phenoml 9.1.0 → 10.0.0

package/dist/cjs/api/resources/tools/resources/mcpServer/exports.js

@@ -0,0 +1,22 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.McpServerClient = void 0;
+var Client_js_1 = require("./client/Client.js");
+Object.defineProperty(exports, "McpServerClient", { enumerable: true, get: function () { return Client_js_1.McpServerClient; } });
+__exportStar(require("./client/index.js"), exports);
+__exportStar(require("./resources/index.js"), exports);

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/Client.d.ts

@@ -1,20 +1,20 @@
 import type { BaseClientOptions, BaseRequestOptions } from "../../../../../../../../BaseClient.js";
+import { type NormalizedClientOptionsWithAuth } from "../../../../../../../../BaseClient.js";
 import * as core from "../../../../../../../../core/index.js";
 import * as phenoml from "../../../../../../../index.js";
-export declare namespace Tools {
-    interface Options extends BaseClientOptions {
-    }
+export declare namespace ToolsClient {
+    type Options = BaseClientOptions;
     interface RequestOptions extends BaseRequestOptions {
     }
 }
-export declare class Tools {
-    protected readonly _options: Tools.Options;
-    constructor(_options: Tools.Options);
+export declare class ToolsClient {
+    protected readonly _options: NormalizedClientOptionsWithAuth<ToolsClient.Options>;
+    constructor(options?: ToolsClient.Options);
     /**
      * Lists all MCP server tools for a specific MCP server
      *
      * @param {string} mcp_server_id - ID of the MCP server to list tools for
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.UnauthorizedError}
      * @throws {@link phenoml.tools.ForbiddenError}
@@ -23,13 +23,13 @@ export declare class Tools {
      * @example
      *     await client.tools.mcpServer.tools.list("mcp_server_id")
      */
-    list(mcp_server_id: string, requestOptions?: Tools.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolResponse>;
+    list(mcp_server_id: string, requestOptions?: ToolsClient.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolResponse>;
     private __list;
     /**
      * Gets a MCP server tool by ID
      *
      * @param {string} mcp_server_tool_id - ID of the MCP server tool to retrieve
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.UnauthorizedError}
      * @throws {@link phenoml.tools.ForbiddenError}
@@ -38,13 +38,13 @@ export declare class Tools {
      * @example
      *     await client.tools.mcpServer.tools.get("mcp_server_tool_id")
      */
-    get(mcp_server_tool_id: string, requestOptions?: Tools.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolResponse>;
+    get(mcp_server_tool_id: string, requestOptions?: ToolsClient.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolResponse>;
     private __get;
     /**
      * Deletes a MCP server tool by ID
      *
      * @param {string} mcp_server_tool_id - ID of the MCP server tool to delete
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.UnauthorizedError}
      * @throws {@link phenoml.tools.ForbiddenError}
@@ -53,14 +53,14 @@ export declare class Tools {
      * @example
      *     await client.tools.mcpServer.tools.delete("mcp_server_tool_id")
      */
-    delete(mcp_server_tool_id: string, requestOptions?: Tools.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolResponse>;
+    delete(mcp_server_tool_id: string, requestOptions?: ToolsClient.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolResponse>;
     private __delete;
     /**
      * Calls a MCP server tool
      *
      * @param {string} mcp_server_tool_id - ID of the MCP server tool to call
      * @param {phenoml.tools.mcpServer.McpServerToolCallRequest} request
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.BadRequestError}
      * @throws {@link phenoml.tools.UnauthorizedError}
@@ -74,7 +74,6 @@ export declare class Tools {
      *         }
      *     })
      */
-    call(mcp_server_tool_id: string, request: phenoml.tools.mcpServer.McpServerToolCallRequest, requestOptions?: Tools.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolCallResponse>;
+    call(mcp_server_tool_id: string, request: phenoml.tools.mcpServer.McpServerToolCallRequest, requestOptions?: ToolsClient.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolCallResponse>;
     private __call;
-    protected _getAuthorizationHeader(): Promise<string>;
 }

