phenoml 17.0.0 → 17.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (111) hide show
  1. package/dist/cjs/BaseClient.js +2 -2
  2. package/dist/cjs/Client.d.ts +3 -0
  3. package/dist/cjs/Client.js +15 -10
  4. package/dist/cjs/api/resources/fhir2Omop/client/Client.d.ts +110 -0
  5. package/dist/cjs/api/resources/fhir2Omop/client/Client.js +198 -0
  6. package/dist/cjs/api/resources/fhir2Omop/client/index.d.ts +1 -0
  7. package/dist/cjs/api/resources/fhir2Omop/client/index.js +17 -0
  8. package/dist/cjs/api/resources/fhir2Omop/client/requests/CreateOmopRequest.d.ts +76 -0
  9. package/dist/cjs/api/resources/fhir2Omop/client/requests/CreateOmopRequest.js +3 -0
  10. package/dist/cjs/api/resources/fhir2Omop/client/requests/index.d.ts +1 -0
  11. package/dist/cjs/api/resources/fhir2Omop/client/requests/index.js +2 -0
  12. package/dist/cjs/api/resources/fhir2Omop/errors/BadRequestError.d.ts +5 -0
  13. package/dist/cjs/api/resources/fhir2Omop/errors/BadRequestError.js +54 -0
  14. package/dist/cjs/api/resources/fhir2Omop/errors/InternalServerError.d.ts +5 -0
  15. package/dist/cjs/api/resources/fhir2Omop/errors/InternalServerError.js +54 -0
  16. package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.d.ts +5 -0
  17. package/dist/cjs/api/resources/fhir2Omop/errors/UnauthorizedError.js +54 -0
  18. package/dist/cjs/api/resources/fhir2Omop/errors/index.d.ts +3 -0
  19. package/dist/cjs/api/resources/fhir2Omop/errors/index.js +19 -0
  20. package/dist/cjs/api/resources/fhir2Omop/exports.d.ts +2 -0
  21. package/dist/cjs/api/resources/fhir2Omop/exports.js +21 -0
  22. package/dist/cjs/api/resources/fhir2Omop/index.d.ts +3 -0
  23. package/dist/cjs/api/resources/fhir2Omop/index.js +19 -0
  24. package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.ts +12 -0
  25. package/dist/cjs/api/resources/fhir2Omop/types/ConditionOccurrenceRow.js +3 -0
  26. package/dist/cjs/api/resources/fhir2Omop/types/CreateOmopResponse.d.ts +11 -0
  27. package/dist/cjs/api/resources/fhir2Omop/types/CreateOmopResponse.js +3 -0
  28. package/dist/cjs/api/resources/fhir2Omop/types/DroppedResource.d.ts +5 -0
  29. package/dist/cjs/api/resources/fhir2Omop/types/DroppedResource.js +3 -0
  30. package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.d.ts +13 -0
  31. package/dist/cjs/api/resources/fhir2Omop/types/DrugExposureRow.js +3 -0
  32. package/dist/cjs/api/resources/fhir2Omop/types/MappingReportEntry.d.ts +18 -0
  33. package/dist/cjs/api/resources/fhir2Omop/types/MappingReportEntry.js +3 -0
  34. package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.d.ts +17 -0
  35. package/dist/cjs/api/resources/fhir2Omop/types/MeasurementRow.js +3 -0
  36. package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.d.ts +16 -0
  37. package/dist/cjs/api/resources/fhir2Omop/types/ObservationRow.js +3 -0
  38. package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.d.ts +13 -0
  39. package/dist/cjs/api/resources/fhir2Omop/types/OmopTables.js +3 -0
  40. package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.d.ts +14 -0
  41. package/dist/cjs/api/resources/fhir2Omop/types/PersonRow.js +3 -0
  42. package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.ts +10 -0
  43. package/dist/cjs/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.js +3 -0
  44. package/dist/cjs/api/resources/fhir2Omop/types/ScanSummary.d.ts +15 -0
  45. package/dist/cjs/api/resources/fhir2Omop/types/ScanSummary.js +3 -0
  46. package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.ts +11 -0
  47. package/dist/cjs/api/resources/fhir2Omop/types/VisitOccurrenceRow.js +3 -0
  48. package/dist/cjs/api/resources/fhir2Omop/types/index.d.ts +12 -0
  49. package/dist/cjs/api/resources/fhir2Omop/types/index.js +28 -0
  50. package/dist/cjs/api/resources/index.d.ts +1 -0
  51. package/dist/cjs/api/resources/index.js +2 -1
  52. package/dist/cjs/core/fetcher/getResponseBody.js +11 -0
  53. package/dist/cjs/version.d.ts +1 -1
  54. package/dist/cjs/version.js +1 -1
  55. package/dist/esm/BaseClient.mjs +2 -2
  56. package/dist/esm/Client.d.mts +3 -0
  57. package/dist/esm/Client.mjs +5 -0
  58. package/dist/esm/api/resources/fhir2Omop/client/Client.d.mts +110 -0
  59. package/dist/esm/api/resources/fhir2Omop/client/Client.mjs +161 -0
  60. package/dist/esm/api/resources/fhir2Omop/client/index.d.mts +1 -0
  61. package/dist/esm/api/resources/fhir2Omop/client/index.mjs +1 -0
  62. package/dist/esm/api/resources/fhir2Omop/client/requests/CreateOmopRequest.d.mts +76 -0
  63. package/dist/esm/api/resources/fhir2Omop/client/requests/CreateOmopRequest.mjs +2 -0
  64. package/dist/esm/api/resources/fhir2Omop/client/requests/index.d.mts +1 -0
  65. package/dist/esm/api/resources/fhir2Omop/client/requests/index.mjs +1 -0
