npm - papersearch - Versions diffs - 0.4.2 → 0.4.3 - Mend

papersearch 0.4.2 → 0.4.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (151) hide show

package/dist/capabilities/pdf-discovery/tiers/unpaywall.js CHANGED Viewed

@@ -1,3 +1,4 @@
+import { normalizeArxivId } from '../../../infrastructure/arxiv.js';
 import { downloadPdfFromUrl, safeFilename } from '../../../infrastructure/pdf/PdfDownload.js';
 import { oaHostPolicy } from '../oaHosts.js';
 const CANDIDATE_TIMEOUT_MS = 30_000;
@@ -12,7 +13,7 @@ export function createUnpaywallTier() {
 /**
  * Tries Unpaywall's OA locations in order. Copies on hosts that refuse plain
  * HTTP are not attempted here: they are reported as browser_only and left to
- * the browser stage. arXiv copies are not used.
+ * the browser stage. arXiv copies are deferred to the final preprint stage.
  */
 async function tryUnpaywall(context) {
     if (!context.doi) {
@@ -32,7 +33,15 @@ async function tryUnpaywall(context) {
         let tried = 0;
         // A published copy, even one only a browser can fetch, beats an accepted or
         // submitted manuscript: earlier versions are used only when none exists.
-        const usable = candidates.filter((candidate) => oaHostPolicy(candidate.url) !== 'excluded');
+        const usable = candidates.filter((candidate) => {
+            const policy = oaHostPolicy(candidate.url);
+            if (policy === 'preprint') {
+                const id = normalizeArxivId(candidate.url);
+                if (id)
+                    (context.preprintIds ||= []).push(id);
+            }
+            return policy !== 'excluded' && policy !== 'preprint';
+        });
         const publishedOnly = usable.some((candidate) => candidate.version === 'publishedVersion');
         for (const candidate of usable) {
             const policy = oaHostPolicy(candidate.url);
@@ -67,7 +76,7 @@ async function tryUnpaywall(context) {
         if (errors.length > 0) {
             return { status: 'error', message: errors.join('; ') };
         }
-        return { status: 'skipped', message: 'No usable OA PDF location (arXiv copies are not used).' };
+        return { status: 'skipped', message: 'No usable published OA PDF location; arXiv is deferred to the final preprint stage.' };
     }
     catch (error) {
         return { status: 'error', message: error?.message || String(error) };

package/dist/capabilities/pdf-discovery/tiers/unpaywall.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/capabilities/pdf-discovery/types.d.ts CHANGED Viewed

@@ -39,6 +39,8 @@ export interface DownloadStageRecord {
     trace?: Record<string, unknown>;
 }
 export interface DownloadWithFallbackOptions {
+    /** Internal shared candidates across the two batch phases; not a tool argument. */
+    preprintIds?: string[];
     source: string;
     paperId: string;
     doi?: string;
@@ -61,6 +63,10 @@ export interface DownloadWithFallbackOptions {
     content?: DownloadContent;
 }
 export interface DownloadWithFallbackResult {
+    /** Present when all earlier routes failed and an arXiv preprint was saved. */
+    version?: "preprint";
+    arxivId?: string;
+    publishedDoi?: string;
     status: "ok" | "error";
     path?: string;
     /** Present only when the saved full text is not a PDF (e.g. Springer TDM JATS XML). */

package/dist/capabilities/pdf-discovery/types.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/handleToolCall.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"handleToolCall.d.ts","sourceRoot":"","sources":["../../src/core/handleToolCall.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAChD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,8CAA8C,CAAC;AAqCjF,MAAM,WAAW,oBAAoB;IACnC,YAAY,CAAC,EAAE,YAAY,CAAC;CAC7B;AAofD,eAAO,MAAM,kBAAkB,UAAoC,CAAC;AAEpE,wBAAsB,cAAc,CAClC,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,OAAO,EAChB,SAAS,EAAE,SAAS,EACpB,YAAY,GAAE,oBAAyB;;;;;GAgBxC"}