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/Client.js

@@ -43,21 +43,23 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
     });
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Tools = void 0;
+exports.ToolsClient = void 0;
+const BaseClient_js_1 = require("../../../../../../../../BaseClient.js");
 const headers_js_1 = require("../../../../../../../../core/headers.js");
 const core = __importStar(require("../../../../../../../../core/index.js"));
 const environments = __importStar(require("../../../../../../../../environments.js"));
+const handleNonStatusCodeError_js_1 = require("../../../../../../../../errors/handleNonStatusCodeError.js");
 const errors = __importStar(require("../../../../../../../../errors/index.js"));
 const phenoml = __importStar(require("../../../../../../../index.js"));
-class Tools {
-    constructor(_options) {
-        this._options = _options;
+class ToolsClient {
+    constructor(options = {}) {
+        this._options = (0, BaseClient_js_1.normalizeClientOptionsWithAuth)(options);
     }
     /**
      * Lists all MCP server tools for a specific MCP server
      *
      * @param {string} mcp_server_id - ID of the MCP server to list tools for
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.UnauthorizedError}
      * @throws {@link phenoml.tools.ForbiddenError}
@@ -72,7 +74,8 @@ class Tools {
     __list(mcp_server_id, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
-            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _authRequest = yield this._options.authProvider.getAuthRequest();
+            const _headers = (0, headers_js_1.mergeHeaders)(_authRequest.headers, (_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcp_server_id)}/list`),
                 method: "GET",
@@ -103,28 +106,14 @@ class Tools {
                         });
                 }
             }
-            switch (_response.error.reason) {
-                case "non-json":
-                    throw new errors.phenomlError({
-                        statusCode: _response.error.statusCode,
-                        body: _response.error.rawBody,
-                        rawResponse: _response.rawResponse,
-                    });
-                case "timeout":
-                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling GET /tools/mcp-server/{mcp_server_id}/list.");
-                case "unknown":
-                    throw new errors.phenomlError({
-                        message: _response.error.errorMessage,
-                        rawResponse: _response.rawResponse,
-                    });
-            }
+            return (0, handleNonStatusCodeError_js_1.handleNonStatusCodeError)(_response.error, _response.rawResponse, "GET", "/tools/mcp-server/{mcp_server_id}/list");
         });
     }
     /**
      * Gets a MCP server tool by ID
      *
      * @param {string} mcp_server_tool_id - ID of the MCP server tool to retrieve
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.UnauthorizedError}
      * @throws {@link phenoml.tools.ForbiddenError}
@@ -139,7 +128,8 @@ class Tools {
     __get(mcp_server_tool_id, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
-            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _authRequest = yield this._options.authProvider.getAuthRequest();
+            const _headers = (0, headers_js_1.mergeHeaders)(_authRequest.headers, (_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcp_server_tool_id)}`),
                 method: "GET",
@@ -170,28 +160,14 @@ class Tools {
                         });
                 }
             }
-            switch (_response.error.reason) {
-                case "non-json":
-                    throw new errors.phenomlError({
-                        statusCode: _response.error.statusCode,
-                        body: _response.error.rawBody,
-                        rawResponse: _response.rawResponse,
-                    });
-                case "timeout":
-                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling GET /tools/mcp-server/tool/{mcp_server_tool_id}.");
-                case "unknown":
-                    throw new errors.phenomlError({
-                        message: _response.error.errorMessage,
