phenoml 12.5.0 → 13.0.0

package/dist/cjs/BaseClient.js

@@ -43,8 +43,8 @@ function normalizeClientOptions(options) {
     const headers = (0, headers_js_1.mergeHeaders)({
         "X-Fern-Language": "JavaScript",
         "X-Fern-SDK-Name": "phenoml",
-        "X-Fern-SDK-Version": "12.5.0",
-        "User-Agent": "phenoml/12.5.0",
+        "X-Fern-SDK-Version": "13.0.0",
+        "User-Agent": "phenoml/13.0.0",
         "X-Fern-Runtime": core.RUNTIME.type,
         "X-Fern-Runtime-Version": core.RUNTIME.version,
     }, options === null || options === void 0 ? void 0 : options.headers);

package/dist/cjs/api/resources/lang2Fhir/client/Client.d.ts

@@ -11,7 +11,9 @@ export declare class Lang2FhirClient {
     protected readonly _options: NormalizedClientOptionsWithAuth<Lang2FhirClient.Options>;
     constructor(options?: Lang2FhirClient.Options);
     /**
-     * Converts natural language text into a structured FHIR resource
+     * Converts natural language text into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.CreateRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -34,6 +36,8 @@ export declare class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types from the text.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.CreateMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -101,7 +105,9 @@ export declare class Lang2FhirClient {
     uploadProfile(request: phenoml.lang2Fhir.ProfileUploadRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.Lang2FhirUploadProfileResponse>;
     private __uploadProfile;
     /**
-     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource
+     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.DocumentRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -125,6 +131,8 @@ export declare class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.DocumentMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -139,6 +147,6 @@ export declare class Lang2FhirClient {
      *         content: "content"
      *     })
      */
-    extractMultipleFhirResourcesFromADocument(request: phenoml.lang2Fhir.DocumentMultiRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.CreateMultiResponse>;
+    extractMultipleFhirResourcesFromADocument(request: phenoml.lang2Fhir.DocumentMultiRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.DocumentMultiResponse>;
     private __extractMultipleFhirResourcesFromADocument;
 }

package/dist/cjs/api/resources/lang2Fhir/client/Client.js

@@ -56,7 +56,9 @@ class Lang2FhirClient {
         this._options = (0, BaseClient_js_1.normalizeClientOptionsWithAuth)(options);
     }
     /**
-     * Converts natural language text into a structured FHIR resource
+     * Converts natural language text into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.CreateRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -121,6 +123,8 @@ class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types from the text.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.CreateMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -324,7 +328,9 @@ class Lang2FhirClient {
         });
     }
     /**
-     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource
+     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.DocumentRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -390,6 +396,8 @@ class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.DocumentMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *

package/dist/cjs/api/resources/lang2Fhir/client/requests/DocumentMultiRequest.d.ts

@@ -1,3 +1,4 @@
+import type * as phenoml from "../../../../index.js";
 /**
  * @example
  *     {
@@ -22,6 +23,7 @@ export interface DocumentMultiRequest {
     detection_effort?: DocumentMultiRequest.DetectionEffort;
     /** FHIR validation method to apply to the generated bundle. 'none' skips validation (default). 'check' runs the bundle through a FHIR structure validator and includes the results in the response. 'fix' runs validation and attempts to auto-correct errors using an LLM (up to 3 validation passes). The response includes results from each pass. Warning: 'fix' can significantly increase latency due to multiple LLM and validation round-trips. */
     validation_method?: DocumentMultiRequest.ValidationMethod;
+    config?: phenoml.lang2Fhir.DocumentConfig;
 }
 export declare namespace DocumentMultiRequest {
     /** Detection effort. 'standard' runs detection once, 'deep' runs detection multiple times for higher recall. */

package/dist/cjs/api/resources/lang2Fhir/client/requests/DocumentRequest.d.ts

@@ -1,3 +1,4 @@
+import type * as phenoml from "../../../../index.js";
 /**
  * @example
  *     {
@@ -17,4 +18,5 @@ export interface DocumentRequest {
      * File type is auto-detected from content magic bytes.
      */
     content: string;
+    config?: phenoml.lang2Fhir.DocumentConfig;
 }

