phenoml 0.0.4 → 0.0.6

package/dist/cjs/api/types/index.js

@@ -0,0 +1,23 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __exportStar = (this && this.__exportStar) || function(m, exports) {
+    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+__exportStar(require("./Lang2FhirAndCreateResponse.js"), exports);
+__exportStar(require("./Lang2FhirAndSearchResponse.js"), exports);
+__exportStar(require("./CohortResponse.js"), exports);
+__exportStar(require("./McpServerResponse.js"), exports);
+__exportStar(require("./McpServerToolCallResponse.js"), exports);
+__exportStar(require("./McpServerToolResponse.js"), exports);
+__exportStar(require("./SearchConcept.js"), exports);

package/dist/cjs/core/auth/AuthProvider.d.ts

@@ -1,4 +1,4 @@
-import { AuthRequest } from "./AuthRequest.js";
+import type { AuthRequest } from "./AuthRequest.js";
 export interface AuthProvider {
     getAuthRequest(): Promise<AuthRequest>;
 }

package/dist/cjs/core/auth/BasicAuth.js

@@ -14,7 +14,8 @@ exports.BasicAuth = {
     fromAuthorizationHeader: (header) => {
         const credentials = header.replace(BASIC_AUTH_HEADER_PREFIX, "");
         const decoded = (0, base64_js_1.base64Decode)(credentials);
-        const [username, password] = decoded.split(":", 2);
+        const [username, ...passwordParts] = decoded.split(":");
+        const password = passwordParts.length > 0 ? passwordParts.join(":") : undefined;
         if (username == null || password == null) {
             throw new Error("Invalid basic auth");
         }

package/dist/cjs/core/auth/index.d.ts

@@ -1,4 +1,4 @@
-export { AuthProvider } from "./AuthProvider.js";
-export { type AuthRequest } from "./AuthRequest.js";
+export type { AuthProvider } from "./AuthProvider.js";
+export type { AuthRequest } from "./AuthRequest.js";
 export { BasicAuth } from "./BasicAuth.js";
 export { BearerToken } from "./BearerToken.js";

package/dist/cjs/core/fetcher/APIResponse.d.ts

@@ -1,4 +1,4 @@
-import { RawResponse } from "./RawResponse.js";
+import type { RawResponse } from "./RawResponse.js";
 /**
  * The response of an API call.
  * It is a successful response or a failed response.

package/dist/cjs/core/fetcher/BinaryResponse.d.ts

@@ -1,4 +1,4 @@
-import { ResponseWithBody } from "./ResponseWithBody.js";
+import type { ResponseWithBody } from "./ResponseWithBody.js";
 export type BinaryResponse = {
     /** [MDN Reference](https://developer.mozilla.org/docs/Web/API/Request/bodyUsed) */
     bodyUsed: boolean;

package/dist/cjs/core/fetcher/EndpointMetadata.d.ts

@@ -0,0 +1,13 @@
+export type SecuritySchemeKey = string;
+/**
+ * A collection of security schemes, where the key is the name of the security scheme and the value is the list of scopes required for that scheme.
+ * All schemes in the collection must be satisfied for authentication to be successful.
+ */
+export type SecuritySchemeCollection = Record<SecuritySchemeKey, AuthScope[]>;
+export type AuthScope = string;
+export type EndpointMetadata = {
+    /**
+     * An array of security scheme collections. Each collection represents an alternative way to authenticate.
+     */
+    security?: SecuritySchemeCollection[];
+};

package/dist/cjs/core/fetcher/EndpointMetadata.js

@@ -0,0 +1,2 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });

package/dist/cjs/core/fetcher/EndpointSupplier.d.ts

@@ -0,0 +1,12 @@
+import type { EndpointMetadata } from "./EndpointMetadata.js";
+import { Supplier } from "./Supplier.js";
+type EndpointSupplierFn<T> = (arg: {
+    endpointMetadata: EndpointMetadata;
+}) => T | Promise<T>;
+export type EndpointSupplier<T> = Supplier<T> | EndpointSupplierFn<T>;
+export declare const EndpointSupplier: {
+    get: <T>(supplier: EndpointSupplier<T>, arg: {
+        endpointMetadata: EndpointMetadata;
+    }) => Promise<T>;
+};
+export {};