  66. package/dist/esm/api/resources/fhir2Omop/errors/BadRequestError.d.mts +5 -0
  67. package/dist/esm/api/resources/fhir2Omop/errors/BadRequestError.mjs +17 -0
  68. package/dist/esm/api/resources/fhir2Omop/errors/InternalServerError.d.mts +5 -0
  69. package/dist/esm/api/resources/fhir2Omop/errors/InternalServerError.mjs +17 -0
  70. package/dist/esm/api/resources/fhir2Omop/errors/UnauthorizedError.d.mts +5 -0
  71. package/dist/esm/api/resources/fhir2Omop/errors/UnauthorizedError.mjs +17 -0
  72. package/dist/esm/api/resources/fhir2Omop/errors/index.d.mts +3 -0
  73. package/dist/esm/api/resources/fhir2Omop/errors/index.mjs +3 -0
  74. package/dist/esm/api/resources/fhir2Omop/exports.d.mts +2 -0
  75. package/dist/esm/api/resources/fhir2Omop/exports.mjs +3 -0
  76. package/dist/esm/api/resources/fhir2Omop/index.d.mts +3 -0
  77. package/dist/esm/api/resources/fhir2Omop/index.mjs +3 -0
  78. package/dist/esm/api/resources/fhir2Omop/types/ConditionOccurrenceRow.d.mts +12 -0
  79. package/dist/esm/api/resources/fhir2Omop/types/ConditionOccurrenceRow.mjs +2 -0
  80. package/dist/esm/api/resources/fhir2Omop/types/CreateOmopResponse.d.mts +11 -0
  81. package/dist/esm/api/resources/fhir2Omop/types/CreateOmopResponse.mjs +2 -0
  82. package/dist/esm/api/resources/fhir2Omop/types/DroppedResource.d.mts +5 -0
  83. package/dist/esm/api/resources/fhir2Omop/types/DroppedResource.mjs +2 -0
  84. package/dist/esm/api/resources/fhir2Omop/types/DrugExposureRow.d.mts +13 -0
  85. package/dist/esm/api/resources/fhir2Omop/types/DrugExposureRow.mjs +2 -0
  86. package/dist/esm/api/resources/fhir2Omop/types/MappingReportEntry.d.mts +18 -0
  87. package/dist/esm/api/resources/fhir2Omop/types/MappingReportEntry.mjs +2 -0
  88. package/dist/esm/api/resources/fhir2Omop/types/MeasurementRow.d.mts +17 -0
  89. package/dist/esm/api/resources/fhir2Omop/types/MeasurementRow.mjs +2 -0
  90. package/dist/esm/api/resources/fhir2Omop/types/ObservationRow.d.mts +16 -0
  91. package/dist/esm/api/resources/fhir2Omop/types/ObservationRow.mjs +2 -0
  92. package/dist/esm/api/resources/fhir2Omop/types/OmopTables.d.mts +13 -0
  93. package/dist/esm/api/resources/fhir2Omop/types/OmopTables.mjs +2 -0
  94. package/dist/esm/api/resources/fhir2Omop/types/PersonRow.d.mts +14 -0
  95. package/dist/esm/api/resources/fhir2Omop/types/PersonRow.mjs +2 -0
  96. package/dist/esm/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.d.mts +10 -0
  97. package/dist/esm/api/resources/fhir2Omop/types/ProcedureOccurrenceRow.mjs +2 -0
  98. package/dist/esm/api/resources/fhir2Omop/types/ScanSummary.d.mts +15 -0
  99. package/dist/esm/api/resources/fhir2Omop/types/ScanSummary.mjs +2 -0
  100. package/dist/esm/api/resources/fhir2Omop/types/VisitOccurrenceRow.d.mts +11 -0
  101. package/dist/esm/api/resources/fhir2Omop/types/VisitOccurrenceRow.mjs +2 -0
  102. package/dist/esm/api/resources/fhir2Omop/types/index.d.mts +12 -0
  103. package/dist/esm/api/resources/fhir2Omop/types/index.mjs +12 -0
  104. package/dist/esm/api/resources/index.d.mts +1 -0
  105. package/dist/esm/api/resources/index.mjs +1 -0
  106. package/dist/esm/core/fetcher/getResponseBody.mjs +11 -0
  107. package/dist/esm/version.d.mts +1 -1
  108. package/dist/esm/version.mjs +1 -1
  109. package/openapi/openapi.json +731 -1
  110. package/package.json +15 -4
  111. package/reference.md +146 -0
@@ -0,0 +1,54 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
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+ Object.defineProperty(o, "default", { enumerable: true, value: v });
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+ }) : function(o, v) {
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+ o["default"] = v;
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+ });
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+ var __importStar = (this && this.__importStar) || (function () {
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+ var ownKeys = function(o) {
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+ ownKeys = Object.getOwnPropertyNames || function (o) {
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+ var ar = [];
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+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
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+ return ar;
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+ };
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+ return ownKeys(o);
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+ };
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+ return function (mod) {
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+ if (mod && mod.__esModule) return mod;
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+ var result = {};
