phenoml 13.1.0 → 14.0.0

package/dist/esm/api/resources/construe/client/Client.d.mts

@@ -30,7 +30,24 @@ export declare class ConstrueClient {
      *     await client.construe.uploadCodeSystem({
      *         name: "CUSTOM_CODES",
      *         version: "1.0",
-     *         format: "csv"
+     *         format: "json",
+     *         codes: [{
+     *                 code: "X001",
+     *                 description: "Example custom code 1"
+     *             }, {
+     *                 code: "X002",
+     *                 description: "Example custom code 2"
+     *             }]
+     *     })
+     *
+     * @example
+     *     await client.construe.uploadCodeSystem({
+     *         name: "CUSTOM_CODES",
+     *         version: "1.0",
+     *         format: "csv",
+     *         file: "Y29kZSxkZXNjcmlwdGlvbgpYMDAxLEV4YW1wbGUgY3VzdG9tIGNvZGUgMQo=",
+     *         code_col: "code",
+     *         desc_col: "description"
      *     })
      */
     uploadCodeSystem(request: phenoml.construe.UploadRequest, requestOptions?: ConstrueClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.ConstrueUploadCodeSystemResponse>;
@@ -52,7 +69,66 @@ export declare class ConstrueClient {
      *
      * @example
      *     await client.construe.extractCodes({
-     *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney"
+     *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney.",
+     *         system: {
+     *             name: "ICD-10-CM",
+     *             version: "2025"
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
+     *         system: {
+     *             name: "SNOMED_CT_US_LITE",
+     *             version: "20240901"
+     *         },
+     *         config: {
+     *             chunking_method: "sentences",
+     *             validation_method: "simple",
+     *             include_rationale: true,
+     *             include_citations: true
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "Start Metformin 500mg twice daily for type 2 diabetes. Continue Lisinopril 10mg daily for hypertension. Add Atorvastatin 20mg at bedtime.",
+     *         system: {
+     *             name: "RXNORM",
+     *             version: "11042024"
+     *         },
+     *         config: {
+     *             validation_method: "medication_search",
+     *             include_rationale: true
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "Patient diagnosed with Type 2 diabetes mellitus with diabetic chronic kidney disease, stage 3.",
+     *         system: {
+     *             name: "ICD-10-CM",
+     *             version: "2025"
+     *         },
+     *         config: {
+     *             validation_method: "simple",
+     *             include_ancestors: true
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
+     *         system: {
+     *             name: "HPO",
+     *             version: "2025"
+     *         },
+     *         config: {
+     *             chunking_method: "fasthpocr",
+     *             validation_method: "none",
+     *             include_rationale: false
+     *         }
      *     })
      */
     extractCodes(request: phenoml.construe.ExtractRequest, requestOptions?: ConstrueClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.ExtractCodesResult>;
@@ -163,7 +239,8 @@ export declare class ConstrueClient {
      * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
      *
      * @param {string} codesystem - Code system name
-     * @param {string} codeID - The code identifier
+     * @param {string} codeID - The code identifier. ICD-10-CM codes are stored without their
+     *                          cosmetic dot (use "E1165", not "E11.65").
      * @param {phenoml.construe.GetConstrueCodesCodesystemCodeIdRequest} request
      * @param {ConstrueClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -173,7 +250,7 @@ export declare class ConstrueClient {
      * @throws {@link phenoml.construe.InternalServerError}
      *
      * @example
-     *     await client.construe.getASpecificCode("ICD-10-CM", "E11.65", {
+     *     await client.construe.getASpecificCode("ICD-10-CM", "E1165", {
      *         version: "version"
      *     })
      */
@@ -234,21 +311,28 @@ export declare class ConstrueClient {
      *     await client.construe.submitFeedbackOnExtractionResults({
      *         text: "Patient has type 2 diabetes with hyperglycemia",
      *         received_result: {
-     *             system: {},
+     *             system: {
+     *                 name: "ICD-10-CM",
+     *                 version: "2025"
+     *             },
      *             codes: [{
-     *                     code: "195967001",
-     *                     description: "Asthma",
+     *                     code: "E11.9",
+     *                     description: "Type 2 diabetes mellitus without complications",
      *                     valid: true
      *                 }]
      *         },
      *         expected_result: {
-     *             system: {},
+     *             system: {
+     *                 name: "ICD-10-CM",
+     *                 version: "2025"
+     *             },
      *             codes: [{
-     *                     code: "195967001",
-     *                     description: "Asthma",
+     *                     code: "E11.65",
+     *                     description: "Type 2 diabetes mellitus with hyperglycemia",
      *                     valid: true
      *                 }]
-     *         }
+     *         },
+     *         detail: "Expected code E11.65 because the text mentions hyperglycemia"
      *     })
      */
     submitFeedbackOnExtractionResults(request: phenoml.construe.FeedbackRequest, requestOptions?: ConstrueClient.RequestOptions): core.HttpResponsePromise<phenoml.construe.FeedbackResponse>;

