phenoml 17.0.1 → 17.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/BaseClient.js +2 -2
- package/dist/cjs/Client.d.ts +3 -0
- package/dist/cjs/Client.js +15 -10
- package/dist/cjs/api/resources/fhir2Omop/client/Client.d.ts +123 -0
- package/dist/cjs/api/resources/fhir2Omop/client/Client.js +211 -0
- package/dist/cjs/api/resources/fhir2Omop/client/index.d.ts +1 -0
- package/dist/cjs/api/resources/fhir2Omop/client/index.js +17 -0
- package/dist/cjs/api/resources/fhir2Omop/client/requests/CreateOmopRequest.d.ts +76 -0
- package/dist/cjs/api/resources/fhir2Omop/client/requests/CreateOmopRequest.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/client/requests/index.d.ts +1 -0
- package/dist/cjs/api/resources/fhir2Omop/client/requests/index.js +2 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/BadRequestError.d.ts +5 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/BadRequestError.js +54 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/InternalServerError.d.ts +5 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/InternalServerError.js +54 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.d.ts +5 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.js +54 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/index.d.ts +3 -0
- package/dist/cjs/api/resources/fhir2Omop/errors/index.js +19 -0
- package/dist/cjs/api/resources/fhir2Omop/exports.d.ts +2 -0
- package/dist/cjs/api/resources/fhir2Omop/exports.js +21 -0
- package/dist/cjs/api/resources/fhir2Omop/index.d.ts +3 -0
- package/dist/cjs/api/resources/fhir2Omop/index.js +19 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.ts +12 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/CreateOmopResponse.d.ts +17 -0
- package/dist/cjs/api/resources/fhir2Omop/types/CreateOmopResponse.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/DroppedResource.d.ts +5 -0
- package/dist/cjs/api/resources/fhir2Omop/types/DroppedResource.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.d.ts +13 -0
- package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/MappingReportEntry.d.ts +32 -0
- package/dist/cjs/api/resources/fhir2Omop/types/MappingReportEntry.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.d.ts +17 -0
- package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.d.ts +16 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.d.ts +13 -0
- package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.d.ts +14 -0
- package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.ts +10 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ScanSummary.d.ts +41 -0
- package/dist/cjs/api/resources/fhir2Omop/types/ScanSummary.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.ts +11 -0
- package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.js +3 -0
- package/dist/cjs/api/resources/fhir2Omop/types/index.d.ts +12 -0
- package/dist/cjs/api/resources/fhir2Omop/types/index.js +28 -0
- package/dist/cjs/api/resources/index.d.ts +1 -0
- package/dist/cjs/api/resources/index.js +2 -1
- package/dist/cjs/version.d.ts +1 -1
- package/dist/cjs/version.js +1 -1
- package/dist/esm/BaseClient.mjs +2 -2
- package/dist/esm/Client.d.mts +3 -0
- package/dist/esm/Client.mjs +5 -0
- package/dist/esm/api/resources/fhir2Omop/client/Client.d.mts +123 -0
- package/dist/esm/api/resources/fhir2Omop/client/Client.mjs +174 -0
- package/dist/esm/api/resources/fhir2Omop/client/index.d.mts +1 -0
- package/dist/esm/api/resources/fhir2Omop/client/index.mjs +1 -0
- package/dist/esm/api/resources/fhir2Omop/client/requests/CreateOmopRequest.d.mts +76 -0
- package/dist/esm/api/resources/fhir2Omop/client/requests/CreateOmopRequest.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/client/requests/index.d.mts +1 -0
- package/dist/esm/api/resources/fhir2Omop/client/requests/index.mjs +1 -0
- package/dist/esm/api/resources/fhir2Omop/errors/BadRequestError.d.mts +5 -0
- package/dist/esm/api/resources/fhir2Omop/errors/BadRequestError.mjs +17 -0
- package/dist/esm/api/resources/fhir2Omop/errors/InternalServerError.d.mts +5 -0
- package/dist/esm/api/resources/fhir2Omop/errors/InternalServerError.mjs +17 -0
- package/dist/esm/api/resources/fhir2Omop/errors/UnauthorizedError.d.mts +5 -0
- package/dist/esm/api/resources/fhir2Omop/errors/UnauthorizedError.mjs +17 -0
- package/dist/esm/api/resources/fhir2Omop/errors/index.d.mts +3 -0
- package/dist/esm/api/resources/fhir2Omop/errors/index.mjs +3 -0
- package/dist/esm/api/resources/fhir2Omop/exports.d.mts +2 -0
- package/dist/esm/api/resources/fhir2Omop/exports.mjs +3 -0
- package/dist/esm/api/resources/fhir2Omop/index.d.mts +3 -0
- package/dist/esm/api/resources/fhir2Omop/index.mjs +3 -0
- package/dist/esm/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.mts +12 -0
- package/dist/esm/api/resources/fhir2Omop/types/ConditionOccurrenceRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/CreateOmopResponse.d.mts +17 -0
- package/dist/esm/api/resources/fhir2Omop/types/CreateOmopResponse.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/DroppedResource.d.mts +5 -0
- package/dist/esm/api/resources/fhir2Omop/types/DroppedResource.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/DrugExposureRow.d.mts +13 -0
