phenoml 0.0.7 → 0.0.9

package/dist/cjs/api/resources/tools/client/Client.js

@@ -42,16 +42,27 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
         step((generator = generator.apply(thisArg, _arguments || [])).next());
     });
 };
+var __rest = (this && this.__rest) || function (s, e) {
+    var t = {};
+    for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p) && e.indexOf(p) < 0)
+        t[p] = s[p];
+    if (s != null && typeof Object.getOwnPropertySymbols === "function")
+        for (var i = 0, p = Object.getOwnPropertySymbols(s); i < p.length; i++) {
+            if (e.indexOf(p[i]) < 0 && Object.prototype.propertyIsEnumerable.call(s, p[i]))
+                t[p[i]] = s[p[i]];
+        }
+    return t;
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Tools = void 0;
-const environments = __importStar(require("../../../../environments.js"));
-const core = __importStar(require("../../../../core/index.js"));
-const phenoml = __importStar(require("../../../index.js"));
 const headers_js_1 = require("../../../../core/headers.js");
+const core = __importStar(require("../../../../core/index.js"));
+const environments = __importStar(require("../../../../environments.js"));
 const errors = __importStar(require("../../../../errors/index.js"));
+const phenoml = __importStar(require("../../../index.js"));
 const Client_js_1 = require("../resources/mcpServer/client/Client.js");
 class Tools {
-    constructor(_options = {}) {
+    constructor(_options) {
         this._options = _options;
     }
     get mcpServer() {
@@ -72,6 +83,8 @@ class Tools {
      *
      * @example
      *     await client.tools.createFhirResource({
+     *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
+     *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
      *         resource: "auto",
      *         text: "Patient John Doe has severe asthma with acute exacerbation"
      *     })
@@ -82,7 +95,12 @@ class Tools {
     __createFhirResource(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
+                Authorization: yield this._getAuthorizationHeader(),
+                "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf != null ? phenomlOnBehalfOf : undefined,
+                "X-Phenoml-Fhir-Provider": phenomlFhirProvider != null ? phenomlFhirProvider : undefined,
+            }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/lang2fhir-and-create"),
                 method: "POST",
@@ -90,7 +108,7 @@ class Tools {
                 contentType: "application/json",
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
-                body: request,
+                body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -152,6 +170,8 @@ class Tools {
      *
      * @example
      *     await client.tools.searchFhirResources({
+     *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
+     *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
      *         text: "Find all appointments for patient John Doe next week"
      *     })
      */
@@ -161,7 +181,12 @@ class Tools {
     __searchFhirResources(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
+                Authorization: yield this._getAuthorizationHeader(),
+                "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf != null ? phenomlOnBehalfOf : undefined,
+                "X-Phenoml-Fhir-Provider": phenomlFhirProvider != null ? phenomlFhirProvider : undefined,
+            }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/lang2fhir-and-search"),
                 method: "POST",
@@ -169,7 +194,7 @@ class Tools {
                 contentType: "application/json",
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
-                body: request,
+                body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -230,6 +255,8 @@ class Tools {
      *
      * @example
      *     await client.tools.analyzeCohort({
+     *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
+     *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
      *         text: "female patients over 20 with diabetes but not hypertension",
      *         provider: "550e8400-e29b-41d4-a716-446655440000"
      *     })
@@ -240,7 +267,12 @@ class Tools {
     __analyzeCohort(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const { "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf, "X-Phenoml-Fhir-Provider": phenomlFhirProvider } = request, _body = __rest(request, ["X-Phenoml-On-Behalf-Of", "X-Phenoml-Fhir-Provider"]);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({
+                Authorization: yield this._getAuthorizationHeader(),
+                "X-Phenoml-On-Behalf-Of": phenomlOnBehalfOf != null ? phenomlOnBehalfOf : undefined,
+                "X-Phenoml-Fhir-Provider": phenomlFhirProvider != null ? phenomlFhirProvider : undefined,
+            }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/cohort"),
                 method: "POST",
@@ -248,7 +280,7 @@ class Tools {
                 contentType: "application/json",
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
                 requestType: "json",
-                body: request,
+                body: _body,
                 timeoutMs: ((_g = (_e = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.timeoutInSeconds) !== null && _e !== void 0 ? _e : (_f = this._options) === null || _f === void 0 ? void 0 : _f.timeoutInSeconds) !== null && _g !== void 0 ? _g : 60) * 1000,
                 maxRetries: (_h = requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.maxRetries) !== null && _h !== void 0 ? _h : (_j = this._options) === null || _j === void 0 ? void 0 : _j.maxRetries,
                 abortSignal: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.abortSignal,
@@ -293,11 +325,7 @@ class Tools {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            const bearer = yield core.Supplier.get(this._options.token);
-            if (bearer != null) {
-                return `Bearer ${bearer}`;
-            }
-            return undefined;
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
         });
     }
 }

