npm - papersearch - Versions diffs - 0.4.0 → 0.4.3 - Mend

papersearch 0.4.0 → 0.4.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (157) hide show

package/dist/capabilities/citation-expansion/schemas.d.ts CHANGED Viewed

@@ -12,8 +12,8 @@ export declare const CitationLookupSchema: z.ZodEffects<z.ZodObject<{
 }, {
     paperId?: string | undefined;
     doi?: string | undefined;
-    limit?: number | undefined;
     arxivId?: string | undefined;
+    limit?: number | undefined;
 }>, {
     limit: number;
     paperId?: string | undefined;
@@ -22,7 +22,7 @@ export declare const CitationLookupSchema: z.ZodEffects<z.ZodObject<{
 }, {
     paperId?: string | undefined;
     doi?: string | undefined;
-    limit?: number | undefined;
     arxivId?: string | undefined;
+    limit?: number | undefined;
 }>;
 //# sourceMappingURL=schemas.d.ts.map

package/dist/capabilities/metadata-search/MultiSourceSearchService.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"MultiSourceSearchService.d.ts","sourceRoot":"","sources":["../../../src/capabilities/metadata-search/MultiSourceSearchService.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEzD,OAAO,EAAE,KAAK,EAAgB,MAAM,uBAAuB,CAAC;AAC5D,OAAO,EAAe,aAAa,EAAE,MAAM,gCAAgC,CAAC;AAS5E,OAAO,KAAK,EAAE,uBAAuB,EAAE,MAAM,YAAY,CAAC;AAE1D,YAAY,EAAE,uBAAuB,EAAE,MAAM,YAAY,CAAC;AAK1D,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,EAAE,SAAS,EAAE,SAAS,GAAG,MAAM,EAAE,CAiB3F;AAED,wBAAsB,qBAAqB,CACzC,SAAS,EAAE,SAAS,EACpB,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,aAAa,EACtB,eAAe,GAAE,MAA6B,GAC7C,OAAO,CAAC,uBAAuB,CAAC,CA8ClC;AAED,wBAAgB,YAAY,CAAC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,EAAE,~~CAYrD~~"}
1	+ {"version":3,"file":"MultiSourceSearchService.d.ts","sourceRoot":"","sources":["../../../src/capabilities/metadata-search/MultiSourceSearchService.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEzD,OAAO,EAAE,KAAK,EAAgB,MAAM,uBAAuB,CAAC;AAC5D,OAAO,EAAe,aAAa,EAAE,MAAM,gCAAgC,CAAC;AAS5E,OAAO,KAAK,EAAE,uBAAuB,EAAE,MAAM,YAAY,CAAC;AAE1D,YAAY,EAAE,uBAAuB,EAAE,MAAM,YAAY,CAAC;AAK1D,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,EAAE,SAAS,EAAE,SAAS,GAAG,MAAM,EAAE,CAiB3F;AAED,wBAAsB,qBAAqB,CACzC,SAAS,EAAE,SAAS,EACpB,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,aAAa,EACtB,eAAe,GAAE,MAA6B,GAC7C,OAAO,CAAC,uBAAuB,CAAC,CA8ClC;AAED,wBAAgB,YAAY,CAAC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,EAAE,CAsBrD"}

package/dist/capabilities/metadata-search/MultiSourceSearchService.js CHANGED Viewed

@@ -57,14 +57,25 @@ export async function searchMultipleSources(searchers, query, sources, options,
     };
 }
 export function dedupePapers(papers) {
-    const seen = new Set();
+    const positions = new Map();
     const out = [];
+    const preprint = (paper) => paper.source === 'arxiv' || /^10\.48550\/arxiv\./i.test(paper.doi);
     for (const paper of papers) {
         const key = paperKey(paper);
-        if (seen.has(key))
+        const index = positions.get(key);
+        if (index === undefined) {
+            positions.set(key, out.length);
+            out.push(paper);
             continue;
-        seen.add(key);
-        out.push(paper);
+        }
+        const previous = out[index];
+        // A known shared DOI links these versions; title resemblance alone does not.
+        if (preprint(previous) !== preprint(paper)) {
+            const formal = preprint(previous) ? paper : previous;
+            const early = preprint(previous) ? previous : paper;
+            out[index] = { ...formal, extra: { ...formal.extra,
+                    arxivId: early.extra?.arxivId || early.paperId, preprintUrl: early.pdfUrl } };
+        }
     }
     return out;
 }
@@ -74,6 +85,8 @@ function paperKey(paper) {
         return `doi:${doi}`;
     const title = (paper.title || '').trim().toLowerCase();
     const authors = (paper.authors || []).join(';').trim().toLowerCase();
+    if (paper.source === 'arxiv')
+        return `arxiv:${paper.paperId.replace(/v\d+$/, '')}`;
     if (title)
         return `title:${title}|authors:${authors}`;
     return `id:${paper.source || 'unknown'}:${paper.paperId || 'unknown'}`;