package/dist/cjs/core/fetcher/EndpointSupplier.js

@@ -0,0 +1,22 @@
+"use strict";
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.EndpointSupplier = void 0;
+exports.EndpointSupplier = {
+    get: (supplier, arg) => __awaiter(void 0, void 0, void 0, function* () {
+        if (typeof supplier === "function") {
+            return supplier(arg);
+        }
+        else {
+            return supplier;
+        }
+    }),
+};

package/dist/cjs/core/fetcher/Fetcher.d.ts

@@ -1,12 +1,13 @@
-import { APIResponse } from "./APIResponse.js";
-import { Supplier } from "./Supplier.js";
+import type { APIResponse } from "./APIResponse.js";
+import type { EndpointMetadata } from "./EndpointMetadata.js";
+import { EndpointSupplier } from "./EndpointSupplier.js";
 export type FetchFunction = <R = unknown>(args: Fetcher.Args) => Promise<APIResponse<R, Fetcher.Error>>;
 export declare namespace Fetcher {
     interface Args {
         url: string;
         method: string;
         contentType?: string;
-        headers?: Record<string, string | Supplier<string | null | undefined> | null | undefined>;
+        headers?: Record<string, string | EndpointSupplier<string | null | undefined> | null | undefined>;
         queryParameters?: Record<string, unknown>;
         body?: unknown;
         timeoutMs?: number;
@@ -16,6 +17,7 @@ export declare namespace Fetcher {
         requestType?: "json" | "file" | "bytes";
         responseType?: "json" | "blob" | "sse" | "streaming" | "text" | "arrayBuffer" | "binary-response";
         duplex?: "half";
+        endpointMetadata?: EndpointMetadata;
     }
     type Error = FailedStatusCodeError | NonJsonError | TimeoutError | UnknownError;
     interface FailedStatusCodeError {

package/dist/cjs/core/fetcher/Fetcher.js

@@ -13,6 +13,7 @@ exports.fetcher = void 0;
 exports.fetcherImpl = fetcherImpl;
 const json_js_1 = require("../json.js");
 const createRequestUrl_js_1 = require("./createRequestUrl.js");
+const EndpointSupplier_js_1 = require("./EndpointSupplier.js");
 const getErrorResponseBody_js_1 = require("./getErrorResponseBody.js");
 const getFetchFn_js_1 = require("./getFetchFn.js");
 const getRequestBody_js_1 = require("./getRequestBody.js");
@@ -20,9 +21,9 @@ const getResponseBody_js_1 = require("./getResponseBody.js");
 const makeRequest_js_1 = require("./makeRequest.js");
 const RawResponse_js_1 = require("./RawResponse.js");
 const requestWithRetries_js_1 = require("./requestWithRetries.js");
-const Supplier_js_1 = require("./Supplier.js");
 function getHeaders(args) {
     return __awaiter(this, void 0, void 0, function* () {
+        var _a;
         const newHeaders = {};
         if (args.body !== undefined && args.contentType != null) {
             newHeaders["Content-Type"] = args.contentType;
@@ -31,7 +32,7 @@ function getHeaders(args) {
             return newHeaders;
         }
         for (const [key, value] of Object.entries(args.headers)) {
-            const result = yield Supplier_js_1.Supplier.get(value);
+            const result = yield EndpointSupplier_js_1.EndpointSupplier.get(value, { endpointMetadata: (_a = args.endpointMetadata) !== null && _a !== void 0 ? _a : {} });
             if (typeof result === "string") {
                 newHeaders[key] = result;
                 continue;

package/dist/cjs/core/fetcher/HttpResponsePromise.d.ts

@@ -1,4 +1,4 @@
-import { WithRawResponse } from "./RawResponse.js";
+import type { WithRawResponse } from "./RawResponse.js";
 /**
  * A promise that returns the parsed response and lets you retrieve the raw response too.
  */