- package/dist/esm/api/resources/fhir2Omop/types/DrugExposureRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/MappingReportEntry.d.mts +32 -0
- package/dist/esm/api/resources/fhir2Omop/types/MappingReportEntry.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/MeasurementRow.d.mts +17 -0
- package/dist/esm/api/resources/fhir2Omop/types/MeasurementRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/ObservationRow.d.mts +16 -0
- package/dist/esm/api/resources/fhir2Omop/types/ObservationRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/OmopTables.d.mts +13 -0
- package/dist/esm/api/resources/fhir2Omop/types/OmopTables.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/PersonRow.d.mts +14 -0
- package/dist/esm/api/resources/fhir2Omop/types/PersonRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.mts +10 -0
- package/dist/esm/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/ScanSummary.d.mts +41 -0
- package/dist/esm/api/resources/fhir2Omop/types/ScanSummary.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.mts +11 -0
- package/dist/esm/api/resources/fhir2Omop/types/VisitOccurrenceRow.mjs +2 -0
- package/dist/esm/api/resources/fhir2Omop/types/index.d.mts +12 -0
- package/dist/esm/api/resources/fhir2Omop/types/index.mjs +12 -0
- package/dist/esm/api/resources/index.d.mts +1 -0
- package/dist/esm/api/resources/index.mjs +1 -0
- package/dist/esm/version.d.mts +1 -1
- package/dist/esm/version.mjs +1 -1
- package/openapi/openapi.json +844 -1
- package/package.json +15 -4
- package/reference.md +159 -0
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import type * as phenoml from "../../../index.mjs";
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/**
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* OMOP CDM v5.4 rows grouped by destination table.
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*/
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export interface OmopTables {
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person?: phenoml.fhir2Omop.PersonRow[] | undefined;
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visit_occurrence?: phenoml.fhir2Omop.VisitOccurrenceRow[] | undefined;
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condition_occurrence?: phenoml.fhir2Omop.ConditionOccurrenceRow[] | undefined;
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drug_exposure?: phenoml.fhir2Omop.DrugExposureRow[] | undefined;
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procedure_occurrence?: phenoml.fhir2Omop.ProcedureOccurrenceRow[] | undefined;
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measurement?: phenoml.fhir2Omop.MeasurementRow[] | undefined;
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observation?: phenoml.fhir2Omop.ObservationRow[] | undefined;
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}
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export interface PersonRow {
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person_id?: number | undefined;
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gender_concept_id?: number | undefined;
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year_of_birth?: number | undefined;
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month_of_birth?: number | undefined;
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day_of_birth?: number | undefined;
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birth_datetime?: string | undefined;
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race_concept_id?: number | undefined;
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ethnicity_concept_id?: number | undefined;
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person_source_value?: string | undefined;
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gender_source_value?: string | undefined;
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race_source_value?: string | undefined;
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ethnicity_source_value?: string | undefined;
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}
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export interface ProcedureOccurrenceRow {
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procedure_occurrence_id?: number | undefined;
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person_id?: number | undefined;
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procedure_concept_id?: number | undefined;
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procedure_date?: string | undefined;
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procedure_datetime?: string | undefined;
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procedure_type_concept_id?: number | undefined;
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procedure_source_value?: string | undefined;
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procedure_source_concept_id?: number | undefined;
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}
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import type * as phenoml from "../../../index.mjs";
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/**
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* White Rabbit-style aggregate profile of the mapping request.
