phenoml 13.0.0 → 14.0.0

package/dist/cjs/api/resources/summary/client/Client.js

@@ -78,7 +78,7 @@ class SummaryClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "fhir2summary/templates"),
                 method: "GET",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -120,10 +120,10 @@ class SummaryClient {
      *
      * @example
      *     await client.summary.createTemplate({
-     *         name: "name",
-     *         example_summary: "Patient John Doe, age 45, presents with hypertension diagnosed on 2024-01-15.",
-     *         target_resources: ["Patient", "Condition", "Observation"],
-     *         mode: "mode"
+     *         name: "Discharge Summary",
+     *         example_summary: "Patient John Doe, age 45, was admitted on 2024-01-10 with Type 2 Diabetes. Discharged on 2024-01-15 with Metformin 500mg BID.",
+     *         target_resources: ["Patient", "Condition", "MedicationRequest"],
+     *         mode: "narrative"
      *     })
      */
     createTemplate(request, requestOptions) {
@@ -139,7 +139,7 @@ class SummaryClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: request,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
@@ -199,7 +199,7 @@ class SummaryClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir2summary/template/${core.url.encodePathParam(id)}`),
                 method: "GET",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -248,10 +248,10 @@ class SummaryClient {
      *
      * @example
      *     await client.summary.updateTemplate("id", {
-     *         name: "name",
-     *         template: "template",
-     *         target_resources: ["target_resources"],
-     *         mode: "mode"
+     *         name: "Discharge Summary",
+     *         template: "Patient {{Patient.name[0].text}} was discharged on {{Encounter[0].period.end}} with {{MedicationRequest[0].medicationCodeableConcept.coding[0].display}} {{MedicationRequest[0].dosageInstruction[0].text}}.",
+     *         target_resources: ["Patient", "Encounter", "MedicationRequest"],
+     *         mode: "narrative"
      *     })
      */
     updateTemplate(id, request, requestOptions) {
@@ -267,7 +267,7 @@ class SummaryClient {
                 method: "PUT",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: request,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
@@ -331,7 +331,7 @@ class SummaryClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `fhir2summary/template/${core.url.encodePathParam(id)}`),
                 method: "DELETE",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -382,8 +382,73 @@ class SummaryClient {
      *
      * @example
      *     await client.summary.create({
+     *         mode: "narrative",
+     *         template_id: "a1b2c3d4-e5f6-7890-abcd-ef1234567890",
      *         fhir_resources: {
-     *             resourceType: "resourceType"
+     *             "resourceType": "Bundle",
+     *             "type": "collection",
+     *             "entry": [
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "Patient",
+     *                         "name": [
+     *                             {
+     *                                 "given": [
+     *                                     "John"
+     *                                 ],
+     *                                 "family": "Doe"
+     *                             }
+     *                         ],
+     *                         "gender": "male",
+     *                         "birthDate": "1979-03-15"
+     *                     }
+     *                 },
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "Condition",
+     *                         "code": {
+     *                             "text": "Type 2 Diabetes Mellitus"
+     *                         },
+     *                         "onsetDateTime": "2024-01-15"
+     *                     }
+     *                 }
+     *             ]
+     *         }
+     *     })
+     *
+     * @example
+     *     await client.summary.create({
+     *         mode: "ips",
+     *         fhir_resources: {
+     *             "resourceType": "Bundle",
+     *             "type": "collection",
+     *             "entry": [
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "Patient",
+     *                         "id": "maria-garcia-001",
+     *                         "name": [
+     *                             {
+     *                                 "given": [
+     *                                     "Maria"
+     *                                 ],
+     *                                 "family": "Garcia"
+     *                             }
+     *                         ],
+     *                         "gender": "female",
+     *                         "birthDate": "1985-07-22"
+     *                     }
+     *                 },
+     *                 {
+     *                     "resource": {
+     *                         "resourceType": "AllergyIntolerance",
+     *                         "code": {
+     *                             "text": "Penicillin"
+     *                         },
+     *                         "criticality": "high"
+     *                     }
+     *                 }
+     *             ]
      *         }
      *     })
      */
@@ -400,7 +465,7 @@ class SummaryClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: request,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,