package/dist/esm/api/resources/construe/client/Client.mjs

@@ -39,7 +39,24 @@ export class ConstrueClient {
      *     await client.construe.uploadCodeSystem({
      *         name: "CUSTOM_CODES",
      *         version: "1.0",
-     *         format: "csv"
+     *         format: "json",
+     *         codes: [{
+     *                 code: "X001",
+     *                 description: "Example custom code 1"
+     *             }, {
+     *                 code: "X002",
+     *                 description: "Example custom code 2"
+     *             }]
+     *     })
+     *
+     * @example
+     *     await client.construe.uploadCodeSystem({
+     *         name: "CUSTOM_CODES",
+     *         version: "1.0",
+     *         format: "csv",
+     *         file: "Y29kZSxkZXNjcmlwdGlvbgpYMDAxLEV4YW1wbGUgY3VzdG9tIGNvZGUgMQo=",
+     *         code_col: "code",
+     *         desc_col: "description"
      *     })
      */
     uploadCodeSystem(request, requestOptions) {
@@ -112,7 +129,66 @@ export class ConstrueClient {
      *
      * @example
      *     await client.construe.extractCodes({
-     *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney"
+     *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney.",
+     *         system: {
+     *             name: "ICD-10-CM",
+     *             version: "2025"
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
+     *         system: {
+     *             name: "SNOMED_CT_US_LITE",
+     *             version: "20240901"
+     *         },
+     *         config: {
+     *             chunking_method: "sentences",
+     *             validation_method: "simple",
+     *             include_rationale: true,
+     *             include_citations: true
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "Start Metformin 500mg twice daily for type 2 diabetes. Continue Lisinopril 10mg daily for hypertension. Add Atorvastatin 20mg at bedtime.",
+     *         system: {
+     *             name: "RXNORM",
+     *             version: "11042024"
+     *         },
+     *         config: {
+     *             validation_method: "medication_search",
+     *             include_rationale: true
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "Patient diagnosed with Type 2 diabetes mellitus with diabetic chronic kidney disease, stage 3.",
+     *         system: {
+     *             name: "ICD-10-CM",
+     *             version: "2025"
+     *         },
+     *         config: {
+     *             validation_method: "simple",
+     *             include_ancestors: true
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.construe.extractCodes({
+     *         text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
+     *         system: {
+     *             name: "HPO",
+     *             version: "2025"
+     *         },
+     *         config: {
+     *             chunking_method: "fasthpocr",
+     *             validation_method: "none",
+     *             include_rationale: false
+     *         }
      *     })
      */
     extractCodes(request, requestOptions) {
@@ -526,7 +602,8 @@ export class ConstrueClient {
      * Usage of CPT is subject to AMA requirements: see PhenoML Terms of Service.
      *
      * @param {string} codesystem - Code system name
-     * @param {string} codeID - The code identifier
+     * @param {string} codeID - The code identifier. ICD-10-CM codes are stored without their
+     *                          cosmetic dot (use "E1165", not "E11.65").
      * @param {phenoml.construe.GetConstrueCodesCodesystemCodeIdRequest} request
      * @param {ConstrueClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -536,7 +613,7 @@ export class ConstrueClient {
      * @throws {@link phenoml.construe.InternalServerError}
      *
      * @example
-     *     await client.construe.getASpecificCode("ICD-10-CM", "E11.65", {
+     *     await client.construe.getASpecificCode("ICD-10-CM", "E1165", {
      *         version: "version"
      *     })
      */
@@ -700,21 +777,28 @@ export class ConstrueClient {
      *     await client.construe.submitFeedbackOnExtractionResults({
      *         text: "Patient has type 2 diabetes with hyperglycemia",
      *         received_result: {
-     *             system: {},
+     *             system: {
+     *                 name: "ICD-10-CM",
+     *                 version: "2025"
+     *             },
      *             codes: [{
-     *                     code: "195967001",
-     *                     description: "Asthma",
+     *                     code: "E11.9",
+     *                     description: "Type 2 diabetes mellitus without complications",
      *                     valid: true
      *                 }]
      *         },
      *         expected_result: {
-     *             system: {},
+     *             system: {
+     *                 name: "ICD-10-CM",
+     *                 version: "2025"
+     *             },
      *             codes: [{
-     *                     code: "195967001",
-     *                     description: "Asthma",
+     *                     code: "E11.65",
+     *                     description: "Type 2 diabetes mellitus with hyperglycemia",
      *                     valid: true
      *                 }]
-     *         }
+     *         },
+     *         detail: "Expected code E11.65 because the text mentions hyperglycemia"
      *     })
      */
     submitFeedbackOnExtractionResults(request, requestOptions) {