package/dist/cjs/core/fetcher/index.d.ts

@@ -1,5 +1,7 @@
 export type { APIResponse } from "./APIResponse.js";
 export type { BinaryResponse } from "./BinaryResponse.js";
+export type { EndpointMetadata } from "./EndpointMetadata.js";
+export { EndpointSupplier } from "./EndpointSupplier.js";
 export type { Fetcher, FetchFunction } from "./Fetcher.js";
 export { fetcher } from "./Fetcher.js";
 export { getHeader } from "./getHeader.js";

package/dist/cjs/core/fetcher/index.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Supplier = exports.unknownRawResponse = exports.toRawResponse = exports.abortRawResponse = exports.HttpResponsePromise = exports.getHeader = exports.fetcher = void 0;
+exports.Supplier = exports.unknownRawResponse = exports.toRawResponse = exports.abortRawResponse = exports.HttpResponsePromise = exports.getHeader = exports.fetcher = exports.EndpointSupplier = void 0;
+var EndpointSupplier_js_1 = require("./EndpointSupplier.js");
+Object.defineProperty(exports, "EndpointSupplier", { enumerable: true, get: function () { return EndpointSupplier_js_1.EndpointSupplier; } });
 var Fetcher_js_1 = require("./Fetcher.js");
 Object.defineProperty(exports, "fetcher", { enumerable: true, get: function () { return Fetcher_js_1.fetcher; } });
 var getHeader_js_1 = require("./getHeader.js");

package/dist/cjs/core/headers.d.ts

@@ -1,3 +1,2 @@
-import * as core from "./index.js";
-export declare function mergeHeaders(...headersArray: (Record<string, string | core.Supplier<string | null | undefined> | null | undefined> | null | undefined)[]): Record<string, string | core.Supplier<string | null | undefined>>;
-export declare function mergeOnlyDefinedHeaders(...headersArray: (Record<string, string | core.Supplier<string | null | undefined> | null | undefined> | null | undefined)[]): Record<string, string | core.Supplier<string | null | undefined>>;
+export declare function mergeHeaders<THeaderValue>(...headersArray: (Record<string, THeaderValue> | null | undefined)[]): Record<string, string | THeaderValue>;
+export declare function mergeOnlyDefinedHeaders<THeaderValue>(...headersArray: (Record<string, THeaderValue> | null | undefined)[]): Record<string, THeaderValue>;

package/dist/cjs/environments.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export declare const phenomlEnvironment: {
     readonly Default: "https://experiment.app.pheno.ml";
 };

package/dist/cjs/environments.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.phenomlEnvironment = void 0;
 exports.phenomlEnvironment = {

package/dist/cjs/errors/phenomlError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 import * as core from "../core/index.js";
 export declare class phenomlError extends Error {
     readonly statusCode?: number;

package/dist/cjs/errors/phenomlError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.phenomlError = void 0;
 const json_js_1 = require("../core/json.js");

package/dist/cjs/errors/phenomlTimeoutError.d.ts

@@ -1,6 +1,3 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
 export declare class phenomlTimeoutError extends Error {
     constructor(message: string);
 }

package/dist/cjs/errors/phenomlTimeoutError.js

@@ -1,7 +1,5 @@
 "use strict";
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.phenomlTimeoutError = void 0;
 class phenomlTimeoutError extends Error {

package/dist/cjs/version.d.ts

@@ -1 +1 @@
-export declare const SDK_VERSION = "0.0.4";
+export declare const SDK_VERSION = "0.0.6";

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.SDK_VERSION = void 0;
-exports.SDK_VERSION = "0.0.4";
+exports.SDK_VERSION = "0.0.6";

package/dist/esm/BaseClient.d.mts

@@ -0,0 +1,27 @@
+import * as environments from "./environments.mjs";
+import * as core from "./core/index.mjs";
+export interface BaseClientOptions {
+    environment?: core.Supplier<environments.phenomlEnvironment | string>;
+    /** Specify a custom URL to connect the client to. */
+    baseUrl?: core.Supplier<string>;
+    token?: core.Supplier<core.BearerToken | undefined>;
+    /** Additional headers to include in requests. */
+    headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
+    /** The default maximum time to wait for a response in seconds. */
+    timeoutInSeconds?: number;
+    /** The default number of times to retry the request. Defaults to 2. */
+    maxRetries?: number;
+    fetcher?: core.FetchFunction;
+}
+export interface BaseRequestOptions {
+    /** The maximum time to wait for a response in seconds. */
+    timeoutInSeconds?: number;
+    /** The number of times to retry the request. Defaults to 2. */
+    maxRetries?: number;
+    /** A hook to abort the request. */
+    abortSignal?: AbortSignal;
+    /** Additional query string parameters to include in the request. */
+    queryParams?: Record<string, unknown>;
+    /** Additional headers to include in the request. */
+    headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
+}

