pdbe-molstar 3.2.1-beta.2 → 3.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (108) hide show
  1. package/README.md +2 -2
  2. package/build/pdbe-molstar-component.js +3 -3
  3. package/build/pdbe-molstar-light.css +2 -3
  4. package/build/pdbe-molstar-plugin.js +2 -2
  5. package/build/pdbe-molstar-plugin.js.LICENSE.txt +1 -1
  6. package/build/pdbe-molstar.css +2 -3
  7. package/lib/alphafold-transparency.d.ts +3 -3
  8. package/lib/alphafold-transparency.js +62 -120
  9. package/lib/custom-events.d.ts +1 -1
  10. package/lib/custom-events.js +30 -31
  11. package/lib/domain-annotations/behavior.d.ts +1 -1
  12. package/lib/domain-annotations/behavior.js +22 -26
  13. package/lib/domain-annotations/color.d.ts +12 -8
  14. package/lib/domain-annotations/color.js +54 -53
  15. package/lib/domain-annotations/prop.d.ts +10 -7
  16. package/lib/domain-annotations/prop.js +73 -81
  17. package/lib/extensions/{foldseek.d.ts → foldseek/index.d.ts} +9 -3
  18. package/lib/extensions/foldseek/index.js +202 -0
  19. package/lib/extensions/state-gallery/behavior.d.ts +27 -0
  20. package/lib/extensions/state-gallery/behavior.js +63 -0
  21. package/lib/extensions/state-gallery/config.d.ts +17 -0
  22. package/lib/extensions/state-gallery/config.js +28 -0
  23. package/lib/extensions/state-gallery/manager.d.ts +96 -0
  24. package/lib/extensions/state-gallery/manager.js +292 -0
  25. package/lib/extensions/state-gallery/ui.d.ts +23 -0
  26. package/lib/extensions/state-gallery/ui.js +154 -0
  27. package/lib/helpers.d.ts +84 -22
  28. package/lib/helpers.js +308 -185
  29. package/lib/index.d.ts +3 -179
  30. package/lib/index.js +6 -1231
  31. package/lib/labels.d.ts +1 -1
  32. package/lib/labels.js +22 -25
  33. package/lib/loci-details.d.ts +4 -4
  34. package/lib/loci-details.js +34 -36
  35. package/lib/pdbe-molstar-component-build.js +1 -1
  36. package/lib/plugin-custom-state.d.ts +38 -9
  37. package/lib/plugin-custom-state.js +59 -1
  38. package/lib/sifts-mapping.d.ts +3 -3
  39. package/lib/sifts-mapping.js +30 -33
  40. package/lib/sifts-mappings-behaviour.d.ts +1 -1
  41. package/lib/sifts-mappings-behaviour.js +31 -36
  42. package/lib/spec-from-html.js +24 -23
  43. package/lib/spec.d.ts +36 -12
  44. package/lib/spec.js +43 -17
  45. package/lib/styles/pdbe-molstar/_index.scss +172 -0
  46. package/lib/styles/pdbe-molstar-dark.scss +2 -0
  47. package/lib/styles/pdbe-molstar-light.scss +2 -0
  48. package/lib/subscribe-events.js +28 -28
  49. package/lib/superposition-export.d.ts +1 -1
  50. package/lib/superposition-export.js +109 -149
  51. package/lib/superposition-focus-representation.d.ts +3 -3
  52. package/lib/superposition-focus-representation.js +78 -111
  53. package/lib/superposition-sifts-mapping.d.ts +5 -5
  54. package/lib/superposition-sifts-mapping.js +53 -58
  55. package/lib/superposition.d.ts +7 -4
  56. package/lib/superposition.js +538 -760
  57. package/lib/ui/alphafold-superposition.d.ts +6 -7
  58. package/lib/ui/alphafold-superposition.js +102 -130
  59. package/lib/ui/alphafold-tranparency.d.ts +2 -2
  60. package/lib/ui/alphafold-tranparency.js +34 -49
  61. package/lib/ui/annotation-controls.d.ts +20 -10
  62. package/lib/ui/annotation-controls.js +127 -120
  63. package/lib/ui/annotation-row-controls.d.ts +7 -6
  64. package/lib/ui/annotation-row-controls.js +28 -34
  65. package/lib/ui/custom-controls.d.ts +9 -0
  66. package/lib/ui/custom-controls.js +17 -0