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+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
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+ __setModuleDefault(result, mod);
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+ return result;
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+ };
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+ })();
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.UnauthorizedError = void 0;
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+ const errors = __importStar(require("../../../../errors/index.js"));
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+ class UnauthorizedError extends errors.phenomlError {
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+ constructor(body, rawResponse) {
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+ super({
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+ message: "UnauthorizedError",
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+ statusCode: 401,
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+ body: body,
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+ rawResponse: rawResponse,
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+ });
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+ Object.setPrototypeOf(this, new.target.prototype);
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+ if (Error.captureStackTrace) {
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+ Error.captureStackTrace(this, this.constructor);
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+ }
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+ this.name = this.constructor.name;
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+ }
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+ }
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+ exports.UnauthorizedError = UnauthorizedError;
@@ -0,0 +1,3 @@
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+ export * from "./BadRequestError.js";
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+ export * from "./InternalServerError.js";
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+ export * from "./UnauthorizedError.js";
@@ -0,0 +1,19 @@
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+ "use strict";
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __exportStar = (this && this.__exportStar) || function(m, exports) {
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+ for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ __exportStar(require("./BadRequestError.js"), exports);
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+ __exportStar(require("./InternalServerError.js"), exports);
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+ __exportStar(require("./UnauthorizedError.js"), exports);
@@ -0,0 +1,2 @@
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+ export { Fhir2OmopClient } from "./client/Client.js";
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+ export * from "./client/index.js";
@@ -0,0 +1,21 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __exportStar = (this && this.__exportStar) || function(m, exports) {
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+ for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.Fhir2OmopClient = void 0;
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+ var Client_js_1 = require("./client/Client.js");
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+ Object.defineProperty(exports, "Fhir2OmopClient", { enumerable: true, get: function () { return Client_js_1.Fhir2OmopClient; } });
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+ __exportStar(require("./client/index.js"), exports);
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+ export * from "./client/index.js";
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+ export * from "./errors/index.js";
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+ export * from "./types/index.js";
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+ "use strict";
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+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ var desc = Object.getOwnPropertyDescriptor(m, k);
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+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
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+ desc = { enumerable: true, get: function() { return m[k]; } };
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+ }
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+ Object.defineProperty(o, k2, desc);
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+ }) : (function(o, m, k, k2) {
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+ if (k2 === undefined) k2 = k;
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+ o[k2] = m[k];
