSOMEP00000001576:0.066811[&&NHX:D=N:T=30732]):0.195635[&&NHX:D=N:B=100:T=8089]):0.03392[&&NHX:D=N:B=9:T=1489913]):0.027302[&&NHX:D=N:B=0:T=1489908]):0.081822[&&NHX:D=N:B=0:T=1489872],ENSMMDP00005016864:0.115686[&&NHX:D=N:T=586833]):0.133158[&&NHX:D=N:B=0:T=123369],ENSGMOP00000010385:0.447969[&&NHX:D=N:T=8049]):0.04027[&&NHX:D=N:B=1:T=123368],(((ENSSSAP00000049301:0.003158[&&NHX:D=N:T=8030],ENSSTUP00000089299:0.005224[&&NHX:D=N:T=8032]):0.007814[&&NHX:D=N:B=100:T=8028],((ENSOTSP00005006826:0.003553[&&NHX:D=N:T=74940],ENSOKIP00005016504:0.004245[&&NHX:D=N:T=8019]):0.001513[&&NHX:D=N:B=95:T=8016],ENSOMYP00000096229:0.004581[&&NHX:D=N:T=8022]):0.012062[&&NHX:D=N:B=95:T=8016]):0.008081[&&NHX:D=N:B=79:T=504568],ENSHHUP00000013710:0.009428[&&NHX:D=N:T=62062]):0.220475[&&NHX:D=N:B=79:T=504568]):0.063675[&&NHX:D=N:B=0:T=1489388],((((ENSPNAP00000002089:0.088107[&&NHX:D=N:T=42514],ENSAMXP00000037719:0.141689[&&NHX:D=N:T=7994]):0.040456[&&NHX:D=N:B=100:T=1489739],ENSEEEP00000018632:0.175328[&&NHX:D=N:T=8005]):0.011488[&&NHX:D=N:B=52:T=186628],ENSIPUP00000019387:0.191507[&&NHX:D=N:T=7998]):0.130849[&&NHX:D=N:B=52:T=186628],((((ENSCCRP00000004504:0.013011[&&NHX:D=N:T=7962],ENSSGRP00000031158:0.015922[&&NHX:D=N:T=75366]):0.000854[&&NHX:D=N:B=100:T=2743694],ENSCARP00000056251:0.028035[&&NHX:D=N:T=7957]):0.0219[&&NHX:D=N:B=100:T=2743694],ENSSGRP00000071274:0.037074[&&NHX:D=N:T=75366]):0.035154[&&NHX:D=Y:B=100:T=2743694],ENSDARP00000099674:0.101043[&&NHX:D=N:T=7955]):0.247776[&&NHX:D=N:B=100:T=30727]):0.127786[&&NHX:D=N:B=98:T=186626]):0.062612[&&NHX:D=N:B=25:T=186625],(ENSPKIP00000013632:0.279788[&&NHX:D=N:T=1676925],ENSSFOP00015002218:0.291858[&&NHX:D=N:T=113540]):0.102594[&&NHX:D=N:B=88:T=41712]):0.110179[&&NHX:D=N:B=0:T=1489341],ENSLOCP00000009962:0.210021[&&NHX:D=N:T=7918]):0.138094[&&NHX:D=N:B=2:T=41665],ENSECRP00000005112:0.560007[&&NHX:D=N:T=27687]):0.12002[&&NHX:D=N:B=55:T=7898]):0.072614[&&NHX:D=N:B=3:T=117571],ENSCMIP00000046776:0.395803[&&NHX:D=N:T=7868]):0.1[&&NHX:D=N:B=4:T=7776],ENSEBUP00000009898:0.958294[&&NHX:D=N:T=7764]):0.1[&&NHX:D=N:B=0:T=7742];\",\n \"nhx2\" : \"((((POP23a_CIOIN_ENSCING00000016202,POP23b_CIOIN_ENSCING00000016169)[&&NHX:Ev=duplication],POP23_CIOSA_ENSCSAVG00000000248),((POP23a_BRAFL_C3ZMF1,POP23b_BRAFL_121417)[&&NHX:Ev=duplication],(((POP3_ORYLA_ENSORLG00000019669,POP3_GASAC_ENSGACG00000014023,POP3_DANRE_Q6JWW1),(POP3_XENTR_B1H1F6,(POP3_CHICK_Q9DG25,(POP3_ORNAN_ENSOANG00000004179,POP3_MONDO_ENSMODG00000018033,((POP3_MOUSE_Q9ES81,POP3_RAT_Q3BCU3),POP3_RABIT_ENSOCUG00000025973,POP3_MACMU_ENSMMUG00000014473,POP3_HUMAN_Q9HBV1))))),(((POP2_GASAC_ENSGACG00000001420,POP2_ORYLA_ENSORLG00000008627,POP2_TAKRU_ENSTRUG00000015933),POP2_DANRE_ENSDARG00000069922),POP2_XENTR_ENSXETG00000018064,(((POP2_TAEGU_ENSTGUG00000013383,POP2_CHICK_Q6T9Z5),POP2_ANOCA_ENSACAG00000003557),((POP2_MACEU_ENSMEUG00000015825,POP2_MONDO_ENSMODG00000018205),((POP2_RABIT_ENSOCUG00000009515,(POP2_RAT_Q6P722,POP2_MOUSE_Q9ES82)),(POP2_MACMU_ENSMMUG00000000905,POP2_HUMAN_Q9HBU9))))))[&&NHX:Ev=duplication])),((POP1_CIOSA_ENSCSAVG00000000247,POP1_CIOIN_ENSCING00000000496),((POP1_DANRE_Q5PQZ7,(POP1_ORYLA_ENSORLG00000019663,POP1_GASAC_ENSGACG00000014015,POP1_TAKRU_ENSORLG00000019663)),(POP1_XENTR_B1H1G2,(POP1_ANOCA_ENSACAG00000003910,(POP1_TAEGU_ENSTGUG00000012218,POP1_CHICK_Q9DG23)),POP1_ORNAN_ENSOANG00000004180,POP1_MONDO_ENSMODG00000018034,(POP1_RABIT_ENSOCUG00000016944,(POP1_RAT_Q3BCU4,POP1_MOUSE_Q9ES83),(POP1_HUMAN_Q8NE79,POP1_MACMU_ENSMMUG00000014471))))))[&&NHX:Ev=duplication];\",\n \"rokas\" : \"(Schizosaccharomyces pombe:0.545914,(Saitoella complicata:0.57412,((Arthrobotrys oligospora:0.539923,((Parastagonospora nodorum:0.465825,(Xylona heveae:0.272728,(Coccidioides immitis:0.254443,Aspergillus nidulans:0.266048)1:0.18207)1:0.041547)1:0.0419986,((Botrytis cinerea:0.0493876,Sclerotinia sclerotiorum:0.0433921)1:0.237364,(Neurospora crassa:0.27673,Fusarium graminearum:0.291175)1:0.153952)1:0.127477)1:0.210957)1:0.198261,(((Lipomyces suomiensis NRRL Y-17356:0.234623,Lipomyces oligophaga NRRL Y-17247:0.370846)1:0.0775974,((Lipomyces japonicus NRRL Y-17848:0.3372,Lipomyces lipofer NRRL Y-11555:0.166258)1:0.0562401,(Lipomyces doorenjongii NRRL Y-27504:0.289327,(Lipomyces kononenkoae NRRL Y-11553:0.0897564,(Lipomyces starkeyi NRRL Y-11557:0.0198789,(Lipomyces mesembrius NRRL Y-27506:0.0193032,Lipomyces arxii NRRL Y-17921:0.0198748)1:0.00839469)1:0.0452686)1:0.113493)1:0.0365204)1:0.0522388)1:0.351588,(((Trigonopsis vinaria NRRL Y-5715:0.32117,Trigonopsis variabilis NRRL Y-1579:0.36434)1:0.434566,(Botryozyma nematodophila NRRL Y-17705:0.702864,(Tortispora starmeri NRRL Y-63665:0.502464,(Tortispora caseinolytica NRRL Y-17796:0.0396928,Tortispora ganteri NRRL Y-17035:0.0458542)1:0.458583)1:0.374135)1:0.158759)1:0.0771598,((((Nadsonia fulvescens var. elongata DSM 6958:0.0202083,Nadsonia fulvescens NRRL Y-12810:0.0176171)1:0.536297,(Candida hispaniensis NRRL Y-5580:0.422522,(Yarrowia bubula NRRL Y-63668:0.0502129,(Yarrowia keelungensis JCM 14894:0.0300806,(Yarrowia lipolytica:0.0264517,(Yarrowia divulgata NRRL Y-63741:0.00987236,Yarrowia deformans JCM 1694:0.0108765)1:0.0239202)1:0.00862142)1:0.0258247)1:0.296485)1:0.408355)1:0.0777756,((Middelhovenomyces tepae NRRL Y-17670:0.443049,((Saprochaete clavata:0.309611,Magnusiomyces tetrasperma NRRL Y-7288:0.34292)1:0.186613,(Galactomyces candidus Phaff 72-186:0.207517,(Dipodascus geniculatus NRRL Y-17628:0.0852517,Dipodascus albidus NRRL Y-12859:0.0862487)1:0.229904)1:0.189193)1:0.149192)1:0.0518788,(((Deakozyma indianensis NRRL YB-1937:0.184702,Candida incommunis NRRL Y-17085:0.20747)1:0.543275,((Wickerhamiella infanticola DS02:0.528425,Wickerhamiella cacticola NRRL Y-27362:0.692381)1:0.075832,(Wickerhamiella versatilis JCM 5958:0.645274,(Wickerhamiella domercqiae:0.626221,(Candida apicola NRRL Y-50540:0.434359,Starmerella bombicola JCM 9596:0.383847)1:0.356841)1:0.0846685)1:0.155283)1:0.413088)1:0.0954418,(((Sugiyamaella lignohabitans CBS 10342:0.411366,(Diddensiella caesifluorescens NRRL Y-48781:0.336519,Spencermartinsiella europaea NRRL Y-48265:0.41893)1:0.0421993)1:0.0384646,(Groenewaldozyma salmanticensis NRRL Y-17090:0.561259,(Zygoascus meyerae NRRL Y-17319:0.366231,Zygoascus ofunaensis NRRL Y-10998:0.397239)1:0.214422)1:0.0535895)1:0.0458319,(Blastobotrys muscicola NRRL Y-7993:0.458918,((Blastobotrys mokoenaii NRRL Y-27120:0.362928,(Blastobotrys proliferans NRRL Y-17577:0.228429,Blastobotrys nivea NRRL Y-17581:0.269851)1:0.158495)1:0.079695,(Blastobotrys serpentis NRRL Y-48249:0.327946,((Blastobotrys raffinosifermentans:0.0217085,Blastobotrys adeninivorans:0.018147)1:0.222596,(Blastobotrys peoriensis NRRL YB-2290:0.169572,Blastobotrys americana NRRL Y-6844:0.161305)1:0.170868)1:0.173794)1:0.0621326)1:0.0484003)1:0.062313)1:0.0537951)1:0.0469088)1:0.0867807)1:0.0634323,((Alloascoidea hylecoeti JCM 7604:0.573891,(Sporopachydermia lactativora NRRL Y-11591:0.293628,Sporopachydermia quercuum JCM 9486:0.229415)1:0.463025)1:0.0601744,((((Ascoidea asiatica JCM 7603:0.367013,Ascoidea rubescens:0.321961)1:0.263464,(Saccharomycopsis capsularis NRRL Y-17639:0.190582,Saccharomycopsis malanga JCM 7620:0.198358)1:0.40498)1:0.163324,((Candida ponderosae NRRL YB-2307:0.38206,((Starmera quercuum NRRL YB-4281:0.250343,(Starmera amethionina NRRL Y-10978:0.208149,Candida stellimalicola NRRL Y-17912:0.200412)1:0.200109)1:0.0953975,((Wickerhamomyces ciferrii NRRL Y-1031:0.190972,Wickerhamomyces anomalus:0.135192)1:0.110022,((Wickerhamomyces hampshirensis NRRL YB-4128:0.251418,(Candida freyschussii:0.200517,((Cyberlindnera xylosilytica NRRL YB-2097:0.171593,(Cyberlindnera fabianii JCM 3601:0.173452,(Cyberlindnera petersonii NRRL YB-3808:0.146495,(Cyberlindnera americana NRRL Y-2156:0.124404,Candida mycetangii NRRL Y-6843:0.138201)1:0.021936)1:0.0555066)1:0.0255677)1:0.104307,((Cyberlindnera mrakii NRRL Y-1364:0.0362246,(Cyberlindnera saturnus NRRL Y-17396:0.0192395,Cyberlindnera suaveolens NRRL Y-17391:0.0161438)1:0.0136523)1:0.121465,((Cyberlindnera jadinii NRRL Y-1542:0.216631,Candida vartiovaarae:0.174307)1:0.0287187,(Cyberlindnera maclurae NRRL Y-5377:0.0723855,Cyberlindnera misumaiensis NRRL Y-17389:0.0590068)1:0.157678)1:0.0254444)1:0.128382)1:0.0244259)1:0.0399877)1:0.0690847,((Wickerhamomyces alni NRRL Y-11625:0.198181,(Wickerhamomyces canadensis NRRL Y-1888:0.0181265,Wickerhamomyces sp.:0.0258553)1:0.152098)1:0.104484,(Wickerhamomyces bovis NRRL YB-4184:0.238507,((Barnettozyma hawaiiensis NRRL Y-27270:0.0769162,(Barnettozyma californica NRRL Y-17395:0.0637227,Barnettozyma populi NRRL Y-12728:0.069715)1:0.012496)1:0.171001,((Barnettozyma pratensis NRRL Y-12696:0.134345,Barnettozyma salicaria NRRL Y-6780:0.201535)1:0.0253729,(Candida montana NRRL Y-17326:0.18273,((Phaffomyces thermotolerans NRRL Y-11709:0.0347558,Candida orba NRRL Y-27336:0.0268361)1:0.0450689,(Phaffomyces opuntiae NRRL Y-11707:0.0227806,Phaffomyces antillensis NRRL Y-12881:0.0381186)1:0.0503677)1:0.136412)1:0.0550969)1:0.0252933)1:0.148508)1:0.0456798)1:0.0515684)1:0.0559147)1:0.0396837)1:0.0394501)1:0.188948,(((Hanseniaspora osmophila NRRL Y-1613:0.0533805,Hanseniaspora vineae:0.0482455)1:0.375889,((Hanseniaspora singularis:0.230831,Hanseniaspora valbyensis NRRL Y-1626:0.170847)1:0.0889552,(Kloeckera hatyaiensis:0.149005,(Hanseniaspora pseudoguilliermondii:0.11701,(Hanseniaspora uvarum:0.0603265,Hanseniaspora clermontiae NRRL Y-27515:0.0811774)1:0.037012)1:0.118708)1:0.169466)1:0.805928)1:0.306057,((((Kluyveromyces aestuarii NRRL YB-4510:0.247878,(Kluyveromyces marxianus CBS6556:0.14186,(Kluyveromyces lactis NRRL Y-1140:0.0794227,Kluyveromyces dobzhanskii NRRL Y-1974:0.107991)1:0.0644926)1:0.119991)1:0.234335,((Eremothecium coryli CBS 5749:0.245286,Eremothecium sinecaudum ATCC 58844:0.262753)1:0.0575176,(Eremothecium cymbalariae DBVPG 7215:0.226178,(Eremothecium gossypii ATCC 10895:0.046311,Ashbya aceri:0.0356574)1:0.257241)1:0.0330026)1:0.17076)1:0.0607471,(Lachancea kluyveri:0.221801,((Lachancea fermentati:0.125926,Lachancea cidri:0.116386)1:0.108281,(Lachancea mirantina:0.360697,((Lachancea waltii:0.155994,(Lachancea quebecensis:0.0412753,Lachancea thermotolerans CBS 6340:0.0381374)1:0.122374)1:0.048069,(Lachancea nothofagi:0.125696,(Lachancea dasiensis:0.187333,(Lachancea meyersii CBS 8951:0.0930237,(Lachancea fantastica:0.0613265,Lachancea lanzarotensis CBS 12615:0.0662562)1:0.080869)1:0.0868343)1:0.0232028)1:0.0796876)1:0.11944)1:0.0368276)1:0.0869217)1:0.0544235)1:0.046723,(((Zygosaccharomyces rouxii CBS 732:0.143413,(Zygosaccharomyces kombuchaensis NRRL YB-4811:0.0926322,(Zygosaccharomyces bisporus NRRL Y-12626:0.083556,Zygosaccharomyces bailii:0.0939337)1:0.0304452)1:0.0574531)1:0.176842,((Zygotorulaspora florentina NRRL Y-1560:0.131232,Zygotorulaspora mrakii NRRL Y-12654:0.168677)1:0.11848,(Torulaspora microellipsoides:0.15825,(Torulaspora maleeae CBS 10694:0.172696,(Torulaspora delbrueckii:0.0799621,(Torulaspora franciscae NRRL Y-17532:0.0354865,Torulaspora pretoriensis NRRL Y-17251:0.0343667)1:0.0834631)1:0.0804511)1:0.0953121)1:0.0235795)1:0.0481102)1:0.0871222,(((Tetrapisispora blattae:0.271746,Yueomyces sinensis NRRL Y-17406:0.347888)1:0.216158,(Vanderwaltozyma polyspora:0.261306,(Tetrapisispora iriomotensis NRRL Y-27309:0.150965,(Tetrapisispora phaffii CBS 4417:0.100885,(Tetrapisispora namnaoensis NRRL Y-27982:0.0531639,Tetrapisispora fleetii NRRL Y-27350:0.0682282)1:0.0667913)1:0.0911273)1:0.204252)1:0.0968006)1:0.049682,((((Nakaseomyces bacillisporus CBS 7720:0.318907,_Candida_ castellii CBS 4332:0.44969)1:0.119593,(_Candida_ glabrata CBS 138:0.19376,(_Candida_ bracarensis CBS 10154:0.0791127,(_Candida_ nivariensis CBS 9983:0.0591139,Nakaseomyces delphensis CBS 2170:0.1071)1:0.0282267)1:0.118561)1:0.24292)1:0.043942,((Saccharomyces uvarum:0.01864,Saccharomyces eubayanus:0.0211527)1:0.0363173,(Saccharomyces arboricola:0.0587131,(Saccharomyces kudriavzevii:0.0570128,(Saccharomyces mikatae IFO 1815:0.0529368,(Saccharomyces paradoxus:0.0250749,Saccharomyces cerevisiae S288C:0.0325262)1:0.0191755)1:0.0192692)1:0.00934172)1:0.0155583)1:0.277733)1:0.0304696,((Naumovozyma dairenensis:0.244773,Naumovozyma castellii:0.223994)1:0.116605,(((Kazachstania africana CBS 2517:0.302329,Kazachstania viticola NRRL Y-27206:0.304357)1:0.0420759,((Kazachstania turicensis NRRL Y-48834:0.232443,Kazachstania kunashirensis NRRL Y-27209:0.160829)1:0.120327,(Kazachstania spencerorum NRRL Y-17920:0.238158,Kazachstania rosinii NRRL Y-17919:0.204563)1:0.0374176)1:0.0694195)1:0.0333483,((Kazachstania intestinalis NRRL Y-48847:0.427517,Kazachstania martiniae NRRL Y-409:0.262551)1:0.0379646,((Kazachstania naganishii CBS 8797:0.335856,Kazachstania bromeliacearum NRRL Y-48836:0.198593)1:0.0338563,(Kazachstania taianensis NRRL Y-48846:0.27887,((Kazachstania transvaalensis NRRL Y-17245:0.111612,Kazachstania yakushimaensis NRRL Y-48837:0.0900106)1:0.290831,(Kazachstania siamensis NRRL Y-48842:0.114965,(Kazachstania unispora NRRL Y-1556:0.0645858,(Kazachstania solicola NRRL Y-27207:0.0241196,Kazachstania aerobia NRRL Y-27976:0.0305719)1:0.0678491)1:0.059458)1:0.1733)1:0.0384928)1:0.0508605)1:0.0761265)1:0.0382292)1:0.0669668)1:0.036691)1:0.0374781)1:0.0230192)1:0.115608)1:0.127779)1:0.342113)1:0.0913588)1:0.0347262,(((Pachysolen tannophilus NRRL Y-2460:0.313751,((Peterozyma xylosa NRRL Y-12939:0.0402272,Peterozyma toletana NRRL YB-4247:0.0398928)1:0.321195,(Nakazawaea peltata JCM 9829:0.323069,Nakazawaea holstii NRRL Y-2155:0.206923)1:0.167264)1:0.0471457)1:0.163091,(((Citeromyces siamensis NRRL Y-27975:0.199314,(Citeromyces hawaiiensis NRRL Y-11581:0.0676646,Citeromyces matritensis NRRL Y-2407:0.0674657)1:0.134721)1:0.41892,(Komagataella pastoris:0.0617151,(Komagataella populi NRRL YB-455:0.0093125,Komagataella pseudopastoris NRRL Y-27603:0.00934262)1:0.0520784)1:0.548169)1:0.0572955,(Kuraishia ogatae NRRL Y-48474:0.423004,((Kuraishia capsulata:0.167402,Kuraishia molischiana NRRL Y-27899:0.174477)1:0.340405,(Candida boidinii JCM 9604:0.409104,((Ogataea methylivora NRRL Y-17250:0.262112,(Ogataea ramenticola NRRL YB-1985:0.331126,(Candida succiphila JCM 9445:0.377882,Ogataea naganishii NRRL Y-7654:0.377342)1:0.0486474)1:0.0581327)1:0.0742491,((((Ogataea nitratoaversa NRRL Y-48449:0.140695,Ogataea pilisensis NRRL Y-27598:0.121524)1:0.101152,(Candida arabinofermentans NRRL YB-2248:0.23367,(Ogataea trehalophila NRRL Y-6781:0.0634693,Ogataea methanolica JCM 10240:0.0635138)1:0.143303)1:0.0364214)1:0.0681563,((Ogataea trehaloabstinens NRRL Y-27595:0.240241,Ogataea populi-albae NRRL Y-48632:0.19583)1:0.109824,((Ogataea zsoltii NRRL Y-27601:0.106801,(Ogataea glucozyma NRRL YB-2185:0.125497,(Ogataea henricii NRRL YB-2194:0.0652918,Ogataea pini NRRL Y-11528:0.0832313)1:0.0564285)1:0.0349258)1:0.117879,((Ogataea minuta NRRL Y-411:0.0815234,Ogataea nonfermentans NRRL YB-2203:0.0649159)1:0.0858242,(Ogataea kodamae NRRL Y-17234:0.276318,(Ogataea philodendri NRRL Y-7210:0.16107,(Ogataea polymorpha NCYC 495 leu1.1:0.0237039,Ogataea parapolymorpha:0.0123489)1:0.137202)1:0.0329933)1:0.0274717)1:0.178127)1:0.0484727)1:0.0552351)1:0.0549412,((Ambrosiozyma maleeae NRRL Y-63635:0.258273,((Ambrosiozyma kashinagacola JCM 15019:0.196206,(Ambrosiozyma pseudovanderkliftii NRRL Y-63632:0.103065,Ambrosiozyma vanderkliftii NRRL Y-63633:0.0839667)1:0.0913495)1:0.0409106,(Ambrosiozyma monospora JCM 7599:0.234639,(Ambrosiozyma oregonensis NRRL Y-6106:0.0826625,(Ambrosiozyma philentoma NRRL Y-7523:0.0357081,Ambrosiozyma ambrosiae NRRL Y-7524:0.0705379)1:0.026201)1:0.130669)1:0.03731)1:0.0668046)1:0.117317,((Brettanomyces custersianus NRRL Y-6653:0.31306,(Brettanomyces anomalus:0.0854333,Brettanomyces bruxellensis CBS 2499:0.0907076)1:0.224162)1:0.282927,((Kregervanrija fluxuum NRRL YB-4273:0.0355143,Kregervanrija delftensis NRRL Y-7119:0.0311594)1:0.225534,((Martiniozyma abiesophila NRRL Y-11514:0.320478,((Saturnispora mendoncae NRRL Y-11515:0.161201,Saturnispora silvae NRRL Y-6725:0.331441)1:0.105865,(Saturnispora saitoi NRRL Y-6671:0.0911533,(Saturnispora zaruensis NRRL Y-7008:0.0580631,(Saturnispora dispora NRRL Y-1447:0.031157,(Saturnispora serradocipensis NRRL Y-48717:0.0165811,Saturnispora hagleri NRRL Y-27828:0.0129394)1:0.0233711)1:0.0308985)1:0.0776961)1:0.125167)1:0.181222)1:0.143022,((Candida sorboxylosa JCM 1536:0.372151,Pichia terricola NRRL YB-4310:0.256406)1:0.0700447,(Pichia membranifaciens KS47-1:0.213499,((Pichia heedii NRRL Y-10967:0.130518,Pichia nakasei NRRL Y-7686:0.123153)1:0.187264,((Pichia norvegensis NRRL Y-7687:0.307748,Pichia kudriavzevii:0.274245)1:0.047663,(Pichia occidentalis NRRL Y-7552:0.190823,Pichia exigua NRRL Y-10920:0.216283)1:0.0273444)1:0.0202107)1:0.0282289)1:0.0444849)1:0.151672)1:0.0978808)1:0.150478)1:0.0843851)1:0.0446598)1:0.111139)1:0.0367086)1:0.137306)1:0.0425494)1:0.0600483)1:0.0499527)1:0.103505,(Babjeviella inositovora NRRL Y-12698:0.594547,((Cephaloascus albidus:0.18956,Cephaloascus fragrans:0.210025)1:0.210658,((Candida schatavii NRRL Y-17078:0.29428,(Candida fragi NRRL Y-17910:0.0714581,Kurtzmaniella cleridarum NRRL Y-48386:0.0735961)1:0.306068)1:0.108229,(((Candida athensensis NRRL Y-27644:0.132895,(Meyerozyma guilliermondii ATCC 6260:0.0289919,(Candida carpophila JCM 9396:0.0151985,Meyerozyma caribbica:0.0185042)1:0.0206601)1:0.0934175)1:0.329014,(Candida ascalaphidarum NRRL Y-27908:0.414658,((Candida gorgasii NRRL Y-27707:0.221357,Candida tammaniensis NRRL Y-8257:0.186332)1:0.101116,(Yamadazyma scolyti NRRL Y-5512:0.270025,(Yamadazyma tenuis:0.191175,(Yamadazyma nakazawae NRRL Y-7903:0.0860963,Yamadazyma philogaea NRRL Y-7813:0.119211)1:0.13583)1:0.0698957)1:0.0621763)1:0.179539)1:0.0478873)1:0.0252656,(((Millerozyma acaciae JCM 10732:0.318905,(Debaryomyces maramus NRRL Y-2171:0.126252,(Debaryomyces nepalensis NRRL Y-7108:0.107212,(Debaryomyces hansenii:0.0420625,(Debaryomyces prosopidis NRRL Y-27369:0.0489959,(Debaryomyces subglobosus NRRL Y-6666:0.0269918,Debaryomyces fabryi NRRL Y-17914:0.0215588)1:0.00458487)1:0.0217112)1:0.0474478)1:0.0562497)1:0.0791464)1:0.0717927,((Priceomyces carsonii NRRL YB-4275:0.202197,(Priceomyces medius NRRL Y-7122:0.126528,(Priceomyces haplophilus JCM 1635:0.134127,Priceomyces castillae NRRL Y-7501:0.0664317)1:0.052666)1:0.106057)1:0.170928,(((Wickerhamia fluorescens JCM 1821:0.309207,(Teunomyces gatunensis NRRL Y-48064:0.139302,(Teunomyces cretensis NRRL Y-27777:0.0373482,Teunomyces kruisii NRRL Y-17087:0.0354532)1:0.0674172)1:0.152253)1:0.0395823,((Suhomyces pyralidae NRRL Y-27085:0.207777,(Suhomyces tanzawaensis NRRL Y-17324:0.114461,(Suhomyces canberraensis NRRL YB-2417:0.126395,Suhomyces emberorum NRRL Y-27606:0.157814)1:0.0330656)1:0.074523)1:0.0880461,(Aciculoconidium aculeatum NRRL YB-4298:0.278681,(Kodamaea laetipori NRRL Y-27713:0.166081,(Kodamaea ohmeri NRRL Y-1932:0.120016,Candida restingae NRRL Y-27358:0.122045)1:0.175941)1:0.0561324)1:0.13211)1:0.0306706)1:0.0320665,((Scheffersomyces stipitis:0.162145,Scheffersomyces lignosus JCM 9837:0.141854)1:0.103183,(((Spathaspora hagerdaliae:0.0274865,Spathaspora gorwiae UFMG-CM-Y312:0.0270552)1:0.185213,(Spathaspora passalidarum NRRL Y-27907:0.0756431,(Spathaspora arborariae:0.0863436,Spathaspora girioi:0.103206)1:0.0276678)1:0.158335)1:0.0543878,((Candida corydali NRRL Y-27910:0.321211,(Lodderomyces elongisporus:0.271322,(Candida parapsilosis:0.0662414,Candida orthopsilosis:0.0591273)1:0.173632)1:0.103296)1:0.0375885,((Candida dubliniensis CD36:0.0370067,Candida albicans WO-1:0.0309348)1:0.126495,(Candida tropicalis ATCC 200956 MY1012:0.0573369,Candida sojae GF41:0.0691758)1:0.118022)1:0.0968903)1:0.0675366)1:0.119154)1:0.0332128)1:0.0611332)1:0.0307845)1:0.0194503,(((Hyphopichia homilentoma JCM 1507:0.231014,Hyphopichia burtonii NRRL Y-1933:0.195628)1:0.0539724,(Danielozyma ontarioensis NRRL YB-1246:0.28361,(Candida gotoi NRRL Y-27225:0.0656244,(Hyphopichia heimii NRRL Y-7502:0.0226493,Candida rhagii NRRL Y-2594:0.0238606)1:0.068766)1:0.157449)1:0.0369338)1:0.0713511,((Candida heveicola NRRL Y-48716:0.134205,_Candida_ auris:0.137532)1:0.207365,(Candida oregonensis NRRL Y-5850:0.222047,(((Candida intermedia JCM 1607:0.130323,Candida blattae NRRL Y-27698:0.127583)1:0.100258,(Clavispora lusitaniae:0.147865,Clavispora fructus NRRL Y-17072:0.15848)1:0.137841)1:0.0302907,((Candida wancherniae NRRL Y-48709:0.246543,(Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993:0.172847,Candida golubevii NRRL Y-48707:0.168165)1:0.0922754)1:0.0530619,(Candida hawaiiana:0.166731,(Metschnikowia kipukae UWOPS 00-669.2:0.116121,((Metschnikowia hibisci UWOPS 95-797.2:0.0472722,(Metschnikowia shivogae UWOPS 04-310.1:0.0168883,Metschnikowia aberdeeniae SUB 05-213.1:0.0146631)1:0.0315668)1:0.0981931,((Metschnikowia proteae:0.00747509,Metschnikowia drakensbergensis:0.00548386)1:0.0718813,((Metschnikowia arizonensis UWOPS 99-103.4:0.0768031,(Metschnikowia similis UWOPS 03-133.4:0.0158634,(Metschnikowia dekortorum:0.00848135,Metschnikowia bowlesiae:0.00946469)1:0.00906119)1:0.100881)1:0.019975,((Metschnikowia kamakouana UWOPS 04-112.5:0.0238126,(Metschnikowia hawaiiensis UWOPS 87-2203.2:0.0113058,(Metschnikowia hamakuensis UWOPS 04-199.1:0.0101785,Metschnikowia mauinuiana UWOPS 04-190.1:0.00865049)1:0.00277958)1:0.0283861)1:0.0126143,((Candida ipomoeae UWOPS 10-104.1:0.0100707,Metschnikowia borealis SUB 99-207.1:0.0167867)1:0.00210267,((Metschnikowia lochheadii UWOPS 99-661.1:0.00996666,(Metschnikowia matae var. matae UFMG-CM-Y391A:0.00424069,Metschnikowia matae var. maris UFMG-CM-Y397T:0.00348643)1:0.00958686)1:0.00918633,(Metschnikowia continentalis UWOPS 95-402.1:0.00666829,(Metschnikowia santaceciliae UWOPS 01-517a1:0.00622675,Metschnikowia cerradonensis:0.00638518)1:0.00224705)1:0.00605543)1:0.00228128)1:0.0140057)1:0.0477555)1:0.0216892)1:0.0216014)1:0.0448311)1:0.0790685)1:0.148907)1:0.104645)1:0.0330591)1:0.0346064)1:0.191308)1:0.0501198)1:0.0235663)1:0.0497414)1:0.249136)1:0.0750128)1:0.0732652)1:0.049717)1:0.219066)1:0.165959)1:0.126267)1:0.0731174)1:0.168976)1:0.15046)1:0.545914);\",\n \"r2t\" : \"(Schizosaccharomyces pombe:0.126204,(Saitoella complicata:0.0885746,((Arthrobotrys oligospora:0.0619566,(((Botrytis cinerea:0.0159599,Sclerotinia sclerotiorum:0.0144928)100:0.0963903,(Fusarium graminearum:0.0510591,(Neurospora crassa:0.0739745,Thermothelomyces heterothallicus:0.0683393)100:0.0362615)100:0.0584987)100:0.0447412,(((Zymoseptoria tritici:0.0711361,Passalora fulva:0.0715012)100:0.0977923,(Curvularia lunata:0.0396482,Parastagonospora nodorum:0.0402995)100:0.0997238)100:0.0445184,(Xylona heveae:0.0827906,(Coccidioides immitis:0.084686,(Aspergillus glaucus:0.0668904,(Aspergillus nidulans:0.0401227,Aspergillus oryzae:0.0447877)100:0.0146822)100:0.0489525)100:0.0540695)100:0.0225032)100:0.0234296)97:0.0417394)100:0.0878736,((Lipomyces japonicus NRRL Y-17848:0.083055,((Lipomyces suomiensis NRRL Y-17356:0.063608,Lipomyces oligophaga NRRL Y-17247:0.0762265)100:0.0217226,(Lipomyces doorenjongii NRRL Y-27504:0.0786482,(Lipomyces lipofer NRRL Y-11555:0.0650201,(Lipomyces kononenkoae NRRL Y-11553:0.0459803,((Lipomyces starkeyi NRRL Y-11557:0.00681505,Lipomyces starkeyi:0.00528117)100:0.0119879,(Lipomyces mesembrius NRRL Y-27506:0.0232923,Lipomyces arxii NRRL Y-17921:0.0349869)100:0.00929258)100:0.0178152)100:0.0224125)100:0.0117255)100:0.0112742)100:0.0161427)100:0.0443967,(((Trigonopsis variabilis NRRL Y-1579:0.0918385,Trigonopsis vinaria NRRL Y-5715:0.0778916)100:0.0634075,(Botryozyma nematodophila NRRL Y-17705:0.126145,(Tortispora starmeri NRRL Y-63665:0.0822969,(Tortispora caseinolytica NRRL Y-17796:0.0293182,Tortispora ganteri NRRL Y-17035:0.0348557)100:0.0511304)100:0.0413347)100:0.0281241)100:0.0197302,(((Middelhovenomyces tepae NRRL Y-17670:0.111319,((Galactomyces candidus Phaff 72-186:0.0669059,(Dipodascus geniculatus NRRL Y-17628:0.0585418,Dipodascus albidus NRRL Y-12859:0.0802071)100:0.032647)100:0.0352005,((Saprochaete clavata:0.0573717,(Magnusiomyces capitatus:0.0225681,Magnusiomyces capitatus:0.00343673)100:0.0266914)100:0.0426538,(Magnusiomyces tetrasperma NRRL Y-7288:0.0909393,(Magnusiomyces ingens:0.00426038,Magnusiomyces ingens:0.00454468)100:0.0594328)100:0.0145665)100:0.037234)100:0.0271195)100:0.0160277,(((Candida incommunis NRRL Y-17085:0.0714356,Deakozyma indianensis NRRL YB-1937:0.0665043)100:0.0862172,((Wickerhamiella infanticola DS02:0.112297,Wickerhamiella cacticola NRRL Y-27362:0.121855)100:0.0593741,(Candida hispaniensis NRRL Y-5580:0.0908408,((Yarrowia sp. JCM 30694:0.00421429,Yarrowia bubula NRRL Y-63668:0.0066085)100:0.0141797,((Yarrowia deformans JCM 1694:0.00474947,Yarrowia divulgata NRRL Y-63741:0.00788674)100:0.00896605,(Yarrowia lipolytica:0.00855678,(Yarrowia sp. JCM 30696:0.00457866,(Yarrowia sp. JCM 30695:0.00109815,Yarrowia keelungensis JCM 14894:0.000746909)100:0.00339822)100:0.00776074)100:0.0030877)100:0.00797457)100:0.0687327)100:0.084079)99:0.0269638)99:0.0226604,(((Groenewaldozyma salmanticensis NRRL Y-17090:0.11507,(Zygoascus ofunaensis NRRL Y-10998:0.0905002,(Zygoascus hellenicus NRRL Y-7136:0.0177705,Zygoascus meyerae NRRL Y-17319:0.033743)100:0.0524429)100:0.0360027)100:0.0174588,((Spencermartinsiella europaea NRRL Y-48265:0.0911582,Diddensiella caesifluorescens NRRL Y-48781:0.0884185)100:0.0161105,(Sugiyamaella valdiviana:0.0815797,(Sugiyamaella americana NRRL YB-2067:0.0856077,Sugiyamaella lignohabitans CBS 10342:0.0351246)100:0.0195916)100:0.0261745)100:0.0136807)100:0.0169933,(Blastobotrys muscicola NRRL Y-7993:0.11487,((Blastobotrys mokoenaii NRRL Y-27120:0.0956722,(Blastobotrys attinorum Y-27639:0.0521706,(Blastobotrys nivea NRRL Y-17581:0.0858854,Blastobotrys proliferans NRRL Y-17577:0.0888617)100:0.0122257)100:0.014012)100:0.0192743,(Blastobotrys serpentis NRRL Y-48249:0.10963,((Blastobotrys americana NRRL Y-6844:0.0632957,Blastobotrys peoriensis NRRL YB-2290:0.056484)100:0.0312416,(Blastobotrys adeninivorans:0.0201089,Blastobotrys raffinosifermentans:0.016445)100:0.0638897)100:0.0369131)100:0.0165191)100:0.0160658)100:0.0187613)100:0.0218206)99:0.0218424)99:0.0323467,((Nadsonia fulvescens NRRL Y-12810:0.0431276,Nadsonia fulvescens var. elongata DSM 6958:0.0290928)100:0.100074,((Alloascoidea hylecoeti JCM 7604:0.142779,(Sporopachydermia lactativora NRRL Y-11591:0.0716173,Sporopachydermia quercuum JCM 9486:0.060207)100:0.0533148)77:0.0184655,(((Ascoidea asiatica JCM 7603:0.0909876,Ascoidea rubescens:0.0923764)100:0.0555868,(Saccharomycopsis fermentans NRRL Y-17710:0.0670507,(Saccharomycopsis malanga JCM 7620:0.0537866,Saccharomycopsis capsularis NRRL Y-17639:0.0726377)100:0.0293327)100:0.0505221)100:0.0351169,((((Candida