package/dist/cjs/api/resources/lang2Fhir/types/CreateMultiResponse.d.ts

@@ -42,8 +42,10 @@ export declare namespace CreateMultiResponse {
             tempId?: string | undefined;
             /** FHIR resource type */
             resourceType?: string | undefined;
-            /** Text excerpt this resource was extracted from */
+            /** Context-enriched rewritten text excerpt for this resource */
             description?: string | undefined;
+            /** Verbatim text excerpt from the original clinical document */
+            originalText?: string | undefined;
         }
     }
     /**

package/dist/cjs/api/resources/lang2Fhir/types/DocumentConfig.d.ts

@@ -0,0 +1,7 @@
+import type * as phenoml from "../../../index.js";
+/**
+ * Optional processing configuration shared across document endpoints.
+ */
+export interface DocumentConfig {
+    page_filter?: phenoml.lang2Fhir.PageFilter | undefined;
+}

package/dist/cjs/api/resources/lang2Fhir/types/DocumentConfig.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/lang2Fhir/types/DocumentMultiResponse.d.ts

@@ -0,0 +1,5 @@
+import type * as phenoml from "../../../index.js";
+export interface DocumentMultiResponse extends phenoml.lang2Fhir.CreateMultiResponse {
+    /** Per-page classifier decisions. Populated only when a page_filter was supplied in the request. Contains one entry per input page, including both kept and dropped pages. */
+    page_classifications?: phenoml.lang2Fhir.PageClassification[] | undefined;
+}

package/dist/cjs/api/resources/lang2Fhir/types/DocumentMultiResponse.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/lang2Fhir/types/PageClassification.d.ts

@@ -0,0 +1,11 @@
+/**
+ * The classifier's decision for a single page of the input document.
+ */
+export interface PageClassification {
+    /** 1-indexed page number. */
+    page_number?: number | undefined;
+    /** Whether the page was kept (true) or dropped (false) from FHIR extraction. */
+    include?: boolean | undefined;
+    /** Short LLM-generated explanation of the decision. */
+    reason?: string | undefined;
+}

package/dist/cjs/api/resources/lang2Fhir/types/PageClassification.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/lang2Fhir/types/PageFilter.d.ts

@@ -0,0 +1,7 @@
+/**
+ * Configures per-page pre-extraction filtering. When set, each page of text extracted from the document is classified by an LLM, and pages classified as irrelevant to the supplied context are dropped before FHIR extraction.
+ */
+export interface PageFilter {
+    /** Natural-language description of what IS relevant to the extraction goal. Pages that do not match are dropped from downstream FHIR extraction. */
+    context: string;
+}

package/dist/cjs/api/resources/lang2Fhir/types/PageFilter.js

@@ -0,0 +1,3 @@
+"use strict";
+// This file was auto-generated by Fern from our API Definition.
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/api/resources/lang2Fhir/types/index.d.ts

@@ -1,4 +1,8 @@
 export * from "./CreateMultiResponse.js";
+export * from "./DocumentConfig.js";
+export * from "./DocumentMultiResponse.js";
 export * from "./FhirResource.js";
 export * from "./Lang2FhirUploadProfileResponse.js";
+export * from "./PageClassification.js";
+export * from "./PageFilter.js";
 export * from "./SearchResponse.js";

package/dist/cjs/api/resources/lang2Fhir/types/index.js

@@ -15,6 +15,10 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 __exportStar(require("./CreateMultiResponse.js"), exports);
+__exportStar(require("./DocumentConfig.js"), exports);
+__exportStar(require("./DocumentMultiResponse.js"), exports);
 __exportStar(require("./FhirResource.js"), exports);
 __exportStar(require("./Lang2FhirUploadProfileResponse.js"), exports);
+__exportStar(require("./PageClassification.js"), exports);
+__exportStar(require("./PageFilter.js"), exports);
 __exportStar(require("./SearchResponse.js"), exports);

package/dist/cjs/api/resources/tools/client/requests/Lang2FhirAndSearchRequest.d.ts

@@ -21,8 +21,6 @@ export interface Lang2FhirAndSearchRequest {
     text: string;
     /** Patient ID to filter results */
     patient_id?: string;
-    /** Practitioner ID to filter results */
-    practitioner_id?: string;
     /** Maximum number of results to return */
     count?: number;
     /** FHIR provider ID - must be a valid UUID from existing FHIR providers. also supports provider by name (e.g. medplum) */

package/dist/cjs/version.d.ts

@@ -1 +1 @@
-export declare const SDK_VERSION = "12.5.0";
+export declare const SDK_VERSION = "13.0.0";