-                        rawResponse: _response.rawResponse,
-                    });
-            }
+            return (0, handleNonStatusCodeError_js_1.handleNonStatusCodeError)(_response.error, _response.rawResponse, "GET", "/tools/mcp-server/tool/{mcp_server_tool_id}");
         });
     }
     /**
      * Deletes a MCP server tool by ID
      *
      * @param {string} mcp_server_tool_id - ID of the MCP server tool to delete
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.UnauthorizedError}
      * @throws {@link phenoml.tools.ForbiddenError}
@@ -206,7 +182,8 @@ class Tools {
     __delete(mcp_server_tool_id, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
-            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _authRequest = yield this._options.authProvider.getAuthRequest();
+            const _headers = (0, headers_js_1.mergeHeaders)(_authRequest.headers, (_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcp_server_tool_id)}`),
                 method: "DELETE",
@@ -237,21 +214,7 @@ class Tools {
                         });
                 }
             }
-            switch (_response.error.reason) {
-                case "non-json":
-                    throw new errors.phenomlError({
-                        statusCode: _response.error.statusCode,
-                        body: _response.error.rawBody,
-                        rawResponse: _response.rawResponse,
-                    });
-                case "timeout":
-                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling DELETE /tools/mcp-server/tool/{mcp_server_tool_id}.");
-                case "unknown":
-                    throw new errors.phenomlError({
-                        message: _response.error.errorMessage,
-                        rawResponse: _response.rawResponse,
-                    });
-            }
+            return (0, handleNonStatusCodeError_js_1.handleNonStatusCodeError)(_response.error, _response.rawResponse, "DELETE", "/tools/mcp-server/tool/{mcp_server_tool_id}");
         });
     }
     /**
@@ -259,7 +222,7 @@ class Tools {
      *
      * @param {string} mcp_server_tool_id - ID of the MCP server tool to call
      * @param {phenoml.tools.mcpServer.McpServerToolCallRequest} request
-     * @param {Tools.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {ToolsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.tools.BadRequestError}
      * @throws {@link phenoml.tools.UnauthorizedError}
@@ -279,7 +242,8 @@ class Tools {
     __call(mcp_server_tool_id, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k;
-            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _authRequest = yield this._options.authProvider.getAuthRequest();
+            const _headers = (0, headers_js_1.mergeHeaders)(_authRequest.headers, (_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcp_server_tool_id)}/call`),
                 method: "POST",
@@ -318,27 +282,8 @@ class Tools {
                         });
                 }
             }
-            switch (_response.error.reason) {
-                case "non-json":
-                    throw new errors.phenomlError({
-                        statusCode: _response.error.statusCode,
-                        body: _response.error.rawBody,
-                        rawResponse: _response.rawResponse,
-                    });
-                case "timeout":
-                    throw new errors.phenomlTimeoutError("Timeout exceeded when calling POST /tools/mcp-server/tool/{mcp_server_tool_id}/call.");
-                case "unknown":
-                    throw new errors.phenomlError({
-                        message: _response.error.errorMessage,
-                        rawResponse: _response.rawResponse,
-                    });
-            }
-        });
-    }
-    _getAuthorizationHeader() {
-        return __awaiter(this, void 0, void 0, function* () {
-            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
+            return (0, handleNonStatusCodeError_js_1.handleNonStatusCodeError)(_response.error, _response.rawResponse, "POST", "/tools/mcp-server/tool/{mcp_server_tool_id}/call");
         });
     }
 }
-exports.Tools = Tools;
+exports.ToolsClient = ToolsClient;