ponderosae NRRL YB-2307:0.116821,(Starmera quercuum NRRL YB-4281:0.0867524,(Candida stellimalicola NRRL Y-17912:0.0710683,Starmera amethionina NRRL Y-10978:0.0660149)100:0.038032)100:0.024918)91:0.0146313,((Wickerhamomyces anomalus:0.0497049,Wickerhamomyces ciferrii NRRL Y-1031:0.0512548)100:0.0264792,(((Wickerhamomyces alni NRRL Y-11625:0.0754478,(Wickerhamiella azyma NRRL Y-17067:0.0310146,Wickerhamomyces canadensis NRRL Y-1888:0.0326725)100:0.0453877)100:0.0288606,(Wickerhamomyces bovis NRRL YB-4184:0.083978,((Barnettozyma hawaiiensis NRRL Y-27270:0.0506112,(Barnettozyma populi NRRL Y-12728:0.0521714,Barnettozyma californica NRRL Y-17395:0.0407995)100:0.00921085)100:0.0371517,((Barnettozyma pratensis NRRL Y-12696:0.0622423,Barnettozyma salicaria NRRL Y-6780:0.069559)100:0.0123131,(Candida montana NRRL Y-17326:0.0751889,((Candida orba NRRL Y-27336:0.0339559,Phaffomyces thermotolerans NRRL Y-11709:0.0339438)100:0.0210789,(Phaffomyces antillensis NRRL Y-12881:0.0392326,Phaffomyces opuntiae NRRL Y-11707:0.0320823)100:0.0209823)100:0.0419267)100:0.0220956)100:0.0105821)100:0.0313017)100:0.0153705)100:0.0180182,((Wickerhamomyces hampshirensis NRRL YB-4128:0.0842166,Candida freyschussii:0.0702627)100:0.0145882,(((Cyberlindnera xylosilytica NRRL YB-2097:0.0615196,Cyberlindnera fabianii JCM 3601:0.0530417)100:0.011541,(Cyberlindnera petersonii NRRL YB-3808:0.0626946,(Candida mycetangii NRRL Y-6843:0.0582128,Cyberlindnera americana NRRL Y-2156:0.0598929)100:0.0114685)100:0.0159979)100:0.0264469,((Cyberlindnera maclurae NRRL Y-5377:0.0526604,Cyberlindnera misumaiensis NRRL Y-17389:0.0442506)100:0.0440499,(Cyberlindnera jadinii NRRL Y-1542:0.0725383,(Candida vartiovaarae:0.0625927,(Cyberlindnera mrakii NRRL Y-1364:0.0367754,(Cyberlindnera saturnus NRRL Y-17396:0.0287399,Cyberlindnera suaveolens NRRL Y-17391:0.0232996)100:0.0160669)100:0.0292767)100:0.0102841)100:0.0092162)100:0.0263359)100:0.0154825)100:0.0219838)100:0.0164339)95:0.0119649)100:0.0468189,((Saccharomycodes ludwigii UTAD17:0.114355,((Hanseniaspora vineae:0.0341913,Hanseniaspora osmophila NRRL Y-1613:0.0381317)100:0.0685352,((Hanseniaspora singularis:0.0663886,Hanseniaspora valbyensis NRRL Y-1626:0.0517474)100:0.0155812,(Kloeckera hatyaiensis:0.0523116,(Hanseniaspora pseudoguilliermondii:0.0562921,(Hanseniaspora uvarum:0.0346921,Hanseniaspora clermontiae NRRL Y-27515:0.0475276)100:0.0145255)100:0.0211695)100:0.0279143)100:0.114557)100:0.0384264)100:0.0348094,(((((Eremothecium cymbalariae DBVPG 7215:0.0482528,Eremothecium gossypii ATCC 10895:0.0869488)100:0.0173328,(Eremothecium sinecaudum ATCC 58844:0.0547745,Eremothecium coryli CBS 5749:0.0443996)55:0.00927931)100:0.0479904,(Kluyveromyces aestuarii NRRL YB-4510:0.0661155,(Kluyveromyces marxianus CBS6556:0.0381194,(Kluyveromyces dobzhanskii NRRL Y-1974:0.0402393,Kluyveromyces lactis NRRL Y-1140:0.0242856)100:0.0197354)100:0.0335599)100:0.051824)100:0.0229944,(Lachancea kluyveri:0.0625351,((Lachancea cidri:0.185105,Lachancea mirantina:0.119783)99:0.0288772,((Lachancea dasiensis:0.1214,(Lachancea waltii:0.00819208,(Lachancea meyersii CBS 8951:0.183661,Lachancea nothofagi:0.158248)92:0.0175256)35:0.000265047)81:0.0265036,(Lachancea lanzarotensis CBS 12615:0.0483696,(Lachancea quebecensis:0.0129892,(Lachancea thermotolerans CBS 6340:0.00142213,Lachancea thermotolerans:0.00168073)100:0.00945148)100:0.0453357)95:0.0251145)61:0.0240587)100:0.0154712)100:0.0115994)100:0.0190621,((((Zygosaccharomyces kombuchaensis NRRL YB-4811:0.046758,(Zygosaccharomyces bisporus NRRL Y-12626:0.0360355,Zygosaccharomyces bailii:0.0398601)100:0.0121151)100:0.0202831,(Zygosaccharomyces sapae:0.0121896,(Zygosaccharomyces rouxii v1:0.00340107,Zygosaccharomyces rouxii:0.00320738)100:0.00810975)100:0.0509075)100:0.0714314,((Torulaspora microellipsoides:0.0475723,(Zygotorulaspora florentina NRRL Y-1560:0.0483917,Zygotorulaspora mrakii NRRL Y-12654:0.055265)100:0.0283279)99:0.00902968,(Torulaspora maleeae CBS 10694:0.052034,(Torulaspora delbrueckii:0.0233883,(Torulaspora franciscae NRRL Y-17532:0.0262398,Torulaspora pretoriensis NRRL Y-17251:0.0244877)100:0.0186046)100:0.018761)100:0.0240214)100:0.0161415)100:0.0295256,(((Tetrapisispora blattae:0.0525052,Yueomyces sinensis NRRL Y-17406:0.099179)100:0.0421829,(Vanderwaltozyma polyspora:0.0729678,(Tetrapisispora iriomotensis NRRL Y-27309:0.0560405,(Tetrapisispora phaffii CBS 4417:0.0338951,(Tetrapisispora fleetii NRRL Y-27350:0.0348304,Tetrapisispora namnaoensis NRRL Y-27982:0.0327815)100:0.0179)100:0.0198241)100:0.048753)100:0.0314575)100:0.0246669,((Naumovozyma castellii:0.0505552,(((Kazachstania africana CBS 2517:0.0646844,(Kazachstania viticola NRRL Y-27206:0.0759366,Kazachstania martiniae NRRL Y-409:0.0521419)100:0.0130001)97:0.0077118,((Kazachstania rosinii NRRL Y-17919:0.0596281,Kazachstania spencerorum NRRL Y-17920:0.0768462)100:0.0126981,(Kazachstania turicensis NRRL Y-48834:0.0431203,Kazachstania kunashirensis NRRL Y-27209:0.0559373)100:0.0293573)100:0.0207873)97:0.0114597,(Kazachstania intestinalis NRRL Y-48847:0.0833165,(Kazachstania bromeliacearum NRRL Y-48836:0.079683,((Kazachstania taianensis NRRL Y-48846:0.078128,Kazachstania naganishii CBS 8797:0.0939904)100:0.0218932,((Kazachstania yakushimaensis NRRL Y-48837:0.0243461,Kazachstania transvaalensis NRRL Y-17245:0.0430026)100:0.0585229,(Kazachstania siamensis NRRL Y-48842:0.0457349,(Kazachstania unispora NRRL Y-1556:0.0380544,(Kazachstania solicola NRRL Y-27207:0.0275766,Kazachstania aerobia NRRL Y-27976:0.0259698)100:0.024771)100:0.0190303)100:0.0346524)100:0.0155365)100:0.010997)100:0.0149155)97:0.0121949)100:0.0163685)100:0.0115806,(((Nakaseomyces bacillisporus CBS 7720:0.0602697,_Candida_ castellii CBS 4332:0.0552284)100:0.0196278,(_Candida_ glabrata CBS 138:0.0400934,(_Candida_ bracarensis CBS 10154:0.0249734,(_Candida_ nivariensis CBS 9983:0.0220311,Nakaseomyces delphensis CBS 2170:0.029392)100:0.00532474)100:0.016744)100:0.0575278)100:0.0195602,(Lachancea fermentati:0.180518,(((Saccharomyces bayanus NBRC1948:0.00599558,(Saccharomyces eubayanus:0.0311309,(Saccharomyces pastorianus CBS 1503:0.0081642,Saccharomyces pastorianus CBS 1513:0.0041158)100:0.00354016)100:0.00386148)100:0.0060333,(Candida norvegica:0.0339226,(Saccharomyces bayanus CBS 7001:0.0182511,(Saccharomyces bayanus 623-6C CBS 7001:0.00237523,Saccharomyces uvarum:0.00363307)100:0.00208439)100:0.00457913)100:0.00367531)100:0.0171416,(Saccharomyces arboricola:0.0257175,(Saccharomyces kudriavzevii:0.0231824,((Saccharomyces jurei:0.00897546,(Saccharomyces mikatae IFO 1815:0.00132382,Saccharomyces mikatae:0.00400149)100:0.00689138)100:0.0136218,(Saccharomyces cerevisiae x Saccharomyces kudriavzevii x Saccharomyces uvarum CBS 2834:0.00682362,(Saccharomyces cerevisiae x Saccharomyces kudriavzevii:0.00517659,((Saccharomyces cerevisiae x Saccharomyces eubayanus Hybrid H1:0.00776694,(Saccharomyces pastorianus VTT A-63015:0.00325668,Saccharomyces pastorianus Weihenstephan 34/70:0.0116326)100:0.00241464)100:0.0019361,((Saccharomyces cerevisiae Vin13:0.00163674,((Saccharomyces cerevisiae x Saccharomyces mikatae:0.00797371,(Saccharomyces cerevisiae FostersO:0.00307742,(Saccharomyces paradoxus:0.0129436,Saccharomyces cerevisiae x Saccharomyces paradoxus DBVPG1373xZ1:0.00341844)100:0.00492533)99:0.00226386)88:0.000728143,(Ogataea polymorpha RB11:0.000245516,((Candida tropicalis CBS 94:0.000399229,Ogataea polymorpha CBS 4732:0.000452355)100:0.000174036,((Zygosaccharomyces rouxii CBS 732:0.000356679,Lachancea thermotolerans CBS 6340:0.000527001)87:0.000158257,(Millerozyma farinosa CBS 7064:0.000250795,(Kluyveromyces marxianus CBS 712:0.000321026,(Saccharomyces cerevisiae S288C:0.000481844,Saccharomyces cerevisiae AWRI796:0.00294417)100:0.000752871)98:0.000129624)100:0.000812457)79:6.41111e-05)78:0.000115355)100:0.00113339)88:0.000426612)88:0.000745475,(Candida gropengiesseri:0.00398597,(Candida batistae:0.00191938,((Wickerhamiella domercqiae:0.0731683,Wickerhamiella versatilis JCM 5958:0.0917899)100:0.0201985,((Candida stellata:0.0447414,(Candida davenportii:0.0883913,Starmerella bacillaris NP2:0.0706162)100:0.0389893)100:0.0266105,((Starmerella bombicola JCM 9596:0.085771,(Candida bombi:0.0676886,Candida apicola NRRL Y-50540:0.0505998)100:0.0206182)100:0.0320175,(Candida geochares:0.0607001,(Candida sorbosivorans:0.0414339,(Wickerhamiella galacta:0.00713286,Candida magnoliae:0.0215597)100:0.016667)100:0.00941328)100:0.0286677)100:0.0198253)100:0.0223772)100:0.106092)100:0.00330585)100:0.00340044)88:0.000881557)94:0.0026942)94:0.00647231)94:0.00702113)100:0.00371471)100:0.00556456)100:0.00752715)100:0.0530619)100:0.0292997)100:0.015258)100:0.0168147)100:0.0146565)100:0.0355872)100:0.027864)100:0.102054)100:0.0402833,(((Pachysolen tannophilus NRRL Y-2460:0.0808212,((Peterozyma xylosa NRRL Y-12939:0.0413235,Peterozyma toletana NRRL YB-4247:0.0363934)100:0.079557,(Nakazawaea peltata JCM 9829:0.0790579,(Nakazawaea holstii NRRL Y-2155:0.076221,Nakazawaea wickerhamii NRRL Y-2563:0.0830923)100:0.0236035)100:0.0313818)100:0.0167062)100:0.0309597,(((Citeromyces siamensis NRRL Y-27975:0.0596415,(Citeromyces hawaiiensis NRRL Y-11581:0.0404304,Citeromyces matritensis NRRL Y-2407:0.0405154)100:0.0300409)100:0.0722959,((Komagataella populi NRRL YB-455:0.00452192,Komagataella pseudopastoris NRRL Y-27603:0.00450592)100:0.0174026,(Komagataella pastoris:0.00889631,(Komagataella phaffii:0.000148318,(Komagataella phaffii GS115:4.69073e-05,Komagataella phaffii:0.000106001)100:7.7985e-05)100:0.00811704)100:0.0144677)100:0.140854)100:0.0285972,((Kuraishia ogatae NRRL Y-48474:0.0914258,(Kuraishia molischiana NRRL Y-27899:0.0581477,Kuraishia capsulata:0.0467181)100:0.0478643)100:0.0195164,(Candida boidinii JCM 9604:0.110969,(((Candida succiphila JCM 9445:0.0886966,Ogataea naganishii NRRL Y-7654:0.0959386)100:0.0167412,(Ogataea methylivora NRRL Y-17250:0.0855903,Ogataea ramenticola NRRL YB-1985:0.0987928)100:0.0178331)100:0.0227408,((((Ogataea pilisensis NRRL Y-27598:0.066275,Ogataea nitratoaversa NRRL Y-48449:0.0642773)100:0.028961,(Candida arabinofermentans NRRL YB-2248:0.0849656,(Ogataea trehalophila NRRL Y-6781:0.0487782,Ogataea methanolica JCM 10240:0.0493589)100:0.0293327)100:0.0140467)100:0.0279201,(Ogataea trehaloabstinens NRRL Y-27595:0.099808,((Ogataea zsoltii NRRL Y-27601:0.0533496,(Ogataea glucozyma NRRL YB-2185:0.0502725,(Ogataea henricii NRRL YB-2194:0.0474431,(Ogataea pini NRRL Y-11528:0.000173811,Ogataea populi-albae NRRL Y-48632:0.000238677)100:0.0473245)100:0.0117949)100:0.010016)100:0.0313845,((Ogataea nonfermentans NRRL YB-2203:0.0463412,Ogataea minuta NRRL Y-411:0.0528823)100:0.0269107,(Ogataea philodendri NRRL Y-7210:0.0685447,(Ogataea kodamae NRRL Y-17234:0.0684285,(Ogataea parapolymorpha:0.019301,(Ogataea angusta:0.00598477,Ogataea polymorpha NCYC 495 leu1.1:0.000116775)100:0.00806111)100:0.0330794)100:0.0111215)100:0.0117704)100:0.0279163)100:0.0145388)100:0.0167219)100:0.0177219,((Ambrosiozyma maleeae NRRL Y-63635:0.0833518,((Ambrosiozyma kashinagacola JCM 15019:0.0693266,(Ambrosiozyma pseudovanderkliftii NRRL Y-63632:0.0577148,Ambrosiozyma vanderkliftii NRRL Y-63633:0.0566447)100:0.0243184)100:0.0165422,(Ambrosiozyma monospora JCM 7599:0.0768011,(Ambrosiozyma oregonensis NRRL Y-6106:0.0577061,(Ambrosiozyma philentoma NRRL Y-7523:0.0407241,Ambrosiozyma ambrosiae NRRL Y-7524:0.058601)95:0.0150731)100:0.0404117)100:0.0150307)100:0.0199196)100:0.0274069,((Candida sp. JCM 15000:0.0941246,(Brettanomyces custersianus NRRL Y-6653:0.086231,(Brettanomyces anomalus:0.0318015,(Brettanomyces bruxellensis:0.000593528,(Brettanomyces bruxellensis CBS 2499:0.00109505,Brettanomyces bruxellensis:0.00264587)100:0.000384652)100:0.0247517)100:0.0615694)100:0.0521429)100:0.0778521,((Kregervanrija fluxuum NRRL YB-4273:0.0374345,Kregervanrija delftensis NRRL Y-7119:0.0405164)100:0.0638635,((Martiniozyma abiesophila NRRL Y-11514:0.109633,((Saturnispora silvae NRRL Y-6725:0.0831621,Saturnispora mendoncae NRRL Y-11515:0.067902)100:0.0265947,(Saturnispora saitoi NRRL Y-6671:0.0588065,(Saturnispora zaruensis NRRL Y-7008:0.0528894,(Saturnispora dispora NRRL Y-1447:0.0370446,(Saturnispora hagleri NRRL Y-27828:0.0255079,Saturnispora serradocipensis NRRL Y-48717:0.0340521)100:0.0169599)100:0.0125902)100:0.0247621)100:0.0299834)100:0.0367605)100:0.0308369,((Pichia terricola NRRL YB-4310:0.074898,Candida sorboxylosa JCM 1536:0.0758895)100:0.0245451,((Candida californica:0.0648764,(Pichia membranifaciens NRRL Y-2026:0.0243445,Pichia membranifaciens KS47-1:0.0209896)100:0.0311224)59:0.0177483,((Pichia norvegensis NRRL Y-7687:0.0887783,Pichia kudriavzevii:0.082125)100:0.0177134,((Pichia nakasei NRRL Y-7686:0.067107,Pichia heedii NRRL Y-10967:0.0588032)100:0.0369725,(Pichia occidentalis NRRL Y-7552:0.0675481,Pichia exigua NRRL Y-10920:0.0755201)59:0.0151337)59:0.0107938)59:0.0109712)100:0.0124365)100:0.0326334)100:0.0231644)100:0.0331026)100:0.0335554)100:0.0176088)100:0.0289504)99:0.0137276)100:0.034821)100:0.0193198)100:0.0237829)100:0.0278153,(Babjeviella inositovora NRRL Y-12698:0.0830192,((Cephaloascus fragrans:0.0569461,Cephaloascus albidus:0.0718853)100:0.0346833,((Candida schatavii NRRL Y-17078:0.091576,(Candida fragi NRRL Y-17910:0.0453009,Kurtzmaniella cleridarum NRRL Y-48386:0.0568199)100:0.0648921)100:0.0253452,((((Candida ascalaphidarum NRRL Y-27908:0.098612,Diutina catenulata:0.148142)95:0.0200365,(Candida athensensis NRRL Y-27644:0.0392514,((Meyerozyma guilliermondii:0.000908622,Meyerozyma guilliermondii ATCC 6260:0.00309795)100:0.0101255,(Meyerozyma caribbica:0.009389,Candida carpophila JCM 9396:0.00717367)100:0.00816186)100:0.0269725)100:0.0762289)92:0.0167428,((Candida tammaniensis NRRL Y-8257:0.0674796,Candida gorgasii NRRL Y-27707:0.0694565)100:0.0285249,(Yamadazyma scolyti NRRL Y-5512:0.0774375,(Candida aaseri SH-14:0.0654444,((Yamadazyma laniorum yHMH7:0.0417828,Yamadazyma tenuis:0.0402424)100:0.0282539,(Yamadazyma nakazawae NRRL Y-7903:0.0408872,Yamadazyma philogaea NRRL Y-7813:0.0504395)100:0.0356588)100:0.0194215)100:0.0124815)100:0.0205036)100:0.0585866)77:0.0121471,(((Priceomyces carsonii NRRL YB-4275:0.0773801,(Priceomyces medius NRRL Y-7122:0.0599315,(Priceomyces castillae NRRL Y-7501:0.0479101,Priceomyces haplophilus JCM 1635:0.0517119)100:0.0177603)100:0.0293383)100:0.0429337,(Millerozyma acaciae JCM 10732:0.0740945,(Debaryomyces maramus NRRL Y-2171:0.0742901,((Debaryomyces hansenii:0.0094309,Debaryomyces tyrocola:0.00741868)100:0.0123071,(Debaryomyces fabryi NRRL Y-17914:0.0115779,(Debaryomyces hansenii J6:0.00478424,(Debaryomyces subglobosus NRRL Y-6666:0.00307223,(Debaryomyces prosopidis NRRL Y-27369:0.0266364,Debaryomyces nepalensis NRRL Y-7108:0.0590941)100:0.0214071)100:0.0162527)100:0.0127128)100:0.00837282)100:0.0302908)100:0.0281444)100:0.0204554)98:0.014532,((((Wickerhamia fluorescens JCM 1821:0.0804346,(Teunomyces gatunensis NRRL Y-48064:0.0543253,(Teunomyces kruisii NRRL Y-17087:0.0250798,Teunomyces cretensis NRRL Y-27777:0.0295176)100:0.0240266)100:0.0384231)100:0.0131621,((Aciculoconidium aculeatum NRRL YB-4298:0.0837536,(Kodamaea laetipori NRRL Y-27713:0.0636316,(Kodamaea ohmeri NRRL Y-1932:0.0490485,Candida restingae NRRL Y-27358:0.0479262)100:0.0351338)100:0.0169767)100:0.0342227,(Suhomyces pyralidae NRRL Y-27085:0.0720593,((Suhomyces canberraensis NRRL YB-2417:0.0513793,Suhomyces emberorum NRRL Y-27606:0.0573297)100:0.013494,(Suhomyces tanzawaensis:0.000172874,Suhomyces tanzawaensis NRRL Y-17324:0.000124577)100:0.0429432)100:0.0187886)100:0.0236942)100:0.0114544)100:0.012213,(((Scheffersomyces lignosus JCM 9837:0.0282656,Scheffersomyces shehatae ATY839:0.0176242)100:0.034077,(Scheffersomyces stipitis:0.000518897,Scheffersomyces stipitis NRRL Y-7124:0.00119922)100:0.0475992)100:0.0326218,(((Spathaspora gorwiae UFMG-CM-Y312:0.0172059,Spathaspora sp.:0.017776)100:0.0470127,(Spathaspora arborariae:0.0407776,(Spathaspora sp.:0.0365321,(Spathaspora passalidarum NRRL Y-27907:0.000681504,(Spathaspora passalidarum:0.00100702,Spathaspora passalidarum:0.000326132)100:0.00040554)100:0.0255792)100:0.0120683)100:0.040913)100:0.0204885,((Candida corydali NRRL Y-27910:0.0859408,(Lodderomyces elongisporus:0.0706966,(Candida metapsilosis:0.0259618,(Candida orthopsilosis:0.0216995,Candida parapsilosis:0.0233949)100:0.00841778)100:0.0372902)100:0.0291739)100:0.0147675,((Candida sojae GF41:0.0310027,Candida tropicalis ATCC 200956 MY1012:0.0110004)100:0.0223129,(Candida dubliniensis CD36:0.0709642,(Naumovozyma dairenensis:0.00144647,(Candida albicans WO-1:0.00123288,Candida albicans:0.00103971)100:0.000641177)100:0.0102161)100:0.0290815)100:0.0324332)100:0.0267713)100:0.0394725)95:0.0128346)95:0.02227,(((Hyphopichia homilentoma JCM 1507:0.0587536,Hyphopichia burtonii NRRL Y-1933:0.0713047)100:0.016959,(Danielozyma ontarioensis NRRL YB-1246:0.0873366,(Candida gotoi NRRL Y-27225:0.0455032,(Candida rhagii NRRL Y-2594:0.0222124,Hyphopichia heimii NRRL Y-7502:0.0224423)100:0.0230844)100:0.0392466)100:0.0145792)100:0.0209346,((_Candida_ auris:0.0455892,(Candida heveicola NRRL Y-48716:0.0410977,Candida pseudohaemulonis B12108:0.0394728)100:0.0226688)100:0.0469312,((Candida oregonensis NRRL Y-5850:0.0865896,((Candida intermedia JCM 1607:0.042487,Candida blattae NRRL Y-27698:0.0530799)100:0.0238467,(Clavispora fructus NRRL Y-17072:0.0576833,Clavispora lusitaniae:0.0491396)100:0.0272481)100:0.0102521)96:0.0107527,(Metschnikowia bicuspidata:0.104942,((Candida wancherniae NRRL Y-48709:0.0784867,(Candida golubevii NRRL Y-48707:0.0554815,(Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993:0.0413189,(Metschnikowia fructicola:0.0157945,Metschnikowia fructicola:0.0148367)100:0.0299732)100:0.0118293)100:0.0209009)100:0.0131789,((Metschnikowia drosophilae UWOPS83-1135.3:0.021045,Candida torresii CBS 5152:0.0230134)100:0.0543554,((Metschnikowia orientalis UWOPS99-745.6:0.0433538,Candida hawaiiana:0.0375214)100:0.0152737,(Metschnikowia sp. M2Y3 EBD-CdV M2Y3:0.0331658,((Metschnikowia kipukae UWOPS 00-669.2:0.0297972,(Metschnikowia hibisci UWOPS 95-797.2:0.0265758,(Metschnikowia aberdeeniae SUB 05-213.1:0.0117725,Metschnikowia shivogae UWOPS 04-310.1:0.0110661)100:0.0119074)100:0.015541)58:0.00570717,((Metschnikowia proteae:0.0057267,Metschnikowia drakensbergensis:0.0055943)100:0.0241508,(((Metschnikowia arizonensis UWOPS 99-103.4:0.0370555,Metschnikowia colocasiae UWOPS 03-202.1:0.0171738)93:0.00452229,(Metschnikowia sp. 03-147.1 UWOPS 03-147.1:0.0208946,(Metschnikowia similis UWOPS 03-133.4:0.0111303,(Metschnikowia dekortorum:0.00697665,Metschnikowia bowlesiae:0.00921332)100:0.00571605)100:0.023746)93:0.00417948)100:0.00628612,((Metschnikowia hawaiiensis UWOPS 87-2203.2:0.0301812,Metschnikowia sp. 04-218.3 UWOPS 04-218.3:0.0150044)100:0.0108385,((Metschnikowia lochheadii UWOPS 99-661.1:0.00971309,(Metschnikowia matae var. matae UFMG-CM-Y391A:0.00687815,Metschnikowia matae var. maris UFMG-CM-Y397T:0.00685245)100:0.00661365)100:0.00543424,((Metschnikowia sp. 04-226.1 UWOPS 04-226.1:0.00877917,(Metschnikowia continentalis UWOPS 95-402.1:0.00829922,(Metschnikowia santaceciliae UWOPS 01-517a1:0.00694966,Metschnikowia cerradonensis:0.00643801)100:0.0022256)100:0.00393078)100:0.00346672,((Metschnikowia cubensis MUCL 45751:0.0116299,Metschnikowia sp. 01-655c1 UWOPS 01-655c1:0.010726)100:0.00475537,(Candida ipomoeae UWOPS 10-104.1:0.0120555,(Metschnikowia borealis SUB 99-207.1:0.00434673,Metschnikowia sp. 13-106.1 UWOPS 13-106.1:0.0046889)100:0.0079509)100:0.00239546)100:0.00300571)100:0.00344102)100:0.00898957)100:0.0120361)100:0.00782286)100:0.00621084)58:0.0061066)100:0.0152811)100:0.0320067)56:0.00960016)100:0.0151264)100:0.014359)99:0.0138301)100:0.0445971)100:0.014915)94:0.00905625)92:0.0102603)100:0.0178837)100:0.0562855)100:0.0243772)100:0.0198609)100:0.0259199)57:0.0176658)100:0.0501942)100:0.045588)99:0.0241612)100:0.0456527)100:0.0313927)100:0.0580377)100:0.0449143)1:0.126204);\",\n \"LRF1\" : \"((((((((((((((((((TP53_AmelENSAMEP00000017825:0.0263[&&NHX:D=N:T=9646],TP53_MpfuENSMPUP00000008945:0.066538[&&NHX:D=N:T=9669])speciation:0.032561[&&NHX:D=N:B=99:T=379584:DD=],TP53_CfamENSCAFP00000024579:0.086484[&&NHX:D=N:T=9615])speciation:0.034068[&&NHX:D=N:B=81:T=379584:DD=],TP53_FcatENSFCAP00000008925:0.06619[&&NHX:D=N:T=9685])speciation:0.025911[&&NHX:D=N:B=31:T=33554:DD=],TP53_EcabENSECAP00000006210:0.04971[&&NHX:D=N:T=9796])speciation:0.01224[&&NHX:D=N:T=314145:B=17:DD=],(((TP53_BtauENSBTAP00000001420:0.043108[&&NHX:D=N:T=9913],TP53_OariENSOARP00000016707:0.049064[&&NHX:D=N:T=9940])speciation:0.055294[&&NHX:D=N:B=98:T=9895:DD=],TP53_TtruENSTTRP00000009721:0.022529[&&NHX:D=N:T=9739])speciation:0.022515[&&NHX:D=N:T=91561:B=39:DD=],TP53_SscrENSSSCP00000019016:0.065797[&&NHX:D=N:T=9823])speciation:0.020972[&&NHX:D=N:T=91561:B=35:DD=])speciation:0.006996[&&NHX:D=N:B=9:T=314145:DD=],TP53_SaraENSSARP00000005616:0.149927[&&NHX:D=N:T=42254])speciation:0.013221[&&NHX:D=N:T=314145:B=7:DD=],TP53_PvamENSPVAP00000015400:0.117578[&&NHX:D=N:T=132908])speciation:0.0[&&NHX:D=N:B=1:T=314145:DD=],((ENSMLUG00000006411_MlucENSMLUP00000005861:0.003702[&&NHX:D=N:T=59463],ENSMLUG00000025140_MlucENSMLUP00000016733:0.12569[&&NHX:D=N:T=59463])duplication:0.131525[&&NHX:D=Y:T=59463:B=100],TP53_EeurENSEEUP00000013295:0.183463[&&NHX:D=N:T=9365])speciation:0.042602[&&NHX:D=N:T=314145:B=33:DD=])duplication:0.018327[&&NHX:DD=Y:T=314145:B=0:D=],(((((Trp53_MmusENSMUSP00000104298:0.002681[&&NHX:D=N:T=10090],Trp53_MsspMGP_SPRETEiJ_P0028933:0.017851[&&NHX:D=N:T=10096])speciation:0.064969[&&NHX:D=N:B=100:T=862507:DD=],Tp53_RnorENSRNOP00000074031:0.079068[&&NHX:D=N:T=10116])speciation:0.12872[&&NHX:D=N:T=39107:B=100:DD=],LOC100910954_RnorENSRNOP00000064177:0.056502[&&NHX:D=N:T=10116])duplication:0.0[&&NHX:D=Y:B=5:T=39107],TP53_OpriENSOPRP00000005906:0.185911[&&NHX:D=N:T=9978])speciation:0.0[&&NHX:D=N:T=314147:B=0:DD=],((((TP53_MmurENSMICP00000039812:0.054544[&&NHX:D=N:T=30608],TP53_OgarENSOGAP00000015106:0.095719[&&NHX:D=N:T=30611])duplication:0.012762[&&NHX:D=N:B=52:T=376911:DD=],((((((TP53_HsapENSP00000269305:0.0[&&NHX:D=N:T=9606],TP53_GgorENSGGOP00000009561:0.002907[&&NHX:D=N:T=9595])speciation:0.001345[&&NHX:D=N:B=61:T=207598:DD=],TP53_PtroENSPTRP00000014836:0.000592[&&NHX:D=N:T=9598])speciation:0.00877[&&NHX:D=N:B=61:T=207598:DD=],TP53_PabeENSPPYP00000008923:0.009552[&&NHX:D=N:T=9601])speciation:4.8e-05[&&NHX:D=N:T=9604:B=100:DD=],TP53_NleuENSNLEP00000011861:0.032229[&&NHX:D=N:T=61853])speciation:0.004444[&&NHX:D=N:T=314295:B=97:DD=],((TP53_PanuENSPANP00000019643:0.007102[&&NHX:D=N:T=9555],TP53_CsabENSCSAP00000007551:0.010543[&&NHX:D=N:T=60711])speciation:0.000953[&&NHX:D=N:B=100:T=9528:DD=],TP53_MmulENSMMUP00000035274:0.043449[&&NHX:D=N:T=9544])speciation:0.019535[&&NHX:D=N:T=9528:B=55:DD=])speciation:0.013822[&&NHX:D=N:T=9526:B=52:DD=],TP53_CjacENSCJAP00000027663:0.047099[&&NHX:D=N:T=9483])speciation:0.027286[&&NHX:D=N:B=57:T=314293:DD=])speciation:0.013265[&&NHX:D=N:T=9443:B=4:DD=],TP53_TbelENSTBEP00000010189:0.222843[&&NHX:D=N:T=37347])speciation:0.008121[&&NHX:D=N:B=0:T=314146:DD=],((TP53_ItriENSSTOP00000019678:0.08339[&&NHX:D=N:T=43179],Tp53_CporENSCPOP00000012841:0.120892[&&NHX:D=N:T=10141])speciation:0.018406[&&NHX:D=N:T=9989:B=42:DD=],(ENSOCUG00000001138_OcunENSOCUP00000000989:0.013142[&&NHX:D=N:T=9986],ENSOCUG00000022109_OcunENSOCUP00000025959:0.090881[&&NHX:D=N:T=9986])duplication:0.069194[&&NHX:D=Y:T=9986:B=97])speciation:0.015339[&&NHX:D=N:T=314147:B=15:DD=])speciation:0.019539[&&NHX:D=N:B=0:T=314146:DD=])duplication:0.026935[&&NHX:DD=Y:T=314146:B=0:D=])speciation:0.017095[&&NHX:D=N:T=1437010:B=0:DD=],(((((((ENSLAFG00000028692_LafrENSLAFP00000023554:0.00886[&&NHX:D=N:T=9785],ENSLAFG00000030880_LafrENSLAFP00000027441:0.052436[&&NHX:D=N:T=9785])duplication:0.006909[&&NHX:D=Y:B=0:T=9785],ENSLAFG00000030555_LafrENSLAFP00000027808:0.044446[&&NHX:D=N:T=9785])duplication:0.003043[&&NHX:D=Y:T=9785:B=0],(ENSLAFG00000028299_LafrENSLAFP00000024998:0.011792[&&NHX:D=N:T=9785],ENSLAFG00000032042_LafrENSLAFP00000023389:0.017693[&&NHX:D=N:T=9785])duplication:0.015904[&&NHX:D=Y:T=9785:B=74])duplication:0.0[&&NHX:D=Y:B=0:T=9785],(((ENSLAFG00000027365_LafrENSLAFP00000025852:0.011873[&&NHX:D=N:T=9785],ENSLAFG00000026238_LafrENSLAFP00000027253:0.026457[&&NHX:D=N:T=9785])duplication:0.019571[&&NHX:D=Y:T=9785:B=81],ENSLAFG00000027669_LafrENSLAFP00000028793:0.027495[&&NHX:D=N:T=9785])duplication:0.016599[&&NHX:D=Y:T=9785:B=70],ENSLAFG00000027820_LafrENSLAFP00000028173:0.058133[&&NHX:D=N:T=9785])duplication:0.031788[&&NHX:D=Y:T=9785:B=87])duplication:0.038135[&&NHX:D=Y:T=9785:B=10],(ENSLAFG00000027348_LafrENSLAFP00000027515:0.028441[&&NHX:D=N:T=9785],ENSLAFG00000027474_LafrENSLAFP00000018379:0.03464[&&NHX:D=N:T=9785])duplication:0.131904[&&NHX:D=Y:B=100:T=9785],ENSLAFG00000007483_LafrENSLAFP00000006292:0.058399[&&NHX:D=N:T=9785])duplication:0.0075[&&NHX:D=Y:T=9785:B=23],TP53_PcapENSPCAP00000011892:0.114307[&&NHX:D=N:T=9813])speciation:0.010282[&&NHX:D=N:T=311790:B=18:DD=],(ENSETEG00000008987_EtelENSETEP00000007296:0.0[&&NHX:D=N:T=9371],ENSETEG00000009984_EtelENSETEP00000008111:0.105253[&&NHX:D=N:T=9371])duplication:0.154739[&&NHX:D=Y:B=100:T=9371])speciation:0.044399[&&NHX:D=N:T=311790:B=35:DD=])speciation:0.041158[&&NHX:D=N:B=0:T=9347:DD=],TP53_DnovENSDNOP00000004075:0.078395[&&NHX:D=N:T=9361])speciation:0.080059[&&NHX:D=N:B=0:T=9347:DD=],((TP53_SharENSSHAP00000018268:0.0496[&&NHX:D=N:T=9305],ENSMODG00000007271_MdomENSMODP00000009014:0.172546[&&NHX:D=N:T=13616])speciation:0.024952[&&NHX:D=N:T=9263:B=83:DD=],ENSMEUG00000013135_MeugENSMEUP00000011978:0.069167[&&NHX:D=N:T=9315])speciation:0.225429[&&NHX:D=N:B=83:T=9263:DD=])speciation:0.228895[&&NHX:D=N:B=81:T=32525:DD=],tp53_XtroENSXETP00000053759:0.483686[&&NHX:D=N:T=8364])speciation:0.095084[&&NHX:D=N:B=55:T=32523:DD=],(TP53_PsinENSPSIP00000014905:0.228951[&&NHX:D=N:T=13735],ENSOANG00000011981_OanaENSOANP00000018980:0.553865[&&NHX:D=N:T=9258])speciation:0.126185[&&NHX:D=N:B=48:T=32524:DD=])duplication:0.03737[&&NHX:DD=Y:B=17:T=32523:D=],TP53_LchaENSLACP00000015915:0.317935[&&NHX:D=N:T=7897])speciation:0.062274[&&NHX:D=N:B=13:T=8287:DD=],(((tp53_DrerENSDARP00000051548:0.365455[&&NHX:D=N:T=7955],tp53_AmexENSAMXP00000021366:0.579505[&&NHX:D=N:T=7994])speciation:0.105036[&&NHX:D=N:B=46:T=186626:DD=],((((((tp53_TrubENSTRUP00000030645:0.158124[&&NHX:D=N:T=31033],tp53_TnigENSTNIP00000013035:0.25403[&&NHX:D=N:T=99883])speciation:0.1396[&&NHX:D=N:T=31031:B=100:DD=],tp53_OlatENSORLP00000008029:0.359414[&&NHX:D=N:T=8090])speciation:0.040022[&&NHX:D=N:T=1489872:B=1:DD=],(tp53_GacuENSGACP00000025614:0.249641[&&NHX:D=N:T=69293],tp53_OnilENSONIP00000023874:0.251831[&&NHX:D=N:T=8128])speciation:0.085834[&&NHX:D=N:T=1489872:B=100:DD=])duplication:0.070104[&&NHX:DD=Y:T=1489872:B=0:D=],(tp53_PforENSPFOP00000007556:0.070709[&&NHX:D=N:T=48698],tp53_XmacENSXMAP00000015753:0.165631[&&NHX:D=N:T=8083])speciation:0.290725[&&NHX:D=N:B=100:T=586240:DD=])duplication:0.058888[&&NHX:DD=Y:B=2:T=1489872:D=],ENSGMOG00000007755_GmorENSGMOP00000008291:0.272843[&&NHX:D=N:T=8049])speciation:0.143728[&&NHX:D=N:T=123368:B=3:DD=],TP531ofmany_AmexENSAMXP00000007265:0.383807[&&NHX:D=N:T=7994])speciation:0.129809[&&NHX:D=N:T=186625:B=41:DD=])duplication:0.079851[&&NHX:D=Y:B=6:T=186625],tp53_LocuENSLOCP00000017063:0.263043[&&NHX:D=N:T=7918])speciation:0.079504[&&NHX:D=N:T=41665:B=5:DD=])speciation:0.205725[&&NHX:D=N:B=10:T=117571:DD=],ENSPMAG00000009535_PmarENSPMAP00000010479:0.363682[&&NHX:D=N:T=7757])speciation:0.005138[&&NHX:D=N:B=0:T=7742:DD=],((((((((((((TP63_MgalENSMGAP00000001036:0.00675[&&NHX:D=N:T=9103],TP63_GgalENSGALP00000032705:0.02786[&&NHX:D=N:T=9031])speciation:0.018196[&&NHX:D=N:B=100:T=9005:DD=],TP63_AplaENSAPLP00000012746:0.025285[&&NHX:D=N:T=8839])speciation:0.020559[&&NHX:D=N:B=100:T=1549675:DD=],(TP63_TgutENSTGUP00000009686:0.018245[&&NHX:D=N:T=59729],TP63_FalbENSFALP00000007718:0.02902[&&NHX:D=N:T=59894])speciation:0.022707[&&NHX:D=N:B=100:T=9126:DD=])speciation:0.046097[&&NHX:D=N:T=8825:B=100:DD=],TP63_PsinENSPSIP00000018044:0.123057[&&NHX:D=N:T=13735])speciation:0.005555[&&NHX:D=N:T=1329799:B=37:DD=],TP63_AcarENSACAP00000000376:0.736631[&&NHX:D=N:T=28377])speciation:0.010123[&&NHX:D=N:B=0:T=32561:DD=],((((((((((Trp63_MmusENSMUSP00000110965:0.000847[&&NHX:D=N:T=10090],Trp63_MsspMGP_SPRETEiJ_P0042982:0.004734[&&NHX:D=N:T=10096])speciation:0.021561[&&NHX:D=N:B=100:T=862507:DD=],Tp63_RnorENSRNOP00000033463:0.030383[&&NHX:D=N:T=10116])speciation:0.048568[&&NHX:D=N:T=39107:B=100:DD=],Trp63_DordENSDORP00000001930:0.044582[&&NHX:D=N:T=10020],TP63_ItriENSSTOP00000012357:0.057295[&&NHX:D=N:T=43179])speciation:0.000474[&&NHX:D=N:T=33553:B=0:DD=],TP63_CporENSCPOP00000013308:0.058396[&&NHX:D=N:T=10141])speciation:0.003336[&&NHX:D=N:B=0:T=9989:DD=],TP63_OpriENSOPRP00000002632:0.076764[&&NHX:D=N:T=9978])speciation:0.001386[&&NHX:D=N:B=0:T=314147:DD=],(TP63_OcunENSOCUP00000014157:0.04305[&&NHX:D=N:T=9986],TP63_OgarENSOGAP00000003415:0.053686[&&NHX:D=N:T=30611])speciation:0.018263[&&NHX:D=N:B=56:T=314146:DD=])duplication:0.0[&&NHX:DD=Y:T=314146:B=0:D=],TP63_TbelENSTBEP00000003655:0.050557[&&NHX:D=N:T=37347])speciation:0.000127[&&NHX:D=N:B=0:T=314146:DD=],(((((((TP63_PvamENSPVAP00000008543:0.02784[&&NHX:D=N:T=132908],TP63_MlucENSMLUP00000014213:0.029592[&&NHX:D=N:T=59463])speciation:0.007063[&&NHX:D=N:B=37:T=9397:DD=],(((TP63_AmelENSAMEP00000000831:0.015923[&&NHX:D=N:T=9646],TP63_CfamENSCAFP00000020585:0.020935[&&NHX:D=N:T=9615])speciation:0.003042[&&NHX:D=N:T=379584:B=80:DD=],TP63_MpfuENSMPUP00000003407:0.032827[&&NHX:D=N:T=9669])speciation:0.009414[&&NHX:D=N:B=64:T=379584:DD=],TP63_FcatENSFCAP00000000731:0.02322[&&NHX:D=N:T=9685])speciation:0.017067[&&NHX:D=N:T=33554:B=74:DD=])speciation:0.001436[&&NHX:D=N:T=314145:B=0:DD=],((((TP63_BtauENSBTAP00000020544:0.005072[&&NHX:D=N:T=9913],TP63_OariENSOARP00000021997:0.009983[&&NHX:D=N:T=9940])speciation:0.025469[&&NHX:D=N:T=9895:B=100:DD=],TP63_TtruENSTTRP00000011034:0.022489[&&NHX:D=N:T=9739])speciation:0.005877[&&NHX:D=N:B=58:T=91561:DD=],TP63_SscrENSSSCP00000025960:0.02089[&&NHX:D=N:T=9823])speciation:0.005665[&&NHX:D=N:B=29:T=91561:DD=],TP63_VpacENSVPAP00000011479:0.032735[&&NHX:D=N:T=30538])speciation:0.007589[&&NHX:D=N:B=13:T=91561:DD=])speciation:0.001552[&&NHX:D=N:B=0:T=314145:DD=],(TP63_EcabENSECAP00000016315:0.020605[&&NHX:D=N:T=9796],TP63_EeurENSEEUP00000012623:0.068478[&&NHX:D=N:T=9365])speciation:0.015388[&&NHX:D=N:B=15:T=314145:DD=])speciation:0.00388[&&NHX:D=N:T=314145:B=0:DD=],((((((((TP63_HsapENSP00000264731:0.001872[&&NHX:D=N:T=9606],TP63_GgorENSGGOP00000020551:0.002754[&&NHX:D=N:T=9595])speciation:0.000918[&&NHX:D=N:T=207598:B=46:DD=],TP63_PtroENSPTRP00000027067:0.001869[&&NHX:D=N:T=9598])speciation:0.002874[&&NHX:D=N:T=207598:B=46:DD=],TP63_PabeENSPPYP00000016106:0.004542[&&NHX:D=N:T=9601])speciation:0.000913[&&NHX:D=N:T=9604:B=70:DD=],TP63_NleuENSNLEP00000008197:0.004734[&&NHX:D=N:T=61853])speciation:0.000949[&&NHX:D=N:T=314295:B=66:DD=],((TP63_MmulENSMMUP00000038274:0.003714[&&NHX:D=N:T=9544],TP63_CsabENSCSAP00000005295:0.026509[&&NHX:D=N:T=60711])speciation:0.0[&&NHX:D=N:B=31:T=9528:DD=],TP63_PanuENSPANP00000003169:0.001823[&&NHX:D=N:T=9555])speciation:0.010162[&&NHX:D=N:B=31:T=9528:DD=])speciation:0.010185[&&NHX:D=N:T=9526:B=95:DD=],TP63_CjacENSCJAP00000026376:0.015601[&&NHX:D=N:T=9483])speciation:0.013295[&&NHX:D=N:T=314293:B=100:DD=],TP63_MmurENSMICP00000022696:0.021271[&&NHX:D=N:T=30608])speciation:0.0[&&NHX:D=N:B=42:T=9443:DD=],(TP63_TsyrENSTSYP00000003403:0.025783[&&NHX:D=N:T=1868482],TP63_SaraENSSARP00000011553:0.056367[&&NHX:D=N:T=42254])speciation:0.010618[&&NHX:D=N:B=14:T=1437010:DD=])duplication:0.006497[&&NHX:DD=Y:B=1:T=1437010:D=])duplication:0.0[&&NHX:DD=Y:B=0:T=1437010:D=],(TP63_DnovENSDNOP00000012853:0.025753[&&NHX:D=N:T=9361],TP63_ChofENSCHOP00000009300:0.040693[&&NHX:D=N:T=9358])speciation:0.020456[&&NHX:D=N:B=76:T=9348:DD=])speciation:0.001941[&&NHX:D=N:T=9347:B=0:DD=],((TP63_LafrENSLAFP00000020806:0.016207[&&NHX:D=N:T=9785],TP63_PcapENSPCAP00000004708:0.030306[&&NHX:D=N:T=9813])speciation:0.00755[&&NHX:D=N:T=311790:B=91:DD=],TP63_EtelENSETEP00000001864:0.071017[&&NHX:D=N:T=9371])speciation:0.015236[&&NHX:D=N:T=311790:B=8:DD=])speciation:0.007477[&&NHX:D=N:B=0:T=9347:DD=])duplication:0.052158[&&NHX:DD=Y:B=0:T=9347:D=],((TP63_MdomENSMODP00000018831:0.034607[&&NHX:D=N:T=13616],TP63_MeugENSMEUP00000014131:0.045944[&&NHX:D=N:T=9315])speciation:0.011561[&&NHX:D=N:T=9263:B=100:DD=],TP63_SharENSSHAP00000008666:0.303146[&&NHX:D=N:T=9305])speciation:0.054652[&&NHX:D=N:B=12:T=9263:DD=])speciation:0.017647[&&NHX:D=N:B=2:T=32525:DD=],TP63_OanaENSOANP00000021753:0.079276[&&NHX:D=N:T=9258])speciation:0.043447[&&NHX:D=N:T=40674:B=2:DD=])speciation:0.034349[&&NHX:D=N:T=32524:B=0:DD=],tp63_XtroENSXETP00000055541:0.267401[&&NHX:D=N:T=8364])speciation:0.032348[&&NHX:D=N:B=0:T=32523:DD=],(ENSACAG00000002961_AcarENSACAP00000002870:0.0[&&NHX:D=N:T=28377],ENSACAG00000022533_AcarENSACAP00000021196:1.16541[&&NHX:D=N:T=28377])duplication:0.116614[&&NHX:D=Y:T=28377:B=0])duplication:0.005373[&&NHX:D=Y:T=32523:B=0],TP63_LchaENSLACP00000022643:0.17787[&&NHX:D=N:T=7897])speciation:0.031924[&&NHX:D=N:T=8287:B=0:DD=],(((((((tp63_PforENSPFOP00000001124:0.014737[&&NHX:D=N:T=48698],tp63_XmacENSXMAP00000016461:0.044393[&&NHX:D=N:T=8083])speciation:0.052269[&&NHX:D=N:B=99:T=586240:DD=],tp63_OlatENSORLP00000019616:0.105223[&&NHX:D=N:T=8090])speciation:0.020917[&&NHX:D=N:B=24:T=1489913:DD=],tp63_OnilENSONIP00000024326:0.065197[&&NHX:D=N:T=8128])speciation:0.01928[&&NHX:D=N:T=1489908:B=16:DD=],(tp63_TnigENSTNIP00000016776:0.042973[&&NHX:D=N:T=99883],tp63_TrubENSTRUP00000008025:0.048688[&&NHX:D=N:T=31033])speciation:0.043668[&&NHX:D=N:B=100:T=31031:DD=])speciation:0.020832[&&NHX:D=N:B=77:T=1489872:DD=],(ENSGACG00000013629_GacuENSGACP00000018012:0.069577[&&NHX:D=N:T=69293],ENSGMOG00000000413_GmorENSGMOP00000000401:0.110102[&&NHX:D=N:T=8049])speciation:0.067443[&&NHX:D=N:B=97:T=123368:DD=])duplication:0.040724[&&NHX:DD=Y:B=65:T=123368:D=],(tp63_AmexENSAMXP00000004961:0.092792[&&NHX:D=N:T=7994],tp63_DrerENSDARP00000108362:0.121291[&&NHX:D=N:T=7955])speciation:0.046115[&&NHX:D=N:T=186626:B=86:DD=])speciation:0.034365[&&NHX:D=N:T=186625:B=37:DD=],tp63_LocuENSLOCP00000006202:0.102939[&&NHX:D=N:T=7918])speciation:0.049371[&&NHX:D=N:B=52:T=41665:DD=])speciation:0.110844[&&NHX:D=N:B=0:T=117571:DD=],(((((((((((TP73_LafrENSLAFP00000005892:0.029578[&&NHX:D=N:T=9785],TP73_PcapENSPCAP00000000662:0.051492[&&NHX:D=N:T=9813])speciation:0.003183[&&NHX:D=N:T=311790:B=90:DD=],TP73_EtelENSETEP00000007165:0.095673[&&NHX:D=N:T=9371])speciation:0.033805[&&NHX:D=N:T=311790:B=0:DD=],TP73_DnovENSDNOP00000028722:0.457081[&&NHX:D=N:T=9361])speciation:0.006287[&&NHX:D=N:B=0:T=9347:DD=],((((((((TP73_BtauENSBTAP00000007643:0.009498[&&NHX:D=N:T=9913],TP73_OariENSOARP00000017005:0.019572[&&NHX:D=N:T=9940])speciation:0.012531[&&NHX:D=N:T=9895:B=100:DD=],ENSSSCG00000025685_SscrENSSSCP00000022771:0.057187[&&NHX:D=N:T=9823])speciation:0.018712[&&NHX:D=N:T=91561:B=1:DD=],TP73_TtruENSTTRP00000003223:0.039795[&&NHX:D=N:T=9739])speciation:0.015091[&&NHX:D=N:T=91561:B=0:DD=],(((TP73_AmelENSAMEP00000009745:0.040276[&&NHX:D=N:T=9646],TP73_MpfuENSMPUP00000007349:0.069423[&&NHX:D=N:T=9669])speciation:0.011068[&&NHX:D=N:B=5:T=379584:DD=],TP73_CfamENSCAFP00000028819:0.025289[&&NHX:D=N:T=9615])speciation:0.003214[&&NHX:D=N:B=4:T=379584:DD=],TP73_FcatENSFCAP00000010792:0.059719[&&NHX:D=N:T=9685])speciation:0.021832[&&NHX:D=N:B=20:T=33554:DD=])speciation:0.009094[&&NHX:D=N:T=314145:B=0:DD=],TP73_PvamENSPVAP00000008433:0.078992[&&NHX:D=N:T=132908])speciation:0.005352[&&NHX:D=N:T=314145:B=0:DD=],TP73_EeurENSEEUP00000011975:0.098606[&&NHX:D=N:T=9365])speciation:0.0[&&NHX:D=N:B=0:T=314145:DD=],TP73_EcabENSECAP00000001313:0.038035[&&NHX:D=N:T=9796])speciation:0.007356[&&NHX:D=N:T=314145:B=0:DD=],((((((Trp73_MsspMGP_SPRETEiJ_P0068738:0.0082[&&NHX:D=N:T=10096],Trp73_MmusENSMUSP00000101269:0.011834[&&NHX:D=N:T=10090])speciation:0.027464[&&NHX:D=N:B=100:T=862507:DD=],Tp73_RnorENSRNOP00000052265:0.034464[&&NHX:D=N:T=10116])speciation:0.085459[&&NHX:D=N:T=39107:B=100:DD=],TP73_ItriENSSTOP00000022492:0.061184[&&NHX:D=N:T=43179])speciation:0.008334[&&NHX:D=N:B=2:T=33553:DD=],Trp73_DordENSDORP00000013966:0.076743[&&NHX:D=N:T=10020])speciation:0.0[&&NHX:D=N:T=33553:B=0:DD=],TP73_CporENSCPOP00000009800:0.075508[&&NHX:D=N:T=10141])speciation:0.004958[&&NHX:D=N:T=9989:B=0:DD=],((TP73_MmurENSMICP00000031305:0.033995[&&NHX:D=N:T=30608],TP73_OgarENSOGAP00000005402:0.043894[&&NHX:D=N:T=30611])speciation:0.017054[&&NHX:D=N:T=376911:B=93:DD=],((((((TP73_GgorENSGGOP00000015180:0.00182[&&NHX:D=N:T=9595],TP73_HsapENSP00000367545:0.005775[&&NHX:D=N:T=9606])speciation:0.0[&&NHX:D=N:T=207598:B=92:DD=],TP73_PtroENSPTRP00000000118:0.05274[&&NHX:D=N:T=9598])speciation:0.005412[&&NHX:D=N:B=81:T=207598:DD=],TP73_PabeENSPPYP00000002277:0.013149[&&NHX:D=N:T=9601])speciation:0.000495[&&NHX:D=N:B=30:T=9604:DD=],TP73_NleuENSNLEP00000009887:0.326917[&&NHX:D=N:T=61853])speciation:0.010918[&&NHX:D=N:T=314295:B=0:DD=],((TP73_PanuENSPANP00000007545:0.004788[&&NHX:D=N:T=9555],TP73_CsabENSCSAP00000017283:0.012519[&&NHX:D=N:T=60711])speciation:0.000519[&&NHX:D=N:T=9528:B=86:DD=],TP73_MmulENSMMUP00000040655:0.025402[&&NHX:D=N:T=9544])duplication:0.013713[&&NHX:D=N:B=75:T=9528:DD=])speciation:0.010332[&&NHX:D=N:T=9526:B=0:DD=],TP73_CjacENSCJAP00000005070:0.291972[&&NHX:D=N:T=9483])speciation:0.022859[&&NHX:D=N:B=0:T=314293:DD=])speciation:0.014731[&&NHX:D=N:B=0:T=9443:DD=])speciation:0.020217[&&NHX:D=N:T=314146:B=0:DD=])speciation:0.01086[&&NHX:D=N:T=1437010:B=0:DD=])speciation:0.048685[&&NHX:D=N:T=9347:B=0:DD=],ENSSSCG00000003361_SscrENSSSCP00000003644:0.097446[&&NHX:D=N:T=9823])duplication:0.016508[&&NHX:D=Y:T=9347:B=0],((TP73_MeugENSMEUP00000000705:0.023362[&&NHX:D=N:T=9315],TP73_MdomENSMODP00000008216:0.259151[&&NHX:D=N:T=13616])speciation:0.035881[&&NHX:D=N:B=57:T=9263:DD=],TP73_SharENSSHAP00000006513:0.042193[&&NHX:D=N:T=9305])speciation:0.069704[&&NHX:D=N:T=9263:B=36:DD=])speciation:0.023293[&&NHX:D=N:T=32525:B=2:DD=],TP73_OanaENSOANP00000019815:0.30572[&&NHX:D=N:T=9258])speciation:0.017992[&&NHX:D=N:B=0:T=40674:DD=],(((((TP73_GgalENSGALP00000001485:0.002093[&&NHX:D=N:T=9031],TP73_MgalENSMGAP00000001059:0.036491[&&NHX:D=N:T=9103])speciation:0.047733[&&NHX:D=N:T=9005:B=100:DD=],TP73_AplaENSAPLP00000003415:0.02254[&&NHX:D=N:T=8839])speciation:0.021618[&&NHX:D=N:T=1549675:B=97:DD=],(TP73_TgutENSTGUP00000002829:0.010561[&&NHX:D=N:T=59729],TP73_FalbENSFALP00000010031:0.030208[&&NHX:D=N:T=59894])speciation:0.023763[&&NHX:D=N:T=9126:B=100:DD=])speciation:0.016346[&&NHX:D=N:B=97:T=8825:DD=],TP73_PsinENSPSIP00000004448:0.109544[&&NHX:D=N:T=13735])speciation:0.026517[&&NHX:D=N:T=1329799:B=84:DD=],TP73_AcarENSACAP00000001746:0.128451[&&NHX:D=N:T=28377])speciation:0.019965[&&NHX:D=N:B=67:T=32561:DD=])speciation:0.036745[&&NHX:D=N:T=32524:B=15:DD=],tp73_XtroENSXETP00000010981:0.182635[&&NHX:D=N:T=8364])speciation:0.011019[&&NHX:D=N:B=1:T=32523:DD=],TP73_LchaENSLACP00000021702:0.142378[&&NHX:D=N:T=7897])speciation:0.024057[&&NHX:D=N:B=0:T=8287:DD=],((((((tp73_TnigENSTNIP00000014938:0.027328[&&NHX:D=N:T=99883],tp73_TrubENSTRUP00000038165:0.032469[&&NHX:D=N:T=31033])speciation:0.059199[&&NHX:D=N:T=31031:B=100:DD=],tp73_GacuENSGACP00000008676:0.048591[&&NHX:D=N:T=69293])speciation:0.007086[&&NHX:D=N:T=1489922:B=29:DD=],(((tp73_PforENSPFOP00000010896:0.013197[&&NHX:D=N:T=48698],tp73_XmacENSXMAP00000017403:0.030558[&&NHX:D=N:T=8083])speciation:0.063838[&&NHX:D=N:B=100:T=586240:DD=],tp73_OlatENSORLP00000005521:0.062083[&&NHX:D=N:T=8090])speciation:0.017304[&&NHX:D=N:B=58:T=1489913:DD=],tp73_OnilENSONIP00000002627:0.053778[&&NHX:D=N:T=8128])speciation:0.014746[&&NHX:D=N:T=1489908:B=29:DD=])speciation:0.072637[&&NHX:D=N:B=14:T=1489872:DD=],tp73_GmorENSGMOP00000016675:0.181445[&&NHX:D=N:T=8049])speciation:0.038065[&&NHX:D=N:T=123368:B=98:DD=],(tp73_AmexENSAMXP00000014358:0.086906[&&NHX:D=N:T=7994],tp73_DrerENSDARP00000109674:0.134572[&&NHX:D=N:T=7955])speciation:0.064476[&&NHX:D=N:T=186626:B=100:DD=])speciation:0.04364[&&NHX:D=N:T=186625:B=43:DD=],tp73_LocuENSLOCP00000006343:0.115822[&&NHX:D=N:T=7918])speciation:0.046704[&&NHX:D=N:T=41665:B=14:DD=])speciation:0.167736[&&NHX:D=N:T=117571:B=27:DD=])duplication:0.067299[&&NHX:D=Y:B=0:T=117571],tp63_PmarENSPMAP00000007639:0.797694[&&NHX:D=N:T=7757])speciation:0.076045[&&NHX:D=N:T=7742:B=0:DD=],(('p53/p73-b CintENSCINP00000004447':0.450754[&&NHX:D=N:T=7719],ENSCSAVG00000009788_CsavENSCSAVP00000016659:0.47517[&&NHX:D=N:T=51511])speciation:0.378426[&&NHX:D=N:B=100:T=7718:DD=],(ENSCING00000001960_CintENSCINP00000003956:0.141945[&&NHX:D=N:T=7719],ENSCSAVG00000009964_CsavENSCSAVP00000016940:0.26284[&&NHX:D=N:T=51511])speciation:0.525939[&&NHX:D=N:T=7718:B=100:DD=])duplication:0.603292[&&NHX:D=Y:B=100:T=7718])duplication:0.0[&&NHX:D=N:T=7711:B=0:DD=];\",\n \"LRF2\" : \"((((((((((((((((((TP53_AmelENSAMEP00000017825:0.0263[&&NHX:D=N:T=9646],TP53_MpfuENSMPUP00000008945:0.066538[&&NHX:D=N:T=9669])speciation:0.032561[&&NHX:D=N:B=99:T=379584:DD=],TP53_CfamENSCAFP00000024579:0.086484[&&NHX:D=N:T=9615])speciation:0.034068[&&NHX:D=N:B=81:T=379584:DD=],TP53_FcatENSFCAP00000008925:0.06619[&&NHX:D=N:T=9685])speciation:0.025911[&&NHX:D=N:B=31:T=33554:DD=],TP53_EcabENSECAP00000006210:0.04971[&&NHX:D=N:T=9796])speciation:0.01224[&&NHX:D=N:T=314145:B=17:DD=],(((TP53_BtauENSBTAP00000001420:0.043108[&&NHX:D=N:T=9913],TP53_OariENSOARP00000016707:0.049064[&&NHX:D=N:T=9940])speciation:0.055294[&&NHX:D=N:B=98:T=9895:DD=],TP53_TtruENSTTRP00000009721:0.022529[&&NHX:D=N:T=9739])speciation:0.022515[&&NHX:D=N:T=91561:B=39:DD=],TP53_SscrENSSSCP00000019016:0.065797[&&NHX:D=N:T=9823])speciation:0.020972[&&NHX:D=N:T=91561:B=35:DD=])speciation:0.006996[&&NHX:D=N:B=9:T=314145:DD=],TP53_SaraENSSARP00000005616:0.149927[&&NHX:D=N:T=42254])speciation:0.013221[&&NHX:D=N:T=314145:B=7:DD=],TP53_PvamENSPVAP00000015400:0.117578[&&NHX:D=N:T=132908])speciation:0.0[&&NHX:D=N:B=1:T=314145:DD=],((ENSMLUG00000006411_MlucENSMLUP00000005861:0.003702[&&NHX:D=N:T=59463],ENSMLUG00000025140_MlucENSMLUP00000016733:0.12569[&&NHX:D=N:T=59463])duplication:0.131525[&&NHX:D=Y:T=59463:B=100],TP53_EeurENSEEUP00000013295:0.183463[&&NHX:D=N:T=9365])speciation:0.042602[&&NHX:D=N:T=314145:B=33:DD=])duplication:0.018327[&&NHX:DD=Y:T=314145:B=0:D=],(((((Trp53_MmusENSMUSP00000104298:0.002681[&&NHX:D=N:T=10090],Trp53_MsspMGP_SPRETEiJ_P0028933:0.017851[&&NHX:D=N:T=10096])speciation:0.064969[&&NHX:D=N:B=100:T=862507:DD=],Tp53_RnorENSRNOP00000074031:0.079068[&&NHX:D=N:T=10116])speciation:0.12872[&&NHX:D=N:T=39107:B=100:DD=],LOC100910954_RnorENSRNOP00000064177:0.056502[&&NHX:D=N:T=10116])duplication:0.0[&&NHX:D=Y:B=5:T=39107],TP53_OpriENSOPRP00000005906:0.185911[&&NHX:D=N:T=9978])speciation:0.0[&&NHX:D=N:T=314147:B=0:DD=],((((TP53_MmurENSMICP00000039812:0.054544[&&NHX:D=N:T=30608],TP53_OgarENSOGAP00000015106:0.095719[&&NHX:D=N:T=30611])speciation:0.012762[&&NHX:D=N:B=52:T=376911:DD=],((((((TP53_HsapENSP00000269305:0.0[&&NHX:D=N:T=9606],TP53_GgorENSGGOP00000009561:0.002907[&&NHX:D=N:T=9595])speciation:0.001345[&&NHX:D=N:B=61:T=207598:DD=],TP53_PtroENSPTRP00000014836:0.000592[&&NHX:D=N:T=9598])speciation:0.00877[&&NHX:D=N:B=61:T=207598:DD=],TP53_PabeENSPPYP00000008923:0.009552[&&NHX:D=N:T=9601])speciation:4.8e-05[&&NHX:D=N:T=9604:B=100:DD=],TP53_NleuENSNLEP00000011861:0.032229[&&NHX:D=N:T=61853])speciation:0.004444[&&NHX:D=N:T=314295:B=97:DD=],((TP53_PanuENSPANP00000019643:0.007102[&&NHX:D=N:T=9555],TP53_CsabENSCSAP00000007551:0.010543[&&NHX:D=N:T=60711])speciation:0.000953[&&NHX:D=N:B=100:T=9528:DD=],TP53_MmulENSMMUP00000035274:0.043449[&&NHX:D=N:T=9544])speciation:0.019535[&&NHX:D=N:T=9528:B=55:DD=])speciation:0.013822[&&NHX:D=N:T=9526:B=52:DD=],TP53_CjacENSCJAP00000027663:0.047099[&&NHX:D=N:T=9483])speciation:0.027286[&&NHX:D=N:B=57:T=314293:DD=])speciation:0.013265[&&NHX:D=N:T=9443:B=4:DD=],TP53_TbelENSTBEP00000010189:0.222843[&&NHX:D=N:T=37347])speciation:0.008121[&&NHX:D=N:B=0:T=314146:DD=],((TP53_ItriENSSTOP00000019678:0.08339[&&NHX:D=N:T=43179],Tp53_CporENSCPOP00000012841:0.120892[&&NHX:D=N:T=10141])speciation:0.018406[&&NHX:D=N:T=9989:B=42:DD=],(ENSOCUG00000001138_OcunENSOCUP00000000989:0.013142[&&NHX:D=N:T=9986],ENSOCUG00000022109_OcunENSOCUP00000025959:0.090881[&&NHX:D=N:T=9986])duplication:0.069194[&&NHX:D=Y:T=9986:B=97])speciation:0.015339[&&NHX:D=N:T=314147:B=15:DD=])speciation:0.019539[&&NHX:D=N:B=0:T=314146:DD=])duplication:0.026935[&&NHX:DD=Y:T=314146:B=0:D=])speciation:0.017095[&&NHX:D=N:T=1437010:B=0:DD=],((((((((ENSLAFG00000028692_LafrENSLAFP00000023554:0.00886[&&NHX:D=N:T=9785],ENSLAFG00000030880_LafrENSLAFP00000027441:0.052436[&&NHX:D=N:T=9785])duplication:0.006909[&&NHX:D=Y:B=0:T=9785],ENSLAFG00000030555_LafrENSLAFP00000027808:0.044446[&&NHX:D=N:T=9785])duplication:0.003043[&&NHX:D=Y:T=9785:B=0],(ENSLAFG00000028299_LafrENSLAFP00000024998:0.011792[&&NHX:D=N:T=9785],ENSLAFG00000032042_LafrENSLAFP00000023389:0.017693[&&NHX:D=N:T=9785])duplication:0.015904[&&NHX:D=Y:T=9785:B=74])duplication:0.0[&&NHX:D=Y:B=0:T=9785],(((ENSLAFG00000027365_LafrENSLAFP00000025852:0.011873[&&NHX:D=N:T=9785],ENSLAFG00000026238_LafrENSLAFP00000027253:0.026457[&&NHX:D=N:T=9785])duplication:0.019571[&&NHX:D=Y:T=9785:B=81],ENSLAFG00000027669_LafrENSLAFP00000028793:0.027495[&&NHX:D=N:T=9785])duplication:0.016599[&&NHX:D=Y:T=9785:B=70],ENSLAFG00000027820_LafrENSLAFP00000028173:0.058133[&&NHX:D=N:T=9785])duplication:0.031788[&&NHX:D=Y:T=9785:B=87])duplication:0.038135[&&NHX:D=Y:T=9785:B=10],(ENSLAFG00000027348_LafrENSLAFP00000027515:0.028441[&&NHX:D=N:T=9785],ENSLAFG00000027474_LafrENSLAFP00000018379:0.03464[&&NHX:D=N:T=9785])duplication:0.131904[&&NHX:D=Y:B=100:T=9785])duplication:0.082412[&&NHX:D=Y:T=9785:B=96],ENSLAFG00000007483_LafrENSLAFP00000006292:0.058399[&&NHX:D=N:T=9785])duplication:0.0075[&&NHX:D=Y:T=9785:B=23],TP53_PcapENSPCAP00000011892:0.114307[&&NHX:D=N:T=9813])speciation:0.010282[&&NHX:D=N:T=311790:B=18:DD=],(ENSETEG00000008987_EtelENSETEP00000007296:0.0[&&NHX:D=N:T=9371],ENSETEG00000009984_EtelENSETEP00000008111:0.105253[&&NHX:D=N:T=9371])duplication:0.154739[&&NHX:D=Y:B=100:T=9371])speciation:0.044399[&&NHX:D=N:T=311790:B=35:DD=])speciation:0.041158[&&NHX:D=N:B=0:T=9347:DD=],TP53_DnovENSDNOP00000004075:0.078395[&&NHX:D=N:T=9361])speciation:0.080059[&&NHX:D=N:B=0:T=9347:DD=],((TP53_SharENSSHAP00000018268:0.0496[&&NHX:D=N:T=9305],ENSMODG00000007271_MdomENSMODP00000009014:0.172546[&&NHX:D=N:T=13616])speciation:0.024952[&&NHX:D=N:T=9263:B=83:DD=],ENSMEUG00000013135_MeugENSMEUP00000011978:0.069167[&&NHX:D=N:T=9315])speciation:0.225429[&&NHX:D=N:B=83:T=9263:DD=])speciation:0.228895[&&NHX:D=N:B=81:T=32525:DD=],tp53_XtroENSXETP00000053759:0.483686[&&NHX:D=N:T=8364])speciation:0.095084[&&NHX:D=N:B=55:T=32523:DD=],(TP53_PsinENSPSIP00000014905:0.228951[&&NHX:D=N:T=13735],ENSOANG00000011981_OanaENSOANP00000018980:0.553865[&&NHX:D=N:T=9258])speciation:0.126185[&&NHX:D=N:B=48:T=32524:DD=])duplication:0.03737[&&NHX:DD=Y:B=17:T=32523:D=],TP53_LchaENSLACP00000015915:0.317935[&&NHX:D=N:T=7897])speciation:0.062274[&&NHX:D=N:B=13:T=8287:DD=],(((tp53_DrerENSDARP00000051548:0.365455[&&NHX:D=N:T=7955],tp53_AmexENSAMXP00000021366:0.579505[&&NHX:D=N:T=7994])speciation:0.105036[&&NHX:D=N:B=46:T=186626:DD=],((((((tp53_TrubENSTRUP00000030645:0.158124[&&NHX:D=N:T=31033],tp53_TnigENSTNIP00000013035:0.25403[&&NHX:D=N:T=99883])speciation:0.1396[&&NHX:D=N:T=31031:B=100:DD=],tp53_OlatENSORLP00000008029:0.359414[&&NHX:D=N:T=8090])speciation:0.040022[&&NHX:D=N:T=1489872:B=1:DD=],(tp53_GacuENSGACP00000025614:0.249641[&&NHX:D=N:T=69293],tp53_OnilENSONIP00000023874:0.251831[&&NHX:D=N:T=8128])speciation:0.085834[&&NHX:D=N:T=1489872:B=100:DD=])duplication:0.070104[&&NHX:DD=Y:T=1489872:B=0:D=],(tp53_PforENSPFOP00000007556:0.070709[&&NHX:D=N:T=48698],tp53_XmacENSXMAP00000015753:0.165631[&&NHX:D=N:T=8083])speciation:0.290725[&&NHX:D=N:B=100:T=586240:DD=])duplication:0.058888[&&NHX:DD=Y:B=2:T=1489872:D=],ENSGMOG00000007755_GmorENSGMOP00000008291:0.272843[&&NHX:D=N:T=8049])speciation:0.143728[&&NHX:D=N:T=123368:B=3:DD=],TP531ofmany_AmexENSAMXP00000007265:0.383807[&&NHX:D=N:T=7994])speciation:0.129809[&&NHX:D=N:T=186625:B=41:DD=])duplication:0.079851[&&NHX:D=Y:B=6:T=186625],tp53_LocuENSLOCP00000017063:0.263043[&&NHX:D=N:T=7918])speciation:0.079504[&&NHX:D=N:T=41665:B=5:DD=])speciation:0.205725[&&NHX:D=N:B=10:T=117571:DD=],ENSPMAG00000009535_PmarENSPMAP00000010479:0.363682[&&NHX:D=N:T=7757])speciation:0.005138[&&NHX:D=N:B=0:T=7742:DD=],((((((((((((TP63_MgalENSMGAP00000001036:0.00675[&&NHX:D=N:T=9103],TP63_GgalENSGALP00000032705:0.02786[&&NHX:D=N:T=9031])speciation:0.018196[&&NHX:D=N:B=100:T=9005:DD=],TP63_AplaENSAPLP00000012746:0.025285[&&NHX:D=N:T=8839])speciation:0.020559[&&NHX:D=N:B=100:T=1549675:DD=],(TP63_TgutENSTGUP00000009686:0.018245[&&NHX:D=N:T=59729],TP63_FalbENSFALP00000007718:0.02902[&&NHX:D=N:T=59894])speciation:0.022707[&&NHX:D=N:B=100:T=9126:DD=])speciation:0.046097[&&NHX:D=N:T=8825:B=100:DD=],TP63_PsinENSPSIP00000018044:0.123057[&&NHX:D=N:T=13735])speciation:0.005555[&&NHX:D=N:T=1329799:B=37:DD=],TP63_AcarENSACAP00000000376:0.736631[&&NHX:D=N:T=28377])speciation:0.010123[&&NHX:D=N:B=0:T=32561:DD=],(((((((((((Trp63_MmusENSMUSP00000110965:0.000847[&&NHX:D=N:T=10090],Trp63_MsspMGP_SPRETEiJ_P0042982:0.004734[&&NHX:D=N:T=10096])speciation:0.021561[&&NHX:D=N:B=100:T=862507:DD=],Tp63_RnorENSRNOP00000033463:0.030383[&&NHX:D=N:T=10116])speciation:0.048568[&&NHX:D=N:T=39107:B=100:DD=],Trp63_DordENSDORP00000001930:0.044582[&&NHX:D=N:T=10020])speciation:0.014056[&&NHX:D=N:B=17:T=33553:DD=],TP63_ItriENSSTOP00000012357:0.057295[&&NHX:D=N:T=43179])speciation:0.000474[&&NHX:D=N:T=33553:B=0:DD=],TP63_CporENSCPOP00000013308:0.058396[&&NHX:D=N:T=10141])speciation:0.003336[&&NHX:D=N:B=0:T=9989:DD=],TP63_OpriENSOPRP00000002632:0.076764[&&NHX:D=N:T=9978])speciation:0.001386[&&NHX:D=N:B=0:T=314147:DD=],(TP63_OcunENSOCUP00000014157:0.04305[&&NHX:D=N:T=9986],TP63_OgarENSOGAP00000003415:0.053686[&&NHX:D=N:T=30611])speciation:0.018263[&&NHX:D=N:B=56:T=314146:DD=])duplication:0.0[&&NHX:DD=Y:T=314146:B=0:D=],TP63_TbelENSTBEP00000003655:0.050557[&&NHX:D=N:T=37347])speciation:0.000127[&&NHX:D=N:B=0:T=314146:DD=],(((((((TP63_PvamENSPVAP00000008543:0.02784[&&NHX:D=N:T=132908],TP63_MlucENSMLUP00000014213:0.029592[&&NHX:D=N:T=59463])speciation:0.007063[&&NHX:D=N:B=37:T=9397:DD=],(((TP63_AmelENSAMEP00000000831:0.015923[&&NHX:D=N:T=9646],TP63_CfamENSCAFP00000020585:0.020935[&&NHX:D=N:T=9615])speciation:0.003042[&&NHX:D=N:T=379584:B=80:DD=],TP63_MpfuENSMPUP00000003407:0.032827[&&NHX:D=N:T=9669])speciation:0.009414[&&NHX:D=N:B=64:T=379584:DD=],TP63_FcatENSFCAP00000000731:0.02322[&&NHX:D=N:T=9685])speciation:0.017067[&&NHX:D=N:T=33554:B=74:DD=])speciation:0.001436[&&NHX:D=N:T=314145:B=0:DD=],((((TP63_BtauENSBTAP00000020544:0.005072[&&NHX:D=N:T=9913],TP63_OariENSOARP00000021997:0.009983[&&NHX:D=N:T=9940])speciation:0.025469[&&NHX:D=N:T=9895:B=100:DD=],TP63_TtruENSTTRP00000011034:0.022489[&&NHX:D=N:T=9739])speciation:0.005877[&&NHX:D=N:B=58:T=91561:DD=],TP63_SscrENSSSCP00000025960:0.02089[&&NHX:D=N:T=9823])speciation:0.005665[&&NHX:D=N:B=29:T=91561:DD=],TP63_VpacENSVPAP00000011479:0.032735[&&NHX:D=N:T=30538])speciation:0.007589[&&NHX:D=N:B=13:T=91561:DD=])speciation:0.001552[&&NHX:D=N:B=0:T=314145:DD=],(TP63_EcabENSECAP00000016315:0.020605[&&NHX:D=N:T=9796],TP63_EeurENSEEUP00000012623:0.068478[&&NHX:D=N:T=9365])speciation:0.015388[&&NHX:D=N:B=15:T=314145:DD=])speciation:0.00388[&&NHX:D=N:T=314145:B=0:DD=],((((((((TP63_HsapENSP00000264731:0.001872[&&NHX:D=N:T=9606],TP63_GgorENSGGOP00000020551:0.002754[&&NHX:D=N:T=9595])speciation:0.000918[&&NHX:D=N:T=207598:B=46:DD=],TP63_PtroENSPTRP00000027067:0.001869[&&NHX:D=N:T=9598])speciation:0.002874[&&NHX:D=N:T=207598:B=46:DD=],TP63_PabeENSPPYP00000016106:0.004542[&&NHX:D=N:T=9601])speciation:0.000913[&&NHX:D=N:T=9604:B=70:DD=],TP63_NleuENSNLEP00000008197:0.004734[&&NHX:D=N:T=61853])speciation:0.000949[&&NHX:D=N:T=314295:B=66:DD=],((TP63_MmulENSMMUP00000038274:0.003714[&&NHX:D=N:T=9544],TP63_CsabENSCSAP00000005295:0.026509[&&NHX:D=N:T=60711])speciation:0.0[&&NHX:D=N:B=31:T=9528:DD=],TP63_PanuENSPANP00000003169:0.001823[&&NHX:D=N:T=9555])speciation:0.010162[&&NHX:D=N:B=31:T=9528:DD=])speciation:0.010185[&&NHX:D=N:T=9526:B=95:DD=],TP63_CjacENSCJAP00000026376:0.015601[&&NHX:D=N:T=9483])speciation:0.013295[&&NHX:D=N:T=314293:B=100:DD=],TP63_MmurENSMICP00000022696:0.021271[&&NHX:D=N:T=30608])speciation:0.0[&&NHX:D=N:B=42:T=9443:DD=],(TP63_TsyrENSTSYP00000003403:0.025783[&&NHX:D=N:T=1868482],TP63_SaraENSSARP00000011553:0.056367[&&NHX:D=N:T=42254])speciation:0.010618[&&NHX:D=N:B=14:T=1437010:DD=])duplication:0.006497[&&NHX:DD=Y:B=1:T=1437010:D=])duplication:0.0[&&NHX:DD=Y:B=0:T=1437010:D=],(TP63_DnovENSDNOP00000012853:0.025753[&&NHX:D=N:T=9361],TP63_ChofENSCHOP00000009300:0.040693[&&NHX:D=N:T=9358])speciation:0.020456[&&NHX:D=N:B=76:T=9348:DD=])speciation:0.001941[&&NHX:D=N:T=9347:B=0:DD=],((TP63_LafrENSLAFP00000020806:0.016207[&&NHX:D=N:T=9785],TP63_PcapENSPCAP00000004708:0.030306[&&NHX:D=N:T=9813])speciation:0.00755[&&NHX:D=N:T=311790:B