package/dist/core/handleToolCall.js CHANGED Viewed

@@ -18,6 +18,18 @@ function jsonTextResponse(text) {
 }
 const TOOL_HANDLERS = {
     search_papers: async (args, searchers) => handleSearchPapers(args, searchers),
+    search_arxiv: async (args, searchers) => {
+        const { query, maxResults, category, author, year, sortBy, sortOrder } = args;
+        const results = await searchers.arxiv.search(query, {
+            maxResults,
+            category,
+            author,
+            year,
+            sortBy,
+            sortOrder,
+        });
+        return jsonTextResponse(`Found ${results.length} arXiv papers.\n\n${JSON.stringify(results.map((paper) => PaperFactory.toDict(paper)), null, 2)}`);
+    },
     search_webofscience: async (args, searchers) => {
         const { query, maxResults, year, author, journal, sortBy, sortOrder } = args;
         if (!process.env.WOS_API_KEY) {

package/dist/core/handleToolCall.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/schemas.d.ts CHANGED Viewed

@@ -9,6 +9,31 @@ export { DownloadBatchSchema, DownloadPaperSchema, DownloadWithFallbackSchema };
 export { GetPaperByDoiSchema, SearchPapersSchema };
 export { QueryJournalMetricsSchema };
 export { SearchSemanticSnippetsSchema };
+export declare const SearchArxivSchema: z.ZodObject<{
+    query: z.ZodString;
+    maxResults: z.ZodDefault<z.ZodOptional<z.ZodNumber>>;
+    category: z.ZodOptional<z.ZodString>;
+    author: z.ZodOptional<z.ZodString>;
+    year: z.ZodOptional<z.ZodString>;
+    sortBy: z.ZodOptional<z.ZodEnum<["relevance", "date", "citations"]>>;
+    sortOrder: z.ZodOptional<z.ZodEnum<["asc", "desc"]>>;
+}, "strip", z.ZodTypeAny, {
+    maxResults: number;
+    query: string;
+    year?: string | undefined;
+    author?: string | undefined;
+    category?: string | undefined;
+    sortBy?: "relevance" | "date" | "citations" | undefined;
+    sortOrder?: "asc" | "desc" | undefined;
+}, {
+    query: string;
+    year?: string | undefined;
+    maxResults?: number | undefined;
+    author?: string | undefined;
+    category?: string | undefined;
+    sortBy?: "relevance" | "date" | "citations" | undefined;
+    sortOrder?: "asc" | "desc" | undefined;
+}>;
 export declare const SearchWebOfScienceSchema: z.ZodObject<{
     query: z.ZodString;
     maxResults: z.ZodDefault<z.ZodOptional<z.ZodNumber>>;
@@ -360,6 +385,6 @@ export declare const GetPlatformStatusSchema: z.ZodObject<{
 }, {
     validate?: boolean | undefined;
 }>;
-export type ToolName = string | 'search_papers' | 'search_webofscience' | 'search_pubmed' | 'search_biorxiv' | 'search_medrxiv' | 'search_semantic_scholar' | 'search_semantic_snippets' | 'get_paper_citations' | 'get_paper_references' | 'search_iacr' | 'download_paper' | 'search_google_scholar' | 'get_paper_by_doi' | 'search_scihub' | 'check_scihub_mirrors' | 'get_platform_status' | 'search_sciencedirect' | 'search_springer' | 'search_scopus' | 'search_crossref' | 'search_openalex' | 'search_unpaywall' | 'search_pmc' | 'search_europepmc' | 'search_core' | 'search_openaire' | 'download_with_fallback' | 'download_batch' | 'query_journal_metrics';
+export type ToolName = string | 'search_papers' | 'search_arxiv' | 'search_webofscience' | 'search_pubmed' | 'search_biorxiv' | 'search_medrxiv' | 'search_semantic_scholar' | 'search_semantic_snippets' | 'get_paper_citations' | 'get_paper_references' | 'search_iacr' | 'download_paper' | 'search_google_scholar' | 'get_paper_by_doi' | 'search_scihub' | 'check_scihub_mirrors' | 'get_platform_status' | 'search_sciencedirect' | 'search_springer' | 'search_scopus' | 'search_crossref' | 'search_openalex' | 'search_unpaywall' | 'search_pmc' | 'search_europepmc' | 'search_core' | 'search_openaire' | 'download_with_fallback' | 'download_batch' | 'query_journal_metrics';
 export declare function parseToolArgs(toolName: ToolName, args: unknown): any;
 //# sourceMappingURL=schemas.d.ts.map

