phenoml 17.0.1 → 17.1.0

package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.js

@@ -0,0 +1,54 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.UnauthorizedError = void 0;
+const errors = __importStar(require("../../../../errors/index.js"));
+class UnauthorizedError extends errors.phenomlError {
+    constructor(body, rawResponse) {
+        super({
+            message: "UnauthorizedError",
+            statusCode: 401,
+            body: body,
+            rawResponse: rawResponse,
+        });
+        Object.setPrototypeOf(this, new.target.prototype);
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, this.constructor);
+        }
+        this.name = this.constructor.name;
+    }
+}
+exports.UnauthorizedError = UnauthorizedError;

package/dist/cjs/api/resources/fhir2Omop/errors/index.d.ts

@@ -0,0 +1,3 @@
+export * from "./BadRequestError.js";
+export * from "./InternalServerError.js";
+export * from "./UnauthorizedError.js";

package/dist/cjs/api/resources/fhir2Omop/errors/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./BadRequestError.js"), exports);
+__exportStar(require("./InternalServerError.js"), exports);
+__exportStar(require("./UnauthorizedError.js"), exports);

package/dist/cjs/api/resources/fhir2Omop/exports.d.ts

@@ -0,0 +1,2 @@
+export { Fhir2OmopClient } from "./client/Client.js";
+export * from "./client/index.js";

package/dist/cjs/api/resources/fhir2Omop/exports.js

@@ -0,0 +1,21 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Fhir2OmopClient = void 0;
+var Client_js_1 = require("./client/Client.js");
+Object.defineProperty(exports, "Fhir2OmopClient", { enumerable: true, get: function () { return Client_js_1.Fhir2OmopClient; } });
+__exportStar(require("./client/index.js"), exports);

package/dist/cjs/api/resources/fhir2Omop/index.d.ts

@@ -0,0 +1,3 @@
+export * from "./client/index.js";
+export * from "./errors/index.js";
+export * from "./types/index.js";

package/dist/cjs/api/resources/fhir2Omop/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./client/index.js"), exports);
+__exportStar(require("./errors/index.js"), exports);
+__exportStar(require("./types/index.js"), exports);

package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.ts

@@ -0,0 +1,12 @@
+export interface ConditionOccurrenceRow {
+    condition_occurrence_id?: number | undefined;
+    person_id?: number | undefined;
+    condition_concept_id?: number | undefined;
+    condition_start_date?: string | undefined;
+    condition_start_datetime?: string | undefined;
+    condition_end_date?: string | undefined;
+    condition_type_concept_id?: number | undefined;
+    condition_source_value?: string | undefined;
+    condition_source_concept_id?: number | undefined;
+    condition_status_source_value?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/CreateOmopResponse.d.ts

@@ -0,0 +1,11 @@
+import type * as phenoml from "../../../index.js";
+export interface CreateOmopResponse {
+    success?: boolean | undefined;
+    message?: string | undefined;
+    /** Resolution mode. `structural` means all clinical concept_ids are 0 (vocabulary crosswalk pending). */
+    mode?: string | undefined;
+    tables?: phenoml.fhir2Omop.OmopTables | undefined;
+    /** One Usagi-shaped entry per source coding routed through concept resolution. */
+    report?: phenoml.fhir2Omop.MappingReportEntry[] | undefined;
+    scan_summary?: phenoml.fhir2Omop.ScanSummary | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/CreateOmopResponse.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/DroppedResource.d.ts

@@ -0,0 +1,5 @@
+export interface DroppedResource {
+    resource_type?: string | undefined;
+    resource_id?: string | undefined;
+    reason?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/DroppedResource.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.d.ts

@@ -0,0 +1,13 @@
+export interface DrugExposureRow {
+    drug_exposure_id?: number | undefined;
+    person_id?: number | undefined;
+    drug_concept_id?: number | undefined;
+    drug_exposure_start_date?: string | undefined;
+    drug_exposure_start_datetime?: string | undefined;
+    drug_exposure_end_date?: string | undefined;
+    drug_type_concept_id?: number | undefined;
+    stop_reason?: string | undefined;
+    sig?: string | undefined;
+    drug_source_value?: string | undefined;
+    drug_source_concept_id?: number | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/MappingReportEntry.d.ts