=91:DD=],TP63_EtelENSETEP00000001864:0.071017[&&NHX:D=N:T=9371])speciation:0.015236[&&NHX:D=N:T=311790:B=8:DD=])speciation:0.007477[&&NHX:D=N:B=0:T=9347:DD=])duplication:0.052158[&&NHX:DD=Y:B=0:T=9347:D=],((TP63_MdomENSMODP00000018831:0.034607[&&NHX:D=N:T=13616],TP63_MeugENSMEUP00000014131:0.045944[&&NHX:D=N:T=9315])speciation:0.011561[&&NHX:D=N:T=9263:B=100:DD=],TP63_SharENSSHAP00000008666:0.303146[&&NHX:D=N:T=9305])speciation:0.054652[&&NHX:D=N:B=12:T=9263:DD=])speciation:0.017647[&&NHX:D=N:B=2:T=32525:DD=],TP63_OanaENSOANP00000021753:0.079276[&&NHX:D=N:T=9258])speciation:0.043447[&&NHX:D=N:T=40674:B=2:DD=])speciation:0.034349[&&NHX:D=N:T=32524:B=0:DD=],tp63_XtroENSXETP00000055541:0.267401[&&NHX:D=N:T=8364])speciation:0.032348[&&NHX:D=N:B=0:T=32523:DD=],(ENSACAG00000002961_AcarENSACAP00000002870:0.0[&&NHX:D=N:T=28377],ENSACAG00000022533_AcarENSACAP00000021196:1.16541[&&NHX:D=N:T=28377])duplication:0.116614[&&NHX:D=Y:T=28377:B=0])duplication:0.005373[&&NHX:D=Y:T=32523:B=0],TP63_LchaENSLACP00000022643:0.17787[&&NHX:D=N:T=7897])speciation:0.031924[&&NHX:D=N:T=8287:B=0:DD=],(((((((tp63_PforENSPFOP00000001124:0.014737[&&NHX:D=N:T=48698],tp63_XmacENSXMAP00000016461:0.044393[&&NHX:D=N:T=8083])speciation:0.052269[&&NHX:D=N:B=99:T=586240:DD=],tp63_OlatENSORLP00000019616:0.105223[&&NHX:D=N:T=8090])speciation:0.020917[&&NHX:D=N:B=24:T=1489913:DD=],tp63_OnilENSONIP00000024326:0.065197[&&NHX:D=N:T=8128])speciation:0.01928[&&NHX:D=N:T=1489908:B=16:DD=],(tp63_TnigENSTNIP00000016776:0.042973[&&NHX:D=N:T=99883],tp63_TrubENSTRUP00000008025:0.048688[&&NHX:D=N:T=31033])speciation:0.043668[&&NHX:D=N:B=100:T=31031:DD=])speciation:0.020832[&&NHX:D=N:B=77:T=1489872:DD=],(ENSGACG00000013629_GacuENSGACP00000018012:0.069577[&&NHX:D=N:T=69293],ENSGMOG00000000413_GmorENSGMOP00000000401:0.110102[&&NHX:D=N:T=8049])speciation:0.067443[&&NHX:D=N:B=97:T=123368:DD=])duplication:0.040724[&&NHX:DD=Y:B=65:T=123368:D=],(tp63_AmexENSAMXP00000004961:0.092792[&&NHX:D=N:T=7994],tp63_DrerENSDARP00000108362:0.121291[&&NHX:D=N:T=7955])speciation:0.046115[&&NHX:D=N:T=186626:B=86:DD=])speciation:0.034365[&&NHX:D=N:T=186625:B=37:DD=],tp63_LocuENSLOCP00000006202:0.102939[&&NHX:D=N:T=7918])speciation:0.049371[&&NHX:D=N:B=52:T=41665:DD=])speciation:0.110844[&&NHX:D=N:B=0:T=117571:DD=],(((((((((((TP73_LafrENSLAFP00000005892:0.029578[&&NHX:D=N:T=9785],TP73_PcapENSPCAP00000000662:0.051492[&&NHX:D=N:T=9813])speciation:0.003183[&&NHX:D=N:T=311790:B=90:DD=],TP73_EtelENSETEP00000007165:0.095673[&&NHX:D=N:T=9371])speciation:0.033805[&&NHX:D=N:T=311790:B=0:DD=],TP73_DnovENSDNOP00000028722:0.457081[&&NHX:D=N:T=9361])speciation:0.006287[&&NHX:D=N:B=0:T=9347:DD=],((((((((TP73_BtauENSBTAP00000007643:0.009498[&&NHX:D=N:T=9913],TP73_OariENSOARP00000017005:0.019572[&&NHX:D=N:T=9940])speciation:0.012531[&&NHX:D=N:T=9895:B=100:DD=],ENSSSCG00000025685_SscrENSSSCP00000022771:0.057187[&&NHX:D=N:T=9823])speciation:0.018712[&&NHX:D=N:T=91561:B=1:DD=],TP73_TtruENSTTRP00000003223:0.039795[&&NHX:D=N:T=9739])speciation:0.015091[&&NHX:D=N:T=91561:B=0:DD=],(((TP73_AmelENSAMEP00000009745:0.040276[&&NHX:D=N:T=9646],TP73_MpfuENSMPUP00000007349:0.069423[&&NHX:D=N:T=9669])speciation:0.011068[&&NHX:D=N:B=5:T=379584:DD=],TP73_CfamENSCAFP00000028819:0.025289[&&NHX:D=N:T=9615])speciation:0.003214[&&NHX:D=N:B=4:T=379584:DD=],TP73_FcatENSFCAP00000010792:0.059719[&&NHX:D=N:T=9685])speciation:0.021832[&&NHX:D=N:B=20:T=33554:DD=])speciation:0.009094[&&NHX:D=N:T=314145:B=0:DD=],TP73_PvamENSPVAP00000008433:0.078992[&&NHX:D=N:T=132908])speciation:0.005352[&&NHX:D=N:T=314145:B=0:DD=],TP73_EeurENSEEUP00000011975:0.098606[&&NHX:D=N:T=9365])speciation:0.0[&&NHX:D=N:B=0:T=314145:DD=],TP73_EcabENSECAP00000001313:0.038035[&&NHX:D=N:T=9796])speciation:0.007356[&&NHX:D=N:T=314145:B=0:DD=],((((((Trp73_MsspMGP_SPRETEiJ_P0068738:0.0082[&&NHX:D=N:T=10096],Trp73_MmusENSMUSP00000101269:0.011834[&&NHX:D=N:T=10090])speciation:0.027464[&&NHX:D=N:B=100:T=862507:DD=],Tp73_RnorENSRNOP00000052265:0.034464[&&NHX:D=N:T=10116])speciation:0.085459[&&NHX:D=N:T=39107:B=100:DD=],TP73_ItriENSSTOP00000022492:0.061184[&&NHX:D=N:T=43179])speciation:0.008334[&&NHX:D=N:B=2:T=33553:DD=],Trp73_DordENSDORP00000013966:0.076743[&&NHX:D=N:T=10020])speciation:0.0[&&NHX:D=N:T=33553:B=0:DD=],TP73_CporENSCPOP00000009800:0.075508[&&NHX:D=N:T=10141])speciation:0.004958[&&NHX:D=N:T=9989:B=0:DD=],((TP73_MmurENSMICP00000031305:0.033995[&&NHX:D=N:T=30608],TP73_OgarENSOGAP00000005402:0.043894[&&NHX:D=N:T=30611])speciation:0.017054[&&NHX:D=N:T=376911:B=93:DD=],((((((TP73_GgorENSGGOP00000015180:0.00182[&&NHX:D=N:T=9595],TP73_HsapENSP00000367545:0.005775[&&NHX:D=N:T=9606])speciation:0.0[&&NHX:D=N:T=207598:B=92:DD=],TP73_PtroENSPTRP00000000118:0.05274[&&NHX:D=N:T=9598])speciation:0.005412[&&NHX:D=N:B=81:T=207598:DD=],TP73_PabeENSPPYP00000002277:0.013149[&&NHX:D=N:T=9601])speciation:0.000495[&&NHX:D=N:B=30:T=9604:DD=],TP73_NleuENSNLEP00000009887:0.326917[&&NHX:D=N:T=61853])speciation:0.010918[&&NHX:D=N:T=314295:B=0:DD=],((TP73_PanuENSPANP00000007545:0.004788[&&NHX:D=N:T=9555],TP73_CsabENSCSAP00000017283:0.012519[&&NHX:D=N:T=60711])speciation:0.000519[&&NHX:D=N:T=9528:B=86:DD=],TP73_MmulENSMMUP00000040655:0.025402[&&NHX:D=N:T=9544])speciation:0.013713[&&NHX:D=N:B=75:T=9528:DD=])speciation:0.010332[&&NHX:D=N:T=9526:B=0:DD=],TP73_CjacENSCJAP00000005070:0.291972[&&NHX:D=N:T=9483])speciation:0.022859[&&NHX:D=N:B=0:T=314293:DD=])speciation:0.014731[&&NHX:D=N:B=0:T=9443:DD=])speciation:0.020217[&&NHX:D=N:T=314146:B=0:DD=])speciation:0.01086[&&NHX:D=N:T=1437010:B=0:DD=])speciation:0.048685[&&NHX:D=N:T=9347:B=0:DD=],ENSSSCG00000003361_SscrENSSSCP00000003644:0.097446[&&NHX:D=N:T=9823])duplication:0.016508[&&NHX:D=Y:T=9347:B=0],((TP73_MeugENSMEUP00000000705:0.023362[&&NHX:D=N:T=9315],TP73_MdomENSMODP00000008216:0.259151[&&NHX:D=N:T=13616])speciation:0.035881[&&NHX:D=N:B=57:T=9263:DD=],TP73_SharENSSHAP00000006513:0.042193[&&NHX:D=N:T=9305])speciation:0.069704[&&NHX:D=N:T=9263:B=36:DD=])speciation:0.023293[&&NHX:D=N:T=32525:B=2:DD=],TP73_OanaENSOANP00000019815:0.30572[&&NHX:D=N:T=9258])speciation:0.017992[&&NHX:D=N:B=0:T=40674:DD=],(((((TP73_GgalENSGALP00000001485:0.002093[&&NHX:D=N:T=9031],TP73_MgalENSMGAP00000001059:0.036491[&&NHX:D=N:T=9103])speciation:0.047733[&&NHX:D=N:T=9005:B=100:DD=],TP73_AplaENSAPLP00000003415:0.02254[&&NHX:D=N:T=8839])speciation:0.021618[&&NHX:D=N:T=1549675:B=97:DD=],(TP73_TgutENSTGUP00000002829:0.010561[&&NHX:D=N:T=59729],TP73_FalbENSFALP00000010031:0.030208[&&NHX:D=N:T=59894])speciation:0.023763[&&NHX:D=N:T=9126:B=100:DD=])speciation:0.016346[&&NHX:D=N:B=97:T=8825:DD=],TP73_PsinENSPSIP00000004448:0.109544[&&NHX:D=N:T=13735])speciation:0.026517[&&NHX:D=N:T=1329799:B=84:DD=],TP73_AcarENSACAP00000001746:0.128451[&&NHX:D=N:T=28377])speciation:0.019965[&&NHX:D=N:B=67:T=32561:DD=])speciation:0.036745[&&NHX:D=N:T=32524:B=15:DD=],tp73_XtroENSXETP00000010981:0.182635[&&NHX:D=N:T=8364])speciation:0.011019[&&NHX:D=N:B=1:T=32523:DD=],TP73_LchaENSLACP00000021702:0.142378[&&NHX:D=N:T=7897])speciation:0.024057[&&NHX:D=N:B=0:T=8287:DD=],((((((tp73_TnigENSTNIP00000014938:0.027328[&&NHX:D=N:T=99883],tp73_TrubENSTRUP00000038165:0.032469[&&NHX:D=N:T=31033])speciation:0.059199[&&NHX:D=N:T=31031:B=100:DD=],tp73_GacuENSGACP00000008676:0.048591[&&NHX:D=N:T=69293])speciation:0.007086[&&NHX:D=N:T=1489922:B=29:DD=],(((tp73_PforENSPFOP00000010896:0.013197[&&NHX:D=N:T=48698],tp73_XmacENSXMAP00000017403:0.030558[&&NHX:D=N:T=8083])speciation:0.063838[&&NHX:D=N:B=100:T=586240:DD=],tp73_OlatENSORLP00000005521:0.062083[&&NHX:D=N:T=8090])speciation:0.017304[&&NHX:D=N:B=58:T=1489913:DD=],tp73_OnilENSONIP00000002627:0.053778[&&NHX:D=N:T=8128])speciation:0.014746[&&NHX:D=N:T=1489908:B=29:DD=])speciation:0.072637[&&NHX:D=N:B=14:T=1489872:DD=],tp73_GmorENSGMOP00000016675:0.181445[&&NHX:D=N:T=8049])speciation:0.038065[&&NHX:D=N:T=123368:B=98:DD=],(tp73_AmexENSAMXP00000014358:0.086906[&&NHX:D=N:T=7994],tp73_DrerENSDARP00000109674:0.134572[&&NHX:D=N:T=7955])speciation:0.064476[&&NHX:D=N:T=186626:B=100:DD=])speciation:0.04364[&&NHX:D=N:T=186625:B=43:DD=],tp73_LocuENSLOCP00000006343:0.115822[&&NHX:D=N:T=7918])speciation:0.046704[&&NHX:D=N:T=41665:B=14:DD=])speciation:0.167736[&&NHX:D=N:T=117571:B=27:DD=])duplication:0.067299[&&NHX:D=Y:B=0:T=117571],tp63_PmarENSPMAP00000007639:0.797694[&&NHX:D=N:T=7757])speciation:0.076045[&&NHX:D=N:T=7742:B=0:DD=],(('p53/p73-b CintENSCINP00000004447':0.450754[&&NHX:D=N:T=7719],ENSCSAVG00000009788_CsavENSCSAVP00000016659:0.47517[&&NHX:D=N:T=51511])speciation:0.378426[&&NHX:D=N:B=100:T=7718:DD=],(ENSCING00000001960_CintENSCINP00000003956:0.141945[&&NHX:D=N:T=7719],ENSCSAVG00000009964_CsavENSCSAVP00000016940:0.26284[&&NHX:D=N:T=51511])speciation:0.525939[&&NHX:D=N:T=7718:B=100:DD=])duplication:0.603292[&&NHX:D=Y:B=100:T=7718])duplication:0.0[&&NHX:D=N:T=7711:B=0:DD=];\",\n }\n\n // this make able the corner placement for all UI elements inside\n this.container_d3.style('position', 'relative')\n\n // remove previous placeholder & UI\n this.container_d3.selectAll(\".corner_placeholder\").remove()\n this.container_d3.selectAll(\".modal_data\").remove()\n this.remove_scale()\n this.remove_all_color_legend()\n this.container_d3.selectAll(\".menu_settings\").remove()\n this.container_d3.selectAll(\".empty_message\").remove()\n this.container_d3.select('#histogram-legend').remove();\n\n // remove old meta modal with document. function\n document.querySelectorAll('#modal_meta_' + this.container_object.uid).forEach((el) => { el.remove() })\n document.querySelectorAll('#exampleModal' + this.container_object.uid).forEach((el) => { el.remove() })\n\n this.container_d3.select(\"#menu-node\").remove()\n\n/*\n if (phylo.phylo_embedded && !empty_mode){\n\n tooltip_object[0].hide()\n tooltip_object[3].hide()\n\n\n }\n\n\n */\n\n\n if (empty_mode){\n this.top_left = this.add_top_left_container()\n this.add_data_icon()\n this.add_empty_message()\n return\n }\n\n // Create corner placeholder for UI elements\n this.bottom_left = this.add_bottom_left_container()\n this.bottom_right = this.add_bottom_right_container()\n this.top_left = this.add_top_left_container()\n this.top_right = this.add_top_right_container()\n\n // BOTTOM LEFT\n if (this.viewer.model.settings.use_branch_lenght) {\n this.scale_text = this.add_scale()\n }\n this.loader = this.bottom_left.append('text').style('color', 'red').style('font-size', 'small')\n if (this.container_object.message_loader){\n this.update_loader_message()\n }\n //this.add_root_badge()\n\n // BOTTOM RIGHT\n\n if (this.viewer.model.big_tree){\n this.add_rescale_zoom()\n }\n this.add_maximise()\n this.add_fit_height()\n this.add_zoom()\n\n // TOP LEFT\n if (!this.api.settings.phylostratigraphy) {\n if (this.container_object.models.length > 0) {\n this.add_toggle()\n }\n this.add_data_icon()\n }\n\n // TOP RIGHT\n this.add_search()\n this.add_export()\n this.add_meta()\n this.add_settings()\n this.add_undo()\n this.add_redo()\n\n\n\n // COLOR LEGEND\n if (this.api.settings.compareMode || (this.viewer.model.settings.style.color_accessor['node'] !== null && this.viewer.model.settings.style.color_accessor['node'] !== 'Topology' )){\n this.add_color_legend('node')\n }\n\n\n if (this.viewer.model.settings.style.color_accessor['leaf'] !== null && !this.viewer.model.settings.sync_coloring){\n\n this.viewer.model.set_color_scale('leaf', this.api)\n this.add_color_legend('leaf')\n }\n\n if (this.viewer.model.settings.style.color_accessor['circle'] !== null){\n\n this.viewer.model.set_color_scale('circle', this.api)\n this.add_color_legend('circle')\n }\n\n // Add Stack\n if (this.viewer.model.settings.has_histogram_data && this.viewer.model.settings.show_histogram){\n\n this.add_histogram_legend();\n\n }\n\n }\n\n // MODAL\n\n add_modal_edit_label(node, type){\n\n var mod_html = `\n <div class=\"modal\" id=\"exampleModal_edit\" tabindex=\"-1\">\n <div class=\"modal-dialog modal-dialog-centered modal-lg\">\n <div class=\"modal-content\">\n \n <div class=\"modal-header\" style=\"height: 128px;border:none !important\">\n <h3 class=\"modal-title\" id=\"exampleModalLabel\" style=\"margin: auto; text-align: center\">\n <b>Edit Label</b> <br>\n \n \n </h3>\n \n </div>\n \n <div class=\"modal-body\" style=\"background-color: #f8f9fa; padding: 24px 48px;\">\n \n \n \n <input type=\"text\" id=\"inputPassword6\" class=\"form-control mx-sm-3\" value=\"123456789\">\n \n \n \n \n \n </div>\n \n \n <div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-primary\" id=\"edit_modal_save\">Save changes</button>\n <button type=\"button\" class=\"btn btn-secondary\" id=\"edit_modal_close\" data-dismiss=\"modal\">Close</button>\n </div>\n \n \n </div>\n\n </div>\n </div>\n </div>\n`\n\n if (type == 'Default' || type == false){\n mod_html = mod_html.replace('123456789', node.data.name)\n }\n else{\n mod_html = mod_html.replace('123456789', node.data.extended_informations[type])\n }\n\n document.getElementById(this.container_object.div_id).insertAdjacentHTML('afterend',mod_html)\n\n document.getElementById('edit_modal_save').addEventListener('click', () => {\n\n\n if (type == 'Default' || type == false){\n node.data.name = document.getElementById('inputPassword6').value;\n }\n else{\n node.data.extended_informations[type] = document.getElementById('inputPassword6').value;\n }\n\n\n\n this.viewer.build_d3_cluster()\n this.viewer.render(node)\n\n document.getElementById('exampleModal_edit').remove()\n document.getElementsByClassName('modal-backdrop')[0].remove()\n\n })\n\n\n document.getElementById('edit_modal_close').addEventListener('click', () => {\n document.getElementById('exampleModal_edit').remove();\n document.getElementsByClassName('modal-backdrop')[0].remove()\n })\n\n\n }\n\n // PLACEHOLDER\n add_bottom_left_container() {\n return this.container_d3.append(\"div\")\n .attr(\"class\",\"corner_placeholder bottom left\")\n .style(\"flex-direction\", \"column\")\n }\n add_bottom_right_container(){\n return this.container_d3.append(\"div\")\n .attr(\"class\",\"corner_placeholder bottom right\")\n .style(\"flex-direction\", \"column\")\n .style( \"align-items\", \"flex-end\")\n }\n add_top_left_container(){\n return this.container_d3.append(\"div\")\n .attr(\"class\",\"corner_placeholder top left\")\n }\n add_top_right_container(){\n var div = this.container_d3.append(\"div\").attr(\"class\",\"corner_placeholder top right\")\n .style(\"flex-direction\",'column')\n .style(\"align-items\",'end')\n\n this.tr_buttons = div.append(\"div\").attr(\"class\",\"tr-button\").style(\"display\",'flex')\n\n this.tr_menus = div.append(\"div\").attr(\"class\",\"tr-menus\")\n\n return div\n }\n\n update_loader_message(){\n this.loader.text(this.container_object.message_loader)\n }\n\n\n add_histogram_legend() {\n\n\n d3__WEBPACK_IMPORTED_MODULE_1__.select('#histogram-legend').remove();\n\n var width = 230;\n var height = 80;\n var svgHeight = height + 25;\n var legendRectSize = 20;\n var left_margin = 25;\n var top_margin = 50;\n\n if (this.api.settings.phylostratigraphy){\n top_margin = 25;\n }\n\n var legendTxtSize = 13;\n // center text in the middle of the legend colored rectangle, rounding it to smaller Y-value\n var legendTxtYPadding = (legendRectSize + legendTxtSize) / 2\n\n if(this.viewer.model.settings.stack.type == \"genes\"){\n var dataLabels = [\"Gained\", \"Duplicated\", \"Retained\", \"Lost\" ]\n } else {\n var dataLabels = [\"Gains\", \"Duplications\", \"Losses\" ]\n }\n\n // to position legends correctly\n var rects = dataLabels.length - 1;\n\n\n var legendSvg = this.viewer.svg.append(\"svg\")\n .attr(\"id\", \"histogram-legend\")\n .attr(\"x\", left_margin)\n .attr(\"y\", top_margin)\n .attr(\"width\", width + \"px\")\n .attr(\"height\", svgHeight + \"px\")\n .append(\"g\")\n\n\n legendSvg.append(\"line\")\n .attr(\"x1\", 0)\n .attr(\"y1\", rects * legendRectSize)\n .attr(\"x2\", 200)\n .attr(\"y2\", rects * legendRectSize)\n .attr(\"class\", \"divline\")\n .attr(\"stroke-width\", 2)\n .attr(\"stroke\", \"black\");\n\n legendSvg.selectAll('rect')\n .data(dataLabels)\n .enter()\n .append('rect')\n .attr('x', 110)\n .attr('y', function(d, i){\n return i * legendRectSize;\n })\n .attr('width', legendRectSize)\n .attr('height', legendRectSize)\n .attr('fill', (d, i, node) => {\n return this.viewer.settings.stack.colorMap[d];\n });\n\n legendSvg.selectAll('text')\n .data(dataLabels)\n .enter()\n .append('text')\n .text(function(d){\n return d;\n })\n .attr('x', 110 + legendRectSize + 5)\n .attr('y', function(d, i){\n return i * legendRectSize + legendTxtYPadding;\n })\n .attr('text-anchor', 'start')\n .attr('alignment-baseline', 'baseline')\n .attr(\"font-size\", legendTxtSize).attr(\"stroke\", \"black\");\n\n\n legendSvg\n .append('text')\n .attr(\"class\", \"legendGeneTotal\")\n .text(\"Total # of \"+this.viewer.model.settings.stack.type)\n .attr('x', 0)\n .attr('y', rects * legendRectSize - 5)\n .attr('text-anchor', 'start')\n .attr(\"font-size\", legendTxtSize).attr(\"stroke\", \"black\");\n\n d3__WEBPACK_IMPORTED_MODULE_1__.selectAll(\".legendGeneTotal\").moveToFront();\n\n }\n\n // DATA ICON\n\n get_modal_adder_corpus(){\n return `\n \n <div class=\"container-fluid\">\n \n <div class=\"card\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 1: Add data from text or file</b> </h5>\n \n \n <div class=\"row\" style=\" margin-left: 24px\">\n <div class=\"col\" >\n <textarea class=\"form-control\" placeholder=\"Paste or type your tree here\" id=\"exampleFormControlTextarea1s\" rows=\"3\"></textarea>\n\n\n </div>\n <div class=\"col-1 my-auto \"><p class=\"align-middle\" style=\"margin: 0px;\"><b>OR</b></p></div>\n <div class=\"col my-auto\">\n\n <div class=\"input-group mb-3\" style=\"padding-left: 24px;\">\n <input class=\"form-control\" type=\"file\" id=\"add_tree_file_input\"> <div class=\"input-group-append\">\n </div>\n </div>\n\n\n </div>\n </div>\n\n <div class=\"row\" style=\"margin-left: 24px\">\n <div class=\"col\" >\n <h6 class=\"card-subtitle mb-2 text-muted\" style=\"margin-top: 6px\"><small>Example: <a href=\"#\" class=\"t1\">tree #1</a>, <a href=\"#\" class=\"t2\">tree #2</a>, <a href=\"#\" class=\"tbig\">big tree</a>, <a href=\"#\" class=\"nhx_ex\">Extended Newick</a>.</small></h6>\n </div>\n </div>\n \n </div>\n\n \n </div>\n \n <br>\n \n <div class=\"card\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 2: Choose tree data format </b> </h5>\n \n \n <div class=\"text-center\">\n\n <select class=\"custom-select\" id=\"add_tree_str_select\" style=\"margin-left: 24px;\">\n <option selected value=\"newick\">Newick</option>\n <option value=\"nhx\">Extended Newick</option>\n <option value=\"phyloxml\">PhyloXML</option>\n </select>\n\n\n </div>\n \n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"internal_for_branch\" >\n <label class=\"form-check-label\" for=\"flexCheckDefault\">\n Use internal label for branches (e.g. boostrap values)\n </label>\n </div>\n \n \n \n </div>\n\n \n </div>\n \n <br>\n \n \n \n <div class=\"card\">\n <div class=\"card-body\">\n <div style=\"cursor: pointer;\" id=\"toggleStep3\">\n <h5>\n <b>Step 3 (Optional): Add a mapping file</b>\n <a href=\"#\" id=\"menu_help_add_tree\">\n <i class=\"bi-question-circle\"></i>\n </a>\n <i class=\"bi-caret-down float-end\" id=\"caretStep3\"></i>\n <small class=\"float-end\" id=\"expandStep3\">Expand</small>\n </h5>\n </div>\n <br>\n <div id=\"collapseStep3\" style=\"display: none;\">\n STEP3__\n </div>\n </div>\n</div>\n \n <br>\n \n <div style=\"margin: auto; width: fit-content;\">\n \n \n <button type=\"button\" class=\"btn btn-danger\" data-bs-dismiss=\"modal\">Cancel</button>\n <button type=\"button\" id=\"modal_add_tree_final_button\" class=\"btn btn-success\" data-bs-dismiss=\"modal\" >Upload tree</button>\n \n </div>\n \n </div>\n \n \n \n `\n\n\n }\n\n add_data_icon() {\n\n this.container_d3.select(\"#exampleModal\" + this.container_object.uid).remove()\n\n var b = this.top_left.append('button')\n .attr('class', ' dashed_button')\n .attr('id', 'buttonmodal_' + this.container_object.div_id)\n .attr('data-bs-toggle', 'modal')\n .attr('data-bs-target', '#exampleModal' + this.container_object.uid)\n .attr('data-bs-placement', 'right')\n .attr('title', 'Add a new tree')\n .append(\"div\")\n .attr(\"class\", \"label\")\n\n b.html(\" <i class='bi bi-plus' style='color:#888'></i> Add tree\")\n\n let mod_html = this.get_modal_template()\n\n mod_html = mod_html.replace('TEMPLATE_CORPUS', this.get_modal_adder_corpus())\n mod_html = mod_html.replace('TITLE_', 'Upload your tree')\n mod_html = mod_html.replace('SUB_TITLE_', '')\n mod_html = mod_html.replace('STEP3__', this.get_modal_meta_corpus())\n\n\n mod_html = mod_html.replace('exampleFormControlTextarea1s', 'exampleFormControlTextarea1s' + this.container_object.uid)\n mod_html = mod_html.replace('add_tree_file_input', 'add_tree_file_input' + this.container_object.uid)\n mod_html = mod_html.replace('exampleModal', 'exampleModal' + this.container_object.uid)\n mod_html = mod_html.replace('add_tree_str_select', 'add_tree_str_select' + this.container_object.uid)\n mod_html = mod_html.replace('internal_for_branch', 'internal_for_branch' + this.container_object.uid)\n mod_html = mod_html.replace('modal_add_tree_final_button', 'modal_add_tree_final_button' + this.container_object.uid)\n mod_html = mod_html.replace('upload_mapping_close', 'upload_mapping_close' + this.container_object.uid)\n mod_html = mod_html.replace('upload_mapping_validation', 'upload_mapping_validation' + this.container_object.uid)\n\n // META CORPUS\n\n mod_html = mod_html.replaceAll('add_meta_file_input', 'tree_adder_modal_add_mapping_file_input' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card2', 'tree_adder_mod_meta_card2_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card3', 'tree_adder_mod_meta_card3_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card2_radio', 'tree_adder_mod_meta_card2_radio' + this.container_object.uid)\n\n mod_html = mod_html.replace('flexCheckChecked', 'tree_adder_flexCheckChecked' + this.container_object.uid)\n mod_html = mod_html.replace('flexCheckDefault', 'tree_adder_flexCheckDefault' + this.container_object.uid)\n\n mod_html = mod_html.replace('mapping_check_nodes', 'tree_adder_mapping_check_nodes' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_check_leaf', 'tree_adder_mapping_check_leaf' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_apply_to_all', 'tree_adder_mapping_apply_to_all' + this.container_object.uid)\n\n\n mod_html = mod_html.replaceAll('add_mapping_ref_select', 'add_mapping_ref_select' + this.container_object.uid)\n\n mod_html = mod_html.replace('collapseStep3', 'collapse3' + this.container_object.uid)\n mod_html = mod_html.replace('toggleStep3', 'toggle3' + this.container_object.uid)\n mod_html = mod_html.replace('caretStep3', 'caret3' + this.container_object.uid)\n mod_html = mod_html.replace('expandStep3', 'expand3' + this.container_object.uid)\n\n\n document.getElementById(this.container_object.div_id).insertAdjacentHTML('afterend', mod_html)\n\n // Add code for the toggle functionality\n\n const toggleElement = document.getElementById('toggle3' + this.container_object.uid);\n const contentElement = document.getElementById('collapse3' + this.container_object.uid);\n const caretElement = document.getElementById('caret3' + this.container_object.uid);\n const expandTextElement = document.getElementById('expand3' + this.container_object.uid);\n\n toggleElement.addEventListener('click', () => {\n const isHidden = contentElement.style.display === 'none';\n contentElement.style.display = isHidden ? 'block' : 'none';\n caretElement.className = isHidden ? 'bi-caret-up float-end' : 'bi-caret-down float-end';\n expandTextElement.textContent = isHidden ? 'Collapse' : 'Expand';\n });\n\n\n\n var modmod = document.getElementById('exampleModal' + this.container_object.uid);\n\n var thaty = this\n\n const add_tree_helpers = function (container_object, str, format, mapping) {\n\n var mapping = (typeof mapping == 'undefined') ? false : mapping;\n\n container_object.add_tree(str, {'data_type': format})\n container_object.current_model = container_object.models.length - 1\n\n // check if internal_for_branch is checked or not and setup default_internal_label_is_for_branch\n\n if (document.getElementById('internal_for_branch' + container_object.uid).checked) {\n container_object.models[container_object.current_model].settings.edge_related_data.push('Data');\n }\n\n if (mapping !