package/dist/esm/BaseClient.mjs

@@ -0,0 +1,3 @@
+// This file was auto-generated by Fern from our API Definition.
+import * as environments from "./environments.mjs";
+import * as core from "./core/index.mjs";

package/dist/esm/Client.d.mts

@@ -1,8 +1,4 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "./environments.mjs";
-import * as core from "./core/index.mjs";
+import type { BaseClientOptions, BaseRequestOptions } from "./BaseClient.mjs";
 import { Agent } from "./api/resources/agent/client/Client.mjs";
 import { Authtoken } from "./api/resources/authtoken/client/Client.mjs";
 import { Cohort } from "./api/resources/cohort/client/Client.mjs";
@@ -11,27 +7,11 @@ import { Fhir } from "./api/resources/fhir/client/Client.mjs";
 import { FhirProvider } from "./api/resources/fhirProvider/client/Client.mjs";
 import { Lang2Fhir } from "./api/resources/lang2Fhir/client/Client.mjs";
 import { Tools } from "./api/resources/tools/client/Client.mjs";
+import { Workflows } from "./api/resources/workflows/client/Client.mjs";
 export declare namespace phenomlClient {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token?: core.Supplier<core.BearerToken | undefined>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
-    interface RequestOptions {
-        /** The maximum time to wait for a response in seconds. */
-        timeoutInSeconds?: number;
-        /** The number of times to retry the request. Defaults to 2. */
-        maxRetries?: number;
-        /** A hook to abort the request. */
-        abortSignal?: AbortSignal;
-        /** Additional query string parameters to include in the request. */
-        queryParams?: Record<string, unknown>;
-        /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
+    interface RequestOptions extends BaseRequestOptions {
     }
 }
 export declare class phenomlClient {
@@ -44,6 +24,7 @@ export declare class phenomlClient {
     protected _fhirProvider: FhirProvider | undefined;
     protected _lang2Fhir: Lang2Fhir | undefined;
     protected _tools: Tools | undefined;
+    protected _workflows: Workflows | undefined;
     constructor(_options?: phenomlClient.Options);
     get agent(): Agent;
     get authtoken(): Authtoken;
@@ -53,4 +34,5 @@ export declare class phenomlClient {
     get fhirProvider(): FhirProvider;
     get lang2Fhir(): Lang2Fhir;
     get tools(): Tools;
+    get workflows(): Workflows;
 }

package/dist/esm/Client.mjs

@@ -1,8 +1,7 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
+// This file was auto-generated by Fern from our API Definition.
 import * as core from "./core/index.mjs";
 import { mergeHeaders } from "./core/headers.mjs";
+import * as environments from "./environments.mjs";
 import { Agent } from "./api/resources/agent/client/Client.mjs";
 import { Authtoken } from "./api/resources/authtoken/client/Client.mjs";
 import { Cohort } from "./api/resources/cohort/client/Client.mjs";
@@ -11,13 +10,14 @@ import { Fhir } from "./api/resources/fhir/client/Client.mjs";
 import { FhirProvider } from "./api/resources/fhirProvider/client/Client.mjs";
 import { Lang2Fhir } from "./api/resources/lang2Fhir/client/Client.mjs";
 import { Tools } from "./api/resources/tools/client/Client.mjs";
+import { Workflows } from "./api/resources/workflows/client/Client.mjs";
 export class phenomlClient {
     constructor(_options = {}) {
         this._options = Object.assign(Object.assign({}, _options), { headers: mergeHeaders({
                 "X-Fern-Language": "JavaScript",
                 "X-Fern-SDK-Name": "phenoml",
-                "X-Fern-SDK-Version": "0.0.4",
-                "User-Agent": "phenoml/0.0.4",
+                "X-Fern-SDK-Version": "0.0.6",
+                "User-Agent": "phenoml/0.0.6",
                 "X-Fern-Runtime": core.RUNTIME.type,
                 "X-Fern-Runtime-Version": core.RUNTIME.version,
             }, _options === null || _options === void 0 ? void 0 : _options.headers) });
@@ -54,4 +54,8 @@ export class phenomlClient {
         var _a;
         return ((_a = this._tools) !== null && _a !== void 0 ? _a : (this._tools = new Tools(this._options)));
     }
+    get workflows() {
+        var _a;
+        return ((_a = this._workflows) !== null && _a !== void 0 ? _a : (this._workflows = new Workflows(this._options)));
+    }
 }