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.SDK_VERSION = void 0;
-exports.SDK_VERSION = "12.5.0";
+exports.SDK_VERSION = "13.0.0";

package/dist/esm/BaseClient.mjs

@@ -6,8 +6,8 @@ export function normalizeClientOptions(options) {
     const headers = mergeHeaders({
         "X-Fern-Language": "JavaScript",
         "X-Fern-SDK-Name": "phenoml",
-        "X-Fern-SDK-Version": "12.5.0",
-        "User-Agent": "phenoml/12.5.0",
+        "X-Fern-SDK-Version": "13.0.0",
+        "User-Agent": "phenoml/13.0.0",
         "X-Fern-Runtime": core.RUNTIME.type,
         "X-Fern-Runtime-Version": core.RUNTIME.version,
     }, options === null || options === void 0 ? void 0 : options.headers);

package/dist/esm/api/resources/lang2Fhir/client/Client.d.mts

@@ -11,7 +11,9 @@ export declare class Lang2FhirClient {
     protected readonly _options: NormalizedClientOptionsWithAuth<Lang2FhirClient.Options>;
     constructor(options?: Lang2FhirClient.Options);
     /**
-     * Converts natural language text into a structured FHIR resource
+     * Converts natural language text into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.CreateRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -34,6 +36,8 @@ export declare class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types from the text.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.CreateMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -101,7 +105,9 @@ export declare class Lang2FhirClient {
     uploadProfile(request: phenoml.lang2Fhir.ProfileUploadRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.Lang2FhirUploadProfileResponse>;
     private __uploadProfile;
     /**
-     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource
+     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.DocumentRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -125,6 +131,8 @@ export declare class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.DocumentMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -139,6 +147,6 @@ export declare class Lang2FhirClient {
      *         content: "content"
      *     })
      */
-    extractMultipleFhirResourcesFromADocument(request: phenoml.lang2Fhir.DocumentMultiRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.CreateMultiResponse>;
+    extractMultipleFhirResourcesFromADocument(request: phenoml.lang2Fhir.DocumentMultiRequest, requestOptions?: Lang2FhirClient.RequestOptions): core.HttpResponsePromise<phenoml.lang2Fhir.DocumentMultiResponse>;
     private __extractMultipleFhirResourcesFromADocument;
 }

package/dist/esm/api/resources/lang2Fhir/client/Client.mjs

@@ -20,7 +20,9 @@ export class Lang2FhirClient {
         this._options = normalizeClientOptionsWithAuth(options);
     }
     /**
-     * Converts natural language text into a structured FHIR resource
+     * Converts natural language text into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.CreateRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -85,6 +87,8 @@ export class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types from the text.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.CreateMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *
@@ -288,7 +292,9 @@ export class Lang2FhirClient {
         });
     }
     /**
-     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource
+     * Extracts text from a document (PDF or image) and converts it into a structured FHIR resource.
+     *
+     * **Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
      *
      * @param {phenoml.lang2Fhir.DocumentRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
@@ -354,6 +360,8 @@ export class Lang2FhirClient {
      * Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types.
      * Resources are linked with proper references (e.g., Conditions reference the Patient).
      *
+     * **Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
+     *
      * @param {phenoml.lang2Fhir.DocumentMultiRequest} request
      * @param {Lang2FhirClient.RequestOptions} requestOptions - Request-specific configuration.
      *

package/dist/esm/api/resources/lang2Fhir/client/requests/DocumentMultiRequest.d.mts

@@ -1,3 +1,4 @@
+import type * as phenoml from "../../../../index.mjs";
 /**
  * @example
  *     {
@@ -22,6 +23,7 @@ export interface DocumentMultiRequest {
     detection_effort?: DocumentMultiRequest.DetectionEffort;
     /** FHIR validation method to apply to the generated bundle. 'none' skips validation (default). 'check' runs the bundle through a FHIR structure validator and includes the results in the response. 'fix' runs validation and attempts to auto-correct errors using an LLM (up to 3 validation passes). The response includes results from each pass. Warning: 'fix' can significantly increase latency due to multiple LLM and validation round-trips. */
     validation_method?: DocumentMultiRequest.ValidationMethod;
+    config?: phenoml.lang2Fhir.DocumentConfig;
 }
 export declare namespace DocumentMultiRequest {
     /** Detection effort. 'standard' runs detection once, 'deep' runs detection multiple times for higher recall. */