package/dist/cjs/api/resources/summary/client/requests/CreateSummaryRequest.d.ts

@@ -1,9 +1,73 @@
-import type * as phenoml from "../../../../index.js";
 /**
  * @example
  *     {
+ *         mode: "narrative",
+ *         template_id: "a1b2c3d4-e5f6-7890-abcd-ef1234567890",
  *         fhir_resources: {
- *             resourceType: "resourceType"
+ *             "resourceType": "Bundle",
+ *             "type": "collection",
+ *             "entry": [
+ *                 {
+ *                     "resource": {
+ *                         "resourceType": "Patient",
+ *                         "name": [
+ *                             {
+ *                                 "given": [
+ *                                     "John"
+ *                                 ],
+ *                                 "family": "Doe"
+ *                             }
+ *                         ],
+ *                         "gender": "male",
+ *                         "birthDate": "1979-03-15"
+ *                     }
+ *                 },
+ *                 {
+ *                     "resource": {
+ *                         "resourceType": "Condition",
+ *                         "code": {
+ *                             "text": "Type 2 Diabetes Mellitus"
+ *                         },
+ *                         "onsetDateTime": "2024-01-15"
+ *                     }
+ *                 }
+ *             ]
+ *         }
+ *     }
+ *
+ * @example
+ *     {
+ *         mode: "ips",
+ *         fhir_resources: {
+ *             "resourceType": "Bundle",
+ *             "type": "collection",
+ *             "entry": [
+ *                 {
+ *                     "resource": {
+ *                         "resourceType": "Patient",
+ *                         "id": "maria-garcia-001",
+ *                         "name": [
+ *                             {
+ *                                 "given": [
+ *                                     "Maria"
+ *                                 ],
+ *                                 "family": "Garcia"
+ *                             }
+ *                         ],
+ *                         "gender": "female",
+ *                         "birthDate": "1985-07-22"
+ *                     }
+ *                 },
+ *                 {
+ *                     "resource": {
+ *                         "resourceType": "AllergyIntolerance",
+ *                         "code": {
+ *                             "text": "Penicillin"
+ *                         },
+ *                         "criticality": "high"
+ *                     }
+ *                 }
+ *             ]
  *         }
  *     }
  */
@@ -24,7 +88,7 @@ export interface CreateSummaryRequest {
      * if multiple Patients are present, or if the Patient has no identifiers. Resources are
      * automatically filtered to only include those referencing the patient.
      */
-    fhir_resources: CreateSummaryRequest.FhirResources;
+    fhir_resources: Record<string, unknown>;
 }
 export declare namespace CreateSummaryRequest {
     /**
@@ -39,12 +103,4 @@ export declare namespace CreateSummaryRequest {
         readonly Ips: "ips";
     };
     type Mode = (typeof Mode)[keyof typeof Mode];
-    /**
-     * FHIR resources (single resource or Bundle).
-     * For IPS mode, must be a Bundle containing exactly one Patient resource with at least one
-     * identifier (id, fullUrl, or identifier field). Returns an error if no Patient is found,
-     * if multiple Patients are present, or if the Patient has no identifiers. Resources are
-     * automatically filtered to only include those referencing the patient.
-     */
-    type FhirResources = phenoml.summary.FhirResource | phenoml.summary.FhirBundle;
 }

package/dist/cjs/api/resources/summary/client/requests/CreateSummaryTemplateRequest.d.ts

@@ -1,10 +1,10 @@
 /**
  * @example
  *     {
- *         name: "name",
- *         example_summary: "Patient John Doe, age 45, presents with hypertension diagnosed on 2024-01-15.",
- *         target_resources: ["Patient", "Condition", "Observation"],
- *         mode: "mode"
+ *         name: "Discharge Summary",
+ *         example_summary: "Patient John Doe, age 45, was admitted on 2024-01-10 with Type 2 Diabetes. Discharged on 2024-01-15 with Metformin 500mg BID.",
+ *         target_resources: ["Patient", "Condition", "MedicationRequest"],
+ *         mode: "narrative"
  *     }
  */
 export interface CreateSummaryTemplateRequest {

package/dist/cjs/api/resources/summary/client/requests/UpdateSummaryTemplateRequest.d.ts