@@ -0,0 +1,18 @@
+/**
+ * One source_to_concept_map-style mapping suggestion (Usagi-shaped).
+ */
+export interface MappingReportEntry {
+    resource_type?: string | undefined;
+    resource_id?: string | undefined;
+    omop_table?: string | undefined;
+    source_system?: string | undefined;
+    source_code?: string | undefined;
+    source_name?: string | undefined;
+    target_vocabulary?: string | undefined;
+    target_code?: string | undefined;
+    target_name?: string | undefined;
+    /** ALREADY_STANDARD (source already in target vocabulary), UNCHECKED (unreviewed suggestion), or UNMAPPED (no candidate found). */
+    mapping_status?: string | undefined;
+    equivalence?: string | undefined;
+    note?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/MappingReportEntry.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.d.ts

@@ -0,0 +1,17 @@
+export interface MeasurementRow {
+    measurement_id?: number | undefined;
+    person_id?: number | undefined;
+    measurement_concept_id?: number | undefined;
+    measurement_date?: string | undefined;
+    measurement_datetime?: string | undefined;
+    measurement_type_concept_id?: number | undefined;
+    value_as_number?: number | undefined;
+    value_as_concept_id?: number | undefined;
+    unit_concept_id?: number | undefined;
+    range_low?: number | undefined;
+    range_high?: number | undefined;
+    measurement_source_value?: string | undefined;
+    measurement_source_concept_id?: number | undefined;
+    unit_source_value?: string | undefined;
+    value_source_value?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.d.ts

@@ -0,0 +1,16 @@
+export interface ObservationRow {
+    observation_id?: number | undefined;
+    person_id?: number | undefined;
+    observation_concept_id?: number | undefined;
+    observation_date?: string | undefined;
+    observation_datetime?: string | undefined;
+    observation_type_concept_id?: number | undefined;
+    value_as_number?: number | undefined;
+    value_as_string?: string | undefined;
+    value_as_concept_id?: number | undefined;
+    unit_concept_id?: number | undefined;
+    observation_source_value?: string | undefined;
+    observation_source_concept_id?: number | undefined;
+    unit_source_value?: string | undefined;
+    value_source_value?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.d.ts

@@ -0,0 +1,13 @@
+import type * as phenoml from "../../../index.js";
+/**
+ * OMOP CDM v5.4 rows grouped by destination table.
+ */
+export interface OmopTables {
+    person?: phenoml.fhir2Omop.PersonRow[] | undefined;
+    visit_occurrence?: phenoml.fhir2Omop.VisitOccurrenceRow[] | undefined;
+    condition_occurrence?: phenoml.fhir2Omop.ConditionOccurrenceRow[] | undefined;
+    drug_exposure?: phenoml.fhir2Omop.DrugExposureRow[] | undefined;
+    procedure_occurrence?: phenoml.fhir2Omop.ProcedureOccurrenceRow[] | undefined;
+    measurement?: phenoml.fhir2Omop.MeasurementRow[] | undefined;
+    observation?: phenoml.fhir2Omop.ObservationRow[] | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.d.ts

@@ -0,0 +1,14 @@
+export interface PersonRow {
+    person_id?: number | undefined;
+    gender_concept_id?: number | undefined;
+    year_of_birth?: number | undefined;
+    month_of_birth?: number | undefined;
+    day_of_birth?: number | undefined;
+    birth_datetime?: string | undefined;
+    race_concept_id?: number | undefined;
+    ethnicity_concept_id?: number | undefined;
+    person_source_value?: string | undefined;
+    gender_source_value?: string | undefined;
+    race_source_value?: string | undefined;
+    ethnicity_source_value?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.ts

@@ -0,0 +1,10 @@
+export interface ProcedureOccurrenceRow {
+    procedure_occurrence_id?: number | undefined;
+    person_id?: number | undefined;
+    procedure_concept_id?: number | undefined;
+    procedure_date?: string | undefined;
+    procedure_datetime?: string | undefined;
+    procedure_type_concept_id?: number | undefined;
+    procedure_source_value?: string | undefined;
+    procedure_source_concept_id?: number | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/ScanSummary.d.ts