package/dist/esm/WrapperClient.mjs

@@ -12,6 +12,7 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
     });
 };
 import * as environments from "./environments.mjs";
+import * as core from "./core/index.mjs";
 import { phenomlClient } from "./Client.mjs";
 import { Auth } from "./api/resources/authtoken/resources/auth/client/Client.mjs";
 // Create a token supplier that generates tokens on-demand

package/dist/esm/api/index.d.mts

@@ -1 +1,2 @@
 export * from "./resources/index.mjs";
+export * from "./types/index.mjs";

package/dist/esm/api/index.mjs

@@ -1 +1,2 @@
 export * from "./resources/index.mjs";
+export * from "./types/index.mjs";

package/dist/esm/api/resources/agent/client/Client.d.mts

@@ -1,31 +1,11 @@
-/**
- * This file was auto-generated by Fern from our API Definition.
- */
-import * as environments from "../../../../environments.mjs";
+import type { BaseClientOptions, BaseRequestOptions } from "../../../../BaseClient.mjs";
 import * as core from "../../../../core/index.mjs";
 import * as phenoml from "../../../index.mjs";
 import { Prompts } from "../resources/prompts/client/Client.mjs";
 export declare namespace Agent {
-    interface Options {
-        environment?: core.Supplier<environments.phenomlEnvironment | string>;
-        /** Specify a custom URL to connect the client to. */
-        baseUrl?: core.Supplier<string>;
-        token?: core.Supplier<core.BearerToken | undefined>;
-        /** Additional headers to include in requests. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
-        fetcher?: core.FetchFunction;
+    interface Options extends BaseClientOptions {
     }
-    interface RequestOptions {
-        /** The maximum time to wait for a response in seconds. */
-        timeoutInSeconds?: number;
-        /** The number of times to retry the request. Defaults to 2. */
-        maxRetries?: number;
-        /** A hook to abort the request. */
-        abortSignal?: AbortSignal;
-        /** Additional query string parameters to include in the request. */
-        queryParams?: Record<string, unknown>;
-        /** Additional headers to include in the request. */
-        headers?: Record<string, string | core.Supplier<string | null | undefined> | null | undefined>;
+    interface RequestOptions extends BaseRequestOptions {
     }
 }
 export declare class Agent {
@@ -64,7 +44,10 @@ export declare class Agent {
      * @throws {@link phenoml.agent.InternalServerError}
      *
      * @example
-     *     await client.agent.list()
+     *     await client.agent.list({
+     *         is_active: true,
+     *         tags: "tags"
+     *     })
      */
     list(request?: phenoml.agent.AgentListRequest, requestOptions?: Agent.RequestOptions): core.HttpResponsePromise<phenoml.agent.AgentListResponse>;
     private __list;
@@ -182,7 +165,10 @@ export declare class Agent {
      *
      * @example
      *     await client.agent.getChatMessages({
-     *         chat_session_id: "chat_session_id"
+     *         chat_session_id: "chat_session_id",
+     *         num_messages: 1,
+     *         role: "role",
+     *         order: "asc"
      *     })
      */
     getChatMessages(request: phenoml.agent.AgentGetChatMessagesRequest, requestOptions?: Agent.RequestOptions): core.HttpResponsePromise<phenoml.agent.AgentGetChatMessagesResponse>;