package/dist/core/schemas.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/schemas.js CHANGED Viewed

@@ -13,6 +13,17 @@ export { QueryJournalMetricsSchema };
 export { SearchSemanticSnippetsSchema };
 const SortBySchema = z.enum(['relevance', 'date', 'citations']);
 const SortOrderSchema = z.enum(['asc', 'desc']);
+export const SearchArxivSchema = z
+    .object({
+    query: z.string().min(1),
+    maxResults: z.number().int().min(1).max(50).optional().default(10),
+    category: z.string().optional(),
+    author: z.string().optional(),
+    year: z.string().optional(),
+    sortBy: SortBySchema.optional(),
+    sortOrder: SortOrderSchema.optional()
+})
+    .strip();
 export const SearchWebOfScienceSchema = z
     .object({
     query: z.string().min(1),
@@ -183,6 +194,8 @@ export function parseToolArgs(toolName, args) {
     switch (toolName) {
         case 'search_papers':
             return SearchPapersSchema.parse(args);
+        case 'search_arxiv':
+            return SearchArxivSchema.parse(args);
         case 'search_webofscience':
             return SearchWebOfScienceSchema.parse(args);
         case 'search_pubmed':

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package/dist/core/searchers.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import type { ArxivSearcher } from '../platforms/ArxivSearcher.js';
 import type { BioRxivSearcher, MedRxivSearcher } from '../platforms/BioRxivSearcher.js';
 import type { CORESearcher } from '../platforms/CORESearcher.js';
 import type { CrossrefSearcher } from '../platforms/CrossrefSearcher.js';
@@ -18,6 +19,7 @@ import type { UnpaywallSearcher } from '../platforms/UnpaywallSearcher.js';
 import type { WebOfScienceSearcher } from '../platforms/WebOfScienceSearcher.js';
 export type SearcherMap = Record<string, PaperSource>;
 export interface Searchers extends SearcherMap {
+    arxiv: ArxivSearcher;
     webofscience: WebOfScienceSearcher;
     pubmed: PubMedSearcher;
     biorxiv: BioRxivSearcher;

package/dist/core/searchers.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/searchers.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/core/tools.d.ts.map CHANGED Viewed

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package/dist/core/tools.js CHANGED Viewed

@@ -6,6 +6,36 @@ import { DOWNLOAD_BATCH_TOOL, DOWNLOAD_PAPER_TOOL, DOWNLOAD_WITH_FALLBACK_TOOL }
 import { GET_PAPER_BY_DOI_TOOL, SEARCH_PAPERS_TOOL } from '../capabilities/metadata-search/tools.js';
 const BASE_TOOLS = [
     SEARCH_PAPERS_TOOL,
+    {
+        name: 'search_arxiv',
+        description: 'Search academic papers specifically from arXiv preprint server',
+        inputSchema: {
+            type: 'object',
+            properties: {
+                query: { type: 'string', description: 'Search query string' },
+                maxResults: {
+                    type: 'number',
+                    minimum: 1,
+                    maximum: 50,
+                    description: 'Maximum number of results to return'
+                },
+                category: { type: 'string', description: 'arXiv category filter (e.g., cs.AI, physics.gen-ph)' },
+                author: { type: 'string', description: 'Author name filter' },
+                year: { type: 'string', description: 'Year filter (e.g., "2023", "2020-2023")' },
+                sortBy: {
+                    type: 'string',
+                    enum: ['relevance', 'date', 'citations'],
+                    description: 'Sort results by field'
+                },
+                sortOrder: {
+                    type: 'string',
+                    enum: ['asc', 'desc'],
+                    description: 'Sort order: ascending or descending'
+                }
+            },
+            required: ['query']
+        }
+    },
     {
         name: 'search_webofscience',
         description: 'Search academic papers from Web of Science database',

