phasegate 0.160.17 → 0.160.19

package/README.ja.md

@@ -305,6 +305,12 @@ L2-STORY-REFLECTION バリデータがこのアノテーションを検出し、
   "phaseDependencies": { "preset": "standard", "storyReflection": { "enabled": true } },
   "quickMode":      { "allowedCategories": ["bugfix", "docs", "test", "config"] },
   "protectedFiles": { "exclude": ["package.json"] },
+  "paths": {
+    "designDocs": "docs/product/construction",
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
+  },
   "baseline":       { "enabled": true, "path": ".phasegate/baseline.json" }
 }
 ```
@@ -329,6 +335,7 @@ phasegate には独立した 3 系統の preset があります。役割が違
 |---|---|
 | `quickMode.fullModeRequiredWhen` | Quick Mode → Full Mode への強制エスカレート条件（複数カテゴリ混在 / 新規ドメインファイル / API 契約変更）。安全側の default は全 `true` |
 | `protectedFiles.exclude` | デフォルト保護対象（`package.json`, `tsconfig.json`, `biome.json` 等）から除外したいファイル |
+| `paths.designDocs` / `paths.inceptionDocs` / `paths.principlesDocs` / `paths.folderRulesDoc` | PhaseGate が参照・配置する設計/原則/配置ルール文書の場所。`docs/` 以外の既存規約にもマッピング可能 |
 | `baseline.enabled` | 既存リポジトリ導入時の retrofit grandfather。default `true`。`npx phasegate baseline` で snapshot 生成 |
 | `phaseDependencies.storyReflection` | inception 設計が product docs に反映されるまで `src/{unit}/` への書き込みをブロック |
 

package/README.md

@@ -109,7 +109,7 @@ npx phasegate install --personal --agent claude --dry-run
 npx phasegate install --personal --agent claude --apply
 ```
 
-`--personal` does not plan or write `package.json`, `AGENTS.md`, `CLAUDE.md`, `.husky/*`, `.github/workflows/*`, `.gitignore`, GitHub CLI config, repo secrets, or CI settings. It creates `.phasegate-local/phasegate.config.json`, local agent context (`.claude/CLAUDE.local.md` and/or `.codex/AGENTS.local.md`), real local-only agent runtime artifacts for the selected agent (`.claude/settings.json` + `.claude/skills/` and/or `.codex/hooks.json` + `.codex/skills/`), local git hooks under `.git/hooks/`, local reference docs under `.phasegate-local/docs/`, a managed local-only block in `.git/info/exclude`, and `.phasegate/manifest.json`. Codex user-level hook feature enablement remains a manual action. <!-- @work-item-id WI-207 --> <!-- @work-item-id WI-208 --> <!-- @work-item-id WI-209 --> <!-- @work-item-id WI-213 -->
+`--personal` does not plan or write `package.json`, `CLAUDE.md`, `.husky/*`, `.github/workflows/*`, `.gitignore`, GitHub CLI config, repo secrets, or CI settings. It creates `.phasegate-local/phasegate.config.json`, runtime-visible local agent context (`.claude/CLAUDE.md` for Claude, and `AGENTS.md` for Codex only when that root file is absent or already PhaseGate-managed), real local-only agent runtime artifacts for the selected agent (`.claude/settings.json` + `.claude/skills/` and/or `.codex/hooks.json` + `.codex/skills/`), local git hooks under `.git/hooks/`, local reference docs under `.phasegate-local/docs/`, a managed local-only block in `.git/info/exclude`, and `.phasegate/manifest.json`. If a team `AGENTS.md` already exists, personal Codex install leaves it unchanged and `doctor --personal --agent codex` reports the remaining context step instead of hiding it behind `AGENTS.override.md`. Codex user-level hook feature enablement remains a manual action. <!-- @work-item-id WI-207 --> <!-- @work-item-id WI-208 --> <!-- @work-item-id WI-209 --> <!-- @work-item-id WI-213 --> <!-- @work-item-id WI-215 -->
 
 For agent-driven setup planning, use:
 
@@ -416,6 +416,12 @@ For selection guidance and config examples see [Preset Selection Guide](docs/gui
   "protectedFiles": {
     "exclude": ["tsconfig.json", "package.json"]
   },
+  "paths": {
+    "designDocs": "docs/product/construction",
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
+  },
   "baseline": {
     "enabled": true,
     "path": ".phasegate/baseline.json"
@@ -425,6 +431,8 @@ For selection guidance and config examples see [Preset Selection Guide](docs/gui
 
 `quickMode.fullModeRequiredWhen` declares which conditions force a Quick Mode change to escalate to the full `/story-implementor` flow. All three triggers default to `true` so retrofits stay safe; flip individual flags to `false` only when a project intentionally accepts the risk.
 
+`paths` maps PhaseGate's design and reference documentation roots. Repositories that do not use `docs/` can point `designDocs`, `inceptionDocs`, `principlesDocs`, and `folderRulesDoc` at their own documentation layout; product-wide Level 1 artifacts are overridden separately with custom `phaseDependencies.gates[]`. <!-- @work-item-id WI-214 -->
+
 `baseline` opts in to the **Phase A-2 retrofit grandfather**: pre-existing files captured in `.phasegate/baseline.json` are exempted from `phase-gate` until they are structurally modified. Generate the snapshot with `npx phasegate baseline` before introducing the harness to an existing repository. Since v0.71.0 the `baseline.enabled` flag defaults to `true`, so simply running `npx phasegate baseline` after `init` is enough — no manual config edit needed. For a step-by-step retrofit walkthrough see [Retrofit Adoption Guide](docs/guide/retrofit-adoption.md).
 