@@ -1,10 +1,10 @@
 /**
  * @example
  *     {
- *         name: "name",
- *         template: "template",
- *         target_resources: ["target_resources"],
- *         mode: "mode"
+ *         name: "Discharge Summary",
+ *         template: "Patient {{Patient.name[0].text}} was discharged on {{Encounter[0].period.end}} with {{MedicationRequest[0].medicationCodeableConcept.coding[0].display}} {{MedicationRequest[0].dosageInstruction[0].text}}.",
+ *         target_resources: ["Patient", "Encounter", "MedicationRequest"],
+ *         mode: "narrative"
  *     }
  */
 export interface UpdateSummaryTemplateRequest {

package/dist/cjs/api/resources/summary/types/index.d.ts

@@ -1,7 +1,5 @@
 export * from "./CreateSummaryResponse.js";
 export * from "./CreateSummaryTemplateResponse.js";
-export * from "./FhirBundle.js";
-export * from "./FhirResource.js";
 export * from "./SummaryDeleteTemplateResponse.js";
 export * from "./SummaryGetTemplateResponse.js";
 export * from "./SummaryListTemplatesResponse.js";

package/dist/cjs/api/resources/summary/types/index.js

@@ -16,8 +16,6 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
 Object.defineProperty(exports, "__esModule", { value: true });
 __exportStar(require("./CreateSummaryResponse.js"), exports);
 __exportStar(require("./CreateSummaryTemplateResponse.js"), exports);
-__exportStar(require("./FhirBundle.js"), exports);
-__exportStar(require("./FhirResource.js"), exports);
 __exportStar(require("./SummaryDeleteTemplateResponse.js"), exports);
 __exportStar(require("./SummaryGetTemplateResponse.js"), exports);
 __exportStar(require("./SummaryListTemplatesResponse.js"), exports);

package/dist/cjs/api/resources/tools/client/Client.d.ts

@@ -29,8 +29,9 @@ export declare class ToolsClient {
      *     await client.tools.createFhirResource({
      *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
-     *         resource: "auto",
-     *         text: "Patient John Doe has severe asthma with acute exacerbation"
+     *         resource: "condition-encounter-diagnosis",
+     *         text: "Patient has severe persistent asthma with acute exacerbation",
+     *         provider: "550e8400-e29b-41d4-a716-446655440000"
      *     })
      */
     createFhirResource(request: phenoml.tools.Lang2FhirAndCreateRequest, requestOptions?: ToolsClient.RequestOptions): core.HttpResponsePromise<phenoml.tools.Lang2FhirAndCreateResponse>;
@@ -56,6 +57,7 @@ export declare class ToolsClient {
      *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
      *         text: "John Smith, 45-year-old male, diagnosed with Type 2 Diabetes. Prescribed Metformin 500mg twice daily.",
+     *         version: "R4",
      *         provider: "medplum"
      *     })
      */
@@ -77,7 +79,9 @@ export declare class ToolsClient {
      *     await client.tools.searchFhirResources({
      *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
-     *         text: "Find all appointments for patient John Doe next week"
+     *         text: "Find all appointments for patient John Doe next week",
+     *         count: 10,
+     *         provider: "550e8400-e29b-41d4-a716-446655440000"
      *     })
      */
     searchFhirResources(request: phenoml.tools.Lang2FhirAndSearchRequest, requestOptions?: ToolsClient.RequestOptions): core.HttpResponsePromise<phenoml.tools.Lang2FhirAndSearchResponse>;