== false) {\n\n if (mapping.parameters.apply_to_all) {\n\n // apply add_meta_leaves to all models in the container\n container_object.models.forEach((model) => {\n\n model.settings.use_meta_for_leaf = mapping.parameters.use_meta_for_leaf\n model.settings.use_meta_for_node = mapping.parameters.use_meta_for_node\n\n if (mapping.parameters.use_meta_for_leaf) {\n model.add_meta_leaves(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n if (mapping.parameters.use_meta_for_node) {\n model.add_meta_nodes(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n\n\n })\n\n }\n else {\n\n let moddy = container_object.models[container_object.current_model]\n\n moddy.settings.use_meta_for_leaf = mapping.parameters.use_meta_for_leaf\n moddy.settings.use_meta_for_node = mapping.parameters.use_meta_for_node\n\n if (moddy.settings.use_meta_for_leaf) {\n moddy.add_meta_leaves(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n\n if (moddy.settings.use_meta_for_node) {\n moddy.add_meta_nodes(mapping.meta, mapping.parameters.headers, container_object.api, mapping.parameters.reference)\n }\n\n\n }\n\n\n }\n\n\n document.querySelector('#exampleModal' + container_object.uid).style.display = 'none'\n document.querySelectorAll('.modal-backdrop').forEach(elem => {\n elem.parentNode.removeChild(elem);\n });\n container_object.viewer.set_data(container_object.models[container_object.current_model]);\n container_object.api.stop_all_workers()\n container_object.compute_topology_and_render_bounded_viewer()\n container_object.viewer.render(container_object.viewer.hierarchy);\n //container_object.viewer.update_collapse_level(container_object.models[container_object.current_model].settings.collapse_level)\n\n if (mapping) {\n thaty.open_color_settings()\n }\n\n\n if (thaty.api.settings.compute_distance && thaty.api.bound_container.includes(thaty)) {\n thaty.api.send_worker_distance()\n }\n }\n\n const add_data_from_modal = (format) => {\n\n // mapping information\n var mapping_file = document.getElementById('tree_adder_modal_add_mapping_file_input' + that.container_object.uid).files[0];\n\n\n let s = document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value\n\n if (s.length > 0) {\n\n if (mapping_file) {\n\n var parameters = that.get_mapping_parameter_from_UI(true)\n\n\n const reader = new FileReader();\n\n reader.addEventListener('load', (event) => {\n\n var meta = []\n var ref_id = parameters.reference\n\n if (mapping_file.name.split('.').pop() == 'tsv') {\n d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n } else {\n d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n }\n\n\n add_tree_helpers(this.container_object, s, format, {'meta': meta, 'parameters': parameters})\n return\n\n\n });\n reader.readAsText(mapping_file);\n\n\n } else {\n add_tree_helpers(this.container_object, s, format)\n return\n }\n\n\n }\n\n var file = document.getElementById('add_tree_file_input' + this.container_object.uid).files[0];\n\n if (file) {\n var reader = new FileReader();\n reader.readAsText(file, \"UTF-8\");\n reader.onload = (evt) => {\n\n if (mapping_file) {\n var parameters = that.get_mapping_parameter_from_UI(true)\n\n const reader = new FileReader();\n\n reader.addEventListener('load', (event) => {\n\n var meta = []\n\n var ref_id = parameters.reference\n\n\n if (mapping_file.name.split('.').pop() == 'tsv') {\n d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n } else {\n d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(event.target.result, (d) => {\n meta[d[ref_id]] = d\n });\n }\n\n add_tree_helpers(this.container_object, evt.target.result, format, {\n 'meta': meta,\n 'parameters': parameters\n })\n return\n\n\n });\n reader.readAsText(mapping_file);\n\n\n } else {\n add_tree_helpers(this.container_object, evt.target.result, format)\n return\n }\n\n\n }\n reader.onerror = function (evt) {\n console.log(\"error reading file\")\n }\n }\n\n\n }\n\n document.getElementById('modal_add_tree_final_button' + this.container_object.uid).onclick = () => {\n\n\n var e = document.getElementById('add_tree_str_select' + this.container_object.uid);\n\n add_data_from_modal(e.value)\n }\n\n modmod.getElementsByClassName('t1')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.small1\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('t1')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.small1\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('t2')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.small2\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('tbig')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.big\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'newick'\n };\n\n modmod.getElementsByClassName('nhx_ex')[0].onclick = () => {\n document.getElementById(\"exampleFormControlTextarea1s\" + this.container_object.uid).value = this.examples.nhx\n document.getElementById('add_tree_str_select' + this.container_object.uid).value = 'nhx'\n };\n\n\n // META DATA UPLOADER\n document.getElementById('upload_mapping_validation' + this.container_object.uid).style.display = 'none'\n document.getElementById('upload_mapping_close' + this.container_object.uid).style.display = 'none'\n\n\n var x = modmod.getElementsByClassName('card')\n for (var i = 0; i < x.length; i++) {\n x[i].style.border = 'none';\n }\n\n // Add JS for modal corpus\n var that = this\n\n document.getElementById('tree_adder_modal_add_mapping_file_input' + this.container_object.uid).onchange = function () {\n let input = this.files[0];\n\n if (input) {\n\n document.getElementById('tree_adder_mod_meta_card2_' + that.container_object.uid).style.display = 'block'\n document.getElementById('tree_adder_mod_meta_card3_' + that.container_object.uid).style.display = 'block'\n\n var reader = new FileReader();\n var data;\n\n reader.addEventListener(\"load\", parseFile, false);\n reader.readAsText(input);\n\n function parseFile() {\n\n // load data\n if (input.name.split('.').pop() == 'tsv') {\n data = d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(reader.result, function (d) {\n return d;\n });\n } else {\n\n data = d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(reader.result, function (d) {\n return d;\n });\n\n }\n\n\n // Get columns + types\n var numerisator = {}\n numerisator['id'] = 'cat'\n data['columns'].forEach((currentElement) => {\n if (currentElement != 'id') {\n numerisator[currentElement] = 'num'\n }\n })\n data.forEach((currentElement) => {\n for (var key of Object.keys(numerisator)) {\n if (isNaN(currentElement[key])) {\n numerisator[key] = 'cat'\n }\n }\n })\n\n\n // Add columns to select\n var select = document.getElementById('add_mapping_ref_select' + that.container_object.uid)\n select.innerHTML = '';\n\n for (var key of Object.keys(numerisator)) {\n var opt = document.createElement('option');\n opt.value = key;\n opt.innerHTML = key;\n select.appendChild(opt);\n }\n\n\n // creates radios\n var radio_container = document.getElementById('tree_adder_mod_meta_card2_radio' + that.container_object.uid)\n radio_container.innerHTML = '';\n\n var get_el = function () {\n return `\n \n <div style = \"padding: 12px 24px 0;\"> <span><b style = \"margin-right: 12px\" > Column: </b> \"NAME_\"</span> <br>\n\n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input \" name=\"flexRadioDefault\" type=\"radio\" value=\"num\" id=\"RADIO_1\" ATTR_NUM>\n <label class=\"form-check-label\" for=\"RADIO_1\">\n Numerical\n </label>\n </div>\n \n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"cat\" id=\"RADIO_2\" ATTR_CAT>\n <label class=\"form-check-label\" for=\"RADIO_2\">\n Categorical\n </label>\n </div>\n \n <div class=\"form-check\" style=\"margin-left: 24px\">\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"color\" id=\"RADIO_3\" ATTR_COLOR>\n <label class=\"form-check-label\" for=\"RADIO_3\">\n Color\n </label>\n </div>\n \n \n \n \n \n \n \n </div>\n `\n }\n\n // clean potential old radiobox\n\n for (var key of Object.keys(numerisator)) {\n\n var rad = get_el()\n\n\n rad = rad.replace('NAME_', key)\n rad = rad.replaceAll('flexRadioDefault', 'tree_adder_flexRadioDefault_' + key + that.container_object.uid)\n rad = rad.replace('RADIO_1', that.container_object.uid + 'mapping_header_radiotree_adder_1' + '__' + key)\n rad = rad.replace('RADIO_2', that.container_object.uid + 'mapping_header_radiotree_adder_2' + '__' + key)\n rad = rad.replace('RADIO_3', that.container_object.uid + 'mapping_header_radiotree_adder_3' + '__' + key)\n\n\n if (numerisator[key] === 'num') {\n rad = rad.replace('ATTR_NUM', 'checked')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', '')\n }\n if ((0,_utils__WEBPACK_IMPORTED_MODULE_3__.check_if_color)(key)) {\n rad = rad.replace('ATTR_NUM', '')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', 'checked')\n } else {\n rad = rad.replace('ATTR_NUM', 'disabled')\n rad = rad.replace('ATTR_CAT', 'checked')\n rad = rad.replace('ATTR_COLOR', '')\n }\n\n\n radio_container.insertAdjacentHTML('beforeend', rad)\n\n }\n radio_container.insertAdjacentHTML('beforeend', '<br>')\n\n }\n\n }\n\n };\n\n document.getElementById(\"menu_help_add_tree\").onclick = function () {\n $('#modal_help').modal('show');\n\n };\n\n\n }\n\n get_modal_template() {\n return `\n <div class=\"modal\" id=\"exampleModal\" tabindex=\"-1\">\n <div class=\"modal-dialog modal-dialog-centered modal-lg\">\n <div class=\"modal-content\">\n \n <div class=\"modal-header\" style=\"height: 128px;border:none !important\">\n <h3 class=\"modal-title\" id=\"exampleModalLabel\" style=\"margin: auto; text-align: center\">\n <b>TITLE_</b> <br>\n \n <small style=\"color:grey\">\n SUB_TITLE_\n </small>\n </h3>\n \n </div>\n \n <div class=\"modal-body\" style=\"background-color: #f8f9fa; padding: 24px 48px;\">\n \n \n TEMPLATE_CORPUS\n \n </div>\n \n \n </div>\n\n </div>\n </div>\n </div>\n`\n }\n\n open_color_settings(){\n document.getElementsByClassName('menu_settings')[0].style.display = 'block'\n document.getElementById('accordion_color' + this.container_object.uid).click()\n }\n\n\n\n // TOGGLE\n add_toggle(){\n var sub_div = this.top_left.append(\"div\")\n .style( \"display\", \"flex\")\n .style('margin', '2px')\n\n\n var butty_putty = sub_div.append('button')\n .on('click', d => {return this.container_object.shift_model(-1)})\n .attr('class', ' square_button')\n .attr('id', 'buttontoggleleft_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Load previous tree')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-chevron-left ')\n\n butty_putty.append('p')\n .text('Previous')\n .style('font-size', 'xx-small')\n\n this.tooltip_shiftleft = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttontoggleleft_' + this.container_object.div_id))\n\n\n\n var stoggle = sub_div.append('div')\n .attr('class', ' square_button screen_toggle')\n .style('min-width', '92px')\n .style('display', 'flex')\n .style('align-items', 'center')\n .style('width', 'auto')\n\n\n var sd = stoggle.append('div')\n\n\n\n\n sd.append(\"div\")\n .style('cursor', 'text')\n .attr('id', 'input_edit_name'+ this.container_object.uid)\n .attr(\"contenteditable\",\"true\")\n .attr(\"class\",\"label\")\n .style('display', 'inline')\n .text(this.viewer.model.settings.name)\n\n\n\n var ol = sd.append(\"ul\").attr('class', \"progress-indicator\" )\n .style('width', 'auto')\n .style('min-width', \"50px\")\n\n for (var i = 0; i < this.container_object.models.length; i++) {\n\n let li = ol.append('li')\n\n if (i == this.container_object.current_model){\n\n li.attr('class','completed' )\n\n }\n\n li.append('span')\n .attr('class','bubble' )\n\n }\n\n\n sub_div.append('button')\n .attr('class', 'square_button')\n .attr('id', 'button_edit_name_check'+ this.container_object.uid)\n .append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#fff')\n .attr('class', ' bi bi-check ')\n\n sub_div.append('button')\n .attr('class', 'square_button button_edit_name')\n .attr('id', 'button_edit_name_trash'+ this.container_object.uid)\n .append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#fff')\n .attr('class', ' bi bi-trash ')\n\n\n var butty_putty = sub_div.append('button')\n .attr('class', ' square_button')\n .on('click', d => { return this.container_object.shift_model(1)})\n .attr('id', 'buttonshiftright_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Load next tree')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-chevron-right ')\n\n butty_putty.append('p')\n .text('Next')\n .style('font-size', 'xx-small')\n\n this.tooltip_shiftright = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonshiftright_' + this.container_object.div_id))\n\n\n\n // bind events and action to editable div\n\n var edit_name = document.querySelector('#input_edit_name'+ this.container_object.uid);\n var edit_name_ok = document.querySelector('#button_edit_name_check'+ this.container_object.uid);\n var edit_name_trash = document.querySelector('#button_edit_name_trash'+ this.container_object.uid);\n\n edit_name.addEventListener(\"keypress\", (e) => {\n if (e.which == 13) {\n event.preventDefault();\n edit_name_ok.style.display = 'none';\n edit_name_trash.style.display = 'none';\n var old_name = this.viewer.model.get_name()\n\n var undo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [old_name]}\n var redo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [edit_name.textContent]}\n this.container_object.add_action(undo, redo, true)\n\n this.viewer.model.set_name(edit_name.textContent)\n return false;\n }\n\n\n //You can add delete key event code as well over here for windows users.\n //if(edit_name.textContent.length === 40 && e.keyCode != 8) {\n // e.preventDefault();\n //}\n });\n\n edit_name.addEventListener('focus', (event) => {\n edit_name_ok.style.display = 'inline';\n edit_name_trash.style.display = 'inline';\n });\n\n edit_name.addEventListener('blur', (event) => {\n setTimeout(() => {\n edit_name_ok.style.display = 'none';\n edit_name_trash.style.display = 'none';\n edit_name.textContent = this.viewer.model.get_name()\n }, 300);\n\n });\n\n\n edit_name_trash.addEventListener('click', (event) => {\n this.container_object.remove_current_tree(true)\n\n });\n\n edit_name_ok.addEventListener('click', (event) => {\n var old_name = this.viewer.model.get_name()\n\n var undo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [old_name]}\n var redo = {'name': 'Rename tree', 'fonction_obj': this.viewer.model, 'fonct': this.viewer.model.set_name, 'argu': [edit_name.textContent]}\n this.container_object.add_action(undo, redo, true)\n\n this.viewer.model.set_name(edit_name.textContent)\n\n });\n\n\n\n\n }\n\n add_rescale_zoom(){\n\n var butty_putty = this.bottom_right.append('button')\n .on('click', d => {\n\n this.viewer.force_zoom_rescaling = true;\n this.viewer.zoomed( {'transform':this.viewer.d3.zoomTransform(this.viewer.svg.node())});\n this.viewer.force_zoom_rescaling = false;\n })\n .attr('class', ' square_button')\n .attr('id', 'buttonscaleviewer_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Optimise text size')\n .style('margin', '2px')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-fonts ')\n\n butty_putty.append('p')\n .text('Optimise text')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n\n\n this.tooltip_fitviewer = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonscaleviewer_' + this.container_object.div_id))\n\n }\n\n add_fit_height() {\n\n var butty_putty = this.bottom_right.append('button')\n .on('click', d => {\n this.viewer.fit_to_viewer_height()\n })\n .attr('class', ' square_button')\n .attr('id', 'buttonfitviewer_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Optimise view (possible collapse/expand)')\n .style('margin', '2px')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-arrows-angle-contract ')\n\n butty_putty.append('p')\n .text('Optimise view')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n\n this.tooltip_fitviewer = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonfitviewer_' + this.container_object.div_id))\n\n }\n\n add_maximise() {\n\n var butty_putty= this.bottom_right.append('button')\n .on('click', d => {\n this.viewer.maximise_zoom()\n })\n .attr('class', ' square_button')\n .attr('id', 'button_maximise_zoom_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Fit tree into viewer (no collapse/expand)')\n .style('margin', '2px')\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-arrows-fullscreen ')\n\n butty_putty.append('p')\n .text('Fit screen')\n .style('font-size', 'xx-small')\n\n this.tooltip_fitviewer = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('button_maximise_zoom_' + this.container_object.div_id))\n\n }\n\n // BADGE ROOTING\n add_root_badge() {\n\n\n\n this.bottom_left.append('button')\n .attr('class', ' square_button')\n .style('padding', '4px')\n .style('margin', '2px')\n .style('cursor', 'default')\n .style('color', 'white')\n .style('background', 'rgb(136, 136, 136)')\n .append(\"div\")\n .on('click', d => { return this.container_object.toggle_rooting()})\n .attr(\"class\", \"label\")\n .append('small')\n .html(this.viewer.model.rooted ? 'Rooted Tree <i class=\\\"bi bi-sync-alt\\\"></i>' : 'Unrooted Tree <i class=\\\"bi bi-sync-alt\\\"></i> ')\n }\n\n // ZOOM\n add_zoom(){\n\n var butty_putty =this.bottom_right.append('button')\n .on('click', d => {return this.viewer.zoom_in()})\n .attr('class', ' square_button')\n .attr('id', 'buttonzoomplus_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Zoom in')\n .style('margin', '2px')\n\n\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-zoom-in ')\n\n butty_putty.append('p')\n .text('Zoom in')\n .style('font-size', 'xx-small')\n\n this.tooltip_zoomplus = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonzoomplus_' + this.container_object.div_id))\n\n\n var butty_putty = this.bottom_right.append('button')\n .on('click', d => {return this.viewer.zoom_out()})\n .attr('class', ' square_button')\n .style('margin', '2px')\n .attr('id', 'buttonzoomminus_' + this.container_object.div_id )\n .attr('data-bs-placement', 'left')\n .attr('title', 'Zoom out')\n\n\n\n butty_putty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-zoom-out ')\n\n butty_putty.append('p')\n .text('Zoom out')\n .style('font-size', 'xx-small')\n\n this.tooltip_zoomminus = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonzoomminus_' + this.container_object.div_id))\n\n }\n\n // SCALE\n add_scale(){\n\n var scaleLineLateralPadding = 10\n var scaleLineBottomPadding = 10\n\n\n var gg = this.viewer.svg_d3.node().append('g')\n .attr(\"class\", 'scale')\n .attr(\"transform\", \"translate(0,\" + (this.viewer.height - scaleLineBottomPadding) + \")\")\n\n gg.append(\"path\")\n .attr(\"d\", (d) => {return \"M\" + scaleLineLateralPadding + \",20L\" + (this.scale_pixel_length) + \",20\"})\n .attr(\"class\", 'scale_line')\n\n\n var scale_text = gg.append(\"text\")\n .attr(\"class\", 'scale_text')\n .attr(\"x\", this.scale_pixel_length/2)\n .attr(\"y\", 10)\n .attr(\"fill\", \"#555\")\n .attr('text-anchor', 'middle')\n .attr(\"dy\", \".2em\")\n .text(d => {return this.compute_scale()})\n\n\n return scale_text\n\n\n\n }\n remove_scale(){this.container_d3.select(\".scale\").remove()}\n\n update_scale_value(zoom_scale){\n this.scale_text.text(this.compute_scale(zoom_scale))\n\n }\n\n compute_scale(zoom_scale){\n var zoom_scale = zoom_scale || 1;\n return (this.viewer.scale_branch_length.invert(this.scale_pixel_length)/zoom_scale).toFixed(4);\n }\n\n //COLORING\n add_color_legend(type){\n\n\n var type = (typeof type !== 'undefined') && (type != 'both') ? type : 'node';\n\n var tt = this.viewer.model.settings.extended_data_type[this.viewer.model.settings.style.color_accessor[type]]\n var acc = this.viewer.model.settings.style.color_accessor[type];\n\n if ( tt === 'cat' || tt === 'color'){return}\n\n this.container_d3.select(\".colorlegend_\" + type).remove()\n\n let top_padding = 16;\n let left_padding = 16;\n let width = 16;\n let height = 100;\n let gutter = 8;\n let rect_height = height/100;\n\n var offset = type == 'node' ? (this.viewer.height/2) + 30 : type == 'leaf' ? this.viewer.height/2-height - 10 : this.viewer.height/2 - 2*height - 40;\n\n let gg = this.viewer.svg_d3.node().append('g')\n .attr(\"class\", 'colorlegend_' + type)\n\n\n var values = []\n\n if (this.viewer.model.settings.intercolor[type]) {\n for (let i = 0; i < 100; i++) {\n let n = this.viewer.model.settings.intercolor[type]((i / 100).toFixed(2));\n values.push(this.viewer.model.settings.colorScale[type](n));\n }\n }\n\n gg.selectAll(\"rect\")\n .data(values)\n .join(\"rect\")\n .attr(\"x\", left_padding)\n .attr(\"y\", (d, i) => offset + i)\n .attr(\"width\", width)\n .attr(\"height\", rect_height)\n .attr(\"fill\", d => d);\n\n gg.append(\"text\")\n .attr(\"x\", left_padding + width + gutter )\n .attr(\"y\", offset - 6 )\n .attr(\"fill\", \"#555\")\n .attr('text-anchor', 'start')\n .attr(\"dy\", \".2em\")\n .text(() => {\n var ms = this.viewer.model.settings.style;\n\n if (ms.color_accessor[type]){\n var n = ms.color_extent_max[type][ms.color_accessor[type]];\n return Number.isInteger(n) ? n : parseFloat(n).toFixed(3);\n\n }\n return 1\n })\n\n gg.append(\"text\")\n .attr(\"x\", left_padding + width + gutter )\n .attr(\"y\", offset + height + 10 )\n .attr(\"fill\", \"#555\")\n .attr('text-anchor', 'start')\n .attr(\"dy\", \".2em\")\n .text(() => {\n var ms = this.viewer.model.settings.style;\n\n if (ms.color_accessor[type]){\n\n var n;\n\n if (ms.color_extent_max[type][ms.color_accessor[type]] == ms.color_extent_min[type][ms.color_accessor[type]]){\n n = ms.color_extent_min[type][ms.color_accessor[type]]-1;\n }else{\n n = ms.color_extent_min[type][ms.color_accessor[type]];\n }\n\n\n return Number.isInteger(n) ? n : parseFloat(n).toFixed(3);\n\n }\n return 0\n })\n\n\n var xx = gutter\n var yy = offset\n\n yy += type == 'node' ? 5 : height;\n\n gg.append(\"text\")\n .attr(\"fill\", \"#555\")\n .attr('transform', \"translate(\"+xx+\", \" +yy+ \")rotate(-90)\")\n .attr('text-anchor', () => {return type == 'node' ? 'end' : 'start'})\n .attr(\"dy\", \".2em\")\n .text(() => {\n var ms = this.viewer.model.settings.style;\n return ms.color_accessor[type] ? ms.color_accessor[type] : \"Topology\"\n\n\n })\n\n }\n\n remove_color_legend(type){\n type = type == 'both' ? 'node' : type\n this.container_d3.select(\".colorlegend_\" + type).remove()\n }\n\n remove_all_color_legend(){\n this.container_d3.selectAll(\".colorlegend_node\").remove()\n this.container_d3.selectAll(\".colorlegend_leaf\").remove()\n this.container_d3.selectAll(\".colorlegend_circle\").remove()\n }\n\n // SEARCH\n\n autocomplete(inp, arr) {\n\n var that = this\n\n\n /*the autocomplete function takes two arguments,\n the text field element and an array of possible autocompleted values:*/\n var currentFocus;\n /*execute a function when someone writes in the text field:*/\n\n inp.addEventListener(\"input\", function(e) {\n var a, b, i, val = this.value;\n /*close any already open lists of autocompleted values*/\n closeAllLists();\n that.menu_settings.style(\"display\", \"none\");\n\n if (!val) { return false;}\n currentFocus = -1;\n /*create a DIV element that will contain the items (values):*/\n a = document.createElement(\"DIV\");\n a.setAttribute(\"id\", this.id + \"autocomplete-list\");\n a.setAttribute(\"class\", \"autocomplete-items\");\n /*append the DIV element as a child of the autocomplete container:*/\n this.parentNode.appendChild(a);\n /*for each item in the array...*/\n for (i = 0; i < arr.length; i++) {\n if (arr[i].toUpperCase().includes(val.toUpperCase()) ){\n //if (arr[i].substr(0, val.length).toUpperCase() === val.toUpperCase()) {\n /*create a DIV element for each matching element:*/\n b = document.createElement(\"DIV\");\n /*make the matching letters bold:*/\n var start_index = arr[i].toUpperCase().indexOf(val.toUpperCase())\n b.innerHTML += arr[i].substr(0, start_index);\n b.innerHTML += \"<strong>\" + arr[i].substr(start_index, val.length) + \"</strong>\";\n b.innerHTML += arr[i].substr(start_index + val.length);\n /*insert a input field that will hold the current array item's value:*/\n b.innerHTML += \"<input type='hidden' value='\" + arr[i] + \"'>\";\n /*execute a function when someone clicks on the item value (DIV element):*/\n b.addEventListener(\"click\", function(e) {\n /*insert the value for the autocomplete text field:*/\n that.dismiss_blur = true\n inp.value = this.getElementsByTagName(\"input\")[0].value;\n\n //document.getElementById('buttonsearch_' + this.container_object.div_id ).focus();\n that.container_object.highlight_node(inp.value)\n\n //that.viewer.maximise_zoom()\n\n /*close the list of autocompleted values,\n (or any other open lists of autocompleted values:*/\n closeAllLists();\n });\n a.appendChild(b);\n }\n }\n });\n /*execute a function presses a key on the keyboard:*/\n inp.addEventListener(\"keydown\", function(e) {\n var x = document.getElementById(this.id + \"autocomplete-list\");\n if (x) x = x.getElementsByTagName(\"div\");\n if (e.keyCode == 40) {\n /*If the arrow DOWN key is pressed,\n increase the currentFocus variable:*/\n currentFocus++;\n /*and and make the current item more visible:*/\n addActive(x);\n } else if (e.keyCode == 38) { //up\n /*If the arrow UP key is pressed,\n decrease the currentFocus variable:*/\n currentFocus--;\n /*and and make the current item more visible:*/\n addActive(x);\n } else if (e.keyCode == 13) {\n /*If the ENTER key is pressed, prevent the form from being submitted,*/\n e.preventDefault();\n if (currentFocus > -1) {\n /*and simulate a click on the \"active\" item:*/\n if (x) x[currentFocus].click();\n }\n }\n });\n function addActive(x) {\n /*a function to classify an item as \"active\":*/\n if (!x) return false;\n /*start by removing the \"active\" class on all items:*/\n removeActive(x);\n if (currentFocus >= x.length) currentFocus = 0;\n if (currentFocus < 0) currentFocus = (x.length - 1);\n /*add class \"autocomplete-active\":*/\n x[currentFocus].classList.add(\"autocomplete-active\");\n }\n function removeActive(x) {\n /*a function to remove the \"active\" class from all autocomplete items:*/\n for (var i = 0; i < x.length; i++) {\n x[i].classList.remove(\"autocomplete-active\");\n }\n }\n function closeAllLists(elmnt) {\n /*close all autocomplete lists in the document,\n except the one passed as an argument:*/\n var x = document.getElementsByClassName(\"autocomplete-items\");\n for (var i = 0; i < x.length; i++) {\n if (elmnt != x[i] && elmnt != inp) {\n x[i].parentNode.removeChild(x[i]);\n }\n }\n }\n /*execute a function when someone clicks in the document:*/\n document.addEventListener(\"click\", function (e) {\n closeAllLists(e.target);\n });\n\n\n }\n\n add_search(){\n\n\n this.container_d3.selectAll(\"#searchinp\" + this.viewer.uid).remove()\n\n // add input\n this.search_input = this.tr_buttons.append('input')\n .attr('class', ' search_input')\n .style('display', 'none')\n .style('height', '56px')\n .attr('id', \"searchinp\" + this.viewer.uid )\n\n var input_el = document.getElementById(\"searchinp\" + this.viewer.uid );\n\n // add search button\n var search_but = this.tr_buttons.append('button')\n .attr('class', ' square_button search_button')\n .attr('id', 'buttonsearch_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'search for label')\n .style('border-top-left-radius', '8px')\n .style('border-bottom-left-radius', '8px')\n .style('margin', '2px')\n .on(\"click\", d => {\n var display = input_el.style.display;\n\n if (display == 'none'){\n let search_el = document.getElementById('buttonsearch_' + this.container_object.div_id );\n\n input_el.style.display = 'inline-block';\n search_el.style.borderTopLeftRadius = '0px';\n search_el.style.borderBottomLeftRadius = '0px';\n }\n else{\n this.container_object.highlight_node(document.getElementById(\"searchinp\" + this.viewer.uid).value)\n //this.viewer.maximise_zoom()\n\n input_el.style.display = 'none';\n search_el.style.borderTopLeftRadius = '8px';\n search_el.style.borderBottomLeftRadius = '8px';\n document.getElementById('searchinp' + this.viewer.uid + 'autocomplete-list').remove();\n }\n })\n\n\n search_but.