 ---

package/docs/guide/configuration.md

@@ -64,7 +64,9 @@ The plan identifies target fields, managed artifacts, commands, validation, risk
   },
   "paths": {
     "designDocs": "docs/product/construction",
-    "inceptionDocs": "docs/inception"
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
   },
   "reporting": {
     "format": "json",
@@ -463,10 +465,14 @@ Quick Mode with `relaxedGates: ["phase-gate"]` relaxes `storyReflection` as well
 
 #### `paths`
 
-| Sub-field       | Type     | Default                        | Description                                           |
-|-----------------|----------|--------------------------------|-------------------------------------------------------|
-| `designDocs`    | `string` | `"docs/product/construction"`  | Root directory for confirmed design documents (logical design, domain model). |
-| `inceptionDocs` | `string` | `"docs/inception"`             | Root directory for inception-phase documents (stories, unit designs).         |
+<!-- @work-item-id WI-214 -->
+
+| Sub-field        | Type     | Default                              | Description                                           |
+|------------------|----------|--------------------------------------|-------------------------------------------------------|
+| `designDocs`     | `string` | `"docs/product/construction"`        | Root directory for confirmed design documents (logical design, domain model). |
+| `inceptionDocs`  | `string` | `"docs/inception"`                   | Root directory for inception-phase documents (stories, unit designs).         |
+| `principlesDocs` | `string` | `"docs/principles"`                  | Root directory for immutable PhaseGate principles docs. |
+| `folderRulesDoc` | `string` | `"docs/folder_management_rules.md"`  | File path for the folder management rules document. |
 
 #### `reporting`
 
@@ -611,6 +617,8 @@ docs/
 
 If you move your design documents to a non-default location, update `paths` accordingly so that all validators and hooks resolve files correctly.
 
+`paths.principlesDocs` and `paths.folderRulesDoc` also control where setup deploys PhaseGate reference docs and what the pre-tool-use hook protects. Existing repositories can keep their own documentation layout, for example `documentation/principles` and `documentation/folder_rules.md`, without adopting the default `docs/` tree. <!-- @work-item-id WI-214 -->
+
 **How paths flow into the L2 phase-gate validator (since v0.117.0 / WI-085):**
 
 <!-- @work-item-id WI-149 -->
@@ -621,6 +629,8 @@ If you move your design documents to a non-default location, update `paths` acco
 |---|---|---|
 | `{designDocsRoot}` | `paths.designDocs` | `docs/product/construction` |
 | `{inceptionDocsRoot}` | `paths.inceptionDocs` | `docs/inception` |
+| `{principlesDocsRoot}` | `paths.principlesDocs` | `docs/principles` |
+| `{folderRulesPath}` | `paths.folderRulesDoc` | `docs/folder_management_rules.md` |
 
 Setting `paths.designDocs` to `mydocs/product/construction` makes the L2 phase-gate require `mydocs/product/construction/{unit}/domain_model.md` instead of the default. This setting points to the construction subtree, not the broader product root; product-wide artifacts under `docs/product/` stay literal unless you define a custom `phaseDependencies.gates[]` preset. Default values match the v0.115.0 layout for full backward compatibility.
 