package/dist/capabilities/metadata-search/MultiSourceSearchService.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/capabilities/metadata-search/handler.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"handler.d.ts","sourceRoot":"","sources":["../../../src/capabilities/metadata-search/handler.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAwCzD,wBAAsB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,SAAS,EAAE,SAAS;;;;;GAkB1F;AAED,wBAAsB,kBAAkB,CAAC,IAAI,EAAE,GAAG,EAAE,SAAS,EAAE,SAAS;;;;;GAiDvE;AAED,wBAAsB,mBAAmB,CAAC,IAAI,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,SAAS,EAAE,SAAS;;;;;GA6FtG"}

package/dist/capabilities/metadata-search/handler.js CHANGED Viewed

@@ -1,3 +1,4 @@
+import { normalizeArxivId } from '../../infrastructure/arxiv.js';
 import { TIMEOUTS } from '../../config/constants.js';
 import { PaperFactory } from '../../models/Paper.js';
 import { logDebug } from '../../utils/Logger.js';
@@ -21,6 +22,11 @@ function normalizeDoi(value) {
         .toLowerCase();
 }
 function paperMatchesDoi(paper, doi) {
+    const id = normalizeArxivId(doi);
+    if (id && paper.source === 'arxiv') {
+        const found = normalizeArxivId(paper.paperId);
+        return !!found && (/v\d+$/.test(id) ? found === id : found.replace(/v\d+$/, '') === id);
+    }
     return normalizeDoi(paper.doi || '') === normalizeDoi(doi);
 }
 export async function handleGenericSearch(platform, args, searchers) {

package/dist/capabilities/metadata-search/handler.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/capabilities/metadata-search/schemas.d.ts CHANGED Viewed

@@ -72,12 +72,12 @@ export declare const SearchPapersSchema: z.ZodEffects<z.ZodObject<{
 }>;
 export declare const GetPaperByDoiSchema: z.ZodObject<{
     doi: z.ZodString;
-    platform: z.ZodDefault<z.ZodOptional<z.ZodEnum<["webofscience", "pubmed", "crossref", "openalex", "unpaywall", "pmc", "europepmc", "core", "all"]>>>;
+    platform: z.ZodDefault<z.ZodOptional<z.ZodEnum<["arxiv", "webofscience", "pubmed", "crossref", "openalex", "unpaywall", "pmc", "europepmc", "core", "all"]>>>;
 }, "strip", z.ZodTypeAny, {
     doi: string;
-    platform: "webofscience" | "pubmed" | "core" | "crossref" | "openalex" | "unpaywall" | "pmc" | "europepmc" | "all";
+    platform: "arxiv" | "webofscience" | "pubmed" | "core" | "crossref" | "openalex" | "unpaywall" | "pmc" | "europepmc" | "all";
 }, {
     doi: string;
-    platform?: "webofscience" | "pubmed" | "core" | "crossref" | "openalex" | "unpaywall" | "pmc" | "europepmc" | "all" | undefined;
+    platform?: "arxiv" | "webofscience" | "pubmed" | "core" | "crossref" | "openalex" | "unpaywall" | "pmc" | "europepmc" | "all" | undefined;
 }>;
 //# sourceMappingURL=schemas.d.ts.map

package/dist/capabilities/metadata-search/schemas.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../../src/capabilities/metadata-search/schemas.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA2BxB,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAmC3B,CAAC;AAEL,eAAO,MAAM,mBAAmB;;;;;;;;;~~EAkBtB~~,CAAC"}
1	+ {"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../../src/capabilities/metadata-search/schemas.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA2BxB,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAmC3B,CAAC;AAEL,eAAO,MAAM,mBAAmB;;;;;;;;;EAmBtB,CAAC"}

package/dist/capabilities/metadata-search/schemas.js CHANGED Viewed

@@ -63,6 +63,7 @@ export const GetPaperByDoiSchema = z
     doi: z.coerce.string().min(1),
     platform: z
         .enum([
+        'arxiv',
         'webofscience',
         'pubmed',
         'crossref',

package/dist/capabilities/metadata-search/schemas.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/capabilities/metadata-search/tools.js CHANGED Viewed