package/dist/cjs/api/resources/tools/client/index.d.ts

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.js";

package/dist/cjs/api/resources/tools/client/requests/CohortRequest.d.ts

@@ -1,11 +1,23 @@
 /**
  * @example
  *     {
+ *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
+ *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
  *         text: "female patients over 20 with diabetes but not hypertension",
  *         provider: "550e8400-e29b-41d4-a716-446655440000"
  *     }
  */
 export interface CohortRequest {
+    /**
+     * Optional header for on-behalf-of authentication. Used when making requests on behalf of another user or entity.
+     * Must be in the format: Patient/{uuid} or Practitioner/{uuid}
+     */
+    "X-Phenoml-On-Behalf-Of"?: string;
+    /**
+     * Optional header for FHIR provider authentication. Contains credentials in the format {fhir_provider_id}:{oauth2_token}.
+     * Multiple FHIR provider integrations can be provided as comma-separated values.
+     */
+    "X-Phenoml-Fhir-Provider"?: string;
     /** Natural language text describing the patient cohort criteria */
     text: string;
     /** FHIR provider ID - must be a valid UUID from existing FHIR providers. also supports provider by name (e.g. medplum) */

package/dist/cjs/api/resources/tools/client/requests/Lang2FhirAndCreateRequest.d.ts

@@ -1,11 +1,23 @@
 /**
  * @example
  *     {
+ *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
+ *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
  *         resource: "auto",
  *         text: "Patient John Doe has severe asthma with acute exacerbation"
  *     }
  */
 export interface Lang2FhirAndCreateRequest {
+    /**
+     * Optional header for on-behalf-of authentication. Used when making requests on behalf of another user or entity.
+     * Must be in the format: Patient/{uuid} or Practitioner/{uuid}
+     */
+    "X-Phenoml-On-Behalf-Of"?: string;
+    /**
+     * Optional header for FHIR provider authentication. Contains credentials in the format {fhir_provider_id}:{oauth2_token}.
+     * Multiple FHIR provider integrations can be provided as comma-separated values.
+     */
+    "X-Phenoml-Fhir-Provider"?: string;
     /** Type of FHIR resource to create. Use 'auto' for automatic resource type detection, or specify a supported US Core profile. */
     resource: Lang2FhirAndCreateRequest.Resource;
     /** Natural language text to convert to FHIR resource */

package/dist/cjs/api/resources/tools/client/requests/Lang2FhirAndSearchRequest.d.ts

@@ -1,10 +1,22 @@
 /**
  * @example
  *     {
+ *         "X-Phenoml-On-Behalf-Of": "Patient/550e8400-e29b-41d4-a716-446655440000",
+ *         "X-Phenoml-Fhir-Provider": "550e8400-e29b-41d4-a716-446655440000:eyJhbGciOiJSUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiIxMjM0NTY3ODkwIiwibmFtZSI6IkpvaG4gRG9lIiwiaWF0IjoxNTE2MjM5MDIyfQ.SflKxwRJSMeKKF2QT4fwpMeJf36POk6yJV_adQssw5c...",
  *         text: "Find all appointments for patient John Doe next week"
  *     }
  */
 export interface Lang2FhirAndSearchRequest {
+    /**
+     * Optional header for on-behalf-of authentication. Used when making requests on behalf of another user or entity.
+     * Must be in the format: Patient/{uuid} or Practitioner/{uuid}
+     */
+    "X-Phenoml-On-Behalf-Of"?: string;
+    /**
+     * Optional header for FHIR provider authentication. Contains credentials in the format {fhir_provider_id}:{oauth2_token}.
+     * Multiple FHIR provider integrations can be provided as comma-separated values.
+     */
+    "X-Phenoml-Fhir-Provider"?: string;
     /** Natural language text to convert to FHIR search parameters */
     text: string;
     /** Patient ID to filter results */

