pcl-mcp 0.2.5 → 0.3.0

package/README.md

@@ -1,17 +1,24 @@
+<div align="center">
+
 # PCL — Product Context Layer
 
 **Give AI coding agents persistent, structured knowledge of your product.**
 
-Instead of re-explaining your personas, journeys, and architecture decisions every session, PCL serves them via MCP on demand. Any agent (Claude Code, Cursor, Windsurf) queries exactly what it needs, when it needs it.
-
-## Quick Start
+[![npm version](https://img.shields.io/npm/v/pcl-mcp?color=brightgreen)](https://www.npmjs.com/package/pcl-mcp)
+[![npm downloads](https://img.shields.io/npm/dm/pcl-mcp)](https://www.npmjs.com/package/pcl-mcp)
+[![Node >=22](https://img.shields.io/badge/node-%3E%3D22-blue)](https://nodejs.org)
+[![MIT License](https://img.shields.io/badge/license-MIT-green)](LICENSE)
 
 ```bash
-npm install pcl-mcp
-npx pcl init
-# add MCP config (see Agent Configuration below), then start a new agent session
+npx pcl-mcp init
 ```
 
+</div>
+
+Instead of re-explaining your personas, journeys, and architecture decisions every session, PCL serves them via MCP on demand. Any agent (Claude Code, Cursor, Windsurf) queries exactly what it needs, when it needs it.
+
+---
+
 ## Why PCL?
 
 **Without PCL**, every coding session starts from scratch:
@@ -34,21 +41,40 @@ You ask your agent: *"Build the checkout flow"*
 
 **With PCL:** The agent auto-loads critical billing rules at session start (~200 tokens). When it starts the checkout feature, it pulls the relevant persona, fetches the journey steps, and checks the spec's acceptance criteria — all on-demand, only what's needed. Every session, automatically.
 
+---
+
+## Quick Start
+
+```bash
+npm install pcl-mcp
+npx pcl init            # prompts before adding example files, sets up CLAUDE.md
+# add MCP config (see Agent Configuration below), then start a new agent session
+```
+
+---
+
 ## Stack
 
 | Layer | Technology | Why |
 |---|---|---|
 | Protocol | MCP (stdio) | Universal — works with every major agent |
 | Storage | SQLite + FTS5 | Zero infra, git-friendly, offline |
-| Keyword search | BM25 via FTS5 | Best-in-class for exact term matching |
-| Semantic search | `all-MiniLM-L6-v2` (local) | 23MB, zero API cost, ~3ms/doc |
-| Hybrid fusion | Reciprocal Rank Fusion (k=60) | Better than either alone, no tuning |
-| Validation | Zod schemas | Agents rely on predictable frontmatter |
+| Keyword search | BM25 via FTS5 (title-weighted 10×) | Best-in-class for exact terms, IDs, proper nouns |
+| Semantic search | `all-mpnet-base-v2` (local, 768d) | Higher quality than MiniLM, zero API cost, ~3ms/doc |
+| Embedding strategy | Split body + title embeddings | Separate semantic channels for body and title matching |
+| Hybrid fusion | Adaptive RRF (corpus-size-aware k) | Better recall on both small and large corpora |
+| Score filtering | 15% gap threshold | Prevents low-quality tail results from surfacing |
+| Cross-references | Auto frontmatter link resolution | Pulls related files into results automatically |
+| Validation | Zod schemas | Agents get predictable, parseable frontmatter |
 | File watching | Chokidar v4 | Live reindex on save |
 
+---
+
 ## Prerequisites
 
-- **Node.js >= 22** (required — PCL uses modern Node APIs)
+**Node.js >= 22** (required — PCL uses modern Node APIs)
+
+---
 
 ## Install
 
@@ -59,6 +85,8 @@ npx pcl init            # creates ./product with templates
 
 Also available on GitHub Packages as `@michaelgorski/pcl-mcp`.
 