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', ' bi bi-search ')\n\n search_but.append('p')\n .text('Search')\n .style('font-size', 'xx-small')\n\n this.tooltip_search = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonsearch_' + this.container_object.div_id))\n\n\n\n let search_el = document.getElementById('buttonsearch_' + this.container_object.div_id );\n\n this.autocomplete(document.getElementById(\"searchinp\" + this.viewer.uid ), this.viewer.model.settings.suggestions)\n\n input_el.addEventListener(\"keyup\", ({key}) => {\n if (key === \"Enter\") {\n this.container_object.highlight_node(document.getElementById(\"searchinp\" + this.viewer.uid).value)\n //this.viewer.maximise_zoom()\n }\n })\n\n input_el.addEventListener(\"blur\", (e) => {\n\n setTimeout(() => {\n\n if (this.dismiss_blur){\n this.dismiss_blur = false\n\n }\n else{\n input_el.style.display = 'none';\n search_el.style.borderTopLeftRadius = '8px';\n search_el.style.borderBottomLeftRadius = '8px';\n document.getElementById('searchinp' + this.viewer.uid + 'autocomplete-list').remove();\n\n }\n }, 200);\n\n })\n\n\n }\n\n // META\n get_modal_meta_corpus(){\n return `\n\n <div class=\"container-fluid\">\n \n <div class=\"card\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 3.1: Select your mapping file</b> </h5>\n \n\n <div class=\"input-group mb-3\" style=\"padding: 24px 24px 0;\">\n <input class=\"form-control\" type=\"file\" id=\"add_meta_file_input\" > \n </div>\n \n <p style=\"padding: 0 24px;\"><small>\n <b>Accepted format:</b> .csv or .tsv with column names in the first row. Use the selector below to choose a reference column matching leaf or node names in the input file.\n </small></p>\n \n <div class=\"text-center\" style=\"margin-left: 48px;margin-right: 48px;\">\n \n <div class=\"form-floating\">\n <select class=\"form-select\" id=\"add_mapping_ref_select\" aria-label=\"Floating label select example\">\n <option value=\"id\" selected>id</option>\n </select>\n <label for=\"add_mapping_ref_select\">Select reference column name</label>\n </div>\n \n \n </div>\n \n \n\n </div>\n \n </div>\n\n <br>\n \n <div class=\"card\" id=\"mod_meta_card2\" style=\"display: none\">\n \n <div class=\"card-body\" id=\"mod_meta_card2_radio\" >\n \n <h5> <b>Step 3.2: Configure mapping data types</b> </h5>\n \n \n \n </div>\n \n </div>\n \n <br>\n \n <div class=\"card\" id=\"mod_meta_card3\" style=\"display: none\">\n \n <div class=\"card-body\">\n \n <h5> <b>Step 3.2: Choose a target for additional data</b> </h5>\n \n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"mapping_check_leaf\" checked>\n <label class=\"form-check-label\" for=\"flexCheckDefault\">\n Apply to leaves\n </label>\n </div>\n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"mapping_check_nodes\" checked>\n <label class=\"form-check-label\" for=\"flexCheckChecked\">\n Apply to Nodes\n </label>\n \n \n \n \n </div>\n \n <br>\n \n <h5> <b>Optional</b> </h5>\n \n <div class=\"form-check\" style=\"padding: 12px 48px 0;\">\n <input class=\"form-check-input\" type=\"checkbox\" value=\"\" id=\"mapping_apply_to_all\">\n <label class=\"form-check-label\" for=\"flexCheckDefault\">\n Apply to all trees\n </label>\n </div>\n \n\n </div>\n \n </div>\n \n <br>\n \n <div style=\"margin: auto; width: fit-content;\">\n \n <button type=\"button\" id=\"upload_mapping_close\" class=\"btn btn-danger\" data-bs-dismiss=\"modal\">Cancel</button>\n <button type=\"button\" id=\"upload_mapping_validation\" class=\"btn btn-success\" data-bs-dismiss=\"modal\" disabled >Upload mapping file</button>\n</div>\n \n \n \n </div>\n \n `\n }\n\n add_meta(){\n\n let mod_html = this.get_modal_template()\n\n\n mod_html = mod_html.replace('TEMPLATE_CORPUS', this.get_modal_meta_corpus())\n mod_html = mod_html.replace('TITLE_', 'Upload your own mapping file')\n mod_html = mod_html.replace('SUB_TITLE_', 'to add additional information to leaves and nodes')\n\n mod_html = mod_html.replace('exampleModal', 'modal_meta_' + this.container_object.uid)\n mod_html = mod_html.replaceAll('add_meta_file_input', 'modal_add_mapping_file_input' + this.container_object.uid)\n\n mod_html = mod_html.replace('mod_meta_card2', 'mod_meta_card2_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card3', 'mod_meta_card3_' + this.container_object.uid)\n mod_html = mod_html.replace('mod_meta_card2_radio', 'mod_meta_card2_radio' + this.container_object.uid)\n\n mod_html = mod_html.replace('flexCheckChecked', 'flexCheckChecked' + this.container_object.uid)\n mod_html = mod_html.replace('flexCheckDefault', 'flexCheckDefault' + this.container_object.uid)\n\n mod_html = mod_html.replace('upload_mapping_validation', 'upload_mapping_validation' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_check_nodes', 'mapping_check_nodes' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_check_leaf', 'mapping_check_leaf' + this.container_object.uid)\n mod_html = mod_html.replace('mapping_apply_to_all', 'mapping_apply_to_all' + this.container_object.uid)\n\n\n mod_html = mod_html.replaceAll('add_mapping_ref_select', 'add_mapping_ref_select_modal' + this.container_object.uid)\n\n mod_html = mod_html.replaceAll('Step 3.1', 'Step 1')\n mod_html = mod_html.replaceAll('Step 3.2', 'Step 2')\n\n document.getElementById(this.container_object.div_id).insertAdjacentHTML('afterend',mod_html)\n\n // Add JS for modal corpus\n var that = this\n\n document.getElementById('modal_add_mapping_file_input' + this.container_object.uid).onchange = function() {\n\n let input = this.files[0];\n\n if (input) {\n\n document.getElementById('mod_meta_card2_' + that.container_object.uid).style.display = 'block'\n document.getElementById('mod_meta_card3_' + that.container_object.uid).style.display = 'block'\n document.getElementById('upload_mapping_validation' + that.container_object.uid).disabled = false;\n\n\n var reader = new FileReader();\n var data;\n\n reader.addEventListener(\"load\", parseFile, false);\n reader.readAsText(input);\n function parseFile(){\n\n // load data\n if (input.name.split('.').pop() == 'tsv'){\n data = d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(reader.result, function(d){\n return d;\n });\n }\n else{\n\n data = d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(reader.result, function(d){\n return d;\n });\n\n }\n\n\n // Get columns + types\n var numerisator = {}\n numerisator['id'] = 'cat'\n data['columns'].forEach((currentElement) => { if (currentElement != 'id'){ numerisator[currentElement] = 'num'}})\n data.forEach((currentElement) => {\n for (var key of Object.keys(numerisator)) {\n if (isNaN(currentElement[key])){\n numerisator[key] = 'cat'\n }\n }\n })\n\n // Add columns to select\n var select = document.getElementById('add_mapping_ref_select_modal' + that.container_object.uid)\n select.innerHTML = ''\n for (var key of Object.keys(numerisator)){\n var opt = document.createElement('option');\n opt.value = key;\n opt.innerHTML = key;\n select.appendChild(opt);\n }\n\n\n\n // creates radios\n var radio_container = document.getElementById( 'mod_meta_card2_radio' + that.container_object.uid)\n radio_container.innerHTML = ''\n\n var get_el = function(){return `\n \n <div style = \"padding: 12px 24px 0;\"> <span><b style = \"margin-right: 12px\" > Column: </b> \"NAME_\"</span> <br>\n\n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input \" name=\"flexRadioDefault\" type=\"radio\" value=\"num\" id=\"RADIO_1\" ATTR_NUM>\n <label class=\"form-check-label\" for=\"RADIO_1\">\n Numerical\n </label>\n </div>\n \n <div class=\"form-check \" style=\"margin-left: 24px\" >\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"cat\" id=\"RADIO_2\" ATTR_CAT>\n <label class=\"form-check-label\" for=\"RADIO_2\">\n Categorical\n </label>\n </div>\n \n <div class=\"form-check\" style=\"margin-left: 24px\">\n <input class=\"form-check-input\" name=\"flexRadioDefault\" type=\"radio\" value=\"color\" id=\"RADIO_3\" ATTR_COLOR>\n <label class=\"form-check-label\" for=\"RADIO_3\">\n Color\n </label>\n </div>\n \n \n \n \n \n \n \n </div>\n `}\n\n for (var key of Object.keys(numerisator)){\n\n var rad = get_el()\n\n\n rad = rad.replace('NAME_', key)\n rad = rad.replaceAll('flexRadioDefault', 'flexRadioDefault_' + key + that.container_object.uid )\n rad = rad.replace('RADIO_1', that.container_object.uid + 'mapping_header_radio1' + '__' + key )\n rad = rad.replace('RADIO_2', that.container_object.uid + 'mapping_header_radio2' + '__' + key )\n rad = rad.replace('RADIO_3', that.container_object.uid + 'mapping_header_radio3' + '__' + key )\n\n\n if (numerisator[key] === 'num') {\n rad = rad.replace('ATTR_NUM', 'checked')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', '')\n }\n if ((0,_utils__WEBPACK_IMPORTED_MODULE_3__.check_if_color)(key)) {\n rad = rad.replace('ATTR_NUM', '')\n rad = rad.replace('ATTR_CAT', '')\n rad = rad.replace('ATTR_COLOR', 'checked')\n }\n else {\n rad = rad.replace('ATTR_NUM', 'disabled')\n rad = rad.replace('ATTR_CAT', 'checked')\n rad = rad.replace('ATTR_COLOR', '')\n }\n\n\n\n radio_container.insertAdjacentHTML('beforeend',rad)\n\n }\n radio_container.insertAdjacentHTML('beforeend','<br>')\n\n }\n\n }\n\n else {\n document.getElementById('upload_mapping_validation' + that.container_object.uid).disabled = true;\n }\n };\n\n document.getElementById('upload_mapping_validation' + this.container_object.uid).onclick = function(){\n\n\n var file = document.getElementById('modal_add_mapping_file_input' + that.container_object.uid).files[0];\n\n if (file) {\n\n var parameters = that.get_mapping_parameter_from_UI()\n\n const reader = new FileReader();\n\n reader.addEventListener('load', (event) => {\n\n var meta = []\n var ref_id = parameters.reference\n\n if (file.name.split('.').pop() == 'tsv'){\n d3__WEBPACK_IMPORTED_MODULE_1__.tsvParse(event.target.result, (d) => {meta[d[ref_id]] = d});\n }\n else{\n d3__WEBPACK_IMPORTED_MODULE_1__.csvParse(event.target.result, (d) => {meta[d[ref_id]] = d});\n }\n\n\n\n if (parameters.apply_to_all){\n // apply add_meta_leaves to all models in the container\n that.container_object.models.forEach((model) => {\n\n model.settings.use_meta_for_leaf = parameters.use_meta_for_leaf\n model.settings.use_meta_for_node = parameters.use_meta_for_node\n\n if (parameters.use_meta_for_leaf){\n model.add_meta_leaves(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n if (parameters.use_meta_for_node){\n model.add_meta_nodes(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n\n\n })\n\n }\n else {\n\n that.viewer.model.settings.use_meta_for_leaf = parameters.use_meta_for_leaf\n that.viewer.model.settings.use_meta_for_node = parameters.use_meta_for_node\n\n if (that.viewer.model.settings.use_meta_for_leaf){\n that.viewer.model.add_meta_leaves(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n\n if (that.viewer.model.settings.use_meta_for_node){\n that.viewer.model.add_meta_nodes(meta, parameters.headers, that.container_object.api, parameters.reference)\n }\n\n\n }\n\n that.viewer.interface = new Interface(that.viewer, that.viewer.container_object)\n\n that.open_color_settings()\n\n });\n reader.readAsText(file);\n\n }\n\n\n }\n\n\n // add the button\n var ex_b = this.tr_buttons.append('button')\n .attr('id', 'button_meta' + this.container_object.uid)\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Add additional informations to the tree')\n .attr('data-bs-toggle', 'modal')\n .attr('data-bs-target', '#modal_meta_' + this.container_object.uid )\n\n var divybuty = ex_b.attr('class', ' square_button')\n .style('margin', '2px')\n\n divybuty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi bi-file-earmark-medical')\n\n divybuty.append('p')\n .text('Mapping')\n .style('font-size', 'xx-small')\n\n\n }\n\n get_mapping_parameter_from_UI(modal){\n\n var modal = (typeof modal == 'undefined') ? false : modal;\n\n var p = {'headers': {}}\n\n if (modal){\n var prefix = this.container_object.uid + 'mapping_header_radiotree_adder_'\n }\n else{\n var prefix = this.container_object.uid + 'mapping_header_radio'\n }\n\n var checkies = document.querySelectorAll(`[id^=\"${prefix}\"]`);\n\n\n\n checkies.forEach(element => {\n\n if (element.checked) {\n var column_type = element.value\n var column_name = element.id.split('__').pop()\n\n\n p['headers'][column_name] = column_type\n }\n\n\n });\n\n if (modal){\n p['use_meta_for_node'] = document.getElementById( 'tree_adder_mapping_check_nodes' + this.container_object.uid).checked\n p['use_meta_for_leaf'] = document.getElementById( 'tree_adder_mapping_check_leaf' + this.container_object.uid).checked\n p['apply_to_all'] = document.getElementById( 'tree_adder_mapping_apply_to_all' + this.container_object.uid).checked\n p['reference'] = document.getElementById( 'add_mapping_ref_select' + this.container_object.uid).value\n }\n else{\n p['use_meta_for_node'] = document.getElementById( 'mapping_check_nodes' + this.container_object.uid).checked\n p['use_meta_for_leaf'] = document.getElementById( 'mapping_check_leaf' + this.container_object.uid).checked\n p['apply_to_all'] = document.getElementById( 'mapping_apply_to_all' + this.container_object.uid).checked\n p['reference'] = document.getElementById( 'add_mapping_ref_select_modal' + this.container_object.uid).value\n }\n\n\n return p\n }\n\n // EXPORT\n add_export() {\n\n // add the button\n var ex_b = this.tr_buttons.append('button')\n .attr('id', 'button_export' + this.container_object.uid)\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Export this tree as graphic or text file')\n\n var divybuty = ex_b.attr('class', ' square_button')\n .style('margin', '2px')\n .on(\"click\", d => {\n if (this.menu_export.style('display') === 'none') {\n this.menu_settings.style(\"display\", 'none') // make it more general to all menu/button\n ex_b.style('background-color', '#CCC');\n document.getElementById(\"button_settings\" + this.container_object.uid).style.backgroundColor = 'rgba(239, 239, 239, 0.95)';\n return this.menu_export.style(\"display\", 'block')\n }\n ex_b.style('background-color', 'rgba(239, 239, 239, 0.95)');\n return this.menu_export.style(\"display\", 'none')\n })\n\n divybuty.append(\"div\")\n .attr(\"class\", \"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi-file-earmark-arrow-up')\n\n divybuty.append('p')\n .text('Download')\n .style('font-size', 'xx-small')\n\n\n this.tooltip_export = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('button_export' + this.container_object.uid))\n\n\n // add the sub menu container\n this.menu_export = this.tr_menus.append('div')\n .style(\"background-color\", '#aaa')\n .attr('class', 'menu_export')\n\n\n // ADD THE ACCORDION SYSTEM\n\n this.menu_exportimage_b = this.menu_export.append('button').attr('class', 'accordion').text(\"Export as Graphic\")\n this.menu_exportimage_p = this.menu_export.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"6px\")\n\n this.export_as = this.menu_exportimage_p.append('div')\n .style('display', 'flex')\n\n this.export_as.append('button') // todo clean click\n .attr('class', ' square_button')\n .on(\"click\", d => {\n this.screen_shot('png')\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"PNG\")\n\n\n this.export_as.append('button')\n .attr('class', ' square_button')\n .on(\"click\", d => { // todo clean\n this.screen_shot('svg')\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"SVG\")\n\n\n this.menu_exportfile_b = this.menu_export.append('button').attr('class', 'accordion').text(\"Export as Text\")\n this.menu_exportfile_p = this.menu_export.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"6px\")\n\n this.export_as = this.menu_exportfile_p.append('div')\n .style('display', 'flex')\n\n this.export_as.append('button')\n .attr('class', ' square_button')\n .on(\"click\", d => {\n this.container_object.export_as_newick()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Newick\")\n\n this.export_as.append('button')\n .attr('class', ' square_button')\n .on(\"click\", d => {\n this.container_object.export_as_nhx()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"NHX\")\n\n }\n\n screen_shot(format) {\n\n var svg = this.viewer.d3.select(\"#svg\" + this.viewer.uid)\n this.addLogo(svg);\n var name = svg.attr(\"id\");\n var svgString = this.getSVGString(svg.node());\n\n if(format === 'svg') {\n\n var blob = new Blob([svgString], {\"type\": \"image/svg+xml;base64,\"+ btoa(svgString)});\n file_saver__WEBPACK_IMPORTED_MODULE_0__.saveAs(blob, name+\".svg\");\n svg.select(\"#exportLogo\").remove();\n\n }\n else if (format === 'png'){\n var exportElement = svg.node();\n var width = exportElement.getBoundingClientRect().width;\n var height = exportElement.getBoundingClientRect().height;\n this.svgString2Image(svgString, 2 * width, 2 * height, 'png', save);\n svg.select(\"#exportLogo\").remove();\n\n function save(dataBlob, filesize) {\n var filename = (name) ? name+\".\" : \"\";\n file_saver__WEBPACK_IMPORTED_MODULE_0__.saveAs(dataBlob, filename+'phylo.io.png'); // FileSaver.js function\n }\n\n }\n\n }\n\n // UNDO\n add_undo(){\n\n var divybuty = this.tr_buttons.append('button')\n .attr('class', ' square_button')\n .attr('id', 'buttonundo_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', d=> { return this.container_object.history_actions.length > 0 ? 'Undo ' + this.container_object.get_last_action().name : 'Nothing to undo' })\n .style('margin', '2px')\n .on(\"click\", d => {\n this.api.undoing = true;\n var cta = this.container_object.pop_last_action();\n cta = cta.undo\n if (cta && typeof cta.fonct === 'function') {\n cta.fonct.apply(cta.fonction_obj, cta.argu);\n\n if (cta.refresh_interface) {\n let empty = this.container_object.models.length <= 0;\n this.container_object.interface = new Interface(this.viewer, this.container_object, empty);\n }\n } else {\n console.error('Invalid cta or cta.fonct:', cta);\n }\n this.api.undoing = false;\n })\n\n\n\n\n\n divybuty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi-arrow-counterclockwise')\n\n divybuty.append('p')\n .text('Undo')\n .style('font-size', 'xx-small')\n\n this.tooltip_undo = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonundo_' + this.container_object.div_id))\n\n }\n\n add_redo(){\n\n var divybuty = this.tr_buttons.append('button')\n .attr('class', ' square_button')\n .attr('id', 'buttonredo_' + this.container_object.div_id )\n .attr('data-bs-placement', 'bottom')\n .attr('title', d=> { return this.container_object.history_actions.length > 0 ? 'Redo ' + this.container_object.get_last_action().redo.name : 'Nothing to redo' })\n .style('margin', '2px')\n .on(\"click\", d => {\n var cta = this.container_object.pop_redo_action();\n cta = cta.redo\n if (cta && typeof cta.fonct === 'function') {\n cta.fonct.apply(cta.fonction_obj, cta.argu);\n\n if (cta.refresh_interface) {\n let empty = this.container_object.models.length <= 0;\n this.container_object.interface = new Interface(this.viewer, this.container_object, empty);\n }\n } else {\n console.error('Invalid cta or cta.fonct:', cta);\n }\n })\n\n divybuty.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi-arrow-clockwise')\n\n divybuty.append('p')\n .text('Redo')\n .style('font-size', 'xx-small')\n\n this.tooltip_undo = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('buttonredo_' + this.container_object.div_id))\n\n }\n\n toggle_select_node_face(cid){\n\n var acc = document.getElementById(\"accordion_branch\"+cid)\n\n\n if (acc.classList.contains('active')) {\n\n document.getElementById('selectlt' + cid).style.display = 'block';\n document.getElementById('selectlb' + cid).style.display = 'block';\n document.getElementById('selectr' + cid).style.display = 'block';\n\n document.getElementById('selectlt' + cid).style.top = -90 + 'px';\n document.getElementById('selectlb' + cid).style.top = -40 + 'px';\n document.getElementById('selectr' + cid).style.top = -60 + 'px';\n\n document.getElementById('selectlt' + cid).style.left = '30px';\n document.getElementById('selectlb' + cid).style.left = '30px';\n document.getElementById('selectr' + cid).style.left = '130px';\n\n }\n else{\n document.getElementById('selectlt' + cid).style.display = 'none';\n document.getElementById('selectlb' + cid).style.display = 'none';\n document.getElementById('selectr' + cid).style.display = 'none';\n }\n }\n\n // SETTINGS\n add_settings() {\n\n // add the buttons\n var set_b = this.tr_buttons.append('button')\n .attr('data-bs-placement', 'bottom')\n .attr('title', 'Viewer settings')\n\n set_b.attr('class', ' square_button')\n set_b.attr('id', 'button_settings' + this.container_object.uid)\n .style('margin', '2px')\n .on(\"click\", d => {\n if (this.menu_settings.style('display') === 'none') { //make it as funtion\n this.menu_export.style(\"display\", 'none')\n set_b.style('background-color', '#CCC');\n document.getElementById(\"button_export\" + this.container_object.uid).style.backgroundColor = 'rgba(239, 239, 239, 0.95)';\n return this.menu_settings.style(\"display\", 'block')\n }\n set_b.style('background-color', 'rgba(239, 239, 239, 0.95)');\n return this.menu_settings.style(\"display\", 'none')\n })\n\n set_b.append(\"div\")\n .attr(\"class\",\"label\")\n .append('i')\n .style('color', '#888')\n .attr('class', 'bi bi-sliders')\n\n set_b.append('p')\n .text('Settings')\n .style('font-size', 'xx-small')\n\n\n\n this.tooltip_settings = new bootstrap__WEBPACK_IMPORTED_MODULE_2__.Tooltip(document.getElementById('button_settings' + this.container_object.uid))\n\n\n // add the menu\n this.menu_settings = this.tr_menus.append('div')\n .attr('class', 'menu_settings')\n\n\n // ADD THE ACCORDION SYSTEM todo close other when open one\n\n this.menu_general_b = this.menu_settings.append('button').attr('id', 'accordion_tree'+this.container_object.uid).attr('class', 'accordion').text(\"Tree\")\n this.menu_general_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n this.menu_tree_b = this.menu_settings.append('button').attr('id', 'accordion_branch'+this.container_object.uid).attr('class', 'accordion').text(\"Branches & Labels\")\n this.menu_tree_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n\n //this.menu_metadata_b = this.menu_settings.append('button').attr('id', 'accordion_color'+this.container_object.uid).attr('class', 'accordion').text(\"Additional Information\")\n //this.menu_metadata_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n this.menu_coloring_b = this.menu_settings.append('button').attr('id', 'accordion_color'+this.container_object.uid).attr('class', 'accordion').text(\"Coloring\")\n this.menu_coloring_panel = this.menu_settings.append('div').attr('class', 'panel').attr('id', 'coloring_panel' + this.container_object.uid)\n this.menu_coloring_p = this.menu_coloring_panel.append(\"div\").style(\"padding\", \"14px\").attr('id', 'coloring_p' + this.container_object.uid)\n\n this.menu_search_b = this.menu_settings.append('button').attr('id', 'accordion_branch'+this.container_object.uid).attr('class', 'accordion').text(\"Search options\")\n this.menu_search_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n if (this.viewer.model.settings.has_histogram_data && this.viewer.model.settings.show_histogram ) {\n this.menu_stack_b = this.menu_settings.append('button').attr('class', 'accordion').text(\"Bar Graph\")\n this.menu_stack_p = this.menu_settings.append('div').attr('class', 'panel').append(\"div\").style(\"padding\", \"14px\")\n\n\n\n this.slider_sts = this.add_slider_UI(this.menu_stack_p, \"Bar height\", 40, 300, this.viewer.model.settings.stack.stackHeight, 5, \"slider_stack_height_\",\n (e ) =>{this.viewer.update_stack_height(e.target.value)})\n\n this.slider_sts = this.add_slider_UI(this.menu_stack_p, \"Bar width\", 10, 150, this.viewer.model.settings.stack.stackWidth, 5, \"slider_stack_width_\",\n (e ) =>{this.viewer.update_stack_width(e.target.value)})\n\n this.slider_sts = this.add_slider_UI(this.menu_stack_p, \"Label size\", 6, 40, this.viewer.model.settings.stack.legendTxtSize, 1, \"slider_stack_text_size_\",\n (e ) =>{this.viewer.update_stack_font(e.target.value)})\n\n this.menu_stack_p.append(\"p\").text('Labels').style('margin-bottom', \"0px\")\n\n\n this.stack_type = this.menu_stack_p.append('div')\n .style('display', 'flex')\n .style('margin-bottom', \"14px\")\n\n\n\n this.stack_type.append('button') // todo clean click\n .attr('class', ' square_button')\n .attr('id', 'stack_type_events')\n .style('background-color', d => {return this.viewer.model.settings.stack.type === 'events' ? 'rgb(204, 204, 204)': null })\n .on(\"click\", d => {\n this.viewer.update_stack_type('events')\n this.viewer. d3.select(\"#stack_type_events\").style('background-color','rgb(204, 204, 204)')\n this.viewer.d3.select(\"#stack_type_genes\").style('background-color', null)\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Events\")\n\n\n this.stack_type.append('button')\n .attr('class', ' square_button')\n .attr('id', 'stack_type_genes')\n .style('background-color', d => {return this.viewer.model.settings.stack.type === 'genes' ? 