package/dist/cjs/api/resources/tools/client/requests/index.d.ts

@@ -1,3 +1,3 @@
-export { type Lang2FhirAndCreateRequest } from "./Lang2FhirAndCreateRequest.js";
-export { type Lang2FhirAndSearchRequest } from "./Lang2FhirAndSearchRequest.js";
-export { type CohortRequest } from "./CohortRequest.js";
+export type { CohortRequest } from "./CohortRequest.js";
+export type { Lang2FhirAndCreateRequest } from "./Lang2FhirAndCreateRequest.js";
+export type { Lang2FhirAndSearchRequest } from "./Lang2FhirAndSearchRequest.js";

package/dist/cjs/api/resources/tools/errors/BadRequestError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class BadRequestError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/tools/errors/FailedDependencyError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class FailedDependencyError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/tools/errors/ForbiddenError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class ForbiddenError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/tools/errors/InternalServerError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class InternalServerError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/tools/errors/UnauthorizedError.d.ts

@@ -1,5 +1,5 @@
+import type * as core from "../../../../core/index.js";
 import * as errors from "../../../../errors/index.js";
-import * as core from "../../../../core/index.js";
 export declare class UnauthorizedError extends errors.phenomlError {
     constructor(body?: unknown, rawResponse?: core.RawResponse);
 }

package/dist/cjs/api/resources/tools/errors/index.d.ts

@@ -1,5 +1,5 @@
 export * from "./BadRequestError.js";
-export * from "./UnauthorizedError.js";
-export * from "./ForbiddenError.js";
 export * from "./FailedDependencyError.js";
+export * from "./ForbiddenError.js";
 export * from "./InternalServerError.js";
+export * from "./UnauthorizedError.js";

package/dist/cjs/api/resources/tools/errors/index.js

@@ -15,7 +15,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 __exportStar(require("./BadRequestError.js"), exports);
-__exportStar(require("./UnauthorizedError.js"), exports);
-__exportStar(require("./ForbiddenError.js"), exports);
 __exportStar(require("./FailedDependencyError.js"), exports);
+__exportStar(require("./ForbiddenError.js"), exports);
 __exportStar(require("./InternalServerError.js"), exports);
+__exportStar(require("./UnauthorizedError.js"), exports);

package/dist/cjs/api/resources/tools/index.d.ts

@@ -1,4 +1,4 @@
-export * from "./types/index.js";
-export * from "./errors/index.js";
 export * from "./client/index.js";
+export * from "./errors/index.js";
 export * from "./resources/index.js";
+export * from "./types/index.js";

package/dist/cjs/api/resources/tools/index.js

@@ -14,7 +14,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-__exportStar(require("./types/index.js"), exports);
-__exportStar(require("./errors/index.js"), exports);
 __exportStar(require("./client/index.js"), exports);
+__exportStar(require("./errors/index.js"), exports);
 __exportStar(require("./resources/index.js"), exports);
+__exportStar(require("./types/index.js"), exports);

package/dist/cjs/api/resources/tools/resources/index.d.ts

@@ -1,2 +1,2 @@
-export * as mcpServer from "./mcpServer/index.js";
 export * from "./mcpServer/client/requests/index.js";
+export * as mcpServer from "./mcpServer/index.js";

package/dist/cjs/api/resources/tools/resources/index.js

@@ -15,6 +15,9 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
 var __importStar = (this && this.__importStar) || (function () {
     var ownKeys = function(o) {
         ownKeys = Object.getOwnPropertyNames || function (o) {
@@ -32,10 +35,7 @@ var __importStar = (this && this.__importStar) || (function () {
         return result;
     };
 })();
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.mcpServer = void 0;
-exports.mcpServer = __importStar(require("./mcpServer/index.js"));
 __exportStar(require("./mcpServer/client/requests/index.js"), exports);
+exports.mcpServer = __importStar(require("./mcpServer/index.js"));

package/dist/cjs/api/resources/tools/resources/mcpServer/client/Client.d.ts

@@ -11,7 +11,7 @@ export declare namespace McpServer {
 export declare class McpServer {
     protected readonly _options: McpServer.Options;
     protected _tools: Tools | undefined;
-    constructor(_options?: McpServer.Options);
+    constructor(_options: McpServer.Options);
     get tools(): Tools;
     /**
      * Creates a new MCP server
@@ -76,5 +76,5 @@ export declare class McpServer {
      */
     delete(mcpServerId: string, requestOptions?: McpServer.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerResponse>;
     private __delete;
-    protected _getAuthorizationHeader(): Promise<string | undefined>;
+    protected _getAuthorizationHeader(): Promise<string>;
 }