package/dist/cjs/api/resources/tools/client/Client.js

@@ -87,8 +87,9 @@ class ToolsClient {
      *     await client.tools.createFhirResource({
      *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
-     *         resource: "auto",
-     *         text: "Patient John Doe has severe asthma with acute exacerbation"
+     *         resource: "condition-encounter-diagnosis",
+     *         text: "Patient has severe persistent asthma with acute exacerbation",
+     *         provider: "550e8400-e29b-41d4-a716-446655440000"
      *     })
      */
     createFhirResource(request, requestOptions) {
@@ -108,7 +109,7 @@ class ToolsClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
@@ -167,6 +168,7 @@ class ToolsClient {
      *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
      *         text: "John Smith, 45-year-old male, diagnosed with Type 2 Diabetes. Prescribed Metformin 500mg twice daily.",
+     *         version: "R4",
      *         provider: "medplum"
      *     })
      */
@@ -187,7 +189,7 @@ class ToolsClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
@@ -241,7 +243,9 @@ class ToolsClient {
      *     await client.tools.searchFhirResources({
      *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
      *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
-     *         text: "Find all appointments for patient John Doe next week"
+     *         text: "Find all appointments for patient John Doe next week",
+     *         count: 10,
+     *         provider: "550e8400-e29b-41d4-a716-446655440000"
      *     })
      */
     searchFhirResources(request, requestOptions) {
@@ -261,7 +265,7 @@ class ToolsClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
@@ -335,7 +339,7 @@ class ToolsClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,

package/dist/cjs/api/resources/tools/client/requests/Lang2FhirAndCreateMultiRequest.d.ts

@@ -4,6 +4,7 @@
  *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
  *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
  *         text: "John Smith, 45-year-old male, diagnosed with Type 2 Diabetes. Prescribed Metformin 500mg twice daily.",
+ *         version: "R4",
  *         provider: "medplum"
  *     }
  */

package/dist/cjs/api/resources/tools/client/requests/Lang2FhirAndCreateRequest.d.ts

@@ -3,8 +3,9 @@
  *     {
  *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
  *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
- *         resource: "auto",
- *         text: "Patient John Doe has severe asthma with acute exacerbation"
+ *         resource: "condition-encounter-diagnosis",
+ *         text: "Patient has severe persistent asthma with acute exacerbation",
+ *         provider: "550e8400-e29b-41d4-a716-446655440000"
  *     }
  */
 export interface Lang2FhirAndCreateRequest {

package/dist/cjs/api/resources/tools/client/requests/Lang2FhirAndSearchRequest.d.ts

@@ -3,7 +3,9 @@
  *     {
  *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
  *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
- *         text: "Find all appointments for patient John Doe next week"
+ *         text: "Find all appointments for patient John Doe next week",
+ *         count: 10,
+ *         provider: "550e8400-e29b-41d4-a716-446655440000"
  *     }
  */
 export interface Lang2FhirAndSearchRequest {

package/dist/cjs/api/resources/tools/resources/mcpServer/client/Client.js

@@ -90,7 +90,7 @@ class McpServerClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: request,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
@@ -147,7 +147,7 @@ class McpServerClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/mcp-server/list"),
                 method: "GET",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -201,7 +201,7 @@ class McpServerClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcp_server_id)}`),
                 method: "GET",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -255,7 +255,7 @@ class McpServerClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcp_server_id)}`),
                 method: "DELETE",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/Client.js

@@ -80,7 +80,7 @@ class ToolsClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcp_server_id)}/list`),
                 method: "GET",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -134,7 +134,7 @@ class ToolsClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcp_server_tool_id)}`),
                 method: "GET",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -188,7 +188,7 @@ class ToolsClient {
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcp_server_tool_id)}`),
                 method: "DELETE",
                 headers: _headers,
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -249,7 +249,7 @@ class ToolsClient {
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
-                queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
+                queryString: core.url.queryBuilder().mergeAdditional(requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams).build(),
                 requestType: "json",
                 body: request,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,

package/dist/cjs/api/resources/tools/types/McpServer.d.ts

@@ -0,0 +1,10 @@
+export interface McpServer {
+    /** ID of the MCP server */
+    id?: string | undefined;
+    /** Name of the MCP server */
+    name?: string | undefined;
+    /** Description of the MCP server */
+    description?: string | undefined;
+    /** URL of the MCP server */
+    mcp_server_url?: string | undefined;
+}