+---
+
 ## Import existing docs
 
 If you already have markdown documentation in your repo, PCL can scan, classify, and import it automatically:
@@ -77,8 +105,12 @@ The scanner:
 
 Supported classifications: **persona**, **journey**, **spec**, **decision**, **domain**, **product**
 
+---
+
 ## Agent configuration
 
+Works with any MCP-compatible agent. Configuration examples below.
+
 ### Claude Code — `.claude/mcp.json`
 ```json
 {
@@ -113,6 +145,8 @@ Supported classifications: **persona**, **journey**, **spec**, **decision**, **d
 }
 ```
 
+---
+
 ## File structure
 
 ```
@@ -131,19 +165,23 @@ Supported classifications: **persona**, **journey**, **spec**, **decision**, **d
   .pcl.db                 ← SQLite index (auto-generated, gitignore this)
 ```
 
+---
+
 ## Tools available to agents
 
 | Tool | Params | Description |
 |---|---|---|
 | `pcl_product_summary` | — | Load the product north-star document. Call at session start. |
-| `pcl_get_persona(id)` | `id`: persona ID | Get a user persona by ID. Call before any user-facing feature. |
-| `pcl_get_journey(id)` | `id`: journey ID | Get a user journey by ID including step-by-step detail. |
-| `pcl_get_spec(id)` | `id`: spec ID | Get a feature spec by ID including acceptance criteria. |
-| `pcl_get_decision(id)` | `id`: decision ID | Get an architecture decision record (ADR) by ID. |
-| `pcl_get_domain(id)` | `id`: domain ID or `"*critical"` | Get domain rules by ID. Pass `"*critical"` to load all critical rules. |
-| `pcl_list({ type })` | `type`: `"personas"` \| `"journeys"` \| `"specs"` \| `"decisions"` \| `"domain"` | List all files of a given type with IDs, titles, and summaries. |
-| `pcl_search({ query })` | `query`, `mode?` (`"hybrid"` \| `"semantic"` \| `"keyword"`), `types?`, `top_k?` | Hybrid semantic + keyword search across all product files. |
-| `pcl_related(id)` | `id`: source file ID, `top_k?` | Find files semantically related to a given file ID. |
+| `pcl_get_persona` | `id` | Get a user persona by ID. Call before any user-facing feature. |
+| `pcl_get_journey` | `id` | Get a user journey by ID including step-by-step detail. |
+| `pcl_get_spec` | `id` | Get a feature spec by ID including acceptance criteria. |
+| `pcl_get_decision` | `id` | Get an architecture decision record (ADR) by ID. |
+| `pcl_get_domain` | `id` or `"*critical"` | Get domain rules by ID. Pass `"*critical"` to load all critical rules. |
+| `pcl_list` | `type`: `"personas"` \| `"journeys"` \| `"specs"` \| `"decisions"` \| `"domain"` | List all files of a given type with IDs, titles, and summaries. |
+| `pcl_search` | `query`, `mode?` (`"hybrid"` \| `"semantic"` \| `"keyword"`), `types?`, `top_k?` | Hybrid semantic + keyword search across all product files. |
+| `pcl_related` | `id`, `top_k?` | Find files semantically related to a given file ID. |
+
+---
 
 ## Prompts & Resources
 
@@ -153,25 +191,92 @@ In addition to tools, PCL exposes MCP prompts and resources:
 
 **Resources: `pcl://files/{type}/{id}`** — Each indexed file is available as an MCP resource. Agents can browse and read individual files directly via the resource URI (e.g., `pcl://files/persona/example-user`).
 