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/exports.d.ts

@@ -0,0 +1,2 @@
+export { ToolsClient } from "./client/Client.js";
+export * from "./client/index.js";

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/exports.js

@@ -0,0 +1,21 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ToolsClient = void 0;
+var Client_js_1 = require("./client/Client.js");
+Object.defineProperty(exports, "ToolsClient", { enumerable: true, get: function () { return Client_js_1.ToolsClient; } });
+__exportStar(require("./client/index.js"), exports);

package/dist/cjs/api/resources/tools/types/CohortResponse.d.ts

@@ -1,13 +1,13 @@
 import type * as phenoml from "../../../index.js";
 export interface CohortResponse {
     /** Whether the cohort analysis was successful */
-    success?: boolean;
+    success?: boolean | undefined;
     /** Status message with details about the analysis */
-    message?: string;
+    message?: string | undefined;
     /** Array of patient IDs that match the cohort criteria */
-    patientIds?: string[];
+    patientIds?: string[] | undefined;
     /** Total number of patients in the cohort */
-    patientCount?: number;
+    patientCount?: number | undefined;
     /** Individual search concepts that were identified and executed */
-    queries?: phenoml.tools.SearchConcept[];
+    queries?: phenoml.tools.SearchConcept[] | undefined;
 }

package/dist/cjs/api/resources/tools/types/Lang2FhirAndCreateMultiResponse.d.ts

@@ -1,31 +1,31 @@
 export interface Lang2FhirAndCreateMultiResponse {
     /** Whether the resources were created successfully */
-    success?: boolean;
+    success?: boolean | undefined;
     /** Status message */
-    message?: string;
+    message?: string | undefined;
     /** FHIR transaction-response Bundle from the server with resolved resource IDs */
-    response_bundle?: Lang2FhirAndCreateMultiResponse.ResponseBundle;
+    response_bundle?: Lang2FhirAndCreateMultiResponse.ResponseBundle | undefined;
     /** Metadata about created resources (temp IDs, types, descriptions) */
-    resource_info?: Lang2FhirAndCreateMultiResponse.ResourceInfo.Item[];
+    resource_info?: Lang2FhirAndCreateMultiResponse.ResourceInfo.Item[] | undefined;
 }
 export declare namespace Lang2FhirAndCreateMultiResponse {
     /**
      * FHIR transaction-response Bundle from the server with resolved resource IDs
      */
     interface ResponseBundle {
-        resourceType?: string;
-        type?: string;
-        entry?: Record<string, unknown>[];
+        resourceType?: string | undefined;
+        type?: string | undefined;
+        entry?: Record<string, unknown>[] | undefined;
     }
     type ResourceInfo = ResourceInfo.Item[];
     namespace ResourceInfo {
         interface Item {
             /** Original temporary UUID */
-            tempId?: string;
+            tempId?: string | undefined;
             /** FHIR resource type */
-            resourceType?: string;
+            resourceType?: string | undefined;
             /** Text excerpt this resource was extracted from */
-            description?: string;
+            description?: string | undefined;
         }
     }
 }

package/dist/cjs/api/resources/tools/types/Lang2FhirAndCreateResponse.d.ts

@@ -1,9 +1,9 @@
 export interface Lang2FhirAndCreateResponse {
     /** The created FHIR resource */
-    fhir_resource?: Record<string, unknown>;
+    fhir_resource?: Record<string, unknown> | undefined;
     /** ID of the resource in the FHIR server (if successfully stored) */
-    fhir_id?: string;
-    success?: boolean;
+    fhir_id?: string | undefined;
+    success?: boolean | undefined;
     /** Status message */
-    message?: string;
+    message?: string | undefined;
 }

package/dist/cjs/api/resources/tools/types/Lang2FhirAndSearchResponse.d.ts

@@ -1,11 +1,11 @@
 export interface Lang2FhirAndSearchResponse {
     /** The FHIR resource type identified for the search */
-    resource_type?: string;
+    resource_type?: string | undefined;
     /** FHIR search parameters in standard format */
-    search_params?: string;
+    search_params?: string | undefined;
     /** Array of FHIR resources returned from the search */
-    fhir_results?: Record<string, unknown>[];
-    success?: boolean;
+    fhir_results?: Record<string, unknown>[] | undefined;
+    success?: boolean | undefined;
     /** Status message */
-    message?: string;
+    message?: string | undefined;
 }

package/dist/cjs/api/resources/tools/types/McpServerResponse.d.ts

@@ -1,10 +1,10 @@
 export interface McpServerResponse {
     /** Whether the MCP server was created successfully */
-    success?: boolean;
+    success?: boolean | undefined;
     /** Status message */
-    message?: string;
+    message?: string | undefined;
     /** MCP server data */
-    data?: McpServerResponse.Data;
+    data?: McpServerResponse.Data | undefined;
 }
 export declare namespace McpServerResponse {
     /**
@@ -12,12 +12,12 @@ export declare namespace McpServerResponse {
      */
     interface Data {
         /** ID of the MCP server */
-        id?: string;
+        id?: string | undefined;
         /** Name of the MCP server */
-        name?: string;
+        name?: string | undefined;
         /** Description of the MCP server */
-        description?: string;
+        description?: string | undefined;
         /** URL of the MCP server */
-        mcp_server_url?: string;
+        mcp_server_url?: string | undefined;
     }
 }