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+ }));
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+ var __exportStar = (this && this.__exportStar) || function(m, exports) {
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+ for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
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+ };
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ __exportStar(require("./client/index.js"), exports);
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+ __exportStar(require("./errors/index.js"), exports);
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+ __exportStar(require("./types/index.js"), exports);
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+ export interface ConditionOccurrenceRow {
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+ condition_occurrence_id?: number | undefined;
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+ person_id?: number | undefined;
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+ condition_concept_id?: number | undefined;
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+ condition_start_date?: string | undefined;
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+ condition_start_datetime?: string | undefined;
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+ condition_end_date?: string | undefined;
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+ condition_type_concept_id?: number | undefined;
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+ condition_source_value?: string | undefined;
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+ condition_source_concept_id?: number | undefined;
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+ condition_status_source_value?: string | undefined;
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+ }
@@ -0,0 +1,3 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ import type * as phenoml from "../../../index.js";
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+ export interface CreateOmopResponse {
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+ success?: boolean | undefined;
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+ message?: string | undefined;
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+ /** Resolution mode. `structural` means all clinical concept_ids are 0 (vocabulary crosswalk pending). */
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+ mode?: string | undefined;
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+ tables?: phenoml.fhir2Omop.OmopTables | undefined;
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+ /** One Usagi-shaped entry per source coding routed through concept resolution. */
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+ report?: phenoml.fhir2Omop.MappingReportEntry[] | undefined;
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+ scan_summary?: phenoml.fhir2Omop.ScanSummary | undefined;
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+ }
@@ -0,0 +1,3 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ export interface DroppedResource {
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+ resource_type?: string | undefined;
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+ resource_id?: string | undefined;
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+ reason?: string | undefined;
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+ }
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ export interface DrugExposureRow {
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+ drug_exposure_id?: number | undefined;
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+ person_id?: number | undefined;
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+ drug_concept_id?: number | undefined;
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+ drug_exposure_start_date?: string | undefined;
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+ drug_exposure_start_datetime?: string | undefined;
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+ drug_exposure_end_date?: string | undefined;
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+ drug_type_concept_id?: number | undefined;
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+ stop_reason?: string | undefined;
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+ sig?: string | undefined;
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+ drug_source_value?: string | undefined;
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+ drug_source_concept_id?: number | undefined;
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+ }
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ /**
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+ * One source_to_concept_map-style mapping suggestion (Usagi-shaped).