+---
+
 ## How hybrid search works
 
+PCL runs three parallel retrieval signals and fuses them with Reciprocal Rank Fusion:
+
 ```
 query: "what does Max find frustrating about onboarding"
 
-BM25 (FTS5):      [persona-max, journey-onboarding, spec-magic-link, ...]
-                   ↓ ranked by term frequency + IDF
+BM25 (FTS5, title-weighted 10×):
+  → persona-max, journey-onboarding, spec-magic-link
+  ↓ ranked by bm25(title=10×, body=1×) — exact terms, IDs, proper nouns
+
+Semantic — body embedding (all-mpnet-base-v2, 768d):
+  → journey-onboarding, persona-max, domain-core-rules
+  ↓ cosine similarity on full-text embedding
 
-Cosine similarity: [journey-onboarding, persona-max, domain-core-rules, ...]
-                   ↓ ranked by embedding dot product (MiniLM-L6-v2)
+Semantic — title embedding (all-mpnet-base-v2, 768d):
+  → persona-max, journey-onboarding, spec-onboarding-ux
+  ↓ cosine similarity on title + summary embedding
 
-RRF fusion:        score(d) = Σ 1 / (60 + rank(d))
-                   ↓ combines both rankings without weight tuning
+Adaptive RRF (k = corpus_size / 10):
+  score(d) = Σ 1 / (k + rank(d))   fused across all three lists
 
-Result:            1. journey-onboarding (0.94)
-                   2. persona-max (0.87)
-                   3. spec-onboarding-ux (0.71)
+Score gap filter (15% threshold):
+  Drops results below 0.15 × top_score — removes noise
+
+Cross-reference resolution:
+  journey-onboarding.frontmatter.persona = "max"
+  → auto-includes persona-max even if it ranked outside top-k
+
+Result:  1. journey-onboarding  (0.94)
+         2. persona-max         (0.87)
+         3. spec-onboarding-ux  (0.71)
 ```
 
+**Why split embeddings?** Body and title carry different semantic signals. A query like *"checkout persona"* should match a persona file by title even if its body content is mostly demographic data. Indexing them separately gives the fusion step two distinct semantic channels rather than one diluted one.
+
+**Why adaptive RRF k?** Fixed k=60 over-smooths rankings on small corpora (10–20 files). Corpus-aware k scales down on small collections to let strong matches separate from weak ones.
+
+---
+
+## Testing & Benchmarks
+
+PCL ships with a full test suite and a multi-dimensional benchmark framework.
+
+### Tests
+
+```bash
+npm test            # run all tests (vitest)
+npm run test:watch  # watch mode
+```
+
+Six test suites cover the full stack:
+
+| Suite | Coverage |
+|---|---|
+| `db.test.ts` | SQLite operations, FTS5 queries, embedding storage |
+| `embeddings.test.ts` | Embedding generation, cache hits, dimension checks |
+| `indexer.test.ts` | File discovery, schema extraction, change detection |
+| `schemas.test.ts` | Zod frontmatter validation for all file types |
+| `search.test.ts` | Hybrid search, RRF, multi-hop decomposition, cross-refs |
+| `tools.test.ts` | MCP tool handlers, response formatting, error paths |
+
+### Benchmarks
+
+```bash
+npm run bench           # all benchmarks
+npm run bench:perf      # latency benchmarks (search + embedding speed)
+npm run bench:quality   # search quality: Precision@k, Recall@k, NDCG, MRR
+npm run bench:tokens    # token efficiency across search modes
+npm run bench:ablation  # hybrid vs keyword-only vs semantic-only comparison
+npm run bench:ai        # Claude-judged result quality (requires ANTHROPIC_API_KEY)
+npm run bench:report    # generate markdown report from results
+```
+
+| Suite | Measures |
+|---|---|
+| Performance | Search + embedding latency (p50/p95) |
+| Search quality | Precision@k, Recall@k, NDCG, MRR on labeled corpus |
+| Token efficiency | Tokens consumed per query across search modes |
+| Ablation | Quality delta: hybrid vs keyword-only vs semantic-only |
+| AI quality | Claude-judged relevance score for top-k results |
+
+---
+
 ## Human workflow
 
 The system is only as good as what you put in. Discipline:
@@ -184,12 +289,16 @@ The system is only as good as what you put in. Discipline:
 
 The agent does the rest.
 