package/docs/guide/installation.md

@@ -65,7 +65,9 @@ npx phasegate install --personal --agent claude --dry-run
 npx phasegate install --personal --agent claude --apply
 ```
 
-Personal install keeps team-owned files out of both the plan and apply path: `package.json`, `AGENTS.md`, `CLAUDE.md`, `.husky/*`, `.github/workflows/*`, `.gitignore`, GitHub CLI config, repo secrets, and CI settings are not touched. PhaseGate writes `.phasegate-local/phasegate.config.json`, creates local agent context (`.claude/CLAUDE.local.md` and/or `.codex/AGENTS.local.md`), creates real local-only agent runtime artifacts for the selected agent (`.claude/settings.json` + `.claude/skills/` and/or `.codex/hooks.json` + `.codex/skills/`), deploys local git hooks under `.git/hooks/`, copies reference docs under `.phasegate-local/docs/`, records `.phasegate/manifest.json`, and manages a local exclude block in `.git/info/exclude`. Codex user-level hook feature enablement is still reported as a manual action. <!-- @work-item-id WI-207 --> <!-- @work-item-id WI-208 --> <!-- @work-item-id WI-209 --> <!-- @work-item-id WI-213 -->
+Personal install keeps team-owned files out of the apply path: `package.json`, `CLAUDE.md`, `.husky/*`, `.github/workflows/*`, `.gitignore`, GitHub CLI config, repo secrets, and CI settings are not touched. PhaseGate writes `.phasegate-local/phasegate.config.json`, creates runtime-visible local agent context (`.claude/CLAUDE.md` for Claude, and `AGENTS.md` for Codex only when that root file is absent or already PhaseGate-managed), creates real local-only agent runtime artifacts for the selected agent (`.claude/settings.json` + `.claude/skills/` and/or `.codex/hooks.json` + `.codex/skills/`), deploys local git hooks under `.git/hooks/`, copies reference docs under `.phasegate-local/docs/`, records `.phasegate/manifest.json`, and manages a local exclude block in `.git/info/exclude`. If a team `AGENTS.md` already exists, personal Codex install leaves it unchanged and `doctor --personal --agent codex` reports the remaining context step instead of hiding it behind `AGENTS.override.md`. Codex user-level hook feature enablement is still reported as a manual action. <!-- @work-item-id WI-207 --> <!-- @work-item-id WI-208 --> <!-- @work-item-id WI-209 --> <!-- @work-item-id WI-213 --> <!-- @work-item-id WI-215 -->
+
+If an existing repository keeps design or governance docs outside `docs/`, set `paths.designDocs`, `paths.inceptionDocs`, `paths.principlesDocs`, and `paths.folderRulesDoc` in `phasegate.config.json` before setup/reconcile. PhaseGate deploy and hook protection use those mappings instead of forcing the default `docs/` layout. <!-- @work-item-id WI-214 -->
 
 For agent-readable planning before writing files:
 

package/docs/guide/setup-artifacts.md

@@ -7,6 +7,7 @@ PhaseGate setup is more than `phasegate.config.json`. A healthy installation is
 <!-- @work-item-id WI-169 -->
 <!-- @work-item-id WI-208 -->
 <!-- @work-item-id WI-209 -->
+<!-- @work-item-id WI-215 -->
 
 ## Artifact Classes
 
@@ -16,7 +17,7 @@ PhaseGate setup is more than `phasegate.config.json`. A healthy installation is
 | Configuration | `phasegate.config.json`, `package.json` | User owned, PhaseGate assisted | Created by `init` or project install when absent; `install` may merge scripts/devDependency into `package.json` |
 | Generated artifact | `.phasegate/manifest.json`, `.phasegate/backups/*`, `.phasegate/uninstalled-*.json`, `.phasegate/baseline.json` | PhaseGate | Written by lifecycle commands and validators; safe to regenerate only through the owning command |
 | Runtime state/report | `.phasegate/hook-skip-events.jsonl`, explicit `doctor --report-out <path>` output, `reports/regression/*`, resolved `reporting.outputDir` reports | PhaseGate command output | Produced while hooks, doctor, and validation commands run |
-| Personal install artifact | `.phasegate-local/phasegate.config.json`, ignored real `.claude/settings.json` + `.claude/skills/`, ignored real `.codex/hooks.json` + `.codex/skills/`, `.git/info/exclude` PhaseGate block | One developer on one machine | Created by `phasegate install --personal --agent <agent>`; team `.gitignore`, team-owned files, GitHub CLI config, repo secrets, and CI settings are not modified |
+| Personal install artifact | `.phasegate-local/phasegate.config.json`, ignored real `.claude/CLAUDE.md` + `.claude/settings.json` + `.claude/skills/`, ignored real `.codex/hooks.json` + `.codex/skills/`, optional ignored root `AGENTS.md`, `.git/info/exclude` PhaseGate block | One developer on one machine | Created by `phasegate install --personal --agent <agent>`; team `.gitignore`, team-owned files, GitHub CLI config, repo secrets, and CI settings are not modified |
 | Legacy artifact | `.harness-hooks.yml`, old Fuse hook files, `.harness/session-state.json`, `.harness/context-priority.json`, `.harness/reports` fallback | Compatibility only | Not required for current install lifecycle unless a project intentionally keeps an archived integration |
 | User-level setting | Codex CLI `hooks` feature flag | User machine | Must be enabled manually with `codex features enable hooks`; project commands do not modify it |
 
@@ -44,6 +45,8 @@ PhaseGate setup is more than `phasegate.config.json`. A healthy installation is
 
 If `.claude/*` or `.codex/*` already exists and is not a PhaseGate-managed personal artifact, personal install reports manual review and preserves the existing path. <!-- @work-item-id WI-209 -->
 