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+ */
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+ export interface MappingReportEntry {
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+ resource_type?: string | undefined;
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+ resource_id?: string | undefined;
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+ omop_table?: string | undefined;
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+ source_system?: string | undefined;
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+ source_code?: string | undefined;
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+ source_name?: string | undefined;
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+ target_vocabulary?: string | undefined;
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+ target_code?: string | undefined;
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+ target_name?: string | undefined;
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+ /** ALREADY_STANDARD (source already in target vocabulary), UNCHECKED (unreviewed suggestion), or UNMAPPED (no candidate found). */
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+ mapping_status?: string | undefined;
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+ equivalence?: string | undefined;
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+ note?: string | undefined;
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+ }
@@ -0,0 +1,3 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ export interface MeasurementRow {
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+ measurement_id?: number | undefined;
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+ person_id?: number | undefined;
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+ measurement_concept_id?: number | undefined;
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+ measurement_date?: string | undefined;
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+ measurement_datetime?: string | undefined;
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+ measurement_type_concept_id?: number | undefined;
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+ value_as_number?: number | undefined;
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+ value_as_concept_id?: number | undefined;
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+ unit_concept_id?: number | undefined;
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+ range_low?: number | undefined;
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+ range_high?: number | undefined;
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+ measurement_source_value?: string | undefined;
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+ measurement_source_concept_id?: number | undefined;
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+ unit_source_value?: string | undefined;
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+ value_source_value?: string | undefined;
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+ }
@@ -0,0 +1,3 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ export interface ObservationRow {
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+ observation_id?: number | undefined;
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+ person_id?: number | undefined;
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+ observation_concept_id?: number | undefined;
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+ observation_date?: string | undefined;
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+ observation_datetime?: string | undefined;
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+ observation_type_concept_id?: number | undefined;
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+ value_as_number?: number | undefined;
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+ value_as_string?: string | undefined;
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+ value_as_concept_id?: number | undefined;
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+ unit_concept_id?: number | undefined;
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+ observation_source_value?: string | undefined;
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+ observation_source_concept_id?: number | undefined;
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+ unit_source_value?: string | undefined;
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+ value_source_value?: string | undefined;
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+ }
@@ -0,0 +1,3 @@
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+ "use strict";
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+ // This file was auto-generated by Fern from our API Definition.
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+ Object.defineProperty(exports, "__esModule", { value: true });
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+ import type * as phenoml from "../../../index.js";
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+ /**
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+ * OMOP CDM v5.4 rows grouped by destination table.
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+ */
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+ export interface OmopTables {
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+ person?: phenoml.fhir2Omop.PersonRow[] | undefined;
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+ visit_occurrence?: phenoml.fhir2Omop.VisitOccurrenceRow[] | undefined;
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+ condition_occurrence?: phenoml.fhir2Omop.ConditionOccurrenceRow[] | undefined;
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+ drug_exposure?: phenoml.fhir2Omop.DrugExposureRow[] | undefined;
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+ procedure_occurrence?: phenoml.fhir2Omop.ProcedureOccurrenceRow[] | undefined;
11
+ measurement?: phenoml.fhir2Omop.MeasurementRow[] | undefined;
12
+ observation?: phenoml.fhir2Omop.ObservationRow[] | undefined;
13
+ }
@@ -0,0 +1,3 @@
1
+ "use strict";
2
+ // This file was auto-generated by Fern from our API Definition.
3
+ Object.defineProperty(exports, "__esModule", { value: true });
@@ -0,0 +1,14 @@
1
+ export interface PersonRow {
2
+ person_id?: number | undefined;
3
+ gender_concept_id?: number | undefined;
4
+ year_of_birth?: number | undefined;
5
+ month_of_birth?: number | undefined;
6
+ day_of_birth?: number | undefined;
7
+ birth_datetime?: string | undefined;
8
+ race_concept_id?: number | undefined;
9
+ ethnicity_concept_id?: number | undefined;
10
+ person_source_value?: string | undefined;
11
+ gender_source_value?: string | undefined;
12
+ race_source_value?: string | undefined;
13
+ ethnicity_source_value?: string | undefined;
14
+ }
@@ -0,0 +1,3 @@
1
+ "use strict";
2
+ // This file was auto-generated by Fern from our API Definition.