package/dist/esm/api/resources/construe/client/requests/ExtractRequest.d.mts

@@ -2,7 +2,66 @@ import type * as phenoml from "../../../../index.mjs";
 /**
  * @example
  *     {
- *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney"
+ *         text: "Patient is a 14-year-old female, previously healthy, who is here for evaluation of abnormal renal ultrasound with atrophic right kidney.",
+ *         system: {
+ *             name: "ICD-10-CM",
+ *             version: "2025"
+ *         }
+ *     }
+ *
+ * @example
+ *     {
+ *         text: "45-year-old male presents with chest pain radiating to left arm, shortness of breath, and diaphoresis. ECG shows ST elevation in leads II, III, and aVF.",
+ *         system: {
+ *             name: "SNOMED_CT_US_LITE",
+ *             version: "20240901"
+ *         },
+ *         config: {
+ *             chunking_method: "sentences",
+ *             validation_method: "simple",
+ *             include_rationale: true,
+ *             include_citations: true
+ *         }
+ *     }
+ *
+ * @example
+ *     {
+ *         text: "Start Metformin 500mg twice daily for type 2 diabetes. Continue Lisinopril 10mg daily for hypertension. Add Atorvastatin 20mg at bedtime.",
+ *         system: {
+ *             name: "RXNORM",
+ *             version: "11042024"
+ *         },
+ *         config: {
+ *             validation_method: "medication_search",
+ *             include_rationale: true
+ *         }
+ *     }
+ *
+ * @example
+ *     {
+ *         text: "Patient diagnosed with Type 2 diabetes mellitus with diabetic chronic kidney disease, stage 3.",
+ *         system: {
+ *             name: "ICD-10-CM",
+ *             version: "2025"
+ *         },
+ *         config: {
+ *             validation_method: "simple",
+ *             include_ancestors: true
+ *         }
+ *     }
+ *
+ * @example
+ *     {
+ *         text: "5-year-old male with seizures, severe intellectual disability, microcephaly, and hypotonia.",
+ *         system: {
+ *             name: "HPO",
+ *             version: "2025"
+ *         },
+ *         config: {
+ *             chunking_method: "fasthpocr",
+ *             validation_method: "none",
+ *             include_rationale: false
+ *         }
  *     }
  */
 export interface ExtractRequest {

package/dist/esm/api/resources/construe/client/requests/FeedbackRequest.d.mts

@@ -4,21 +4,28 @@ import type * as phenoml from "../../../../index.mjs";
  *     {
  *         text: "Patient has type 2 diabetes with hyperglycemia",
  *         received_result: {
- *             system: {},
+ *             system: {
+ *                 name: "ICD-10-CM",
+ *                 version: "2025"
+ *             },
  *             codes: [{
- *                     code: "195967001",
- *                     description: "Asthma",
+ *                     code: "E11.9",
+ *                     description: "Type 2 diabetes mellitus without complications",
  *                     valid: true
  *                 }]
  *         },
  *         expected_result: {
- *             system: {},
+ *             system: {
+ *                 name: "ICD-10-CM",
+ *                 version: "2025"
+ *             },
  *             codes: [{
- *                     code: "195967001",
- *                     description: "Asthma",
+ *                     code: "E11.65",
+ *                     description: "Type 2 diabetes mellitus with hyperglycemia",
  *                     valid: true
  *                 }]
- *         }
+ *         },
+ *         detail: "Expected code E11.65 because the text mentions hyperglycemia"
  *     }
  */
 export interface FeedbackRequest {