package/dist/esm/api/resources/lang2Fhir/client/requests/DocumentRequest.d.mts

@@ -1,3 +1,4 @@
+import type * as phenoml from "../../../../index.mjs";
 /**
  * @example
  *     {
@@ -17,4 +18,5 @@ export interface DocumentRequest {
      * File type is auto-detected from content magic bytes.
      */
     content: string;
+    config?: phenoml.lang2Fhir.DocumentConfig;
 }

package/dist/esm/api/resources/lang2Fhir/types/CreateMultiResponse.d.mts

@@ -42,8 +42,10 @@ export declare namespace CreateMultiResponse {
             tempId?: string | undefined;
             /** FHIR resource type */
             resourceType?: string | undefined;
-            /** Text excerpt this resource was extracted from */
+            /** Context-enriched rewritten text excerpt for this resource */
             description?: string | undefined;
+            /** Verbatim text excerpt from the original clinical document */
+            originalText?: string | undefined;
         }
     }
     /**

package/dist/esm/api/resources/lang2Fhir/types/DocumentConfig.d.mts

@@ -0,0 +1,7 @@
+import type * as phenoml from "../../../index.mjs";
+/**
+ * Optional processing configuration shared across document endpoints.
+ */
+export interface DocumentConfig {
+    page_filter?: phenoml.lang2Fhir.PageFilter | undefined;
+}

package/dist/esm/api/resources/lang2Fhir/types/DocumentConfig.mjs

@@ -0,0 +1,2 @@
+// This file was auto-generated by Fern from our API Definition.
+export {};

package/dist/esm/api/resources/lang2Fhir/types/DocumentMultiResponse.d.mts

@@ -0,0 +1,5 @@
+import type * as phenoml from "../../../index.mjs";
+export interface DocumentMultiResponse extends phenoml.lang2Fhir.CreateMultiResponse {
+    /** Per-page classifier decisions. Populated only when a page_filter was supplied in the request. Contains one entry per input page, including both kept and dropped pages. */
+    page_classifications?: phenoml.lang2Fhir.PageClassification[] | undefined;
+}

package/dist/esm/api/resources/lang2Fhir/types/DocumentMultiResponse.mjs

@@ -0,0 +1,2 @@
+// This file was auto-generated by Fern from our API Definition.
+export {};

package/dist/esm/api/resources/lang2Fhir/types/PageClassification.d.mts

@@ -0,0 +1,11 @@
+/**
+ * The classifier's decision for a single page of the input document.
+ */
+export interface PageClassification {
+    /** 1-indexed page number. */
+    page_number?: number | undefined;
+    /** Whether the page was kept (true) or dropped (false) from FHIR extraction. */
+    include?: boolean | undefined;
+    /** Short LLM-generated explanation of the decision. */
+    reason?: string | undefined;
+}

package/dist/esm/api/resources/lang2Fhir/types/PageClassification.mjs

@@ -0,0 +1,2 @@
+// This file was auto-generated by Fern from our API Definition.
+export {};

package/dist/esm/api/resources/lang2Fhir/types/PageFilter.d.mts

@@ -0,0 +1,7 @@
+/**
+ * Configures per-page pre-extraction filtering. When set, each page of text extracted from the document is classified by an LLM, and pages classified as irrelevant to the supplied context are dropped before FHIR extraction.
+ */
+export interface PageFilter {
+    /** Natural-language description of what IS relevant to the extraction goal. Pages that do not match are dropped from downstream FHIR extraction. */
+    context: string;
+}

package/dist/esm/api/resources/lang2Fhir/types/PageFilter.mjs

@@ -0,0 +1,2 @@
+// This file was auto-generated by Fern from our API Definition.
+export {};

package/dist/esm/api/resources/lang2Fhir/types/index.d.mts

@@ -1,4 +1,8 @@
 export * from "./CreateMultiResponse.mjs";
+export * from "./DocumentConfig.mjs";
+export * from "./DocumentMultiResponse.mjs";
 export * from "./FhirResource.mjs";
 export * from "./Lang2FhirUploadProfileResponse.mjs";
+export * from "./PageClassification.mjs";
+export * from "./PageFilter.mjs";
 export * from "./SearchResponse.mjs";