package/dist/cjs/api/resources/tools/resources/mcpServer/client/Client.js

@@ -44,14 +44,14 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.McpServer = void 0;
-const environments = __importStar(require("../../../../../../environments.js"));
-const core = __importStar(require("../../../../../../core/index.js"));
-const phenoml = __importStar(require("../../../../../index.js"));
 const headers_js_1 = require("../../../../../../core/headers.js");
+const core = __importStar(require("../../../../../../core/index.js"));
+const environments = __importStar(require("../../../../../../environments.js"));
 const errors = __importStar(require("../../../../../../errors/index.js"));
+const phenoml = __importStar(require("../../../../../index.js"));
 const Client_js_1 = require("../resources/tools/client/Client.js");
 class McpServer {
-    constructor(_options = {}) {
+    constructor(_options) {
         this._options = _options;
     }
     get tools() {
@@ -81,7 +81,7 @@ class McpServer {
     __create(request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/mcp-server/create"),
                 method: "POST",
@@ -150,7 +150,7 @@ class McpServer {
     __list(requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
                 url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, "tools/mcp-server/list"),
                 method: "GET",
@@ -215,9 +215,9 @@ class McpServer {
     __get(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${encodeURIComponent(mcpServerId)}`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}`),
                 method: "GET",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -280,9 +280,9 @@ class McpServer {
     __delete(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${encodeURIComponent(mcpServerId)}`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}`),
                 method: "DELETE",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -328,11 +328,7 @@ class McpServer {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            const bearer = yield core.Supplier.get(this._options.token);
-            if (bearer != null) {
-                return `Bearer ${bearer}`;
-            }
-            return undefined;
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
         });
     }
 }

package/dist/cjs/api/resources/tools/resources/mcpServer/client/index.d.ts

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.js";

package/dist/cjs/api/resources/tools/resources/mcpServer/client/requests/index.d.ts

@@ -1 +1 @@
-export { type McpServerCreateRequest } from "./McpServerCreateRequest.js";
+export type { McpServerCreateRequest } from "./McpServerCreateRequest.js";

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/index.d.ts

@@ -1,2 +1,2 @@
-export * as tools from "./tools/index.js";
 export * from "./tools/client/requests/index.js";
+export * as tools from "./tools/index.js";

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/index.js

@@ -15,6 +15,9 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
 var __importStar = (this && this.__importStar) || (function () {
     var ownKeys = function(o) {
         ownKeys = Object.getOwnPropertyNames || function (o) {
@@ -32,10 +35,7 @@ var __importStar = (this && this.__importStar) || (function () {
         return result;
     };
 })();
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.tools = void 0;
-exports.tools = __importStar(require("./tools/index.js"));
 __exportStar(require("./tools/client/requests/index.js"), exports);
+exports.tools = __importStar(require("./tools/index.js"));

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/Client.d.ts

@@ -9,7 +9,7 @@ export declare namespace Tools {
 }
 export declare class Tools {
     protected readonly _options: Tools.Options;
-    constructor(_options?: Tools.Options);
+    constructor(_options: Tools.Options);
     /**
      * Lists all MCP server tools for a specific MCP server
      *
@@ -76,5 +76,5 @@ export declare class Tools {
      */
     call(mcpServerToolId: string, request: phenoml.tools.mcpServer.McpServerToolCallRequest, requestOptions?: Tools.RequestOptions): core.HttpResponsePromise<phenoml.tools.McpServerToolCallResponse>;
     private __call;
-    protected _getAuthorizationHeader(): Promise<string | undefined>;
+    protected _getAuthorizationHeader(): Promise<string>;
 }