+Personal agent context is also placed only where the runtime will read it. Claude Code uses `.claude/CLAUDE.md`. Codex uses root `AGENTS.md` when PhaseGate can create or manage it locally; if a team `AGENTS.md` already exists, PhaseGate leaves it unchanged and doctor reports `codex-context-missing` instead of creating `AGENTS.override.md`. <!-- @work-item-id WI-215 -->
+
 Project install uses a different topology: selected bundled skills are deployed once to root `skills/`, and `.claude/skills` / `.codex/skills` point to that shared target. If an older project install has the links but an empty `skills/` target, `phasegate doctor` reports the selected agent skill check and `phasegate reconcile --apply` repairs the shared skill bodies. <!-- @work-item-id WI-210 -->
 
 ## Doctor Findings

package/docs/templates/personal/git-info-exclude

@@ -4,3 +4,4 @@
 .claude/
 skills/
 phasegate.config.json
+AGENTS.md

package/docs/templates/personal/phasegate-local-config.json

@@ -55,7 +55,9 @@
   },
   "paths": {
     "designDocs": ".phasegate-local/product/construction",
-    "inceptionDocs": ".phasegate-local/inception"
+    "inceptionDocs": ".phasegate-local/inception",
+    "principlesDocs": ".phasegate-local/docs/principles",
+    "folderRulesDoc": ".phasegate-local/docs/folder_management_rules.md"
   },
   "reporting": {
     "format": "json",

package/docs/templates/project/phasegate.config.json

@@ -20,7 +20,9 @@
   "harnesses": {},
   "paths": {
     "designDocs": "docs/product/construction",
-    "inceptionDocs": "docs/inception"
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
   },
   "reporting": {
     "format": "json",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "phasegate",
-  "version": "0.160.17",
+  "version": "0.160.19",
   "packageManager": "pnpm@10.30.1",
   "description": "Phasegate — AI-agnostic quality defense toolkit. Enforces structural integrity between design intent and code.",
   "license": "MIT",

package/scripts/harness/agent-integration/application/usecases/handle-pre-tool-use-usecase.ts

@@ -5,6 +5,7 @@
  * @work-item-id WI-201
  * @work-item-id WI-202 / WI-204
  * @work-item-id WI-206
+ * @work-item-id WI-214
  *
  * HandlePreToolUseUseCase
  * PreToolUse Hook処理のオーケストレーション
@@ -116,7 +117,7 @@ export class HandlePreToolUseUseCase {
       const blockedFilePath = metadata?.blockedFilePath ?? input.targetFilePaths[0];
 
       if (metadata?.reason === "PROTECTED_FILE") {
-        return HandlePreToolUseUseCase.buildProtectedFileBlockOutput(blockedFilePath);
+        return this.buildProtectedFileBlockOutput(blockedFilePath);
       }
 
       if (metadata?.reason === "PHASE_GATE") {
@@ -492,15 +493,22 @@ export class HandlePreToolUseUseCase {
       message: (fp) =>
         `保護ファイルへの書き込みがブロックされました: ${fp}\nClaude Code の設定変更は /update-config スキルを使用してください。`,
     },
-    {
-      pattern: /(?:^|\/)docs\/principles\//,
-      message: (fp) =>
-        `保護ファイルへの書き込みがブロックされました: ${fp}\n原則ドキュメントは immutable です。変更はできません。`,
-    },
   ];
 
-  private static buildProtectedFileBlockOutput(blockedFilePath: string | undefined): HandlePreToolUseOutput {
+  private async buildProtectedFileBlockOutput(blockedFilePath: string | undefined): Promise<HandlePreToolUseOutput> {
     const fp = blockedFilePath ?? "不明なファイル";
+    const dynamicPrinciplesPattern = await this.findMatchingDynamicProtectedPattern(fp, "principles");
+    if (dynamicPrinciplesPattern !== null) {
+      return {
+        shouldBlock: true,
+        blockedFilePath,
+        blockReason: "PROTECTED_FILE",
+        error: {
+          message: `保護ファイルへの書き込みがブロックされました: ${fp}\n原則ドキュメントは immutable です。変更はできません。対象パターン: ${dynamicPrinciplesPattern}`,
+        },
+      };
+    }
+
     const matched = HandlePreToolUseUseCase.PROTECTED_FILE_GUIDANCE.find(({ pattern }) => pattern.test(fp));
     const message = matched
       ? matched.message(fp)
@@ -514,6 +522,20 @@ export class HandlePreToolUseUseCase {
     };
   }
 
+  private async findMatchingDynamicProtectedPattern(filePath: string, kind: "principles"): Promise<string | null> {
+    const patterns = await this.configQueryPort.getProtectedFilePatterns();
+    for (const pattern of patterns) {
+      if (kind === "principles" && !pattern.endsWith("/**")) {
+        continue;
+      }
+      const prefix = pattern.slice(0, -"/**".length);
+      if (filePath === prefix || filePath.startsWith(`${prefix}/`)) {
+        return pattern;
+      }
+    }
+    return null;
+  }
+
   private static buildStoryReflectionBlockOutput(
     blockedFilePath: string | undefined,
     blockers: readonly string[],

package/scripts/harness/agent-integration/infrastructure/adapters/harness-config-config-query-adapter.ts

@@ -36,6 +36,7 @@ interface HarnessesSection {
 }
 
 interface ProtectedFilesSection {
+  patterns?: string[];
   exclude?: string[];
 }
 
@@ -57,6 +58,12 @@ interface AgentIntegrationSection {
 }
 
 interface HarnessConfigDocument {
+  paths?: {
+    designDocs?: string;
+    inceptionDocs?: string;
+    principlesDocs?: string;
+    folderRulesDoc?: string;
+  };
   harnesses?: HarnessesSection;
   project?: ProjectSection;
   protectedFiles?: ProtectedFilesSection;
@@ -102,8 +109,15 @@ export class HarnessConfigConfigQueryAdapter implements ConfigQueryPort {
   }
 
   async getProtectedFilePatterns(): Promise<string[]> {
-    // Wave 2 では追加カスタムパターンなし
-    return [];
+    const config = this.loadConfig();
+    const configured = config.protectedFiles?.patterns ?? [];
+    const principlesDocs = config.paths?.principlesDocs ?? 'docs/principles';
+    const folderRulesDoc = config.paths?.folderRulesDoc ?? 'docs/folder_management_rules.md';
+    return [
+      ...configured,
+      `${normalizeProjectPath(principlesDocs)}/**`,
+      normalizeProjectPath(folderRulesDoc),
+    ];
   }
 