package/dist/cjs/api/resources/tools/types/McpServerResponse.d.ts

@@ -1,23 +1,19 @@
+import type * as phenoml from "../../../index.js";
 export interface McpServerResponse {
-    /** Whether the MCP server was created successfully */
+    /** Whether the operation succeeded */
     success?: boolean | undefined;
     /** Status message */
     message?: string | undefined;
-    /** MCP server data */
-    data?: McpServerResponse.Data | undefined;
-}
-export declare namespace McpServerResponse {
+    /** Single MCP server (returned by GET /tools/mcp-server/{mcp_server_id}). */
+    data?: phenoml.tools.McpServer | undefined;
+    /**
+     * List of MCP servers. Returned by /tools/mcp-server/create (the
+     * newly created server) and /tools/mcp-server/list (all servers).
+     */
+    mcp_servers?: phenoml.tools.McpServer[] | undefined;
     /**
-     * MCP server data
+     * Tools loaded from the MCP server. Returned by /tools/mcp-server/create
+     * alongside the server record, since tool discovery happens at create time.
      */
-    interface Data {
-        /** ID of the MCP server */
-        id?: string | undefined;
-        /** Name of the MCP server */
-        name?: string | undefined;
-        /** Description of the MCP server */
-        description?: string | undefined;
-        /** URL of the MCP server */
-        mcp_server_url?: string | undefined;
-    }
+    mcp_server_tools?: phenoml.tools.McpServerTool[] | undefined;
 }

package/dist/cjs/api/resources/tools/types/McpServerTool.d.ts

@@ -0,0 +1,14 @@
+export interface McpServerTool {
+    /** ID of the MCP server tool */
+    id?: string | undefined;
+    /** Name of the MCP server tool */
+    name?: string | undefined;
+    /** Description of the MCP server tool */
+    description?: string | undefined;
+    /** Input schema of the MCP server tool */
+    input_schema?: Record<string, unknown> | undefined;
+    /** ID of the MCP server that the tool belongs to */
+    mcp_server_id?: string | undefined;
+    /** URL of the MCP server */
+    mcp_server_url?: string | undefined;
+}

package/dist/cjs/api/resources/tools/types/McpServerToolResponse.d.ts

@@ -1,27 +1,14 @@
+import type * as phenoml from "../../../index.js";
 export interface McpServerToolResponse {
-    /** Whether the MCP server tool was created successfully */
+    /** Whether the operation succeeded */
     success?: boolean | undefined;
     /** Status message */
     message?: string | undefined;
-    /** MCP server tool data */
-    data?: McpServerToolResponse.Data | undefined;
-}
-export declare namespace McpServerToolResponse {
+    /** Single MCP server tool (returned by GET /tools/mcp-server/tool/{mcp_server_tool_id}). */
+    data?: phenoml.tools.McpServerTool | undefined;
     /**
-     * MCP server tool data
+     * List of MCP server tools. Returned by
+     * /tools/mcp-server/{mcp_server_id}/list.
      */
-    interface Data {
-        /** ID of the MCP server tool */
-        id?: string | undefined;
-        /** Name of the MCP server tool */
-        name?: string | undefined;
-        /** Description of the MCP server tool */
-        description?: string | undefined;
-        /** Input schema of the MCP server tool */
-        input_schema?: Record<string, unknown> | undefined;
-        /** ID of the MCP server that the tool belongs to */
-        mcp_server_id?: string | undefined;
-        /** URL of the MCP server */
-        mcp_server_url?: string | undefined;
-    }
+    mcp_server_tools?: phenoml.tools.McpServerTool[] | undefined;
 }

package/dist/cjs/api/resources/tools/types/index.d.ts

@@ -2,7 +2,9 @@ export * from "./CohortResponse.js";
 export * from "./Lang2FhirAndCreateMultiResponse.js";
 export * from "./Lang2FhirAndCreateResponse.js";
 export * from "./Lang2FhirAndSearchResponse.js";
+export * from "./McpServer.js";
 export * from "./McpServerResponse.js";
+export * from "./McpServerTool.js";
 export * from "./McpServerToolCallResponse.js";
 export * from "./McpServerToolResponse.js";
 export * from "./SearchConcept.js";