@@ -0,0 +1,15 @@
+import type * as phenoml from "../../../index.js";
+/**
+ * White Rabbit-style aggregate profile of the mapping request.
+ */
+export interface ScanSummary {
+    total_resources?: number | undefined;
+    resource_counts?: Record<string, number> | undefined;
+    tables_populated?: Record<string, number> | undefined;
+    coding_systems?: Record<string, number> | undefined;
+    codes_already_standard?: number | undefined;
+    codes_normalized?: number | undefined;
+    codes_unmapped?: number | undefined;
+    off_vocab_rate?: number | undefined;
+    dropped_resources?: phenoml.fhir2Omop.DroppedResource[] | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/ScanSummary.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.ts

@@ -0,0 +1,11 @@
+export interface VisitOccurrenceRow {
+    visit_occurrence_id?: number | undefined;
+    person_id?: number | undefined;
+    visit_concept_id?: number | undefined;
+    visit_start_date?: string | undefined;
+    visit_start_datetime?: string | undefined;
+    visit_end_date?: string | undefined;
+    visit_end_datetime?: string | undefined;
+    visit_type_concept_id?: number | undefined;
+    visit_source_value?: string | undefined;
+}

package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/fhir2Omop/types/index.d.ts

@@ -0,0 +1,12 @@
+export * from "./ConditionOccurrenceRow.js";
+export * from "./CreateOmopResponse.js";
+export * from "./DroppedResource.js";
+export * from "./DrugExposureRow.js";
+export * from "./MappingReportEntry.js";
+export * from "./MeasurementRow.js";
+export * from "./ObservationRow.js";
+export * from "./OmopTables.js";
+export * from "./PersonRow.js";
+export * from "./ProcedureOccurrenceRow.js";
+export * from "./ScanSummary.js";
+export * from "./VisitOccurrenceRow.js";

package/dist/cjs/api/resources/fhir2Omop/types/index.js

@@ -0,0 +1,28 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./ConditionOccurrenceRow.js"), exports);
+__exportStar(require("./CreateOmopResponse.js"), exports);
+__exportStar(require("./DroppedResource.js"), exports);
+__exportStar(require("./DrugExposureRow.js"), exports);
+__exportStar(require("./MappingReportEntry.js"), exports);
+__exportStar(require("./MeasurementRow.js"), exports);
+__exportStar(require("./ObservationRow.js"), exports);
+__exportStar(require("./OmopTables.js"), exports);
+__exportStar(require("./PersonRow.js"), exports);
+__exportStar(require("./ProcedureOccurrenceRow.js"), exports);
+__exportStar(require("./ScanSummary.js"), exports);
+__exportStar(require("./VisitOccurrenceRow.js"), exports);

package/dist/cjs/api/resources/index.d.ts

@@ -3,6 +3,7 @@ export * as authtoken from "./authtoken/index.js";
 export * as cohort from "./cohort/index.js";
 export * as construe from "./construe/index.js";
 export * as fhir from "./fhir/index.js";
+export * as fhir2Omop from "./fhir2Omop/index.js";
 export * as fhirProvider from "./fhirProvider/index.js";
 export * as lang2Fhir from "./lang2Fhir/index.js";
 export * as summary from "./summary/index.js";

package/dist/cjs/api/resources/index.js

@@ -33,12 +33,13 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.workflows = exports.tools = exports.summary = exports.lang2Fhir = exports.fhirProvider = exports.fhir = exports.construe = exports.cohort = exports.authtoken = exports.agent = void 0;
+exports.workflows = exports.tools = exports.summary = exports.lang2Fhir = exports.fhirProvider = exports.fhir2Omop = exports.fhir = exports.construe = exports.cohort = exports.authtoken = exports.agent = void 0;
 exports.agent = __importStar(require("./agent/index.js"));
 exports.authtoken = __importStar(require("./authtoken/index.js"));
 exports.cohort = __importStar(require("./cohort/index.js"));
 exports.construe = __importStar(require("./construe/index.js"));
 exports.fhir = __importStar(require("./fhir/index.js"));
+exports.fhir2Omop = __importStar(require("./fhir2Omop/index.js"));
 exports.fhirProvider = __importStar(require("./fhirProvider/index.js"));
 exports.lang2Fhir = __importStar(require("./lang2Fhir/index.js"));
 exports.summary = __importStar(require("./summary/index.js"));

package/dist/cjs/version.d.ts

@@ -1 +1 @@
-export declare const SDK_VERSION = "17.0.1";
+export declare const SDK_VERSION = "17.1.0";