   async getProtectedFileExclusions(): Promise<string[]> {
@@ -119,12 +133,13 @@ export class HarnessConfigConfigQueryAdapter implements ConfigQueryPort {
   getProjectPaths(): ProjectPaths {
     const config = this.loadConfig();
     const paths = config.project?.paths;
+    const topLevelPaths = config.paths;
 
     return ProjectPaths.create(
       paths?.source ?? ['scripts/harness'],
       {
-        construction: paths?.docs?.construction ?? 'docs/product/construction',
-        inception: paths?.docs?.inception ?? 'docs/inception',
+        construction: paths?.docs?.construction ?? topLevelPaths?.designDocs ?? 'docs/product/construction',
+        inception: paths?.docs?.inception ?? topLevelPaths?.inceptionDocs ?? 'docs/inception',
       },
     );
   }
@@ -145,3 +160,7 @@ export class HarnessConfigConfigQueryAdapter implements ConfigQueryPort {
     return enforce === true;
   }
 }
+
+function normalizeProjectPath(path: string): string {
+  return path.replace(/\\/g, '/').replace(/\/+$/g, '');
+}

package/scripts/harness/config-foundation/domain/harness-config.ts

@@ -109,6 +109,8 @@ export interface HarnessConfigResolvedDocument {
   paths: {
     designDocs: string;
     inceptionDocs: string;
+    principlesDocs?: string;
+    folderRulesDoc?: string;
   };
   reporting: {
     format: string;

package/scripts/harness/config-foundation/domain/value-objects/paths-config.ts

@@ -10,18 +10,29 @@ import { ConfigValidationError } from '../errors/config-validation-error.js';
 export interface PathsConfigProps {
   readonly designDocs: string;
   readonly inceptionDocs: string;
+  readonly principlesDocs?: string;
+  readonly folderRulesDoc?: string;
 }
 
 export class PathsConfig {
   readonly designDocs: string;
   readonly inceptionDocs: string;
+  readonly principlesDocs: string;
+  readonly folderRulesDoc: string;
 
   constructor(props: PathsConfigProps) {
+    const principlesDocs = props.principlesDocs ?? 'docs/principles';
+    const folderRulesDoc = props.folderRulesDoc ?? 'docs/folder_management_rules.md';
+
     PathsConfig.validatePath(props.designDocs, 'designDocs');
     PathsConfig.validatePath(props.inceptionDocs, 'inceptionDocs');
+    PathsConfig.validatePath(principlesDocs, 'principlesDocs');
+    PathsConfig.validatePath(folderRulesDoc, 'folderRulesDoc');
 
     this.designDocs = props.designDocs;
     this.inceptionDocs = props.inceptionDocs;
+    this.principlesDocs = principlesDocs;
+    this.folderRulesDoc = folderRulesDoc;
   }
 
   private static validatePath(value: string, fieldName: string): void {
@@ -44,7 +55,9 @@ export class PathsConfig {
   equals(other: PathsConfig): boolean {
     return (
       this.designDocs === other.designDocs &&
-      this.inceptionDocs === other.inceptionDocs
+      this.inceptionDocs === other.inceptionDocs &&
+      this.principlesDocs === other.principlesDocs &&
+      this.folderRulesDoc === other.folderRulesDoc
     );
   }
 }

package/scripts/harness/config-foundation/infrastructure/presets/minimal.json

@@ -41,7 +41,9 @@
   },
   "paths": {
     "designDocs": "docs/product/construction",
-    "inceptionDocs": "docs/inception"
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
   },
   "reporting": {
     "format": "json",

package/scripts/harness/config-foundation/infrastructure/presets/standard.json

@@ -41,7 +41,9 @@
   },
   "paths": {
     "designDocs": "docs/product/construction",
-    "inceptionDocs": "docs/inception"
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
   },
   "reporting": {
     "format": "json",

package/scripts/harness/config-foundation/infrastructure/presets/strict.json

@@ -41,7 +41,9 @@
   },
   "paths": {
     "designDocs": "docs/product/construction",
-    "inceptionDocs": "docs/inception"
+    "inceptionDocs": "docs/inception",
+    "principlesDocs": "docs/principles",
+    "folderRulesDoc": "docs/folder_management_rules.md"
   },
   "reporting": {
     "format": "json",

package/scripts/harness/config-foundation/infrastructure/schemas/harness-config-v3.schema.json

@@ -435,7 +435,9 @@
       "additionalProperties": false,
       "required": [
         "designDocs",
-        "inceptionDocs"
+        "inceptionDocs",
+        "principlesDocs",
+        "folderRulesDoc"
       ],
       "properties": {
         "designDocs": {
@@ -445,6 +447,14 @@
         "inceptionDocs": {
           "type": "string",
           "minLength": 1
+        },
+        "principlesDocs": {
+          "type": "string",
+          "minLength": 1
+        },
+        "folderRulesDoc": {
+          "type": "string",
+          "minLength": 1
         }
       }
     },
@@ -488,6 +498,14 @@
       "type": "object",
       "additionalProperties": false,
       "properties": {
+        "patterns": {
+          "type": "array",
+          "items": {
+            "type": "string",
+            "minLength": 1
+          },
+          "uniqueItems": true
+        },
         "exclude": {
           "type": "array",
           "items": {

package/scripts/harness/installation/application/checks/claude-context-missing-check.ts

@@ -0,0 +1,35 @@
+// @unit installation
+// @layer application
+// @work-item-id WI-215
+
+import type { FileInspectorPort } from "../ports/file-inspector-port.js";
+import type { HeuristicCheck } from "../../domain/ports/heuristic-check.js";
+import type { DiagnosticFinding } from "../../domain/diagnostic-finding.js";
+import { createFinding, projectPath } from "./check-utils.js";
+
+const MARKDOWN_BEGIN = "<!-- phasegate:managed-section:start -->";
+
+export class ClaudeContextMissingCheck implements HeuristicCheck {
+  readonly checkId = "claude-context-missing" as const;