@@ -13,7 +13,7 @@ export const SEARCH_PAPERS_TOOL = {
             },
             sources: {
                 type: 'string',
-                description: 'Comma-separated source list for multi-source search. Use all for the broad registered set, or no-key (aliases: free, no_key) for Crossref, PubMed, Europe PMC, and OpenReview without user API keys. Failed or unconfigured sources are reported in failed_sources/errors. Example: crossref,openalex,pubmed,pmc'
+                description: 'Comma-separated source list for multi-source search. Use all for the broad registered set, or no-key (aliases: free, no_key) for Crossref, PubMed, Europe PMC, arXiv, and OpenReview without user API keys. Failed or unconfigured sources are reported in failed_sources/errors. Example: crossref,openalex,pubmed,pmc'
             },
             maxResults: {
                 type: 'number',

package/dist/capabilities/metadata-search/tools.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"tools.js","sourceRoot":"","sources":["../../../src/capabilities/metadata-search/tools.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,oCAAoC,CAAC;AAE5E,MAAM,CAAC,MAAM,kBAAkB,GAAG;IAChC,IAAI,EAAE,eAAe;IACrB,WAAW,EAAE,6EAA6E;IAC1F,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ;QACd,UAAU,EAAE;YACV,KAAK,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,qBAAqB,EAAE;YAC7D,QAAQ,EAAE;gBACR,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,CAAC,GAAG,sBAAsB,EAAE,KAAK,CAAC;gBACxC,WAAW,EACT,gGAAgG;aACnG;YACD,OAAO,EAAE;gBACP,IAAI,EAAE,QAAQ;gBACd,WAAW,EACT,yTAAyT;aAC5T;YACD,UAAU,EAAE;gBACV,IAAI,EAAE,QAAQ;gBACd,OAAO,EAAE,CAAC;gBACV,OAAO,EAAE,GAAG;gBACZ,WAAW,EAAE,qCAAqC;aACnD;YACD,IAAI,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,kDAAkD,EAAE;YACzF,MAAM,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,oBAAoB,EAAE;YAC7D,OAAO,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,qBAAqB,EAAE;YAC/D,QAAQ,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,gEAAgE,EAAE;YAC3G,IAAI,EAAE;gBACJ,IAAI,EAAE,QAAQ;gBACd,WAAW,EAAE,sDAAsD;aACpE;YACD,YAAY,EAAE;gBACZ,IAAI,EAAE,SAAS;gBACf,WAAW,EAAE,wCAAwC;aACtD;YACD,aAAa,EAAE;gBACb,IAAI,EAAE,OAAO;gBACb,KAAK,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE;gBACzB,WAAW,EAAE,gDAAgD;aAC9D;YACD,MAAM,EAAE;gBACN,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,CAAC;gBACxC,WAAW,EAAE,+CAA+C;aAC7D;YACD,SAAS,EAAE;gBACT,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC;gBACrB,WAAW,EAAE,qCAAqC;aACnD;SACF;QACD,QAAQ,EAAE,CAAC,OAAO,CAAC;KACpB;CACF,CAAC;AAEF,MAAM,CAAC,MAAM,qBAAqB,GAAG;IACnC,IAAI,EAAE,kBAAkB;IACxB,WAAW,EAAE,+DAA+D;IAC5E,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ;QACd,UAAU,EAAE;YACV,GAAG,EAAE;gBACH,IAAI,EAAE,QAAQ;gBACd,WAAW,EAAE,iCAAiC;aAC/C;YACD,QAAQ,EAAE;gBACR,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,CAAC,cAAc,EAAE,QAAQ,EAAE,UAAU,EAAE,UAAU,EAAE,WAAW,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,KAAK,CAAC;gBACxG,WAAW,EAAE,oBAAoB;aAClC;SACF;QACD,QAAQ,EAAE,CAAC,KAAK,CAAC;KAClB;CACF,CAAC;AAEF,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,kBAAkB,EAAE,qBAAqB,CAAC,CAAC"}