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.SDK_VERSION = void 0;
-exports.SDK_VERSION = "17.0.1";
+exports.SDK_VERSION = "17.1.0";

package/dist/esm/BaseClient.mjs

@@ -6,8 +6,8 @@ export function normalizeClientOptions(options) {
     const headers = mergeHeaders({
         "X-Fern-Language": "JavaScript",
         "X-Fern-SDK-Name": "phenoml",
-        "X-Fern-SDK-Version": "17.0.1",
-        "User-Agent": "phenoml/17.0.1",
+        "X-Fern-SDK-Version": "17.1.0",
+        "User-Agent": "phenoml/17.1.0",
         "X-Fern-Runtime": core.RUNTIME.type,
         "X-Fern-Runtime-Version": core.RUNTIME.version,
     }, options === null || options === void 0 ? void 0 : options.headers);

package/dist/esm/Client.d.mts

@@ -3,6 +3,7 @@ import { AuthtokenClient } from "./api/resources/authtoken/client/Client.mjs";
 import { CohortClient } from "./api/resources/cohort/client/Client.mjs";
 import { ConstrueClient } from "./api/resources/construe/client/Client.mjs";
 import { FhirClient } from "./api/resources/fhir/client/Client.mjs";
+import { Fhir2OmopClient } from "./api/resources/fhir2Omop/client/Client.mjs";
 import { FhirProviderClient } from "./api/resources/fhirProvider/client/Client.mjs";
 import { Lang2FhirClient } from "./api/resources/lang2Fhir/client/Client.mjs";
 import { SummaryClient } from "./api/resources/summary/client/Client.mjs";
@@ -23,6 +24,7 @@ export declare class phenomlClient {
     protected _cohort: CohortClient | undefined;
     protected _construe: ConstrueClient | undefined;
     protected _fhir: FhirClient | undefined;
+    protected _fhir2Omop: Fhir2OmopClient | undefined;
     protected _fhirProvider: FhirProviderClient | undefined;
     protected _lang2Fhir: Lang2FhirClient | undefined;
     protected _summary: SummaryClient | undefined;
@@ -34,6 +36,7 @@ export declare class phenomlClient {
     get cohort(): CohortClient;
     get construe(): ConstrueClient;
     get fhir(): FhirClient;
+    get fhir2Omop(): Fhir2OmopClient;
     get fhirProvider(): FhirProviderClient;
     get lang2Fhir(): Lang2FhirClient;
     get summary(): SummaryClient;

package/dist/esm/Client.mjs

@@ -13,6 +13,7 @@ import { AuthtokenClient } from "./api/resources/authtoken/client/Client.mjs";
 import { CohortClient } from "./api/resources/cohort/client/Client.mjs";
 import { ConstrueClient } from "./api/resources/construe/client/Client.mjs";
 import { FhirClient } from "./api/resources/fhir/client/Client.mjs";
+import { Fhir2OmopClient } from "./api/resources/fhir2Omop/client/Client.mjs";
 import { FhirProviderClient } from "./api/resources/fhirProvider/client/Client.mjs";
 import { Lang2FhirClient } from "./api/resources/lang2Fhir/client/Client.mjs";
 import { SummaryClient } from "./api/resources/summary/client/Client.mjs";
@@ -44,6 +45,10 @@ export class phenomlClient {
         var _a;
         return ((_a = this._fhir) !== null && _a !== void 0 ? _a : (this._fhir = new FhirClient(this._options)));
     }
+    get fhir2Omop() {
+        var _a;
+        return ((_a = this._fhir2Omop) !== null && _a !== void 0 ? _a : (this._fhir2Omop = new Fhir2OmopClient(this._options)));
+    }
     get fhirProvider() {
         var _a;
         return ((_a = this._fhirProvider) !== null && _a !== void 0 ? _a : (this._fhirProvider = new FhirProviderClient(this._options)));