package/dist/esm/api/resources/construe/client/requests/UploadRequest.d.mts

@@ -4,7 +4,24 @@ import type * as phenoml from "../../../../index.mjs";
  *     {
  *         name: "CUSTOM_CODES",
  *         version: "1.0",
- *         format: "csv"
+ *         format: "json",
+ *         codes: [{
+ *                 code: "X001",
+ *                 description: "Example custom code 1"
+ *             }, {
+ *                 code: "X002",
+ *                 description: "Example custom code 2"
+ *             }]
+ *     }
+ *
+ * @example
+ *     {
+ *         name: "CUSTOM_CODES",
+ *         version: "1.0",
+ *         format: "csv",
+ *         file: "Y29kZSxkZXNjcmlwdGlvbgpYMDAxLEV4YW1wbGUgY3VzdG9tIGNvZGUgMQo=",
+ *         code_col: "code",
+ *         desc_col: "description"
  *     }
  */
 export interface UploadRequest {

package/dist/esm/api/resources/fhirProvider/client/Client.d.mts

@@ -26,11 +26,13 @@ export declare class FhirProviderClient {
      * @example
      *     await client.fhirProvider.create({
      *         name: "Epic Sandbox",
-     *         provider: "athenahealth",
+     *         description: "Epic sandbox environment for testing",
+     *         provider: "epic",
      *         base_url: "https://fhir.epic.com/interconnect-fhir-oauth/api/FHIR/R4",
      *         auth: {
-     *             auth_method: "jwt",
-     *             client_id: "your-client-id"
+     *             auth_method: "client_secret",
+     *             client_id: "your-client-id",
+     *             client_secret: "your-client-secret"
      *         }
      *     })
      */
@@ -106,8 +108,9 @@ export declare class FhirProviderClient {
      *
      * @example
      *     await client.fhirProvider.addAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad", {
-     *         auth_method: "jwt",
-     *         client_id: "your-client-id"
+     *         auth_method: "client_secret",
+     *         client_id: "your-client-id",
+     *         client_secret: "your-client-secret"
      *     })
      */
     addAuthConfig(fhir_provider_id: string, request: phenoml.fhirProvider.FhirProviderAddAuthConfigRequest, requestOptions?: FhirProviderClient.RequestOptions): core.HttpResponsePromise<phenoml.fhirProvider.FhirProviderResponse>;
@@ -133,7 +136,7 @@ export declare class FhirProviderClient {
      *
      * @example
      *     await client.fhirProvider.setActiveAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad", {
-     *         auth_config_id: "auth-config-123"
+     *         auth_config_id: "auth-config-456"
      *     })
      */
     setActiveAuthConfig(fhir_provider_id: string, request: phenoml.fhirProvider.FhirProviderSetActiveAuthConfigRequest, requestOptions?: FhirProviderClient.RequestOptions): core.HttpResponsePromise<phenoml.fhirProvider.FhirProviderResponse>;
@@ -156,7 +159,7 @@ export declare class FhirProviderClient {
      *
      * @example
      *     await client.fhirProvider.removeAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad", {
-     *         auth_config_id: "auth-config-123"
+     *         auth_config_id: "auth-config-456"
      *     })
      */
     removeAuthConfig(fhir_provider_id: string, request: phenoml.fhirProvider.FhirProviderRemoveAuthConfigRequest, requestOptions?: FhirProviderClient.RequestOptions): core.HttpResponsePromise<phenoml.fhirProvider.FhirProviderRemoveAuthConfigResponse>;