  67. package/lib/ui/export-superposition.d.ts +1 -1
  68. package/lib/ui/export-superposition.js +36 -53
  69. package/lib/ui/icons.d.ts +18 -0
  70. package/lib/ui/icons.js +29 -0
  71. package/lib/ui/left-panel/core.d.ts +36 -0
  72. package/lib/ui/left-panel/core.js +120 -0
  73. package/lib/ui/left-panel/pdbe-left-panel.d.ts +5 -0
  74. package/lib/ui/left-panel/pdbe-left-panel.js +30 -0
  75. package/lib/ui/left-panel/tabs.d.ts +86 -0
  76. package/lib/ui/left-panel/tabs.js +149 -0
  77. package/lib/ui/overlay.d.ts +3 -0
  78. package/lib/ui/overlay.js +34 -0
  79. package/lib/ui/pdbe-screenshot-controls.d.ts +2 -2
  80. package/lib/ui/pdbe-screenshot-controls.js +57 -81
  81. package/lib/ui/pdbe-structure-controls.d.ts +1 -1
  82. package/lib/ui/pdbe-structure-controls.js +37 -60
  83. package/lib/ui/pdbe-viewport-controls.d.ts +1 -1
  84. package/lib/ui/pdbe-viewport-controls.js +20 -24
  85. package/lib/ui/pdbe-viewport.d.ts +7 -0
  86. package/lib/ui/pdbe-viewport.js +22 -0
  87. package/lib/ui/segment-tree.d.ts +4 -4
  88. package/lib/ui/segment-tree.js +459 -616
  89. package/lib/ui/split-ui/components.d.ts +17 -0
  90. package/lib/ui/split-ui/components.js +22 -0
  91. package/lib/ui/split-ui/split-ui.d.ts +17 -0
  92. package/lib/ui/split-ui/split-ui.js +79 -0
  93. package/lib/ui/superposition-components.d.ts +1 -1
  94. package/lib/ui/superposition-components.js +218 -271
  95. package/lib/ui/symmetry-annotation-controls.d.ts +12 -11
  96. package/lib/ui/symmetry-annotation-controls.js +154 -212
  97. package/lib/{index(light).d.ts → viewer.d.ts} +48 -27
  98. package/lib/viewer.js +932 -0
  99. package/package.json +12 -12
  100. package/lib/extensions/foldseek.js +0 -163
  101. package/lib/index(light).js +0 -1233
  102. package/lib/overlay.d.ts +0 -16
  103. package/lib/overlay.js +0 -59
  104. package/lib/overlay.scss +0 -50
  105. package/lib/ui/pdbe-left-panel.d.ts +0 -18
  106. package/lib/ui/pdbe-left-panel.js +0 -146
  107. package/lib/ui/superposition-viewport.d.ts +0 -4
  108. package/lib/ui/superposition-viewport.js +0 -23
package/README.md CHANGED
@@ -30,9 +30,9 @@ npm run watch
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  - Bump version in `package.json` using semantic versioning
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  - Use a version number like "1.2.3-beta.1" for development versions (to be used in development environment wwwdev.ebi.ac.uk)
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  - Use a version number like "1.2.3" for proper releases
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- - Ensure install, lint, and rebuild works locally
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+ - Ensure `npm install && npm run lint && npm run rebuild` works locally
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  - Update `CHANGELOG.md`
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- - Git commit and push
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+ - Git commit and push (commit message e.g. "Version 1.2.3")
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  - Create a git tag matching the version with prepended "v" (e.g. "v1.2.3")
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  - The GitHub repo will automatically be mirrored to EBI GitLab (might take up to 1 hour)
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  - CICD pipeline in EBI GitLab will automatically publish the package to npm (https://www.npmjs.com/package/pdbe-molstar)