+  private readonly target = ".claude/CLAUDE.md";
+  private readonly projectTarget = "CLAUDE.md";
+  private readonly legacyTarget = ".claude/CLAUDE.local.md";
+
+  async run(projectRoot: string, inspector: FileInspectorPort): Promise<DiagnosticFinding | null> {
+    const content = await inspector.readText(projectPath(projectRoot, this.target));
+    if (content?.includes(MARKDOWN_BEGIN) === true && content.includes("PhaseGate")) return null;
+    const projectContent = await inspector.readText(projectPath(projectRoot, this.projectTarget));
+    if (projectContent?.includes(MARKDOWN_BEGIN) === true && projectContent.includes("PhaseGate")) return null;
+
+    const legacyContent = await inspector.readText(projectPath(projectRoot, this.legacyTarget));
+    return createFinding({
+      checkId: this.checkId,
+      severity: "red",
+      target: this.target,
+      message: legacyContent?.includes("PhaseGate") === true
+        ? ".claude/CLAUDE.local.md は Claude Code の documented discovery path ではありません"
+        : ".claude/CLAUDE.md に runtime-visible PhaseGate context がありません",
+      repairMode: "mechanical",
+    });
+  }
+}

package/scripts/harness/installation/application/checks/codex-context-missing-check.ts

@@ -0,0 +1,32 @@
+// @unit installation
+// @layer application
+// @work-item-id WI-215
+
+import type { FileInspectorPort } from "../ports/file-inspector-port.js";
+import type { HeuristicCheck } from "../../domain/ports/heuristic-check.js";
+import type { DiagnosticFinding } from "../../domain/diagnostic-finding.js";
+import { createFinding, projectPath } from "./check-utils.js";
+
+const MARKDOWN_BEGIN = "<!-- phasegate:managed-section:start -->";
+
+export class CodexContextMissingCheck implements HeuristicCheck {
+  readonly checkId = "codex-context-missing" as const;
+  private readonly target = "AGENTS.md";
+  private readonly legacyTarget = ".codex/AGENTS.local.md";
+
+  async run(projectRoot: string, inspector: FileInspectorPort): Promise<DiagnosticFinding | null> {
+    const content = await inspector.readText(projectPath(projectRoot, this.target));
+    if (content?.includes(MARKDOWN_BEGIN) === true && content.includes("PhaseGate")) return null;
+
+    const legacyContent = await inspector.readText(projectPath(projectRoot, this.legacyTarget));
+    return createFinding({
+      checkId: this.checkId,
+      severity: "red",
+      target: this.target,
+      message: legacyContent?.includes("PhaseGate") === true
+        ? ".codex/AGENTS.local.md は Codex の default discovery path ではありません"
+        : "AGENTS.md に runtime-visible PhaseGate context がありません",
+      repairMode: content === null ? "mechanical" : "manual",
+    });
+  }
+}

package/scripts/harness/installation/application/usecases/run-doctor-diagnostics.ts

@@ -3,6 +3,7 @@
 // @work-item-id WI-145
 // @work-item-id WI-178
 // @work-item-id WI-208
+// @work-item-id WI-215
 
 import { DiagnosticReport } from "../../domain/diagnostic-report.js";
 import type { CheckId } from "../../domain/check-id.js";
@@ -32,8 +33,8 @@ export interface RunDoctorDiagnosticsOutput {
   readonly exitCode: number;
 }
 
-const CLAUDE_ONLY_CHECKS = new Set<CheckId>(["claude-hook-missing", "claude-skills-symlink"]);
-const CODEX_ONLY_CHECKS = new Set<CheckId>(["codex-hook-missing", "codex-skills-symlink"]);
+const CLAUDE_ONLY_CHECKS = new Set<CheckId>(["claude-hook-missing", "claude-context-missing", "claude-skills-symlink"]);
+const CODEX_ONLY_CHECKS = new Set<CheckId>(["codex-hook-missing", "codex-context-missing", "codex-skills-symlink"]);
 const PERSONAL_SCOPED_OUT_CHECKS = new Set<CheckId>([
   "husky-pre-commit-missing",
   "husky-commit-msg-missing",

package/scripts/harness/installation/application/usecases/run-install.ts

@@ -12,6 +12,8 @@
 // @work-item-id WI-209
 // @work-item-id WI-210
 // @work-item-id WI-213
+// @work-item-id WI-214
+// @work-item-id WI-215
 
 import { mkdir, readFile, writeFile, copyFile, chmod, access, lstat, readlink, symlink, readdir, rm } from "node:fs/promises";
 import { dirname, join } from "node:path";
@@ -77,6 +79,7 @@ interface InstallTarget {
   readonly templatePath: string;
   readonly executable?: boolean;
   readonly block?: ManagedBlockInput;
+  readonly personalManualIfUnmanaged?: boolean;
 }
 
 const SKILL_HINT = "invoke /phasegate-config-doctor";
@@ -88,8 +91,10 @@ const MARKDOWN_BEGIN = "<!-- phasegate:managed-section:start -->";
 const MARKDOWN_END = "<!-- phasegate:managed-section:end -->";
 const TEXT_BEGIN = "# phasegate personal install exclude (BEGIN)";
 const TEXT_END = "# phasegate personal install exclude (END)";
-const PERSONAL_AGENT_RUNTIME_FILES = new Set([".claude/settings.json", ".codex/hooks.json"]);
+const PERSONAL_AGENT_RUNTIME_FILES = new Set([".claude/CLAUDE.md", ".claude/settings.json", "AGENTS.md", ".codex/hooks.json"]);
 const SHARED_SKILLS_VERSION_PATH = "skills/.harness-version";
+const PERSONAL_PRINCIPLES_DOCS = ".phasegate-local/docs/principles";
+const PERSONAL_FOLDER_RULES_DOC = ".phasegate-local/docs/folder_management_rules.md";
 
 function isRecord(value: unknown): value is Record<string, unknown> {
   return typeof value === "object" && value !== null && !Array.isArray(value);
@@ -347,8 +352,9 @@ export class RunInstallUseCase {
       const existingEntry = baseManifest.findEntry(target.path);
       const beforeHash = before === null ? null : this.hashCalculator.compute(before);
       const unmanagedPersonalRuntimeFile = input.personal
-        && PERSONAL_AGENT_RUNTIME_FILES.has(target.path)
+        && (PERSONAL_AGENT_RUNTIME_FILES.has(target.path) || target.personalManualIfUnmanaged === true)
         && before !== null