+---
+
 ## Gitignore
 
 ```gitignore
 product/.pcl.db      # SQLite index — auto-regenerated
 ```
 
+---
+
 ## License
 
 MIT

package/dist/bin/pcl.js

@@ -265,24 +265,31 @@ async function init() {
     }
     let created = 0;
     let skipped = 0;
-    for (const [rel, content] of Object.entries(TEMPLATES)) {
-        // Skip templates for categories already covered by scan imports
-        const category = templateTypeMap[rel];
-        if (category && coveredTypes.has(category)) {
-            console.log(`  ↷  ${rel} (category covered by scan, skipped)`);
-            skipped++;
-            continue;
-        }
-        const dest = join(productDir, rel);
-        try {
-            await access(dest, constants.F_OK);
-            console.log(`  ↷  ${rel} (exists, skipped)`);
-            skipped++;
-        }
-        catch {
-            await writeFile(dest, content, "utf8");
-            console.log(`  ✓  ${rel}`);
-            created++;
+    const addExamples = await promptYesNo("Scaffold example files (product, personas, journeys, specs, decisions, domain)?");
+    if (!addExamples) {
+        console.log(`  ↷  Example files skipped`);
+        skipped += Object.keys(TEMPLATES).length;
+    }
+    else {
+        for (const [rel, content] of Object.entries(TEMPLATES)) {
+            // Skip templates for categories already covered by scan imports
+            const category = templateTypeMap[rel];
+            if (category && coveredTypes.has(category)) {
+                console.log(`  ↷  ${rel} (category covered by scan, skipped)`);
+                skipped++;
+                continue;
+            }
+            const dest = join(productDir, rel);
+            try {
+                await access(dest, constants.F_OK);
+                console.log(`  ↷  ${rel} (exists, skipped)`);
+                skipped++;
+            }
+            catch {
+                await writeFile(dest, content, "utf8");
+                console.log(`  ✓  ${rel}`);
+                created++;
+            }
         }
     }
     // Write CLAUDE.md bridge
@@ -422,10 +429,16 @@ ${BRIDGE_END}`;
     }
     console.log(`\nDone! Created: ${created}, skipped: ${skipped}`);
     console.log("\nNext steps:");
-    console.log("  1. Edit product/product.md with your actual product details");
-    console.log("  2. Rename and fill in the example persona, journey, and spec files");
-    console.log("  3. Add your MCP server config (see README)");
-    console.log("  4. Start a new agent session — PCL loads automatically\n");
+    if (addExamples) {
+        console.log("  1. Edit product/product.md with your actual product details");
+        console.log("  2. Rename and fill in the example persona, journey, and spec files");
+        console.log("  3. Add your MCP server config (see README)");
+        console.log("  4. Start a new agent session — PCL loads automatically\n");
+    }
+    else {
+        console.log("  1. Add your MCP server config (see README)");
+        console.log("  2. Start a new agent session — PCL loads automatically\n");
+    }
 }
 // ─── Status ──────────────────────────────────────────────────────────────────
 /** Count .md files on disk per subdirectory (no DB needed) */
@@ -533,7 +546,7 @@ function printHelp() {
 pcl — Product Context Layer CLI (v${version})
 
 Commands:
-  init [dir]              Scaffold /product folder with templates (default: ./product)
+  init [dir]              Set up PCL — prompts before adding example files (default: ./product)
   init --scan [dir]       Scan repo for existing .md files, import, then scaffold remaining templates
   init --scan-only [dir]  Scan and import only, don't scaffold templates
   serve                   Start the MCP server (reads --product-dir flag)

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "pcl-mcp",
-  "version": "0.2.5",
+  "version": "0.3.0",
   "description": "Product Context Layer — MCP server for AI-assisted product development",
   "type": "module",
   "main": "./dist/src/server.js",