package/dist/cjs/api/resources/tools/types/McpServerToolCallResponse.d.ts

@@ -1,10 +1,10 @@
 export interface McpServerToolCallResponse {
     /** Whether the MCP server tool was called successfully */
-    success?: boolean;
+    success?: boolean | undefined;
     /** Status message */
-    message?: string;
+    message?: string | undefined;
     /** Result of the MCP server tool call */
-    result?: Record<string, unknown>;
+    result?: Record<string, unknown> | undefined;
     /** Error message if the call failed */
-    error?: string;
+    error?: string | undefined;
 }

package/dist/cjs/api/resources/tools/types/McpServerToolResponse.d.ts

@@ -1,10 +1,10 @@
 export interface McpServerToolResponse {
     /** Whether the MCP server tool was created successfully */
-    success?: boolean;
+    success?: boolean | undefined;
     /** Status message */
-    message?: string;
+    message?: string | undefined;
     /** MCP server tool data */
-    data?: McpServerToolResponse.Data;
+    data?: McpServerToolResponse.Data | undefined;
 }
 export declare namespace McpServerToolResponse {
     /**
@@ -12,16 +12,16 @@ export declare namespace McpServerToolResponse {
      */
     interface Data {
         /** ID of the MCP server tool */
-        id?: string;
+        id?: string | undefined;
         /** Name of the MCP server tool */
-        name?: string;
+        name?: string | undefined;
         /** Description of the MCP server tool */
-        description?: string;
+        description?: string | undefined;
         /** Input schema of the MCP server tool */
-        input_schema?: Record<string, unknown>;
+        input_schema?: Record<string, unknown> | undefined;
         /** ID of the MCP server that the tool belongs to */
-        mcp_server_id?: string;
+        mcp_server_id?: string | undefined;
         /** URL of the MCP server */
-        mcp_server_url?: string;
+        mcp_server_url?: string | undefined;
     }
 }

package/dist/cjs/api/resources/tools/types/SearchConcept.d.ts

@@ -3,11 +3,11 @@
  */
 export interface SearchConcept {
     /** The FHIR resource type identified for this concept */
-    resource_type?: string;
+    resource_type?: string | undefined;
     /** FHIR search parameters for this concept */
-    search_params?: string;
+    search_params?: string | undefined;
     /** Description of what this search represents */
-    concept?: string;
+    concept?: string | undefined;
     /** Whether this is an exclusion criteria */
-    exclude?: boolean;
+    exclude?: boolean | undefined;
 }