+        && !before.includes(MARKDOWN_BEGIN)
         && (existingEntry === null || beforeHash === null || !beforeHash.equals(existingEntry.hash));
       const repairMode = unmanagedPersonalRuntimeFile ? "manual" : this.repairMode(target, before);
       const next = unmanagedPersonalRuntimeFile ? before : this.merge(target, before, template, input.phasegateVersion);
@@ -361,7 +367,7 @@ export class RunInstallUseCase {
         strategy: target.strategy,
         changed: didChange,
         summary: unmanagedPersonalRuntimeFile
-          ? `${target.path}: existing non-phasegate path requires manual review`
+          ? `${target.path}: existing non-phasegate runtime path requires manual review`
           : didChange ? `${target.path}: ${action}` : `${target.path}: already up to date`,
         diff: unmanagedPersonalRuntimeFile ? "manual review required" : this.diffSummary(before, next),
         skillHint: repairMode === "ai-assisted" ? SKILL_HINT : null,
@@ -626,10 +632,11 @@ export class RunInstallUseCase {
       ...(options.includeClaude
         ? [
             {
-              path: ".claude/CLAUDE.local.md",
+              path: ".claude/CLAUDE.md",
               strategy: "markdown-managed" as const,
               templatePath: "docs/templates/agent-context/CLAUDE.md.template.md",
-              block: { start: MARKDOWN_BEGIN, end: MARKDOWN_END, content: "phasegate personal CLAUDE.local.md managed section" },
+              block: { start: MARKDOWN_BEGIN, end: MARKDOWN_END, content: "phasegate personal .claude/CLAUDE.md managed section" },
+              personalManualIfUnmanaged: true,
             },
             {
               path: ".claude/settings.json",
@@ -641,10 +648,11 @@ export class RunInstallUseCase {
       ...(options.includeCodex
         ? [
             {
-              path: ".codex/AGENTS.local.md",
+              path: "AGENTS.md",
               strategy: "markdown-managed" as const,
               templatePath: "docs/templates/agent-context/AGENTS.md.template.md",
-              block: { start: MARKDOWN_BEGIN, end: MARKDOWN_END, content: "phasegate personal AGENTS.local.md managed section" },
+              block: { start: MARKDOWN_BEGIN, end: MARKDOWN_END, content: "phasegate personal AGENTS.md managed section" },
+              personalManualIfUnmanaged: true,
             },
             {
               path: ".codex/hooks.json",
@@ -666,22 +674,22 @@ export class RunInstallUseCase {
         executable: true,
       },
       {
-        path: ".phasegate-local/docs/folder_management_rules.md",
+        path: PERSONAL_FOLDER_RULES_DOC,
         strategy: "copy" as const,
         templatePath: "docs/folder_management_rules.md",
       },
       {
-        path: ".phasegate-local/docs/principles/architecture-philosophy.md",
+        path: `${PERSONAL_PRINCIPLES_DOCS}/architecture-philosophy.md`,
         strategy: "copy" as const,
         templatePath: "docs/principles/architecture-philosophy.md",
       },
       {
-        path: ".phasegate-local/docs/principles/model-routing.md",
+        path: `${PERSONAL_PRINCIPLES_DOCS}/model-routing.md`,
         strategy: "copy" as const,
         templatePath: "docs/principles/model-routing.md",
       },
       {
-        path: ".phasegate-local/docs/principles/testing-rules.md",
+        path: `${PERSONAL_PRINCIPLES_DOCS}/testing-rules.md`,
         strategy: "copy" as const,
         templatePath: "docs/principles/testing-rules.md",
       },

package/scripts/harness/installation/application/usecases/run-uninstall.ts

@@ -365,7 +365,9 @@ export class RunUninstallUseCase {
     if (mode === "symlink") return "symlink";
     if (mode === "created") return path.endsWith(".yml") || path.endsWith(".yaml") ? "yaml-add" : "created";
     if (path === "package.json") return "package-json";
-    if (path === "AGENTS.md" || path === "CLAUDE.md") return "markdown-managed";
+    if (path === "AGENTS.md" || path === "CLAUDE.md" || path === ".claude/CLAUDE.md" || path === ".claude/CLAUDE.local.md" || path === ".codex/AGENTS.local.md") {
+      return "markdown-managed";
+    }
     if (path === ".git/info/exclude") return "text-managed";
     if (path.endsWith(".json")) return "json";
     if (path.startsWith(".husky/")) return "shell";
@@ -376,7 +378,9 @@ export class RunUninstallUseCase {
     if (path === ".claude/settings.json") return "templates/.claude/settings.json";
     if (path === ".codex/hooks.json") return "templates/.codex/hooks.json";
     if (path === "CLAUDE.md") return "docs/templates/agent-context/CLAUDE.md.template.md";
+    if (path === ".claude/CLAUDE.md" || path === ".claude/CLAUDE.local.md") return "docs/templates/agent-context/CLAUDE.md.template.md";
     if (path === "AGENTS.md") return "docs/templates/agent-context/AGENTS.md.template.md";
+    if (path === ".codex/AGENTS.local.md") return "docs/templates/agent-context/AGENTS.md.template.md";
     throw new Error(`No template for ${path}`);
   }
 

package/scripts/harness/installation/composition-root.ts

@@ -2,9 +2,12 @@
 // @layer presentation
 // @work-item-id WI-145
 // @work-item-id WI-148
+// @work-item-id WI-215
 
+import { ClaudeContextMissingCheck } from "./application/checks/claude-context-missing-check.js";
 import { ClaudeHookMissingCheck } from "./application/checks/claude-hook-missing-check.js";
 import { ClaudeSkillsSymlinkCheck } from "./application/checks/claude-skills-symlink-check.js";
+import { CodexContextMissingCheck } from "./application/checks/codex-context-missing-check.js";
 import { CodexHookMissingCheck } from "./application/checks/codex-hook-missing-check.js";