3
+ Object.defineProperty(exports, "__esModule", { value: true });
@@ -0,0 +1,10 @@
1
+ export interface ProcedureOccurrenceRow {
2
+ procedure_occurrence_id?: number | undefined;
3
+ person_id?: number | undefined;
4
+ procedure_concept_id?: number | undefined;
5
+ procedure_date?: string | undefined;
6
+ procedure_datetime?: string | undefined;
7
+ procedure_type_concept_id?: number | undefined;
8
+ procedure_source_value?: string | undefined;
9
+ procedure_source_concept_id?: number | undefined;
10
+ }
@@ -0,0 +1,3 @@
1
+ "use strict";
2
+ // This file was auto-generated by Fern from our API Definition.
3
+ Object.defineProperty(exports, "__esModule", { value: true });
@@ -0,0 +1,15 @@
1
+ import type * as phenoml from "../../../index.js";
2
+ /**
3
+ * White Rabbit-style aggregate profile of the mapping request.
4
+ */
5
+ export interface ScanSummary {
6
+ total_resources?: number | undefined;
7
+ resource_counts?: Record<string, number> | undefined;
8
+ tables_populated?: Record<string, number> | undefined;
9
+ coding_systems?: Record<string, number> | undefined;
10
+ codes_already_standard?: number | undefined;
11
+ codes_normalized?: number | undefined;
12
+ codes_unmapped?: number | undefined;
13
+ off_vocab_rate?: number | undefined;
14
+ dropped_resources?: phenoml.fhir2Omop.DroppedResource[] | undefined;
15
+ }
@@ -0,0 +1,3 @@
1
+ "use strict";
2
+ // This file was auto-generated by Fern from our API Definition.
3
+ Object.defineProperty(exports, "__esModule", { value: true });
@@ -0,0 +1,11 @@
1
+ export interface VisitOccurrenceRow {
2
+ visit_occurrence_id?: number | undefined;
3
+ person_id?: number | undefined;
4
+ visit_concept_id?: number | undefined;
5
+ visit_start_date?: string | undefined;
6
+ visit_start_datetime?: string | undefined;
7
+ visit_end_date?: string | undefined;
8
+ visit_end_datetime?: string | undefined;
9
+ visit_type_concept_id?: number | undefined;
10
+ visit_source_value?: string | undefined;
11
+ }
@@ -0,0 +1,3 @@
1
+ "use strict";
2
+ // This file was auto-generated by Fern from our API Definition.
3
+ Object.defineProperty(exports, "__esModule", { value: true });
@@ -0,0 +1,12 @@
1
+ export * from "./ConditionOccurrenceRow.js";
2
+ export * from "./CreateOmopResponse.js";
3
+ export * from "./DroppedResource.js";
4
+ export * from "./DrugExposureRow.js";
5
+ export * from "./MappingReportEntry.js";
6
+ export * from "./MeasurementRow.js";
7
+ export * from "./ObservationRow.js";
8
+ export * from "./OmopTables.js";
9
+ export * from "./PersonRow.js";
10
+ export * from "./ProcedureOccurrenceRow.js";
11
+ export * from "./ScanSummary.js";
12
+ export * from "./VisitOccurrenceRow.js";
@@ -0,0 +1,28 @@
1
+ "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __exportStar = (this && this.__exportStar) || function(m, exports) {
14
+ for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
15
+ };
16
+ Object.defineProperty(exports, "__esModule", { value: true });
17
+ __exportStar(require("./ConditionOccurrenceRow.js"), exports);
18
+ __exportStar(require("./CreateOmopResponse.js"), exports);
19
+ __exportStar(require("./DroppedResource.js"), exports);
20
+ __exportStar(require("./DrugExposureRow.js"), exports);
21
+ __exportStar(require("./MappingReportEntry.js"), exports);
22
+ __exportStar(require("./MeasurementRow.js"), exports);
23