package/dist/esm/api/resources/fhirProvider/client/Client.mjs

@@ -35,11 +35,13 @@ export class FhirProviderClient {
      * @example
      *     await client.fhirProvider.create({
      *         name: "Epic Sandbox",
-     *         provider: "athenahealth",
+     *         description: "Epic sandbox environment for testing",
+     *         provider: "epic",
      *         base_url: "https://fhir.epic.com/interconnect-fhir-oauth/api/FHIR/R4",
      *         auth: {
-     *             auth_method: "jwt",
-     *             client_id: "your-client-id"
+     *             auth_method: "client_secret",
+     *             client_id: "your-client-id",
+     *             client_secret: "your-client-secret"
      *         }
      *     })
      */
@@ -288,8 +290,9 @@ export class FhirProviderClient {
      *
      * @example
      *     await client.fhirProvider.addAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad", {
-     *         auth_method: "jwt",
-     *         client_id: "your-client-id"
+     *         auth_method: "client_secret",
+     *         client_id: "your-client-id",
+     *         client_secret: "your-client-secret"
      *     })
      */
     addAuthConfig(fhir_provider_id, request, requestOptions) {
@@ -364,7 +367,7 @@ export class FhirProviderClient {
      *
      * @example
      *     await client.fhirProvider.setActiveAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad", {
-     *         auth_config_id: "auth-config-123"
+     *         auth_config_id: "auth-config-456"
      *     })
      */
     setActiveAuthConfig(fhir_provider_id, request, requestOptions) {
@@ -436,7 +439,7 @@ export class FhirProviderClient {
      *
      * @example
      *     await client.fhirProvider.removeAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad", {
-     *         auth_config_id: "auth-config-123"
+     *         auth_config_id: "auth-config-456"
      *     })
      */
     removeAuthConfig(fhir_provider_id, request, requestOptions) {

package/dist/esm/api/resources/fhirProvider/client/requests/FhirProviderCreateRequest.d.mts

@@ -3,11 +3,13 @@ import type * as phenoml from "../../../../index.mjs";
  * @example
  *     {
  *         name: "Epic Sandbox",
- *         provider: "athenahealth",
+ *         description: "Epic sandbox environment for testing",
+ *         provider: "epic",
  *         base_url: "https://fhir.epic.com/interconnect-fhir-oauth/api/FHIR/R4",
  *         auth: {
- *             auth_method: "jwt",
- *             client_id: "your-client-id"
+ *             auth_method: "client_secret",
+ *             client_id: "your-client-id",
+ *             client_secret: "your-client-secret"
  *         }
  *     }
  */

package/dist/esm/api/resources/fhirProvider/client/requests/FhirProviderRemoveAuthConfigRequest.d.mts

@@ -1,7 +1,7 @@
 /**
  * @example
  *     {
- *         auth_config_id: "auth-config-123"
+ *         auth_config_id: "auth-config-456"
  *     }
  */
 export interface FhirProviderRemoveAuthConfigRequest {

package/dist/esm/api/resources/fhirProvider/client/requests/FhirProviderSetActiveAuthConfigRequest.d.mts

@@ -1,7 +1,7 @@
 /**
  * @example
  *     {
- *         auth_config_id: "auth-config-123"
+ *         auth_config_id: "auth-config-456"
  *     }
  */
 export interface FhirProviderSetActiveAuthConfigRequest {

package/dist/esm/api/resources/fhirProvider/types/FhirProviderSandboxInfo.d.mts

@@ -1,13 +1,15 @@
 /**
- * Information returned for sandbox FHIR providers.
+ * Limited information returned for sandbox FHIR providers. Sandbox
+ * responses omit `auth_configs` and `last_updated`, which is what
+ * distinguishes this shape from `FhirProviderTemplate` in `oneOf`.
  */
 export interface FhirProviderSandboxInfo {
     /** Unique identifier for the FHIR provider */
-    id?: string | undefined;
+    id: string;
     /** Display name for the FHIR provider */
-    name?: string | undefined;
+    name: string;
     /** Optional description of the FHIR provider */
     description?: string | undefined;
     /** Provider type (always "sandbox" for this schema) */
-    provider?: "sandbox" | undefined;
+    provider: "sandbox";
 }