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package/dist/infrastructure/arxiv.d.ts ADDED Viewed

@@ -0,0 +1,5 @@
+/** Parse only complete arXiv identifiers and official URLs, preserving versions. */
+export declare function normalizeArxivId(value: string | undefined): string | undefined;
+export declare function arxivPdfUrl(value: string): string | undefined;
+export declare function publishedDoi(value: string | undefined): string | undefined;
+//# sourceMappingURL=arxiv.d.ts.map

package/dist/infrastructure/arxiv.d.ts.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"arxiv.d.ts","sourceRoot":"","sources":["../../src/infrastructure/arxiv.ts"],"names":[],"mappings":"AAAA,oFAAoF;AACpF,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,GAAG,SAAS,CAiB9E;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAG7D;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,GAAG,SAAS,CAG1E"}

package/dist/infrastructure/arxiv.js ADDED Viewed

@@ -0,0 +1,36 @@
+/** Parse only complete arXiv identifiers and official URLs, preserving versions. */
+export function normalizeArxivId(value) {
+    let id = (value || '').trim();
+    if (/^https?:\/\//i.test(id)) {
+        try {
+            const url = new URL(id);
+            if (url.username || url.password)
+                return undefined;
+            if (['arxiv.org', 'www.arxiv.org', 'export.arxiv.org'].includes(url.hostname.toLowerCase())) {
+                if (!/^\/(abs|pdf)\//.test(url.pathname))
+                    return undefined;
+                id = decodeURIComponent(url.pathname.replace(/^\/(abs|pdf)\//, ''));
+            }
+            else if (['doi.org', 'dx.doi.org'].includes(url.hostname.toLowerCase())) {
+                id = decodeURIComponent(url.pathname.slice(1));
+            }
+            else
+                return undefined;
+        }
+        catch {
+            return undefined;
+        }
+    }
+    id = id.replace(/^doi:\s*/i, '').replace(/^10\.48550\/arxiv\./i, '')
+        .replace(/^arxiv:\s*/i, '').replace(/\.pdf$/i, '');
+    return /^(?:\d{4}\.\d{4,5}|[a-z-]+(?:\.[a-z]{2})?\/\d{7})(?:v[1-9]\d*)?$/i.test(id) ? id : undefined;
+}
+export function arxivPdfUrl(value) {
+    const id = normalizeArxivId(value);
+    return id ? `https://arxiv.org/pdf/${id}` : undefined;
+}
+export function publishedDoi(value) {
+    const doi = (value || '').trim().replace(/^(?:https?:\/\/(?:dx\.)?doi\.org\/|doi:\s*)/i, '').toLowerCase();
+    return /^10\.\d{4,9}\/\S+$/.test(doi) && !/^10\.48550\/arxiv\./i.test(doi) ? doi : undefined;
+}
+//# sourceMappingURL=arxiv.js.map