package/dist/cjs/api/resources/workflows/client/Client.d.ts

@@ -1,20 +1,20 @@
 import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.js";
+import { type NormalizedClientOptionsWithAuth } from "../../../../BaseClient.js";
 import * as core from "../../../../core/index.js";
 import * as phenoml from "../../../index.js";
-export declare namespace Workflows {
-    interface Options extends BaseClientOptions {
-    }
+export declare namespace WorkflowsClient {
+    type Options = BaseClientOptions;
     interface RequestOptions extends BaseRequestOptions {
     }
 }
-export declare class Workflows {
-    protected readonly _options: Workflows.Options;
-    constructor(_options: Workflows.Options);
+export declare class WorkflowsClient {
+    protected readonly _options: NormalizedClientOptionsWithAuth<WorkflowsClient.Options>;
+    constructor(options?: WorkflowsClient.Options);
     /**
      * Retrieves all workflow definitions for the authenticated user
      *
      * @param {phenoml.workflows.WorkflowsListRequest} request
-     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {WorkflowsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.workflows.UnauthorizedError}
      * @throws {@link phenoml.workflows.ForbiddenError}
@@ -25,13 +25,13 @@ export declare class Workflows {
      *         verbose: true
      *     })
      */
-    list(request?: phenoml.workflows.WorkflowsListRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.ListWorkflowsResponse>;
+    list(request?: phenoml.workflows.WorkflowsListRequest, requestOptions?: WorkflowsClient.RequestOptions): core.HttpResponsePromise<phenoml.workflows.ListWorkflowsResponse>;
     private __list;
     /**
      * Creates a new workflow definition with graph generation from workflow instructions
      *
      * @param {phenoml.workflows.CreateWorkflowRequest} request
-     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {WorkflowsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.workflows.BadRequestError}
      * @throws {@link phenoml.workflows.UnauthorizedError}
@@ -51,14 +51,14 @@ export declare class Workflows {
      *         fhir_provider_id: "550e8400-e29b-41d4-a716-446655440000"
      *     })
      */
-    create(request: phenoml.workflows.CreateWorkflowRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.CreateWorkflowResponse>;
+    create(request: phenoml.workflows.CreateWorkflowRequest, requestOptions?: WorkflowsClient.RequestOptions): core.HttpResponsePromise<phenoml.workflows.CreateWorkflowResponse>;
     private __create;
     /**
      * Retrieves a workflow definition by its ID
      *
      * @param {string} id - ID of the workflow to retrieve
      * @param {phenoml.workflows.WorkflowsGetRequest} request
-     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {WorkflowsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.workflows.UnauthorizedError}
      * @throws {@link phenoml.workflows.ForbiddenError}
@@ -70,14 +70,14 @@ export declare class Workflows {
      *         verbose: true
      *     })
      */
-    get(id: string, request?: phenoml.workflows.WorkflowsGetRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsGetResponse>;
+    get(id: string, request?: phenoml.workflows.WorkflowsGetRequest, requestOptions?: WorkflowsClient.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsGetResponse>;
     private __get;
     /**
      * Updates an existing workflow definition
      *
      * @param {string} id - ID of the workflow to update
      * @param {phenoml.workflows.UpdateWorkflowRequest} request
-     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {WorkflowsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.workflows.BadRequestError}
      * @throws {@link phenoml.workflows.UnauthorizedError}
@@ -98,13 +98,13 @@ export declare class Workflows {
      *         fhir_provider_id: "550e8400-e29b-41d4-a716-446655440000"
      *     })
      */
-    update(id: string, request: phenoml.workflows.UpdateWorkflowRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsUpdateResponse>;
+    update(id: string, request: phenoml.workflows.UpdateWorkflowRequest, requestOptions?: WorkflowsClient.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsUpdateResponse>;
     private __update;
     /**
      * Deletes a workflow definition by its ID
      *
      * @param {string} id - ID of the workflow to delete
-     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {WorkflowsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.workflows.UnauthorizedError}
      * @throws {@link phenoml.workflows.ForbiddenError}
@@ -114,14 +114,14 @@ export declare class Workflows {
      * @example
      *     await client.workflows.delete("id")
      */
-    delete(id: string, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsDeleteResponse>;
+    delete(id: string, requestOptions?: WorkflowsClient.RequestOptions): core.HttpResponsePromise<phenoml.workflows.WorkflowsDeleteResponse>;
     private __delete;
     /**
      * Executes a workflow with provided input data and returns results
      *
      * @param {string} id - ID of the workflow to execute
      * @param {phenoml.workflows.ExecuteWorkflowRequest} request
-     * @param {Workflows.RequestOptions} requestOptions - Request-specific configuration.
+     * @param {WorkflowsClient.RequestOptions} requestOptions - Request-specific configuration.
      *
      * @throws {@link phenoml.workflows.BadRequestError}
      * @throws {@link phenoml.workflows.UnauthorizedError}
@@ -139,7 +139,6 @@ export declare class Workflows {
      *         }
      *     })
      */
-    execute(id: string, request: phenoml.workflows.ExecuteWorkflowRequest, requestOptions?: Workflows.RequestOptions): core.HttpResponsePromise<phenoml.workflows.ExecuteWorkflowResponse>;
+    execute(id: string, request: phenoml.workflows.ExecuteWorkflowRequest, requestOptions?: WorkflowsClient.RequestOptions): core.HttpResponsePromise<phenoml.workflows.ExecuteWorkflowResponse>;
     private __execute;
-    protected _getAuthorizationHeader(): Promise<string>;
 }