+ __exportStar(require("./ObservationRow.js"), exports);
24
+ __exportStar(require("./OmopTables.js"), exports);
25
+ __exportStar(require("./PersonRow.js"), exports);
26
+ __exportStar(require("./ProcedureOccurrenceRow.js"), exports);
27
+ __exportStar(require("./ScanSummary.js"), exports);
28
+ __exportStar(require("./VisitOccurrenceRow.js"), exports);
@@ -3,6 +3,7 @@ export * as authtoken from "./authtoken/index.js";
3
3
  export * as cohort from "./cohort/index.js";
4
4
  export * as construe from "./construe/index.js";
5
5
  export * as fhir from "./fhir/index.js";
6
+ export * as fhir2Omop from "./fhir2Omop/index.js";
6
7
  export * as fhirProvider from "./fhirProvider/index.js";
7
8
  export * as lang2Fhir from "./lang2Fhir/index.js";
8
9
  export * as summary from "./summary/index.js";
@@ -33,12 +33,13 @@ var __importStar = (this && this.__importStar) || (function () {
33
33
  };
34
34
  })();
35
35
  Object.defineProperty(exports, "__esModule", { value: true });
36
- exports.workflows = exports.tools = exports.summary = exports.lang2Fhir = exports.fhirProvider = exports.fhir = exports.construe = exports.cohort = exports.authtoken = exports.agent = void 0;
36
+ exports.workflows = exports.tools = exports.summary = exports.lang2Fhir = exports.fhirProvider = exports.fhir2Omop = exports.fhir = exports.construe = exports.cohort = exports.authtoken = exports.agent = void 0;
37
37
  exports.agent = __importStar(require("./agent/index.js"));
38
38
  exports.authtoken = __importStar(require("./authtoken/index.js"));
39
39
  exports.cohort = __importStar(require("./cohort/index.js"));
40
40
  exports.construe = __importStar(require("./construe/index.js"));
41
41
  exports.fhir = __importStar(require("./fhir/index.js"));
42
+ exports.fhir2Omop = __importStar(require("./fhir2Omop/index.js"));
42
43
  exports.fhirProvider = __importStar(require("./fhirProvider/index.js"));
43
44
  exports.lang2Fhir = __importStar(require("./lang2Fhir/index.js"));
44
45
  exports.summary = __importStar(require("./summary/index.js"));
@@ -12,6 +12,15 @@ Object.defineProperty(exports, "__esModule", { value: true });
12
12
  exports.getResponseBody = getResponseBody;
13
13
  const json_js_1 = require("../json.js");
14
14
  const BinaryResponse_js_1 = require("./BinaryResponse.js");
15
+ // Pins the upstream Response so undici's FinalizationRegistry can't GC it and cancel the body stream.
16
+ function retainResponse(target, response) {
17
+ Object.defineProperty(target, "__fern_response_ref", {
18
+ value: response,
19
+ enumerable: false,
20
+ configurable: true,
21
+ writable: false,
22
+ });
23
+ }
15
24
  function getResponseBody(response, responseType) {
16
25
  return __awaiter(this, void 0, void 0, function* () {
17
26
  switch (responseType) {
@@ -31,6 +40,7 @@ function getResponseBody(response, responseType) {
31
40
  },
32
41
  };
33
42
  }
43
+ retainResponse(response.body, response);
34
44
  return response.body;
35
45
  case "streaming":
36
46
  if (response.body == null) {
@@ -42,6 +52,7 @@ function getResponseBody(response, responseType) {
42
52
  },
43
53
  };
44
54
  }
55
+ retainResponse(response.body, response);
45
56
  return response.body;
46
57
  case "text":
47
58
  return yield response.text();
@@ -1 +1 @@
1
- export declare const SDK_VERSION = "17.0.0";
1
+ export declare const SDK_VERSION = "17.1.0";