package/dist/esm/api/resources/lang2Fhir/types/index.mjs

@@ -1,4 +1,8 @@
 export * from "./CreateMultiResponse.mjs";
+export * from "./DocumentConfig.mjs";
+export * from "./DocumentMultiResponse.mjs";
 export * from "./FhirResource.mjs";
 export * from "./Lang2FhirUploadProfileResponse.mjs";
+export * from "./PageClassification.mjs";
+export * from "./PageFilter.mjs";
 export * from "./SearchResponse.mjs";

package/dist/esm/api/resources/tools/client/requests/Lang2FhirAndSearchRequest.d.mts

@@ -21,8 +21,6 @@ export interface Lang2FhirAndSearchRequest {
     text: string;
     /** Patient ID to filter results */
     patient_id?: string;
-    /** Practitioner ID to filter results */
-    practitioner_id?: string;
     /** Maximum number of results to return */
     count?: number;
     /** FHIR provider ID - must be a valid UUID from existing FHIR providers. also supports provider by name (e.g. medplum) */

package/dist/esm/version.d.mts

@@ -1 +1 @@
-export declare const SDK_VERSION = "12.5.0";
+export declare const SDK_VERSION = "13.0.0";

package/dist/esm/version.mjs

@@ -1 +1 @@
-export const SDK_VERSION = "12.5.0";
+export const SDK_VERSION = "13.0.0";

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "phenoml",
-    "version": "12.5.0",
+    "version": "13.0.0",
     "private": false,
     "repository": {
         "type": "git",

package/reference.md

@@ -3171,7 +3171,9 @@ await client.fhirProvider.removeAuthConfig("1716d214-de93-43a4-aa6b-a878d864e2ad
 <dl>
 <dd>
 
-Converts natural language text into a structured FHIR resource
+Converts natural language text into a structured FHIR resource.
+
+**Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
 </dd>
 </dl>
 </dd>
@@ -3241,6 +3243,8 @@ await client.lang2Fhir.create({
 Analyzes natural language text and extracts multiple FHIR resources, returning them as a transaction Bundle.
 Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types from the text.
 Resources are linked with proper references (e.g., Conditions reference the Patient).
+
+**Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
 </dd>
 </dl>
 </dd>
@@ -3451,7 +3455,9 @@ await client.lang2Fhir.uploadProfile({
 <dl>
 <dd>
 
-Extracts text from a document (PDF or image) and converts it into a structured FHIR resource
+Extracts text from a document (PDF or image) and converts it into a structured FHIR resource.
+
+**Patient identifier handling.** When generating a `patient` (or `patient-canvas`) resource, US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the resource remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
 </dd>
 </dl>
 </dd>
@@ -3506,7 +3512,7 @@ await client.lang2Fhir.document({
 </dl>
 </details>
 
-<details><summary><code>client.lang2Fhir.<a href="/src/api/resources/lang2Fhir/client/Client.ts">extractMultipleFhirResourcesFromADocument</a>({ ...params }) -> phenoml.CreateMultiResponse</code></summary>
+<details><summary><code>client.lang2Fhir.<a href="/src/api/resources/lang2Fhir/client/Client.ts">extractMultipleFhirResourcesFromADocument</a>({ ...params }) -> phenoml.DocumentMultiResponse</code></summary>
 <dl>
 <dd>
 
@@ -3522,6 +3528,8 @@ Extracts text from a document (PDF or image) and converts it into multiple FHIR
 returned as a transaction Bundle. Combines document text extraction with multi-resource detection.
 Automatically detects Patient, Condition, MedicationRequest, Observation, and other resource types.
 Resources are linked with proper references (e.g., Conditions reference the Patient).
+
+**Patient identifier handling.** US Core requires `Patient.identifier` (a business identifier such as an MRN). When the source text contains an identifier, it is extracted with an appropriate URI system. When the source text does not contain a detectable identifier, a synthetic one is generated with `system: "urn:phenoml:lang2fhir-generated-id"` and a UUID `value` so the bundle remains FHIR-valid and US Core conformant. Callers who need a tenant-specific namespace should rewrite the synthetic system after extraction.
 </dd>
 </dl>
 </dd>