'rgb(204, 204, 204)': null })\n .on(\"click\", d => {\n this.viewer.update_stack_type('genes')\n this.viewer.d3.select(\"#stack_type_genes\").style('background-color','rgb(204, 204, 204)')\n this.viewer.d3.select(\"#stack_type_events\").style('background-color', null)\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Genes\")\n\n this.add_swicth_UI(this.menu_stack_p, (this.viewer.model.settings.stack.maxStackHeight === 'ratio'),\"Fix stack height\", this.viewer.toggle_height_max_ratio.bind(this.viewer))\n\n this.add_swicth_UI(this.menu_stack_p, this.viewer.model.settings.stack.showHistogramValues,\"Show numbers\", this.viewer.toggle_show_stack_number.bind(this.viewer))\n\n if (this.viewer.model.settings.stack.has_support){\n this.add_swicth_UI(this.menu_stack_p, this.viewer.model.settings.stack.only_support,\"remove low coverage hogs\", this.viewer.toggle_only_support.bind(this.viewer))\n\n }\n\n\n\n\n }\n\n // ADD LOGIC TO ACCORDION todo add it general or to this div only\n var acc = document.getElementById(this.container_object.div_id).getElementsByClassName(\"accordion\");\n var that = this;\n var i;\n\n for (i = 0; i < acc.length; i++) {\n acc[i].addEventListener(\"click\", function(e) {\n\n this.classList.toggle(\"active\");\n\n var panel = this.nextElementSibling;\n if (panel.style.maxHeight) {\n panel.style.maxHeight = null;\n } else {\n panel.style.maxHeight = panel.scrollHeight + \"px\";\n }\n\n //that.toggle_select_node_face(that.container_object.uid)\n\n /*\n\n var checkExist = setInterval(function() {\n\n var obs_h = panel.style.maxHeight ? panel.getBoundingClientRect().height : 0\n var exp_h = panel.style.maxHeight ? panel.scrollHeight : 0\n\n if (obs_h == exp_h ) {\n that.toggle_select_node_face(that.container_object.uid)\n clearInterval(checkExist);\n }\n\n else {\n console.log(obs_h, exp_h )\n }\n }, 200);\n\n */\n\n });\n\n\n }\n\n // ADD TOGGLE BRANCH LENGTH\n if(this.viewer.model.settings.has_branch_lenght){\n this.add_swicth_UI(this.menu_general_p, !this.viewer.model.settings.use_branch_lenght,\"Ignore branch length\", this.viewer.toggle_use_length.bind(this.viewer))\n }\n\n this.add_swicth_UI(this.menu_general_p, this.viewer.model.settings.align_tip,\"Align leaves\", this.viewer.toggle_align_tip.bind(this.viewer))\n\n this.add_swicth_UI(this.menu_general_p, this.viewer.model.settings.mirror,\"Mirror tree\", this.viewer.toggle_mirror.bind(this.viewer))\n\n // ADD SLIDER RESIZE X/Y\n /*\n this.slider_v = this.add_slider_UI(this.menu_general_p, \"Tree height\", 2, 1000, this.viewer.model.settings.tree.node_vertical_size, 1, \"slider_node_vertical_size_\",\n (e ) =>{this.viewer.modify_node_size('vertical', e.target.value - this.viewer.model.settings.tree.node_vertical_size)})\n\n this.slider_h = this.add_slider_UI(this.menu_general_p, \"Tree width\", 2, 1000, this.viewer.model.settings.tree.node_horizontal_size, 1, \"slider_node_horyzontal_size_\",\n (e ) =>{this.viewer.modify_node_size('horizontal', e.target.value - this.viewer.model.settings.tree.node_horizontal_size)})\n */\n\n\n //this.buttons_height = this.add_quartet_buttons(this.menu_general_p, \"Tree height\", \"buton_vertical_size_\", this.container_object.modify_node_size_percent, 'vertical')\n //this.buttons_width = this.add_quartet_buttons(this.menu_general_p, \"Tree width\", \"buton_horyzontal_size_\", this.container_object.modify_node_size_percent, 'horizontal')\n\n this.add_quartet_buttons_single_line(this.menu_general_p, \"Tree height\", \"buton_vertical_size_\", this.container_object.modify_node_size_percent, 'vertical')\n this.add_quartet_buttons_single_line(this.menu_general_p, \"Tree width\", \"buton_horyzontal_size_\", this.container_object.modify_node_size_percent, 'horizontal')\n\n\n // ADD SELECT LEFT NODE LABEL\n this.add_node_face_UI(this.menu_tree_p, this.container_object.uid)\n\n // ADD TOGGLE INTERNAL LABEL\n //this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_internal_label,\"Show internal label\", this.viewer.toggle_internal_label.bind(this.viewer))\n\n\n // ADD TOGGLE show internal name for triangle\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.use_internal_node_name_for_triangles,\"Show collapsed subtrees name\", this.viewer.toggle_triangle_name.bind(this.viewer))\n\n // ADD TOGGLE tooltips\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.subsample_label,\"Subsample labels\", this.viewer.toggle_subsample.bind(this.viewer))\n\n // ADD TOGGLE LEAF LABEL\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_leaves,\"Show leaf labels\", this.viewer.toggle_leaves.bind(this.viewer))\n\n // ADD TOGGLE NODE LABEL\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_leaves,\"Show node labels\", this.viewer.toggle_node_labels.bind(this.viewer))\n\n // ADD TOGGLE tooltips\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.show_tooltips,\"Show data tooltips\", this.viewer.toggle_tooltips.bind(this.viewer))\n\n if (this.viewer.model.settings.has_duplications){\n // ADD TOGGLE DUPLICATION\n this.add_swicth_UI(this.menu_tree_p, this.viewer.model.settings.display_duplication,\"Show duplications\", this.viewer.toggle_duplication.bind(this.viewer))\n\n }\n\n //this.add_quartet_buttons(this.menu_tree_p, \"Node radius\", \"buton_node_radius_\", this.container_object.update_node_radius_percent )\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Node radius\", \"buton_node_radius_\", this.container_object.update_node_radius_percent)\n\n\n //this.add_quartet_buttons(this.menu_tree_p, \"Line width\", \"buton_line_width_\", this.container_object.update_line_width_percent)\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Line width\", \"buton_line_width_\", this.container_object.update_line_width_percent)\n\n\n\n // COLLAPSE\n this.slider_c = this.add_slider_UI(this.menu_general_p,\n this.viewer.model.settings.collapse_level == 0 ? \"Autocollapse: Off\" : \"Autocollapse: \" + this.viewer.model.settings.collapse_level,\n 0, this.viewer.model.settings.tree.max_depth , this.viewer.model.settings.collapse_level, 0,\"slider_collapse_level_\",)\n document.getElementById(\"slider_collapse_level_\" + this.container_object.uid).onchange = (e) => {\n\n\n this.viewer.update_collapse_level(e.target.value, false)\n var lab = e.target.value == 0 ? \"Autocollapse: Off\" : \"Autocollapse: \" + this.viewer.model.settings.collapse_level;\n\n document.getElementById(\"slider_collapse_level_\" + this.container_object.uid)\n .parentElement.previousSibling.innerHTML = lab;\n\n }\n\n\n if (this.api.settings.compareMode) {\n // equalize tree\n this.menu_general_p.append(\"p\").text('Equalize trees')\n .style('margin-bottom', '0px')\n\n\n this.equalize_div = this.menu_general_p.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.equalize_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'equ_reroot' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.reroot_to_compared_tree()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Reroot\")\n\n\n this.equalize_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'equ_reorder' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.reorder_to_compared_tree()\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Reorder\")\n }\n\n\n // ADD TOGGLE MULTIPLE SEARCH\n this.add_swicth_UI(this.menu_search_p, this.viewer.model.settings.multiple_search,\"Keep queries highlighted\", this.viewer.toggle_multiple_search.bind(this.viewer))\n\n // ADD reset search button\n\n this.search_button_div = this.menu_search_p.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.search_button_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'reset_search' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.remove_highlight_node();\n this.viewer.set_data(this.container_object.models[this.container_object.current_model])\n this.viewer.render(this.viewer.hierarchy)\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Reset search\")\n\n /*\n // ADDITIONAL DATA\n var meta_div = this.menu_metadata_p.append('div')\n .style('display','block')\n //.style('margin','8px')\n\n\n meta_div.append('p').text(\"Mapping file\").style('font-weight','bold')\n\n\n meta_div.append('input')\n .attr('id','filemeta' + this.container_object.uid )\n .attr('type','file')\n .style('margin-bottom','16px')\n\n\n this.add_swicth_UI(this.menu_metadata_p, this.viewer.model.settings.use_meta_for_leaf,\"Apply to leaves\", this.viewer.toggle_use_meta_for_leaf.bind(this.viewer) )\n this.add_swicth_UI(this.menu_metadata_p, this.viewer.model.settings.use_meta_for_node,\"Apply to nodes\", this.viewer.toggle_use_meta_for_node.bind(this.viewer))\n\n\n this.meta_div = this.menu_metadata_p.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.button_meta = this.meta_div.append('button')\n .attr('id','button_add_meta' + this.container_object.uid )\n .on(\"click\", (e) => {\n\n var file = document.getElementById('filemeta' + this.container_object.uid).files[0];\n\n if (file) {\n const reader = new FileReader();\n reader.addEventListener('load', (event) => {\n\n var meta = []\n\n d3.csvParse(event.target.result, (d) => {meta[d.id] = d});\n\n if (this.viewer.model.settings.use_meta_for_leaf){\n this.viewer.model.add_meta_leaves(meta)\n }\n\n if (this.viewer.model.settings.use_meta_for_node){\n this.viewer.model.add_meta_nodes(meta)\n }\n\n this.viewer.interface = new Interface(this.viewer, this.viewer.container_object)\n\n });\n reader.readAsText(file);\n\n }\n\n\n\n })\n .attr('class', ' square_button')\n .style('border-radius', '2px')\n .style('flex-grow', '1')\n .style('background-color', '#CCC')\n .text('Use this file')\n\n\n */\n\n\n // COLORING\n\n this.add_settings_coloring()\n\n }\n\n\n add_node_coloring_UI(container_div){\n\n var that = this;\n\n container_div.append('p').text(\"Nodes\").style('font-weight','bold').style('margin-top','8px')\n\n var drop = container_div.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n\n var options = Array.from(this.viewer.model.settings.colorlabels['node'])\n options.push(\"None\")\n\n if (options.length > 0){\n\n // SELECT DATA\n\n options.unshift('None')\n\n drop.append('label').text(\"Data\");\n\n var selectcoloring = drop.append('select')\n .attr('id','selectcoloringcircle' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n that.on_change_coloring_scheme('circle', this.value)\n })\n\n selectcoloring.selectAll('option').data(options).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.style.color_accessor['circle'] })\n .text(function (d) { return d; });\n\n\n this.color_circle_div = container_div.append('div')\n\n this.minmax_circle_div = container_div.append('div')\n\n\n if (this.viewer.model.settings.style.color_accessor['circle'] !== null) {\n\n this.create_color_scheme_picker('circle')\n\n this.create_min_max_picker('circle')\n }\n\n\n\n }\n else {\n drop.style('float','right').append('label').text(\"No Data available\");\n container_div.append('br')\n\n }\n\n }\n\n add_color_collapsing(container_div) {\n\n var that = this;\n\n // Add button for collapse uncolored taxon\n this.collapse_color_button_div = container_div.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n\n this.collapse_color_button_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'collapse_color_search' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.collapse_node_not_colored()\n this.viewer.build_d3_cluster()\n this.viewer.render(this.viewer.hierarchy)\n //this.viewer.maximise_zoom()\n })\n .style('margin', '12px 0px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Collapse uncolored subtrees \")\n\n // Add select for select uncolored\n\n var color_triangle_div = container_div.append('div')\n .style('display','flex')\n .style('float', 'right')\n\n\n var options_triangle = ['Leaves', 'Nodes', 'Both'];\n\n color_triangle_div.append('label')\n .text(\"Using\")\n .style('margin-right', '8px')\n\n var selectcoloring_triangle = color_triangle_div.append('select')\n .attr('id','selectcol_uncol' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n that.viewer.model.settings.selected_collapse_uncolored = this.value;\n\n /*\n that.container_object.collapse_node_not_colored()\n that.viewer.build_d3_cluster()\n that.viewer.render(that.viewer.hierarchy)\n that.viewer.maximise_zoom()\n\n */\n\n })\n\n\n selectcoloring_triangle.selectAll('option').data(options_triangle).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.selected_collapse_uncolored })\n .text(function (d) { return d; });\n\n container_div.append('br')\n\n\n // Add button for collapse unicolored taxon\n this.collapse_unicolor_button_div = container_div.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n\n this.collapse_unicolor_button_div.append('button')\n .attr('class', ' square_button')\n .attr('id', 'collapse_unicolor_search' + this.viewer.uid)\n .on(\"click\", d => {\n this.container_object.collapse_node_same_color()\n this.viewer.build_d3_cluster()\n this.viewer.render(this.viewer.hierarchy)\n //this.viewer.maximise_zoom()\n })\n .style('margin', '12px 0px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Collapse monocolored subtrees \")\n\n // Add select for select unicolored\n\n var color_unicolor_div = container_div.append('div')\n .style('display','flex')\n .style('float', 'right')\n\n var _options_triangle = ['Leaves', 'Nodes', 'Both'];\n\n color_unicolor_div.append('label')\n .text(\"Using\")\n .style('margin-right', '8px')\n\n var selectcoloring_mono = color_unicolor_div.append('select')\n .attr('id','selectcol_uncol' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n\n .on('change', function(){\n that.viewer.model.settings.selected_collapse_monocolored = this.value;\n /*\n that.container_object.collapse_node_same_color()\n that.viewer.build_d3_cluster()\n that.viewer.render(that.viewer.hierarchy)\n that.viewer.maximise_zoom()\n\n */\n })\n\n\n\n\n selectcoloring_mono.selectAll('option').data(_options_triangle).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.selected_collapse_monocolored })\n .text(function (d) { return d; });\n\n container_div.append('br')\n }\n\n add_settings_coloring(){\n\n var that = this;\n\n\n if (this.viewer.model.settings.sync_coloring){\n\n this.menu_coloring_p.append('p').text(\"Branches & Leaves\").style('font-weight','bold')\n\n var color_both_div = this.menu_coloring_p.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n var options_leaf = Array.from(this.viewer.model.settings.colorlabels['leaf'])\n var options_node = Array.from(this.viewer.model.settings.colorlabels['node'])\n\n var options = [...new Set( options_leaf.concat(options_node))]\n\n if (options.length > 0){\n\n // SELECT DATA\n options.unshift('None')\n color_both_div.append('label').text(\"Data\")\n\n var selectcoloring_both = color_both_div.append('select')\n .attr('id','selectcoloring_both' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n that.on_change_coloring_scheme('both', this.value)\n })\n\n selectcoloring_both.selectAll('option').data(options).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.style.color_accessor['node'] })\n .text(function (d) { return d; });\n\n\n this.color_leaf_both = this.menu_coloring_p.append('div')\n\n this.minmax_leaf_both = this.menu_coloring_p.append('div')\n\n this.create_color_scheme_picker('both')\n\n this.create_min_max_picker('both')\n\n }\n else {\n color_both_div.style('float','right').append('label').text(\"No Data available\");\n this.menu_coloring_p.append('br')\n\n }\n\n }\n\n else {\n this.menu_coloring_p.append('p').text(\"Leaf Labels\").style('font-weight','bold')\n\n var color_leaves_div = this.menu_coloring_p.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n var options = Array.from(this.viewer.model.settings.colorlabels['leaf'])\n\n\n if (options.length > 0){\n\n // SELECT DATA\n\n options.unshift('None')\n\n color_leaves_div.append('label').text(\"Data\")\n\n var selectcoloring_leaf = color_leaves_div.append('select')\n .attr('id','selectcoloring_leaf' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n that.on_change_coloring_scheme('leaf', this.value)\n\n })\n\n selectcoloring_leaf.selectAll('option').data(options).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.style.color_accessor['leaf'] })\n .text(function (d) { return d; });\n\n\n this.color_leaf_div = this.menu_coloring_p.append('div')\n\n this.minmax_leaf_div = this.menu_coloring_p.append('div')\n\n }\n else {\n color_leaves_div.style('float','right').append('label').text(\"No Data available\");\n this.menu_coloring_p.append('br')\n\n }\n\n if (this.viewer.model.settings.style.color_accessor['leaf'] !== null) {\n\n this.color_leaf_div = this.menu_coloring_p.append('div')\n\n this.minmax_leaf_div = this.menu_coloring_p.append('div')\n\n this.create_color_scheme_picker('leaf')\n\n this.create_min_max_picker('leaf')\n }\n\n\n this.menu_coloring_p.append('p').text(\"Branches\").style('font-weight','bold').style('margin-top','8px')\n\n var drop = this.menu_coloring_p.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n\n drop.append('label').text(\"Data\");\n\n var selectcoloring = drop.append('select')\n .attr('id','selectcoloring' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n that.on_change_coloring_scheme('node', this.value)\n\n })\n\n var options = Array.from(this.viewer.model.settings.colorlabels['node'])\n options.push(\"None\")\n\n if (this.viewer.model.settings.style.color_accessor['node'] !== null) {\n\n selectcoloring.selectAll('option').data(options).enter().append('option').attr('value', function (d) {\n return d;\n })\n .property(\"selected\", (d) => {\n return d == this.viewer.model.settings.style.color_accessor['node']\n })\n .text(function (d) {\n return d;\n });\n\n\n this.color_node_div = this.menu_coloring_p.append('div')\n\n this.minmax_node_div = this.menu_coloring_p.append('div')\n\n this.create_color_scheme_picker('node')\n\n this.create_min_max_picker('node')\n }\n }\n\n this.add_node_coloring_UI(this.menu_coloring_p)\n\n this.menu_coloring_p.append('hr').style('margin', '20px 0px 4px 0px')\n\n this.add_color_collapsing(this.menu_coloring_p)\n\n this.menu_coloring_p.append('hr').style('margin', '20px 0px 4px 0px')\n\n\n // add sync coloring\n this.add_swicth_UI(this.menu_coloring_p, this.viewer.model.settings.sync_coloring,\"Link branch & leaf coloring\", this.viewer.toggle_sync_coloring.bind(this.viewer))\n\n var color_triangle_div = this.menu_coloring_p.append('div')\n .style('display','block')\n //.style('margin-left','8px')\n\n var options_triangle = ['None', 'Leaves', 'Branches'];\n\n color_triangle_div.append('label').text(\"Color collapsed subtrees by\")\n\n var selectcoloring_triangle = color_triangle_div.append('select')\n .attr('id','selectcoloring_triangle' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n that.viewer.model.settings.selected_triangle_coloring = this.value;\n that.viewer.render(that.viewer.hierarchy)\n\n })\n\n selectcoloring_triangle.selectAll('option').data(options_triangle).enter()\n .append('option')\n .attr('value', function (d) {\n return d; })\n .property(\"selected\", (d) => { return d == this.viewer.model.settings.selected_triangle_coloring })\n .text(function (d) { return d; });\n }\n\n on_change_coloring_scheme(type, val){\n\n if (type == 'both'){\n this.viewer.model.settings.style.color_accessor['node'] = val === 'None' ? null : val;\n this.viewer.model.settings.style.color_accessor['leaf'] = val === 'None' ? null : val;\n var acc = this.viewer.model.settings.style.color_accessor['node']\n }\n else {\n this.viewer.model.settings.style.color_accessor[type] = val === 'None' ? null : val;\n\n var acc = this.viewer.model.settings.style.color_accessor[type]\n }\n\n\n\n if (!(acc in this.viewer.model.settings.style.number_domain)) {\n this.viewer.model.settings.style.number_domain[acc] = 2\n }\n\n this.create_color_scheme_picker(type)\n\n this.create_min_max_picker(type)\n\n if (type == 'both') {\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else{\n this.viewer.model.set_color_scale(type, this.api);\n }\n this.viewer.render(this.viewer.hierarchy)\n\n\n if (type == 'both') {\n this.remove_color_legend('node');\n this.remove_color_legend('leaf');\n }\n else{\n this.remove_color_legend(type);\n }\n\n\n\n if (type == 'both' && this.viewer.model.settings.style.color_accessor['node']) {\n this.add_color_legend('node')\n }\n else if (this.viewer.model.settings.style.color_accessor[type]){\n this.add_color_legend(type);\n }\n\n this.menu_coloring_panel.style(\"max-height\", this.menu_coloring_p.style(\"height\"))\n\n\n }\n\n create_color_scheme_picker(type){\n\n var that = this;\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] : this.viewer.model.settings.style.color_accessor[type]\n\n var type_acc = this.viewer.model.settings.extended_data_type[acc]\n\n if (type == 'leaf'){\n var container_ = this.color_leaf_div\n container_.html('')\n }\n\n else if (type == 'node'){\n var container_ = this.color_node_div\n container_.html('')\n\n\n }\n\n else if (type == 'both'){\n var container_ = this.color_leaf_both\n container_.html('')\n\n }\n else if (type == 'circle'){\n var container_ = this.color_circle_div\n container_.html('')\n }\n\n if (!acc){return}\n\n if (type_acc == 'num'){\n\n var domain_leaf = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n domain_leaf.append('label').text(\"Nb. of colors\");\n\n domain_leaf.append('input')\n .attr('id','inputcoloring_' + type + this.container_object.uid )\n .attr('type','number')\n .attr('name','quantity')\n .attr('min','2')\n .attr('value', this.viewer.model.settings.style.number_domain[acc])\n .attr('max','5')\n .style('float','right')\n .on('change', (d) => {\n\n delete this.viewer.model.settings.style.color_domain[acc]\n\n this.viewer.model.settings.style.number_domain[acc] = parseInt(document.getElementById('inputcoloring_' + type + this.container_object.uid ).value);\n this.create_color_picker(type)\n if (type == 'both') {\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else{\n this.viewer.model.set_color_scale(type, this.api);\n }\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n\n })\n\n\n var colcol = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n\n colcol.append('label').text(\"Color\");\n\n colcol.append(\"span\").attr('id',type + '_colorspan_' + this.container_object.uid );\n\n this.create_color_picker(type)\n\n }\n\n else if (type_acc == 'color' ){\n container_.append('label').text(\"Use color loaded\").style('float', 'right');\n container_.append('br')\n if (type == 'both') {\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else{\n this.viewer.model.set_color_scale(type, this.api);\n }\n this.viewer.render(this.viewer.hierarchy)\n }\n\n else if (type_acc == 'cat' || typeof type_acc == 'undefined'){\n\n var color_scheme_div = container_.append('div')\n .style('display','block')\n .style('margin-left','8px')\n\n var options = Object.keys(d3_scale_chromatic__WEBPACK_IMPORTED_MODULE_4__)\n .filter(key => key.startsWith('interpolate'))\n .reduce((acc, key) => { acc[key.replace('interpolate', '')] = d3__WEBPACK_IMPORTED_MODULE_1__[key]; return acc; }, {})\n\n var options_name = Object.keys(options)\n\n\n // SELECT DATA\n color_scheme_div.append('label').text(\"Color scheme\")\n\n var selectcoloring_both = color_scheme_div.append('select')\n .attr('id','selectcoloring_scheme' + this.container_object.uid )\n .attr('class','select')\n .style('float','right')\n .on('change', function(){\n\n if (type == 'both') {\n var cs = that.api.get_color_scale(that.viewer.model.settings.style.color_accessor['node']);\n cs.update_scheme(options[this.value], this.value );\n cs.update();\n that.viewer.model.set_color_scale('node', that.api);\n\n var cs = that.api.get_color_scale(that.viewer.model.settings.style.color_accessor['leaf']);\n cs.update_scheme(options[this.value], this.value );\n cs.update();\n that.viewer.model.set_color_scale('leaf', that.api);\n\n }\n else{\n var cs = that.api.get_color_scale(that.viewer.model.settings.style.color_accessor[type]);\n cs.update_scheme(options[this.value], this.value );\n cs.update();\n that.viewer.model.set_color_scale(type, that.api);\n\n }\n that.viewer.render(that.viewer.hierarchy)\n\n })\n\n var type_scheme = type == 'both' ? 'node' : type\n\n selectcoloring_both.selectAll('option').data(options_name).enter()\n .append('option')\n .attr('value', function (d) { return d })\n .property(\"selected\", (d) => { return d == this.api.get_color_scale(this.viewer.model.settings.style.color_accessor[type_scheme]).scheme_name })\n .text(function (d) { return d; });\n\n\n }\n\n else{\n container_.append('label').text(\"\");\n }\n\n\n\n\n}\n\n create_min_max_picker(type){\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] : this.viewer.model.settings.style.color_accessor[type]\n var type_acc = this.viewer.model.settings.extended_data_type[acc]\n\n\n if (type == 'leaf'){\n var container_ = this.minmax_leaf_div\n container_.html('')\n\n var val_min = this.viewer.model.settings.style.color_extent_min[type][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max[type][acc]\n }\n\n else if (type == 'node'){\n var container_ = this.minmax_node_div\n container_.html('')\n\n var val_min = this.viewer.model.settings.style.color_extent_min[type][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max[type][acc]\n }\n\n else if (type == 'circle'){\n var container_ = this.minmax_circle_div\n container_.html('')\n\n var max_ = this.viewer.model.settings.style.color_extent_max\n var min_ = this.viewer.model.settings.style.color_extent_min\n\n if (max_['circle'][acc] === undefined){\n max_['circle'][acc] = max_['node'][acc];\n }\n if (min_['circle'][acc] === undefined){\n min_['circle'][acc] = min_['node'][acc];\n }\n\n\n var val_min = this.viewer.model.settings.style.color_extent_min['circle'][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max['circle'][acc]\n\n }\n\n else if (type == 'both'){\n var container_ = this.minmax_leaf_both\n container_.html('')\n\n if (this.viewer.model.settings.style.color_extent_min['node'][acc] !=100000){\n var val_min = this.viewer.model.settings.style.color_extent_min['node'][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max['node'][acc]\n }\n else{\n var val_min = this.viewer.model.settings.style.color_extent_min['leaf'][acc]\n var val_max = this.viewer.model.settings.style.color_extent_max['leaf'][acc]\n }\n\n\n }\n\n if (type_acc == 'num'){\n\n var min_ = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n min_.append('label').text(\"Min scale value\");\n\n min_.append('input')\n .attr('type','number')\n .attr('name','quantity')\n .attr('min','-9999999999')\n .attr('value', val_min)\n .attr('max','9999999999')\n .style('float','right')\n .on('change', (d) => {\n\n if (type == 'both'){\n this.viewer.model.settings.style.color_extent_min['leaf'][acc] = parseFloat(d.target.value)\n this.viewer.model.settings.style.color_extent_min['node'][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend('node')\n this.remove_color_legend('leaf')\n this.add_color_legend('node')\n }\n\n else {\n this.viewer.model.settings.style.color_extent_min[type][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale(type, this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n }\n\n\n })\n\n var max_ = container_.append('div')\n .style('display','block')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n max_.append('label').text(\"Max scale value\");\n\n max_.append('input')\n .attr('type','number')\n .attr('name','quantity')\n .attr('min','-9999999999')\n .attr('value', val_max)\n .attr('max','9999999999')\n .style('float','right')\n .on('change', (d) => {\n if (type == 'both'){\n this.viewer.model.settings.style.color_extent_max['node'][acc] = parseFloat(d.target.value)\n this.viewer.model.settings.style.color_extent_max['leaf'][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend('node')\n this.remove_color_legend('leaf')\n this.add_color_legend('node')\n }\n else {\n this.viewer.model.settings.style.color_extent_max[type][acc] = parseFloat(d.target.value)\n\n this.viewer.model.set_color_scale(type, this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n }\n\n })\n\n // add button to auto setup min and max from other viewer. It need to accound for compare mode and for other contrainer\n\n if (this.api.settings.compareMode){\n\n var button_ = container_.append('div')\n .style('display','flex')\n .style('margin','8px')\n .style('margin-bottom','12px')\n\n button_.append('button')\n .attr('class', ' square_button')\n .attr('id', 'auto_minmax_' + type + this.container_object.uid)\n .on(\"click\", d => {\n\n // get the other compared container using bound_container and .viewer to select wich is the one bind to current interface and not\n // the one that is compared\n\n var con1 = this.api.bound_container[0]\n var con2 = this.api.bound_container[1]\n var other_viewer = con1.viewer == this.viewer ? con2.viewer.model.settings.style : con1.viewer.model.settings.style\n\n\n if (type == 'both'){\n\n\n this.viewer.model.settings.style.color_extent_max['node'][acc] = other_viewer.color_extent_max['node'][acc]\n this.viewer.model.settings.style.color_extent_max['leaf'][acc] = other_viewer.color_extent_max['leaf'][acc]\n\n this.viewer.model.settings.style.color_extent_min['node'][acc] = other_viewer.color_extent_min['node'][acc]\n this.viewer.model.settings.style.color_extent_min['leaf'][acc] = other_viewer.color_extent_min['leaf'][acc]\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend('node')\n this.remove_color_legend('leaf')\n this.add_color_legend('node')\n\n min_.select('input').property('value', this.viewer.model.settings.style.color_extent_min['leaf'][acc])\n max_.select('input').property('value', this.viewer.model.settings.style.color_extent_max['leaf'][acc])\n\n }\n else {\n this.viewer.model.settings.style.color_extent_max[type][acc] = other_viewer.color_extent_max[type][acc]\n this.viewer.model.settings.style.color_extent_min[type][acc] = other_viewer.color_extent_min[type][acc]\n\n this.viewer.model.set_color_scale(type, this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n\n min_.select('input').property('value', this.viewer.model.settings.style.color_extent_min[type][acc])\n max_.select('input').property('value', this.viewer.model.settings.style.color_extent_max[type][acc])\n }\n\n\n\n })\n .style('margin', '2px')\n .style('flex-grow', '1')\n .append(\"text\")\n .text(\"Auto min/max\")\n\n }\n\n }\n\n\n}\n\n create_color_picker(type){\n\n var colspan = d3__WEBPACK_IMPORTED_MODULE_1__.select(\"#\" + type + '_colorspan_' + this.container_object.uid)\n\n colspan.html(\"\")\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] : this.viewer.model.settings.style.color_accessor[type]\n var number = this.viewer.model.settings.style.number_domain[acc];\n\n if (!