package/dist/capabilities/pdf-discovery/DownloadTier.d.ts CHANGED Viewed

@@ -6,6 +6,12 @@ export interface DownloadTier {
     run(context: DownloadTierContext): Promise<DownloadTierResult>;
 }
 export interface DownloadTierContext {
+    arxivId?: string;
+    arxivPaper?: import('../../models/Paper.js').Paper;
+    arxivOnly?: boolean;
+    arxivConflict?: boolean;
+    arxivLookupError?: string;
+    preprintIds?: string[];
     /** Set once the funnel has asked Crossref for a missing title. */
     titleLookedUp?: boolean;
     searchers: Searchers;
@@ -14,6 +20,8 @@ export interface DownloadTierContext {
     doi?: string;
     title?: string;
     savePath: string;
+    diagnosticsDir?: string;
+    outputMetadata?: import("./outputLayout.js").OutputMetadata;
     useEntitledAccess: boolean;
     useSciHub: boolean;
     batch?: DownloadBatchPosition;
@@ -22,6 +30,9 @@ export interface DownloadTierContext {
     shortUserWait?: boolean;
 }
 export interface DownloadTierResult {
+    version?: "preprint";
+    arxivId?: string;
+    publishedDoi?: string;
     status: "ok" | "error" | "skipped";
     path?: string;
     message: string;

package/dist/capabilities/pdf-discovery/DownloadTier.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/capabilities/pdf-discovery/OpenAccessFallbackService.js CHANGED Viewed

@@ -1,3 +1,6 @@
+import { createOutputLayout, lookupOutputMetadata, organizeFiles } from "./outputLayout.js";
+import { prepareArxiv } from "./arxiv.js";
+import { createPreprintTier } from "./tiers/preprint.js";
 import { TIMEOUTS } from "../../config/constants.js";
 import { unlinkSync } from "node:fs";
 import { verifyPdfIdentity } from "../../infrastructure/pdf/PdfIdentity.js";
@@ -19,6 +22,7 @@ export function createDefaultDownloadTiers(carsiBackend) {
         createPublisherApiTier(),
         createSciHubTier(),
         createEntitledAccessTier(carsiBackend),
+        createPreprintTier(),
     ];
 }
 export function insertDownloadTierBefore(tiers, beforeStage, tier) {
@@ -54,6 +58,7 @@ export async function downloadWithFallback(searchers, options, tiers = createDef
     const reviewPaths = [];
     const context = {
         searchers,
+        preprintIds: options.preprintIds || [],
         source: normalizeSource(options.source),
         paperId: options.paperId,
         doi: options.doi,
@@ -66,6 +71,13 @@ export async function downloadWithFallback(searchers, options, tiers = createDef
         ...(options.shortUserWait ? { shortUserWait: true } : {}),
     };
     let supplements;
+    await prepareArxiv(context);
+    context.outputMetadata = context.arxivOnly ? context.arxivPaper || {} : await lookupOutputMetadata(searchers, context.doi ? "crossref" : context.source, context.doi || context.paperId);
+    context.title ||= context.outputMetadata.title;
+    context.titleLookedUp = true;
+    const layout = createOutputLayout(savePath, context.doi || context.paperId, { ...context.outputMetadata, title: context.title }, !!context.arxivOnly);
+    context.savePath = layout.paperDir;
+    context.diagnosticsDir = layout.diagnosticsDir;
     for (const tier of tiers) {
         const startedAt = Date.now();
         let result;
@@ -76,7 +88,11 @@ export async function downloadWithFallback(searchers, options, tiers = createDef
                 await fillTitle(context, doi);
         }
         try {
-            result = await runStage(tier, context, stageTimeoutMs);
+            result = context.arxivOnly && tier.stage !== "preprint"
+                ? { status: "skipped", message: context.arxivLookupError
+                        ? "arXiv publication metadata unavailable; published DOI could not be resolved."
+                        : "No published DOI is linked to this arXiv identifier." }
+                : await runStage(tier, context, stageTimeoutMs);
         }
         catch (error) {
             notifyStage(options, tier.stage, startedAt, {
@@ -87,6 +103,16 @@ export async function downloadWithFallback(searchers, options, tiers = createDef
             throw error;
         }
         result = await identityGate(result, context, verifyIdentity);
+        try {
+            const destination = result.version === "preprint"
+                ? createOutputLayout(savePath, `arxiv:${result.arxivId}`, context.arxivPaper || {}, true) : layout;
+            organizeFiles(result, destination, context.savePath);
+        }
+        catch (error) {
+            // Keep the retrieved file and report a concrete filing failure.
+            attempts.push({ stage: "output_layout", status: "error", code: "output_layout_failed",
+                message: `File organization failed (${error instanceof Error ? error.name : "Error"}); use the returned file paths.` });
+        }
         notifyStage(options, tier.stage, startedAt, result);
         attempts.push({
             stage: tier.stage,
@@ -101,11 +127,15 @@ export async function downloadWithFallback(searchers, options, tiers = createDef
         }
         if (result.supplements?.length)
             supplements = result.supplements;
+        if (["batch_stopped", "user_skipped"].includes(result.code || ""))
+            break;
         if (result.status === "ok" && result.path) {
             discardReviews(reviewPaths, result.path);
             return {
                 status: "ok",
                 path: result.path,
+                ...(result.version ? { version: result.version, arxivId: result.arxivId } : {}),
+                ...(result.publishedDoi || context.arxivId && context.doi ? { publishedDoi: result.publishedDoi || context.doi } : {}),
                 ...(result.format && result.format !== "pdf"
                     ? { format: result.format }
                     : {}),

package/dist/capabilities/pdf-discovery/OpenAccessFallbackService.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/capabilities/pdf-discovery/arxiv.d.ts ADDED Viewed