 import { CodexSkillsSymlinkCheck } from "./application/checks/codex-skills-symlink-check.js";
 import { CiWorkflowMissingCheck } from "./application/checks/ci-workflow-missing-check.js";
@@ -42,7 +45,9 @@ export function createInstallationModule() {
   const hashCalculator = new NodeCryptoHashAdapter();
   const checks = [
     new ClaudeHookMissingCheck(),
+    new ClaudeContextMissingCheck(),
     new CodexHookMissingCheck(),
+    new CodexContextMissingCheck(),
     new HuskyPreCommitMissingCheck(),
     new HuskyCommitMsgMissingCheck(),
     new HuskyPrePushMissingCheck(),

package/scripts/harness/installation/domain/check-id.ts

@@ -1,10 +1,13 @@
 // @unit installation
 // @layer domain
 // @work-item-id WI-145
+// @work-item-id WI-215
 
 export const CHECK_IDS = [
   "claude-hook-missing",
+  "claude-context-missing",
   "codex-hook-missing",
+  "codex-context-missing",
   "husky-pre-commit-missing",
   "husky-commit-msg-missing",
   "husky-pre-push-missing",

package/scripts/harness/installation/domain/repair-table.ts

@@ -1,6 +1,7 @@
 // @unit installation
 // @layer domain
 // @work-item-id WI-145
+// @work-item-id WI-215
 
 import type { CheckId } from "./check-id.js";
 import { SuggestedSkill } from "./suggested-skill.js";
@@ -23,7 +24,9 @@ export class RepairTable {
   constructor() {
     this.table = new Map<CheckId, SuggestedSkill | null>([
       ["claude-hook-missing", CONFIG_DOCTOR],
+      ["claude-context-missing", CONFIG_DOCTOR],
       ["codex-hook-missing", CONFIG_DOCTOR],
+      ["codex-context-missing", CONFIG_DOCTOR],
       ["husky-pre-commit-missing", CONFIG_DOCTOR],
       ["husky-commit-msg-missing", CONFIG_DOCTOR],
       ["husky-pre-push-missing", null],

package/scripts/harness/setup/skill-deployer.ts

@@ -7,7 +7,7 @@
 // Note: import.meta.url を使わず、呼び出し元 (main.ts) がパスを解決して渡す設計。
 
 import { promises as fs } from "node:fs";
-import { join } from "node:path";
+import { dirname, join } from "node:path";
 
 const HARNESS_VERSION_FILE = ".harness-version";
 const SKILLS_SOURCE_DIR = "skills";
@@ -18,6 +18,8 @@ const CODEX_SKILLS_LINK_DIR = ".codex";
 const HARNESS_CONFIG_FILE = "phasegate.config.json";
 const HOOKS_TEMPLATE_DIR = join("templates", ".claude");
 const HOOKS_TARGET_DIR = ".claude";
+const DEFAULT_PRINCIPLES_DOCS = join("docs", "principles");
+const DEFAULT_FOLDER_RULES_DOC = join("docs", "folder_management_rules.md");
 
 // ── Skill Category Map ──
 
@@ -516,33 +518,55 @@ export interface DeployDesignDocsResult {
   skippedFiles: string[];
 }
 
+interface DesignDocsPathConfig {
+  readonly principlesDocs: string;
+  readonly folderRulesDoc: string;
+}
+
+async function resolveDesignDocsPathConfig(projectRoot: string): Promise<DesignDocsPathConfig> {
+  try {
+    const raw = await fs.readFile(join(projectRoot, HARNESS_CONFIG_FILE), "utf-8");
+    const config = JSON.parse(raw) as { paths?: { principlesDocs?: unknown; folderRulesDoc?: unknown } };
+    const principlesDocs =
+      typeof config.paths?.principlesDocs === "string" && config.paths.principlesDocs.length > 0
+        ? config.paths.principlesDocs
+        : DEFAULT_PRINCIPLES_DOCS;
+    const folderRulesDoc =
+      typeof config.paths?.folderRulesDoc === "string" && config.paths.folderRulesDoc.length > 0
+        ? config.paths.folderRulesDoc
+        : DEFAULT_FOLDER_RULES_DOC;
+    return { principlesDocs, folderRulesDoc };
+  } catch {
+    return { principlesDocs: DEFAULT_PRINCIPLES_DOCS, folderRulesDoc: DEFAULT_FOLDER_RULES_DOC };
+  }
+}
+
 export async function deployDesignDocs(harnessRoot: string, projectRoot: string): Promise<DeployDesignDocsResult> {
   const copiedFiles: string[] = [];
   const skippedFiles: string[] = [];
-  const docsTargetDir = join(projectRoot, "docs");
-  const principlesTargetDir = join(docsTargetDir, "principles");
+  const pathConfig = await resolveDesignDocsPathConfig(projectRoot);
+  const principlesTargetDir = join(projectRoot, pathConfig.principlesDocs);
 
-  await fs.mkdir(docsTargetDir, { recursive: true });
+  await fs.mkdir(join(projectRoot, dirname(pathConfig.folderRulesDoc)), { recursive: true });
   await fs.mkdir(principlesTargetDir, { recursive: true });
 
-  const folderRulesRelativePath = join("docs", "folder_management_rules.md");
-  const folderRulesSource = join(harnessRoot, folderRulesRelativePath);
-  const folderRulesTarget = join(projectRoot, folderRulesRelativePath);
+  const folderRulesSource = join(harnessRoot, DEFAULT_FOLDER_RULES_DOC);
+  const folderRulesTarget = join(projectRoot, pathConfig.folderRulesDoc);
 
   try {
     await fs.access(folderRulesTarget);
-    skippedFiles.push(folderRulesRelativePath);
+    skippedFiles.push(pathConfig.folderRulesDoc);
   } catch {
     try {
       await fs.access(folderRulesSource);
       await fs.copyFile(folderRulesSource, folderRulesTarget);
-      copiedFiles.push(folderRulesRelativePath);
+      copiedFiles.push(pathConfig.folderRulesDoc);
     } catch {
       // 配置元が存在しない場合はスキップ
     }
   }
 
-  const principlesSourceDir = join(harnessRoot, "docs", "principles");
+  const principlesSourceDir = join(harnessRoot, DEFAULT_PRINCIPLES_DOCS);
 
   try {
     const principleEntries = await fs.readdir(principlesSourceDir, { withFileTypes: true });
@@ -552,7 +576,7 @@ export async function deployDesignDocs(harnessRoot: string, projectRoot: string)
       .sort();
 
     for (const principleFile of principleFiles) {
-      const relativePath = join("docs", "principles", principleFile);
+      const relativePath = join(pathConfig.principlesDocs, principleFile);
       const sourcePath = join(principlesSourceDir, principleFile);
       const targetPath = join(projectRoot, relativePath);