package/dist/infrastructure/arxiv.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"arxiv.js","sourceRoot":"","sources":["../../src/infrastructure/arxiv.ts"],"names":[],"mappings":"AAAA,oFAAoF;AACpF,MAAM,UAAU,gBAAgB,CAAC,KAAyB;IACxD,IAAI,EAAE,GAAG,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;IAC9B,IAAI,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC;QAC7B,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,EAAE,CAAC,CAAC;YACxB,IAAI,GAAG,CAAC,QAAQ,IAAI,GAAG,CAAC,QAAQ;gBAAE,OAAO,SAAS,CAAC;YACnD,IAAI,CAAC,WAAW,EAAE,eAAe,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC,EAAE,CAAC;gBAC5F,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC;oBAAE,OAAO,SAAS,CAAC;gBAC3D,EAAE,GAAG,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,OAAO,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAC,CAAC;YACtE,CAAC;iBAAM,IAAI,CAAC,SAAS,EAAE,YAAY,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC,EAAE,CAAC;gBAC1E,EAAE,GAAG,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;YACjD,CAAC;;gBAAM,OAAO,SAAS,CAAC;QAC1B,CAAC;QAAC,MAAM,CAAC;YAAC,OAAO,SAAS,CAAC;QAAC,CAAC;IAC/B,CAAC;IACD,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,sBAAsB,EAAE,EAAE,CAAC;SACjE,OAAO,CAAC,aAAa,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;IACrD,OAAO,mEAAmE,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC;AACvG,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,KAAa;IACvC,MAAM,EAAE,GAAG,gBAAgB,CAAC,KAAK,CAAC,CAAC;IACnC,OAAO,EAAE,CAAC,CAAC,CAAC,yBAAyB,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC;AACxD,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,KAAyB;IACpD,MAAM,GAAG,GAAG,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,OAAO,CAAC,8CAA8C,EAAE,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC;IAC3G,OAAO,oBAAoB,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC;AAC/F,CAAC"}

package/dist/infrastructure/pdf/PdfDownload.d.ts CHANGED Viewed

@@ -1,4 +1,6 @@
 export interface PdfDownloadOptions {
+    /** Only the final preprint tier may fetch arXiv PDFs. */
+    allowPreprint?: boolean;
     headers?: Record<string, string>;
     /** Overall request timeout; defaults to TIMEOUTS.DOWNLOAD. */
     timeoutMs?: number;

package/dist/infrastructure/pdf/PdfDownload.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/infrastructure/pdf/PdfDownload.js CHANGED Viewed

@@ -1,4 +1,5 @@
 import axios from 'axios';
+import { normalizeArxivId } from '../arxiv.js';
 import * as fs from 'fs';
 import * as path from 'path';
 import { Readable } from 'stream';
@@ -94,6 +95,9 @@ export async function downloadPdfFromUrl(pdfUrl, savePath, filenameHint, options
     if (pdfUrl.startsWith('ftp://')) {
         throw new Error('FTP PDF links are not supported by the Node downloader.');
     }
+    if (!options.allowPreprint && normalizeArxivId(pdfUrl)) {
+        throw new Error('arXiv PDF deferred until published-version routes finish');
+    }
     fs.mkdirSync(savePath, { recursive: true });
     const outputPath = path.join(savePath, `${safeFilename(filenameHint)}.pdf`);
     let response;
@@ -102,6 +106,11 @@ export async function downloadPdfFromUrl(pdfUrl, savePath, filenameHint, options
             responseType: 'stream',
             timeout: options.timeoutMs ?? TIMEOUTS.DOWNLOAD,
             maxRedirects: 5,
+            beforeRedirect: (redirect) => {
+                if (!options.allowPreprint && normalizeArxivId(`${redirect.protocol}//${redirect.hostname}${redirect.path}`)) {
+                    throw new Error('arXiv PDF deferred until published-version routes finish');
+                }
+            },
             headers: {
                 'User-Agent': USER_AGENT,
                 Accept: 'application/pdf,*/*',
@@ -118,6 +127,11 @@ export async function downloadPdfFromUrl(pdfUrl, savePath, filenameHint, options
         const detail = status ? ` with HTTP ${status}` : code ? ` (${code})` : '';
         throw new Error(`PDF download request failed${detail}.`);
     }
+    const finalUrl = response.request?.res?.responseUrl;
+    if (!options.allowPreprint && finalUrl && normalizeArxivId(finalUrl)) {
+        response.data?.destroy?.();
+        throw new Error('arXiv PDF deferred until published-version routes finish');
+    }
     if (response.status >= 400) {
         let errStream = response.data;
         if (!(errStream instanceof Readable) && !(errStream && typeof errStream.on === 'function')) {