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/Client.js

@@ -44,13 +44,13 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Tools = void 0;
-const environments = __importStar(require("../../../../../../../../environments.js"));
-const core = __importStar(require("../../../../../../../../core/index.js"));
-const phenoml = __importStar(require("../../../../../../../index.js"));
 const headers_js_1 = require("../../../../../../../../core/headers.js");
+const core = __importStar(require("../../../../../../../../core/index.js"));
+const environments = __importStar(require("../../../../../../../../environments.js"));
 const errors = __importStar(require("../../../../../../../../errors/index.js"));
+const phenoml = __importStar(require("../../../../../../../index.js"));
 class Tools {
-    constructor(_options = {}) {
+    constructor(_options) {
         this._options = _options;
     }
     /**
@@ -72,9 +72,9 @@ class Tools {
     __list(mcpServerId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${encodeURIComponent(mcpServerId)}/list`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/${core.url.encodePathParam(mcpServerId)}/list`),
                 method: "GET",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -137,9 +137,9 @@ class Tools {
     __get(mcpServerToolId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${encodeURIComponent(mcpServerToolId)}`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}`),
                 method: "GET",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -202,9 +202,9 @@ class Tools {
     __delete(mcpServerToolId, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${encodeURIComponent(mcpServerToolId)}`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}`),
                 method: "DELETE",
                 headers: _headers,
                 queryParameters: requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.queryParams,
@@ -273,9 +273,9 @@ class Tools {
     __call(mcpServerToolId, request, requestOptions) {
         return __awaiter(this, void 0, void 0, function* () {
             var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
+            const _headers = (0, headers_js_1.mergeHeaders)((_a = this._options) === null || _a === void 0 ? void 0 : _a.headers, (0, headers_js_1.mergeOnlyDefinedHeaders)({ Authorization: yield this._getAuthorizationHeader() }), requestOptions === null || requestOptions === void 0 ? void 0 : requestOptions.headers);
             const _response = yield ((_b = this._options.fetcher) !== null && _b !== void 0 ? _b : core.fetcher)({
-                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${encodeURIComponent(mcpServerToolId)}/call`),
+                url: core.url.join((_d = (_c = (yield core.Supplier.get(this._options.baseUrl))) !== null && _c !== void 0 ? _c : (yield core.Supplier.get(this._options.environment))) !== null && _d !== void 0 ? _d : environments.phenomlEnvironment.Default, `tools/mcp-server/tool/${core.url.encodePathParam(mcpServerToolId)}/call`),
                 method: "POST",
                 headers: _headers,
                 contentType: "application/json",
@@ -329,11 +329,7 @@ class Tools {
     }
     _getAuthorizationHeader() {
         return __awaiter(this, void 0, void 0, function* () {
-            const bearer = yield core.Supplier.get(this._options.token);
-            if (bearer != null) {
-                return `Bearer ${bearer}`;
-            }
-            return undefined;
+            return `Bearer ${yield core.Supplier.get(this._options.token)}`;
         });
     }
 }

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/index.d.ts

@@ -1,2 +1 @@
-export {};
 export * from "./requests/index.js";

package/dist/cjs/api/resources/tools/resources/mcpServer/resources/tools/client/requests/index.d.ts

@@ -1 +1 @@
-export { type McpServerToolCallRequest } from "./McpServerToolCallRequest.js";
+export type { McpServerToolCallRequest } from "./McpServerToolCallRequest.js";

package/dist/cjs/api/resources/tools/types/CohortResponse.d.ts

@@ -1,4 +1,4 @@
-import * as phenoml from "../../../index.js";
+import type * as phenoml from "../../../index.js";
 export interface CohortResponse {
     /** Whether the cohort analysis was successful */
     success?: boolean;

package/dist/cjs/api/resources/tools/types/index.d.ts

@@ -1,6 +1,6 @@
+export * from "./CohortResponse.js";
 export * from "./Lang2FhirAndCreateResponse.js";
 export * from "./Lang2FhirAndSearchResponse.js";
-export * from "./CohortResponse.js";
 export * from "./McpServerResponse.js";
 export * from "./McpServerToolCallResponse.js";
 export * from "./McpServerToolResponse.js";

package/dist/cjs/api/resources/tools/types/index.js

@@ -14,9 +14,9 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./CohortResponse.js"), exports);
 __exportStar(require("./Lang2FhirAndCreateResponse.js"), exports);
 __exportStar(require("./Lang2FhirAndSearchResponse.js"), exports);
-__exportStar(require("./CohortResponse.js"), exports);
 __exportStar(require("./McpServerResponse.js"), exports);
 __exportStar(require("./McpServerToolCallResponse.js"), exports);
 __exportStar(require("./McpServerToolResponse.js"), exports);