@@ -1,4 +1,4 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.SDK_VERSION = void 0;
4
- exports.SDK_VERSION = "17.0.0";
4
+ exports.SDK_VERSION = "17.1.0";
@@ -6,8 +6,8 @@ export function normalizeClientOptions(options) {
6
6
  const headers = mergeHeaders({
7
7
  "X-Fern-Language": "JavaScript",
8
8
  "X-Fern-SDK-Name": "phenoml",
9
- "X-Fern-SDK-Version": "17.0.0",
10
- "User-Agent": "phenoml/17.0.0",
9
+ "X-Fern-SDK-Version": "17.1.0",
10
+ "User-Agent": "phenoml/17.1.0",
11
11
  "X-Fern-Runtime": core.RUNTIME.type,
12
12
  "X-Fern-Runtime-Version": core.RUNTIME.version,
13
13
  }, options === null || options === void 0 ? void 0 : options.headers);
@@ -3,6 +3,7 @@ import { AuthtokenClient } from "./api/resources/authtoken/client/Client.mjs";
3
3
  import { CohortClient } from "./api/resources/cohort/client/Client.mjs";
4
4
  import { ConstrueClient } from "./api/resources/construe/client/Client.mjs";
5
5
  import { FhirClient } from "./api/resources/fhir/client/Client.mjs";
6
+ import { Fhir2OmopClient } from "./api/resources/fhir2Omop/client/Client.mjs";
6
7
  import { FhirProviderClient } from "./api/resources/fhirProvider/client/Client.mjs";
7
8
  import { Lang2FhirClient } from "./api/resources/lang2Fhir/client/Client.mjs";
8
9
  import { SummaryClient } from "./api/resources/summary/client/Client.mjs";
@@ -23,6 +24,7 @@ export declare class phenomlClient {
23
24
  protected _cohort: CohortClient | undefined;
24
25
  protected _construe: ConstrueClient | undefined;
25
26
  protected _fhir: FhirClient | undefined;
27
+ protected _fhir2Omop: Fhir2OmopClient | undefined;
26
28
  protected _fhirProvider: FhirProviderClient | undefined;
27
29
  protected _lang2Fhir: Lang2FhirClient | undefined;
28
30
  protected _summary: SummaryClient | undefined;
@@ -34,6 +36,7 @@ export declare class phenomlClient {
34
36
  get cohort(): CohortClient;
35
37
  get construe(): ConstrueClient;
36
38
  get fhir(): FhirClient;
39
+ get fhir2Omop(): Fhir2OmopClient;
37
40
  get fhirProvider(): FhirProviderClient;
38
41
  get lang2Fhir(): Lang2FhirClient;
39
42
  get summary(): SummaryClient;
@@ -13,6 +13,7 @@ import { AuthtokenClient } from "./api/resources/authtoken/client/Client.mjs";
13
13
  import { CohortClient } from "./api/resources/cohort/client/Client.mjs";
14
14
  import { ConstrueClient } from "./api/resources/construe/client/Client.mjs";
15
15
  import { FhirClient } from "./api/resources/fhir/client/Client.mjs";
16
+ import { Fhir2OmopClient } from "./api/resources/fhir2Omop/client/Client.mjs";
16
17
  import { FhirProviderClient } from "./api/resources/fhirProvider/client/Client.mjs";
17
18
  import { Lang2FhirClient } from "./api/resources/lang2Fhir/client/Client.mjs";
18
19
  import { SummaryClient } from "./api/resources/summary/client/Client.mjs";
@@ -44,6 +45,10 @@ export class phenomlClient {
44
45
  var _a;
45
46
  return ((_a = this._fhir) !== null && _a !== void 0 ? _a : (this._fhir = new FhirClient(this._options)));
46
47
  }
48
+ get fhir2Omop() {
49
+ var _a;
50
+ return ((_a = this._fhir2Omop) !== null && _a !== void 0 ? _a : (this._fhir2Omop = new Fhir2OmopClient(this._options)));
51
+ }
47
52
  get fhirProvider() {
48
53
  var _a;
49
54
  return ((_a = this._fhirProvider) !== null && _a !== void 0 ? _a : (this._fhirProvider = new FhirProviderClient(this._options)));