package/dist/esm/api/resources/fhir2Omop/client/Client.d.mts

@@ -0,0 +1,110 @@
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.mjs";
+import { type NormalizedClientOptionsWithAuth } from "../../../../BaseClient.mjs";
+import * as core from "../../../../core/index.mjs";
+import * as phenoml from "../../../index.mjs";
+export declare namespace Fhir2OmopClient {
+    type Options = BaseClientOptions;
+    interface RequestOptions extends BaseRequestOptions {
+    }
+}
+export declare class Fhir2OmopClient {
+    protected readonly _options: NormalizedClientOptionsWithAuth<Fhir2OmopClient.Options>;
+    constructor(options?: Fhir2OmopClient.Options);
+    /**
+     * Shapes a FHIR R4 resource or Bundle into OMOP Common Data Model v5.4 rows
+     * (person, visit_occurrence, condition_occurrence, drug_exposure,
+     * procedure_occurrence, measurement, observation).
+     *
+     * **This is a structural mapping (`mode: "structural"`).** Rows are
+     * structurally valid OMOP, but every clinical and source `concept_id` is `0`:
+     * the vocabulary crosswalk that assigns real OMOP `concept_id`s is a planned
+     * follow-up. Each `*_source_value` carries the verbatim FHIR coding
+     * (`system#code`), `*_type_concept_id` is set to `32817` (EHR), and the
+     * response `report` lists a standard-code *suggestion* for each source coding
+     * (already-standard, an unchecked normalization suggestion, or unmapped). Do
+     * not treat the output as analytically resolved OMOP until `concept_id`s are
+     * populated.
+     *
+     * Medication codes are resolved whether they appear inline
+     * (`medicationCodeableConcept`) or via a `medicationReference` to a contained,
+     * relative (`Type/id`), or bundle-entry (`urn:uuid`) `Medication` resource.
+     * A medication with no usable code, resolvable reference, or display is
+     * reported under `scan_summary.dropped_resources` rather than emitted as a
+     * blank row. The bundle must contain at least one Patient resource.
+     *
+     * @param {phenoml.fhir2Omop.CreateOmopRequest} request
+     * @param {Fhir2OmopClient.RequestOptions} requestOptions - Request-specific configuration.
+     *
+     * @throws {@link phenoml.fhir2Omop.BadRequestError}
+     * @throws {@link phenoml.fhir2Omop.UnauthorizedError}
+     * @throws {@link phenoml.fhir2Omop.InternalServerError}
+     *
+     * @example
+     *     await client.fhir2Omop.create({
+     *         fhir_resources: {
+     *             "resourceType": "Bundle",
+     *             "type": "collection",
+     *             "entry": [
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "Patient",
+     *                         "id": "patient-1",
+     *                         "gender": "female",
+     *                         "birthDate": "1985-07-22"
+     *                     }
+     *                 },
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "Condition",
+     *                         "id": "condition-1",
+     *                         "subject": {
+     *                             "reference": "Patient/patient-1"
+     *                         },
+     *                         "code": {
+     *                             "coding": [
+     *                                 {
+     *                                     "system": "http://snomed.info/sct",
+     *                                     "code": "44054006",
+     *                                     "display": "Type 2 diabetes mellitus"
+     *                                 }
+     *                             ]
+     *                         },
+     *                         "onsetDateTime": "2024-01-15"
+     *                     }
+     *                 },
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "MedicationRequest",
+     *                         "id": "medreq-1",
+     *                         "status": "active",
+     *                         "subject": {
+     *                             "reference": "Patient/patient-1"
+     *                         },
+     *                         "medicationReference": {
+     *                             "reference": "#med0"
+     *                         },
+     *                         "authoredOn": "2024-01-16",
+     *                         "contained": [
+     *                             {
+     *                                 "resourceType": "Medication",
+     *                                 "id": "med0",
+     *                                 "code": {
+     *                                     "coding": [
+     *                                         {
+     *                                             "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+     *                                             "code": "860975",
+     *                                             "display": "metformin hydrochloride 500 MG"
+     *                                         }
+     *                                     ]
+     *                                 }
+     *                             }
+     *                         ]
+     *                     }
+     *                 }
+     *             ]
+     *         }
+     *     })
+     */
+    create(request: phenoml.fhir2Omop.CreateOmopRequest, requestOptions?: Fhir2OmopClient.RequestOptions): core.HttpResponsePromise<phenoml.fhir2Omop.CreateOmopResponse>;
+    private __create;
+}