pdbe-molstar 3.2.1-beta.3 → 3.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (94) hide show
  1. package/README.md +3 -1
  2. package/build/pdbe-molstar-component.js +3 -3
  3. package/build/pdbe-molstar-light.css +2 -3
  4. package/build/pdbe-molstar-plugin.js +2 -2
  5. package/build/pdbe-molstar-plugin.js.LICENSE.txt +1 -1
  6. package/build/pdbe-molstar.css +2 -3
  7. package/lib/alphafold-transparency.js +61 -118
  8. package/lib/custom-events.js +30 -31
  9. package/lib/domain-annotations/behavior.js +22 -26
  10. package/lib/domain-annotations/color.d.ts +9 -5
  11. package/lib/domain-annotations/color.js +54 -53
  12. package/lib/domain-annotations/prop.d.ts +4 -1
  13. package/lib/domain-annotations/prop.js +73 -81
  14. package/lib/extensions/{foldseek.d.ts → foldseek/index.d.ts} +8 -2
  15. package/lib/extensions/foldseek/index.js +202 -0
  16. package/lib/extensions/state-gallery/behavior.d.ts +30 -0
  17. package/lib/extensions/state-gallery/behavior.js +64 -0
  18. package/lib/extensions/state-gallery/config.d.ts +21 -0
  19. package/lib/extensions/state-gallery/config.js +31 -0
  20. package/lib/extensions/state-gallery/manager.d.ts +125 -0
  21. package/lib/extensions/state-gallery/manager.js +309 -0
  22. package/lib/extensions/state-gallery/titles.d.ts +26 -0
  23. package/lib/extensions/state-gallery/titles.js +68 -0
  24. package/lib/extensions/state-gallery/ui.d.ts +31 -0
  25. package/lib/extensions/state-gallery/ui.js +162 -0
  26. package/lib/helpers.d.ts +65 -9
  27. package/lib/helpers.js +280 -193
  28. package/lib/index.d.ts +1 -2
  29. package/lib/index.js +3 -4
  30. package/lib/labels.js +22 -25
  31. package/lib/loci-details.d.ts +2 -2
  32. package/lib/loci-details.js +34 -36
  33. package/lib/pdbe-molstar-component-build.js +1 -1
  34. package/lib/plugin-custom-state.d.ts +40 -0
  35. package/lib/plugin-custom-state.js +62 -1
  36. package/lib/sifts-mapping.js +30 -33
  37. package/lib/sifts-mappings-behaviour.js +28 -33
  38. package/lib/spec-from-html.js +24 -23
  39. package/lib/spec.d.ts +9 -2
  40. package/lib/spec.js +20 -22
  41. package/lib/styles/pdbe-molstar/_index.scss +179 -0
  42. package/lib/styles/pdbe-molstar-dark.scss +2 -0
  43. package/lib/styles/pdbe-molstar-light.scss +2 -0
  44. package/lib/subscribe-events.js +28 -28
  45. package/lib/superposition-export.js +109 -149
  46. package/lib/superposition-focus-representation.js +78 -111
  47. package/lib/superposition-sifts-mapping.js +53 -58
  48. package/lib/superposition.js +530 -715
  49. package/lib/ui/alphafold-superposition.d.ts +2 -3
  50. package/lib/ui/alphafold-superposition.js +102 -130
  51. package/lib/ui/alphafold-tranparency.js +34 -49
  52. package/lib/ui/annotation-controls.d.ts +19 -9
  53. package/lib/ui/annotation-controls.js +127 -120
  54. package/lib/ui/annotation-row-controls.d.ts +5 -4
  55. package/lib/ui/annotation-row-controls.js +28 -34
  56. package/lib/ui/custom-controls.d.ts +9 -0
  57. package/lib/ui/custom-controls.js +17 -0
  58. package/lib/ui/export-superposition.js +36 -53
  59. package/lib/ui/icons.d.ts +18 -0
  60. package/lib/ui/icons.js +29 -0
  61. package/lib/ui/left-panel/core.d.ts +36 -0
  62. package/lib/ui/left-panel/core.js +120 -0
  63. package/lib/ui/left-panel/pdbe-left-panel.d.ts +5 -0
  64. package/lib/ui/left-panel/pdbe-left-panel.js +30 -0
  65. package/lib/ui/left-panel/tabs.d.ts +86 -0
  66. package/lib/ui/left-panel/tabs.js +149 -0
  67. package/lib/ui/overlay.d.ts +3 -0
  68. package/lib/ui/overlay.js +34 -0
  69. package/lib/ui/pdbe-screenshot-controls.js +57 -81
  70. package/lib/ui/pdbe-structure-controls.js +37 -60
  71. package/lib/ui/pdbe-viewport-controls.js +19 -25
  72. package/lib/ui/pdbe-viewport.d.ts +7 -0
  73. package/lib/ui/pdbe-viewport.js +22 -0
  74. package/lib/ui/segment-tree.js +459 -596
  75. package/lib/ui/split-ui/components.d.ts +17 -0
  76. package/lib/ui/split-ui/components.js +22 -0
  77. package/lib/ui/split-ui/split-ui.d.ts +17 -0
  78. package/lib/ui/split-ui/split-ui.js +79 -0
  79. package/lib/ui/superposition-components.js +218 -271
  80. package/lib/ui/symmetry-annotation-controls.d.ts +7 -6
  81. package/lib/ui/symmetry-annotation-controls.js +154 -212
  82. package/lib/viewer.d.ts +33 -13
  83. package/lib/viewer.js +781 -1110
  84. package/package.json +14 -14
  85. package/lib/extensions/foldseek.js +0 -163
  86. package/lib/index(light).d.ts +0 -4
  87. package/lib/index(light).js +0 -9
  88. package/lib/overlay.d.ts +0 -16
  89. package/lib/overlay.js +0 -59
  90. package/lib/styles/index.scss +0 -61
  91. package/lib/ui/pdbe-left-panel.d.ts +0 -18
  92. package/lib/ui/pdbe-left-panel.js +0 -146
  93. package/lib/ui/superposition-viewport.d.ts +0 -4
  94. package/lib/ui/superposition-viewport.js +0 -23
package/README.md CHANGED
@@ -1,5 +1,7 @@
1
1
  # PDBe Molstar
2
2
 
3
+ [![Published on NPM](https://img.shields.io/npm/v/pdbe-molstar.svg)](https://www.npmjs.com/package/pdbe-molstar)
4
+
3
5
  PDBe implementation of [Mol\* (/'mol-star/)](https://github.com/molstar/molstar)
4
6
 
5
7
  **Refer [PDBe Molstar Wiki](https://github.com/PDBeurope/pdbe-molstar/wiki) for detailed documentation and examples**
@@ -32,7 +34,7 @@ npm run watch
32
34
  - Use a version number like "1.2.3" for proper releases
33
35
  - Ensure `npm install && npm run lint && npm run rebuild` works locally
34
36
  - Update `CHANGELOG.md`
35
- - Git commit and push
37
+ - Git commit and push (commit message e.g. "Version 1.2.3")
36
38
  - Create a git tag matching the version with prepended "v" (e.g. "v1.2.3")
37
39
  - The GitHub repo will automatically be mirrored to EBI GitLab (might take up to 1 hour)
38
40
  - CICD pipeline in EBI GitLab will automatically publish the package to npm (https://www.npmjs.com/package/pdbe-molstar)