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*/
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export interface ScanSummary {
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total_resources?: number | undefined;
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resource_counts?: Record<string, number> | undefined;
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tables_populated?: Record<string, number> | undefined;
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coding_systems?: Record<string, number> | undefined;
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codes_already_standard?: number | undefined;
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codes_normalized?: number | undefined;
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codes_unmapped?: number | undefined;
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off_vocab_rate?: number | undefined;
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dropped_resources?: phenoml.fhir2Omop.DroppedResource[] | undefined;
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/**
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* OMOP vocabulary release the resolver mapped against (e.g. "v20240229").
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* Resolved mode only; empty when no coded concept reached the service.
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*/
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resolved_vocab_version?: string | undefined;
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/**
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* Set when concept resolution was degraded — the resolver was unavailable
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* for one or more codings, whose `concept_id`s fell back to the structural
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* (construe) tier. Empty when resolution was clean.
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*/
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concept_resolver_note?: string | undefined;
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/**
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* Count of `concept_id`s chosen via the lower-confidence UMLS-CUI bridge
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* (no direct OMOP crosswalk existed). Resolved mode only.
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*/
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concepts_bridged?: number | undefined;
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/**
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* Count of codings whose candidate list the resolver capped, so the best
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* concept may not have been among those returned.
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*/
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concept_candidates_truncated?: number | undefined;
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/**
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* Count of codings resolved via the construe ML extractor — the text-only
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* or availability fallback path. A non-zero value bills the construe tier.
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*/
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construe_resolutions?: number | undefined;
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}
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export interface VisitOccurrenceRow {
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visit_occurrence_id?: number | undefined;
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person_id?: number | undefined;
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visit_concept_id?: number | undefined;
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visit_start_date?: string | undefined;
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visit_start_datetime?: string | undefined;
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visit_end_date?: string | undefined;
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visit_end_datetime?: string | undefined;
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visit_type_concept_id?: number | undefined;
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visit_source_value?: string | undefined;
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}
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export * from "./ConditionOccurrenceRow.mjs";
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export * from "./CreateOmopResponse.mjs";
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export * from "./DroppedResource.mjs";
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export * from "./DrugExposureRow.mjs";
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export * from "./MappingReportEntry.mjs";
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export * from "./MeasurementRow.mjs";
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export * from "./ObservationRow.mjs";
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export * from "./OmopTables.mjs";
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export * from "./PersonRow.mjs";
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export * from "./ProcedureOccurrenceRow.mjs";
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export * from "./ScanSummary.mjs";
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export * from "./VisitOccurrenceRow.mjs";
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export * from "./ConditionOccurrenceRow.mjs";
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export * from "./CreateOmopResponse.mjs";
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export * from "./DroppedResource.mjs";
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export * from "./DrugExposureRow.mjs";
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export * from "./MappingReportEntry.mjs";
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export * from "./MeasurementRow.mjs";
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export * from "./ObservationRow.mjs";
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export * from "./OmopTables.mjs";
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export * from "./PersonRow.mjs";
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export * from "./ProcedureOccurrenceRow.mjs";
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export * from "./ScanSummary.mjs";
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export * from "./VisitOccurrenceRow.mjs";
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export * as cohort from "./cohort/index.mjs";
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export * as construe from "./construe/index.mjs";
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export * as fhir from "./fhir/index.mjs";
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export * as fhir2Omop from "./fhir2Omop/index.mjs";
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export * as fhirProvider from "./fhirProvider/index.mjs";
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export * as lang2Fhir from "./lang2Fhir/index.mjs";
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export * as summary from "./summary/index.mjs";
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export * as construe from "./construe/index.mjs";
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export * as fhir from "./fhir/index.mjs";
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export * as fhir2Omop from "./fhir2Omop/index.mjs";
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export * as fhirProvider from "./fhirProvider/index.mjs";
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export * as lang2Fhir from "./lang2Fhir/index.mjs";
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export * as summary from "./summary/index.mjs";
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package/dist/esm/version.d.mts
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export declare const SDK_VERSION = "17.0
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export declare const SDK_VERSION = "17.2.0";
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package/dist/esm/version.mjs
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export const SDK_VERSION = "17.0
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export const SDK_VERSION = "17.2.0";
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