package/dist/esm/api/resources/fhirProvider/types/FhirProviderTemplate.d.mts

@@ -1,18 +1,23 @@
 import type * as phenoml from "../../../index.mjs";
+/**
+ * Full FHIR provider configuration returned for non-sandbox providers.
+ * `auth_configs` and `last_updated` are always populated, which is how
+ * list responses distinguish this shape from `FhirProviderSandboxInfo`.
+ */
 export interface FhirProviderTemplate {
     /** Unique identifier for the FHIR provider */
-    id?: string | undefined;
+    id: string;
     /** Display name for the FHIR provider */
-    name?: string | undefined;
+    name: string;
     /** Optional description of the FHIR provider */
     description?: string | undefined;
-    provider?: phenoml.fhirProvider.Provider | undefined;
+    provider: phenoml.fhirProvider.Provider;
     /** Base URL of the FHIR server */
     base_url?: string | undefined;
     /** OAuth client ID. Deprecated: use client_id on FhirProviderAuthConfig instead. Retained for backward compatibility with existing providers. */
     client_id?: string | undefined;
     /** Map of authentication configurations (key is auth_config_id) */
-    auth_configs?: Record<string, phenoml.fhirProvider.FhirProviderAuthConfig> | undefined;
+    auth_configs: Record<string, phenoml.fhirProvider.FhirProviderAuthConfig>;
     /** Timestamp when the provider was last updated */
-    last_updated?: string | undefined;
+    last_updated: string;
 }

package/dist/esm/api/resources/lang2Fhir/client/Client.d.mts

@@ -25,8 +25,15 @@ export declare class Lang2FhirClient {
      * @example
      *     await client.lang2Fhir.create({
      *         version: "R4",
-     *         resource: "auto",
-     *         text: "Patient has severe asthma with acute exacerbation"
+     *         resource: "condition-encounter-diagnosis",
+     *         text: "Patient has severe persistent asthma with acute exacerbation"
+     *     })
+     *
+     * @example
+     *     await client.lang2Fhir.create({
+     *         version: "R4",
+     *         resource: "medicationrequest",
+     *         text: "Prescribe Amoxicillin 500mg capsules, take one capsule three times daily for 10 days"
      *     })
      */
     create(request: phenoml.lang2Fhir.CreateRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.FhirResource>;
@@ -47,7 +54,8 @@ export declare class Lang2FhirClient {
      *
      * @example
      *     await client.lang2Fhir.createMulti({
-     *         text: "John Smith, male born on 1980-03-12, diagnosed with Type 2 Diabetes. Prescribed Metformin 500mg twice daily."
+     *         text: "John Smith, 45-year-old male, diagnosed with Type 2 Diabetes. Prescribed Metformin 500mg twice daily. Blood pressure 140/90.",
+     *         version: "R4"
      *     })
      */
     createMulti(request: phenoml.lang2Fhir.CreateMultiRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.CreateMultiResponse>;
@@ -99,7 +107,9 @@ export declare class Lang2FhirClient {
      *
      * @example
      *     await client.lang2Fhir.uploadProfile({
-     *         profile: "(base64 encoded FHIR StructureDefinition JSON)"
+     *         profile: "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",
+     *         implementation_guide: "acme-cardiology",
+     *         profile_context: "When clinical text describes cardiology-specific findings, prefer this profile over the generic US Core Condition."
      *     })
      */
     uploadProfile(request: phenoml.lang2Fhir.ProfileUploadRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.Lang2FhirUploadProfileResponse>;
@@ -120,7 +130,7 @@ export declare class Lang2FhirClient {
      *     await client.lang2Fhir.document({
      *         version: "R4",
      *         resource: "questionnaire",
-     *         content: "content"
+     *         content: "JVBERi0xLjQKJeLjz9MK...(base64-encoded PDF or image bytes)"
      *     })
      */
     document(request: phenoml.lang2Fhir.DocumentRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.FhirResource>;
@@ -144,7 +154,8 @@ export declare class Lang2FhirClient {
      * @example
      *     await client.lang2Fhir.extractMultipleFhirResourcesFromADocument({
      *         version: "R4",
-     *         content: "content"
+     *         content: "JVBERi0xLjQKJeLjz9MK...(base64-encoded PDF or image bytes)",
+     *         provider: "medplum"
      *     })
      */
     extractMultipleFhirResourcesFromADocument(request: phenoml.lang2Fhir.DocumentMultiRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.DocumentMultiResponse>;