(acc in this.viewer.model.settings.style.color_domain)) {\n //this.viewer.model.settings.style.color_domain[acc] = this.viewer.model.settings.style.color_domain_default\n var default_color = this.viewer.model.settings.style.color_domain_default[acc] || this.viewer.model.settings.style.color_domain_default[\"DEFAULT\"];\n\n var w = Math.round(135/number);\n var color = []\n\n switch (number) {\n case 2:\n color = [default_color[0], default_color[4]]\n break;\n case 3:\n color = [default_color[0],default_color[2], default_color[4]]\n break;\n case 4:\n color = [default_color[0],default_color[1],default_color[2], default_color[4]]\n break;\n case 5:\n color = default_color\n\n }\n\n this.viewer.model.settings.style.color_domain[acc] = color\n }\n else {\n var color = this.viewer.model.settings.style.color_domain[acc]\n }\n\n\n\n for (let i = 0; i < number; i++) {\n var idd = type + '_color_picker_' + this.viewer.container_object.uid + '_' + i;\n colspan.append(\"span\").style('display',' inline-block').style('float','right')\n .html(\"<input class='colpicker_\" + type + \"' type=\\\"color\\\" id=\\\"\"+idd+\"\\\" style='width:\" + w +\"px;'name=\\\"favcolor\\\" value=\\\"\" + color[i] + \"\\\">\")\n\n d3__WEBPACK_IMPORTED_MODULE_1__.select(\"#\" + idd).on('change', () => {\n\n\n this.update_color_pickers(type)\n\n if (type == 'both'){\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n }\n else {\n this.viewer.model.set_color_scale(type, this.api);\n }\n\n this.viewer.model.set_color_scale('node', this.api);\n this.viewer.model.set_color_scale('leaf', this.api);\n this.viewer.render(this.viewer.hierarchy)\n this.remove_color_legend(type)\n this.add_color_legend(type)\n\n\n })\n\n }\n\n }\n\n update_color_pickers(type){\n\n var colspan = d3__WEBPACK_IMPORTED_MODULE_1__.select(\"#\" + type + '_colorspan_' + this.container_object.uid)\n\n\n var new_col = []\n colspan.selectAll(\".colpicker_\" + type).each(function(d){\n new_col.push(this.value)\n })\n\n var acc = type == 'both' ? this.viewer.model.settings.style.color_accessor['node'] :this.viewer.model.settings.style.color_accessor[type]\n\n this.viewer.model.settings.style.color_domain[acc] = new_col\n\n\n }\n\n add_swicth_UI(parent, checked, label, f){\n\n var lab = parent.append('label').style(\"display\", 'inline-block')\n .attr(\"class\",\"switch\")\n\n lab.append('input').attr('type', 'checkbox' ).property('checked', checked);\n lab.append('span').attr(\"class\",\"slider_t round\")\n .on('click', (d) => { f()} )\n\n parent.append('p').text(label).style(\"display\", 'inline-block').style(\"margin-left\", '12px')\n parent.append('br')\n\n }\n\n add_node_face_UI(parent,container_id){\n\n var w = 220;\n var h = 160;\n var gutter = 20\n\n var color_line = 'gray';\n\n var s = parent.append(\"svg\")\n .attr('display', 'block')\n .attr(\"width\", w )\n .attr(\"height\", h+ gutter)\n\n // vertical\n s.append('line')\n .attr(\"x1\", w/3)\n .attr(\"y1\", gutter)\n .attr(\"x2\", w/3)\n .attr(\"y2\", h-gutter)\n .attr(\"stroke\", color_line)\n\n // middle line\n s.append('line')\n .attr(\"x1\", gutter/2)\n .attr(\"y1\", h/2)\n .attr(\"x2\", w/3)\n .attr(\"y2\", h/2)\n .attr(\"stroke\", color_line)\n\n s.append('circle')\n .attr('cx', w/3)\n .attr('cy', h/2)\n .attr('r', 5)\n .attr('stroke', 'black')\n .attr('fill', '#69a3b2');\n\n s.append(\"text\")\n .attr(\"x\", w/3 - gutter)\n .attr(\"y\", h/2 - gutter)\n .attr(\"dy\", \".35em\")\n .text('A');\n\n s.append(\"text\")\n .attr(\"x\", w/3 + gutter)\n .attr(\"y\", h/2 )\n .attr(\"dy\", \".35em\")\n .text('B');\n\n s.append(\"text\")\n .attr(\"x\", w/3 - gutter)\n .attr(\"y\", h/2 + gutter)\n .attr(\"dy\", \".35em\")\n .text('C');\n\n\n\n // top horizontal\n s.append('line')\n .attr(\"stroke\", color_line)\n .attr(\"x1\", w/3)\n .attr(\"y1\", gutter)\n .attr(\"x2\", w-3*gutter)\n .attr(\"y2\", gutter);\n\n s.append(\"text\")\n .attr(\"x\", w-2.5*gutter)\n .attr(\"y\", gutter - 4)\n .attr(\"dy\", \".35em\")\n .text('...');\n\n // bottom horizontal\n s.append('line')\n .attr(\"stroke\", color_line)\n .attr(\"x1\", w/3)\n .attr(\"y1\", h-gutter)\n .attr(\"x2\", w-3*gutter)\n .attr(\"y2\", h-gutter);\n\n\n s.append('circle')\n .attr('cx', w-3*gutter)\n .attr('cy', h-gutter)\n .attr('r', 2)\n .attr('fill', 'black');\n\n s.append(\"text\")\n .attr(\"x\", w-2*gutter)\n .attr(\"y\", h-gutter)\n .attr(\"dy\", \".35em\")\n .text('E');\n\n s.append(\"text\")\n .attr(\"x\", w-4*gutter)\n .attr(\"y\", h-2*gutter)\n .attr(\"dy\", \".35em\")\n .text('D');\n\n s.append(\"text\")\n .attr(\"x\", w-4*gutter)\n .attr(\"y\", h)\n .attr(\"dy\", \".35em\")\n .text('F');\n\n\n\n\n // NODE DATUM\n\n parent.append(\"p\").text('Node labels')\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n\n\n var l = Array.from(this.viewer.model.settings.labels['node'])\n\n var options = [\"None\", 'Topology']\n options = options.concat(l)\n\n var that = this\n\n parent.append('text').style('display','inline').text('A').style('margin-right','4px').style('margin-left','12px')\n var selectlt = parent.append('select').attr('id','selectlt' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_internal_label_left_top = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('B').style('margin-right','4px').style('margin-left','12px')\n var selectr = parent.append('select').attr('id','selectr' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_internal_label = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('C').style('margin-right','4px').style('margin-left','12px')\n var selectlb = parent.append('select').attr('id','selectlb' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_internal_label_left_bottom = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n selectlt.selectAll('option').data(options).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectlb.selectAll('option').data(options).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectr.selectAll('option').data(options).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Font size\", \"buton_node_label_\", this.container_object.update_font_size_node_percent)\n\n\n parent.append('br')\n\n // LEAF DATUM\n\n parent.append(\"p\").text('Leaf labels')\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n\n\n var l2 = Array.from(this.viewer.model.settings.labels['leaf'])\n\n var options2 = [\"None\"]\n options2 = options2.concat(l2)\n\n var options2_name = [\"Default\"]\n options2_name = options2_name.concat(l2)\n\n var that = this\n\n parent.append('text').style('display','inline').text('D').style('margin-right','4px').style('margin-left','12px')\n var selectltl = parent.append('select').attr('id','selectltl' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_leaf_label_left_top = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('E').style('margin-right','4px').style('margin-left','12px')\n var selectrl = parent.append('select').attr('id','selectrl' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_leaf_label = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n parent.append('br')\n\n parent.append('text').style('display','inline').text('F').style('margin-right','4px').style('margin-left','12px')\n var selectlbl = parent.append('select').attr('id','selectlbl' + container_id ).attr('class','select_node_face').on('change', function(){\n\n var value = this.value === 'None' ? false : this.value\n\n that.viewer.model.settings.display_leaf_label_left_bottom = value\n\n that.viewer.render(that.viewer.hierarchy)\n\n })\n\n\n\n selectltl.selectAll('option').data(options2).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectlbl.selectAll('option').data(options2).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n selectrl.selectAll('option').data(options2_name).enter().append('option').attr('value', function (d) { return d; }).text(function (d) { return d; });\n\n this.add_quartet_buttons_single_line(this.menu_tree_p, \"Font size\", \"buton_leaf_label_size_\", this.container_object.update_font_size_leaf_percent)\n\n parent.append('br')\n\n\n function selectElement(id, valueToSelect) {\n let element = document.getElementById(id);\n element.value = valueToSelect;\n }\n\n selectElement('selectr' + container_id, this.viewer.model.settings.display_internal_label == false ? \"None\" : this.viewer.model.settings.display_internal_label )\n selectElement('selectlb' + container_id, this.viewer.model.settings.display_internal_label_left_bottom == false ? \"None\" : this.viewer.model.settings.display_internal_label_left_bottom )\n selectElement('selectlt' + container_id, this.viewer.model.settings.display_internal_label_left_top == false ? \"None\" : this.viewer.model.settings.display_internal_label_left_top )\n\n selectElement('selectrl' + container_id, this.viewer.model.settings.display_leaf_label == false ? \"Default\" : this.viewer.model.settings.display_leaf_label )\n selectElement('selectlbl' + container_id, this.viewer.model.settings.display_leaf_label_left_bottom == false ? \"None\" : this.viewer.model.settings.display_leaf_label_left_bottom )\n selectElement('selectltl' + container_id, this.viewer.model.settings.display_leaf_label_left_top == false ? \"None\" : this.viewer.model.settings.display_leaf_label_left_top )\n\n\n }\n\n add_quartet_buttons_single_line(parent, label, id, f, aux){\n\n var f = f || function(){};\n var aux = aux || null;\n\n var container = parent.append('div')\n .style('display', 'flex')\n .style('align-items', 'center');\n\n container.append(\"p\").text(label)\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n .style('font-size','small')\n .style('margin-right','8px')\n\n var buttons = container.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n .style('margin-bottom', '4px')\n\n\n var butty_putty1 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'first' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n\n butty_putty1.append('p')\n .text('- 50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n var butty_putty2 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'second' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty2.append('p')\n .text('- 20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n var butty_putty3 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'third' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n\n butty_putty3.append('p')\n .text('+ 20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n\n var butty_putty4 = buttons.append('button')\n .attr('class', ' square_button mini')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'fourth' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty4.append('p')\n .text('+ 50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n return buttons\n\n\n\n }\n\n add_quartet_buttons(parent, label, id, f, aux){\n\n var f = f || function(){};\n var aux = aux || null;\n\n parent.append(\"p\").text(label)\n .style('margin-bottom','0px')\n .style('font-weight','bold')\n\n var buttons = parent.append('div')\n .style('display', 'flex')\n .style('margin-top', '0px')\n .style('margin-bottom', '4px')\n\n\n var butty_putty1 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'first' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n butty_putty1.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '12px')\n .attr('class', ' bi bi-dash ')\n\n butty_putty1.append('p')\n .text('-50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n var butty_putty2 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'second' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,-0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n butty_putty2.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '8px')\n .attr('class', ' bi bi-dash ')\n\n butty_putty2.append('p')\n .text('-20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n var butty_putty3 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'third' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.20, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty3.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '8px')\n .attr('class', ' bi bi-plus ')\n\n butty_putty3.append('p')\n .text('+20%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n\n\n var butty_putty4 = buttons.append('button')\n .attr('class', ' square_button')\n .style('border-radius', '0px')\n .style('padding', '2px')\n .attr('id', id + 'fourth' + this.container_object.uid )\n .on(\"click\", (e) => f.call(this.container_object,0.50, aux ) )\n .style('margin', '2px')\n .style('flex-grow', '1')\n\n\n\n butty_putty4.append(\"div\").append('i')\n .style('color', '#888')\n .style('font-size', '12px')\n .attr('class', ' bi bi-plus ')\n\n butty_putty4.append('p')\n .text('+50%')\n .style('font-size', 'xx-small')\n .style('line-height', 'normal')\n .style('margin-bottom', '4px')\n\n return buttons\n\n\n\n }\n\n add_slider_UI(parent, label, min, max, current, step, id, f){\n\n var f = f || function(){};\n\n parent.append(\"p\").text(label).style('margin-bottom','0px').style('font-weight','bold')\n\n var d = parent.append('div')\n .attr(\"class\",\"slidecontainer\")\n\n var input = d.append('input').attr(\"class\",\"slider\")\n .attr('type', 'range' )\n .attr('min', min )\n .attr('max', max )\n .attr('value', current )\n //.attr('step', step )\n .attr('id', id + this.container_object.uid )\n .on('click', (e) => { f(e)} )\n .style('margin-bottom','12px')\n\n return input\n\n\n\n }\n\n update_slider(slide ,value){\n slide.attr('value', value);\n }\n\n //OLD PHYLO COPY PASTE todo clean\n // Below are the functions that handle actual exporting:\n // getSVGString ( svgNode ) and svgString2Image( svgString, width, height, format, callback )\n getSVGString( svgNode ) {\n svgNode.setAttribute('xlink', 'http://www.w3.org/1999/xlink');\n var cssStyleText = getCSSStyles( svgNode );\n appendCSS( cssStyleText, svgNode );\n\n var serializer = new XMLSerializer();\n var svgString = serializer.serializeToString(svgNode);\n svgString = svgString.replace(/(\\w+)?:?xlink=/g, 'xmlns:xlink='); // Fix root xlink without namespace\n svgString = svgString.replace(/NS\\d+:href/g, 'xlink:href'); // Safari NS namespace fix\n\n return svgString;\n\n function getCSSStyles( parentElement ) {\n var selectorTextArr = [];\n\n // Add Parent element Id and Classes to the list\n selectorTextArr.push( '#'+parentElement.id );\n for (var c = 0; c < parentElement.classList.length; c++)\n if ( !contains('.'+parentElement.classList[c], selectorTextArr) )\n selectorTextArr.push( '.'+parentElement.classList[c] );\n\n // Add Children element Ids and Classes to the list\n var nodes = parentElement.getElementsByTagName(\"*\");\n for (var i = 0; i < nodes.length; i++) {\n var id = nodes[i].id;\n if ( !contains('#'+id, selectorTextArr) )\n selectorTextArr.push( '#'+id );\n\n var classes = nodes[i].classList;\n for (var c = 0; c < classes.length; c++)\n if ( !contains('.'+classes[c], selectorTextArr) )\n selectorTextArr.push( '.'+classes[c] );\n }\n\n // Extract CSS Rules\n var extractedCSSText = \"\";\n for (var i = 0; i < document.styleSheets.length; i++) {\n var s = document.styleSheets[i];\n\n try {\n if(!s.cssRules) continue;\n } catch( e ) {\n if(e.name !== 'SecurityError') throw e; // for Firefox\n continue;\n }\n\n var cssRules = s.cssRules;\n for (var r = 0; r < cssRules.length; r++) {\n if ( contains( cssRules[r].selectorText, selectorTextArr ) )\n extractedCSSText += cssRules[r].cssText;\n }\n }\n\n\n return extractedCSSText;\n\n function contains(str,arr) {\n return arr.indexOf( str ) === -1 ? false : true;\n }\n\n }\n\n function appendCSS( cssText, element ) {\n var styleElement = document.createElement(\"style\");\n styleElement.setAttribute(\"type\",\"text/css\");\n styleElement.innerHTML = cssText;\n var refNode = element.hasChildNodes() ? element.children[0] : null;\n element.insertBefore( styleElement, refNode );\n }\n }\n\n svgString2Image( svgString, width, height, format, callback ) {\n var format = format ? format : 'png';\n\n var imgsrc = 'data:image/svg+xml;base64,'+ btoa( unescape( encodeURIComponent( svgString ) ) ); // Convert SVG string to dataurl\n\n var canvas = document.createElement(\"canvas\");\n var context = canvas.getContext(\"2d\");\n\n canvas.width = width;\n canvas.height = height;\n\n var image = new Image;\n image.onload = function() {\n\n context.clearRect ( 0, 0, width, height );\n context.fillStyle = \"#ffffff\";\n context.fillRect(0, 0, width, height);\n context.drawImage(image, 0, 0, width, height);\n\n canvas.toBlob( function(blob) {\n var filesize = Math.round( blob.length/1024 ) + ' KB';\n if ( callback ) callback( blob, filesize );\n });\n };\n image.src = imgsrc;\n }\n\n addLogo(svg) {\n // TODO load with ajax\n 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style=\"font-size:22.18883514px;font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;text-align:start;line-height:125%;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:start;fill:#000000;fill-opacity:1;stroke:none;font-family:Sawasdee;-inkscape-font-specification:Sawasdee Bold\" id=\"path4153\" /> <path d=\"m 84.532366,34.0049 c -2e-6,-0.247148 0.08612,-0.457951 0.258374,-0.63241 0.172247,-0.181725 0.380382,-0.272588 0.624405,-0.27259 0.244018,2e-6 0.452152,0.09087 0.624405,0.27259 0.179424,0.174459 0.269137,0.385262 0.269141,0.63241 -4e-6,0.239881 -0.08972,0.454318 -0.269141,0.643314 -0.17943,0.181727 -0.387564,0.27259 -0.624405,0.27259 -0.236846,0 -0.444981,-0.09087 -0.624405,-0.27259 -0.172252,-0.188996 -0.258376,-0.403433 -0.258374,-0.643314\" 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style=\"font-size:22.18883514px;font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;text-align:start;line-height:125%;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:start;fill:#000000;fill-opacity:1;stroke:none;font-family:Sawasdee;-inkscape-font-specification:Sawasdee\" id=\"path4157\" /> <path d=\"m 99.593447,23.526521 c 0.753583,1.1e-5 1.474873,0.149027 2.163883,0.447048 0.68899,0.298043 1.28468,0.701476 1.78709,1.210302 0.50238,0.508844 0.90072,1.115812 1.19499,1.820905 0.29424,0.705108 0.44137,1.442918 0.44139,2.213434 -2e-5,0.777797 -0.14715,1.519242 -0.44139,2.224339 -0.29427,0.705104 -0.69261,1.312071 -1.19499,1.820905 -0.50241,0.501568 -1.0981,0.905001 -1.78709,1.210301 -0.68901,0.298033 -1.4103,0.447049 -2.163883,0.447049 -1.543077,0 -2.860068,-0.556084 -3.950979,-1.668254 -1.090916,-1.112166 -1.636373,-2.456945 -1.636372,-4.03434 -10e-7,-1.032202 0.247608,-1.984451 0.742827,-2.856748 0.502393,-0.87955 1.180625,-1.570111 2.0347,-2.071688 0.861243,-0.508825 1.797849,-0.763242 2.809824,-0.763253 m -4.629212,5.691689 c -2e-6,1.301171 0.452153,2.416973 1.356467,3.347412 0.911483,0.923175 2.009573,1.38476 3.294277,1.384759 1.284681,10e-7 2.379191,-0.461584 3.283511,-1.384759 0.91147,-0.930439 1.36721,-2.046241 1.36722,-3.347412 -1e-5,-1.293889 -0.45575,-2.402423 -1.36722,-3.325603 -0.90432,-0.923164 -1.99883,-1.38475 -3.283511,-1.38476 -1.284704,10e-6 -2.382794,0.461596 -3.294277,1.38476 -0.904314,0.92318 -1.356469,2.031714 -1.356467,3.325603\" style=\"font-size:22.18883514px;font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;text-align:start;line-height:125%;letter-spacing:0px;word-spacing:0px;writing-mode:lr-tb;text-anchor:start;fill:#000000;fill-opacity:1;stroke:none;font-family:Sawasdee;-inkscape-font-specification:Sawasdee\" id=\"path4159\" /> </g> <g id=\"g4014\" transform=\"translate(12.84,20.592727)\"> <g transform=\"translate(0,-0.065)\" id=\"g3992\"> <polygon style=\"fill:#939598\" id=\"polygon461\" points=\"5.7,0.23 11.86,0.23 11.86,1.65 7.12,1.65 7.12,6.04 11.86,6.04 11.86,7.46 11.86,7.46 5.7,7.46 \" class=\"cls-2\" /> <polygon style=\"fill:#939598\" id=\"polygon463\" points=\"0,7.08 3.51,7.08 3.51,8.49 1.43,8.49 1.45,15.84 12.68,15.84 12.68,17.26 12.68,17.26 0.04,17.26 \" class=\"cls-2\" /> <polygon style=\"fill:#939598\" id=\"polygon465\" points=\"10.49,11.02 10.49,12.44 10.49,12.44 2.84,12.44 2.84,7.79 4.26,7.79 4.26,11.02 \" class=\"cls-2\" transform=\"translate(0,-0.15225398)\" /> <polygon style=\"fill:#bcbec0\" id=\"polygon467\" points=\"4.26,4.55 4.26,7.79 4.26,7.79 2.84,7.79 2.84,3.13 6.41,3.13 6.41,4.55 \" class=\"cls-3\" transform=\"matrix(1,0,0,0.85463687,0,0.4549866)\" /> <rect style=\"fill:#939598;fill-opacity:1\" id=\"rect3926-3\" width=\"1.4240631\" height=\"1.7319686\" x=\"2.8396611\" y=\"7.0799503\" /> <rect style=\"fill:#939598;fill-opacity:1\" id=\"rect3926-6\" width=\"1.3864813\" height=\"1.6934805\" x=\"5.7012329\" y=\"2.9206221\" /> </g> <g id=\"g4005\"> <g id=\"g3984\"> <polygon class=\"cls-2\" points=\"94.93,12.33 94.93,10.91 99.87,10.91 99.87,6.46 94.93,6.46 94.93,5.04 101.29,5.04 101.29,12.33 101.29,12.33 \" id=\"polygon453\" style=\"fill:#939598\" /> <polygon class=\"cls-2\" points=\"94.72,17.36 94.72,15.94 104.87,15.94 104.9,5.41 102.74,5.41 102.74,3.99 106.32,3.99 106.29,17.36 106.29,17.36 \" id=\"polygon455\" style=\"fill:#939598\" /> <polygon class=\"cls-2\" points=\"95.51,1.42 95.51,0 103.45,0 103.45,4.7 103.45,4.7 102.03,4.7 102.03,1.42 \" id=\"polygon457\" style=\"fill:#939598\" /> <polygon class=\"cls-3\" points=\"102.03,7.97 102.03,4.7 103.45,4.7 103.45,9.39 103.45,9.39 100.65,9.39 100.65,7.97 \" id=\"polygon459\" style=\"fill:#bcbec0\" /> <rect y=\"3.9876499\" x=\"102.02941\" height=\"1.4238259\" width=\"1.4579451\" id=\"rect3926\" style=\"fill:#939598;fill-opacity:1\" /> <rect y=\"7.884686\" x=\"99.887817\" height=\"1.6934805\" width=\"1.397205\" id=\"rect3926-7\" style=\"fill:#939598;fill-opacity:1\" /> </g> </g> </g> </g> </svg>';\n\n\n svg.append(\"g\").html(logo_xml);\n\n }\n\n add_empty_message(){\n\n\n this.container_d3.selectAll(\".empty_message\").remove()\n\n\n /*if (phylo.phylo_embedded){\n\n if (phylo.bound_container[0]==this.container_object){\n tooltip_object[0].show()\n tooltip_object[3].show()\n }\n\n }\n\n */\n\n\n\n this.viewer.svg_d3.node().append('g')\n .attr(\"class\", 'empty_message')\n .attr('width',this.viewer.width )\n .attr(\"transform\", \"translate(\"+ (this.viewer.width/2)+\",\" + (this.viewer.height/2) + \")\")\n .append(\"text\")\n .attr(\"fill\", \"#333\")\n .attr('text-anchor', 'middle')\n .style('font-size', '1.2em')\n .html('No tree here! You can <a href=\"#\" id=\"add_tree_link' + this.container_object.uid +'\">add a tree</a> or use the examples below.')\n\n document.querySelector('#add_tree_link'+ this.container_object.uid).addEventListener('click', event => {\n $('#exampleModal' + this.container_object.uid).modal('show')\n });\n\n\n\n this.viewer.svg_d3.node().append('text')\n .attr(\"class\", 'empty_message')\n .attr(\"transform\", \"translate(\"+ (this.viewer.width/2)+\",\" + (this.viewer.height/2 + 24) + \")\")\n .attr('text-anchor', 'middle')\n .attr(\"fill\", \"#bbb\")\n .html(\"Ready to use examples: <a id='ex1\"+ this.container_object.uid +\"' style='cursor:pointer;text-decoration: underline'> Tree collection #1</a> - <a style='cursor:pointer;text-decoration: underline' id='ex2\"+ this.container_object.uid +\"'>Tree collection #2</a> \")\n\n\n\n document.querySelector('#ex1'+ this.container_object.uid).addEventListener('click', event => {\n this.container_object.add_tree(this.examples[\"LRF1\"],{'data_type': 'nhx'})\n this.container_object.add_tree(this.examples[\"r2t\"])\n this.container_object.add_tree(this.examples[\"unrooted1\"])\n this.container_object.add_tree(this.examples[\"small1\"])\n\n\n this.api.start()\n });\n\n document.querySelector('#ex2'+ this.container_object.uid).addEventListener('click', event => {\n\n this.container_object.add_tree(this.examples[\"LRF2\"],{'data_type': 'nhx'})\n this.container_object.add_tree(this.examples[\"rokas\"])\n this.container_object.add_tree(this.examples[\"nhx\"],{'data_type': 'nhx'})\n this.container_object.add_tree(this.examples[\"unrooted2\"])\n this.container_object.add_tree(this.examples[\"small2\"])\n this.container_object.add_tree(this.examples[\"stack\"],{'data_type': 'json', 'use_branch_lenght': false, 'show_histogram':true, 'collapse_level': 2})\n this.api.start()\n });\n\n }\n\n\n}\n\n//# sourceURL=webpack://PhyloIO/./src/interface.js?");
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  /***/ }),
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