@@ -0,0 +1,4 @@
+import type { DownloadTierContext } from './DownloadTier.js';
+/** Resolve an arXiv input to its explicitly linked published DOI before any PDF. */
+export declare function prepareArxiv(context: DownloadTierContext): Promise<void>;
+//# sourceMappingURL=arxiv.d.ts.map

package/dist/capabilities/pdf-discovery/arxiv.d.ts.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"arxiv.d.ts","sourceRoot":"","sources":["../../../src/capabilities/pdf-discovery/arxiv.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AAE7D,oFAAoF;AACpF,wBAAsB,YAAY,CAAC,OAAO,EAAE,mBAAmB,GAAG,OAAO,CAAC,IAAI,CAAC,CAiC9E"}

package/dist/capabilities/pdf-discovery/arxiv.js ADDED Viewed

@@ -0,0 +1,42 @@
+import { normalizeArxivId, publishedDoi } from '../../infrastructure/arxiv.js';
+import { sanitizeDoi, withTimeout } from '../../infrastructure/security/SecurityUtils.js';
+/** Resolve an arXiv input to its explicitly linked published DOI before any PDF. */
+export async function prepareArxiv(context) {
+    const id = normalizeArxivId(context.paperId) || normalizeArxivId(context.doi);
+    if (!id) {
+        if (!context.doi)
+            context.doi = publishedDoi(context.paperId) ? sanitizeDoi(context.paperId).sanitized : undefined;
+        return;
+    }
+    context.arxivId = id;
+    const givenDoi = publishedDoi(context.doi);
+    let paper = null;
+    try {
+        const searcher = context.searchers.arxiv;
+        if (searcher)
+            paper = await withTimeout(searcher.getPaperByDoi(id), 12_000, 'arXiv metadata lookup timed out');
+    }
+    catch (error) {
+        context.arxivLookupError = error instanceof Error ? error.message : String(error);
+    }
+    const linkedDoi = publishedDoi(paper?.doi);
+    if (givenDoi && linkedDoi && givenDoi !== linkedDoi) {
+        // Conflicting supplied DOI: try that formal paper, but never silently use
+        // an unrelated preprint as its fallback.
+        context.arxivId = undefined;
+        context.arxivConflict = true;
+    }
+    context.arxivPaper = paper || undefined;
+    const doi = givenDoi || linkedDoi;
+    if (doi) {
+        context.doi = doi;
+        context.paperId = doi;
+        context.source = 'crossref';
+        context.title = undefined; // published and preprint titles can differ
+    }
+    else {
+        context.doi = undefined;
+        context.arxivOnly = true;
+    }
+}
+//# sourceMappingURL=arxiv.js.map

package/dist/capabilities/pdf-discovery/arxiv.js.map ADDED Viewed

@@ -0,0 +1 @@

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package/dist/capabilities/pdf-discovery/batch.d.ts CHANGED Viewed

@@ -68,7 +68,7 @@ export declare function downloadBatchItem(searchers: Searchers, options: Downloa
  * page for them. ok when at least one file was saved. Reported to the run
  * ledger through ``request.onStage`` as the "supplements" stage.
  */
-export declare function downloadSupplementsOnly(request: DownloadWithFallbackOptions, backend: CarsiBackend | undefined): Promise<DownloadWithFallbackResult>;
+export declare function downloadSupplementsOnly(request: DownloadWithFallbackOptions, backend: CarsiBackend | undefined, searchers?: Searchers, paperDir?: string): Promise<DownloadWithFallbackResult>;
 /** Download a list serially; one batch id ties it to one progress window. */
 export declare function downloadBatch(searchers: Searchers, options: DownloadBatchOptions, backend?: CarsiBackend, log?: (line: string) => void, createTiers?: (backend?: CarsiBackend) => DownloadTier[], pause?: (ms: number) => Promise<void>): Promise<DownloadBatchResult>;
 //# sourceMappingURL=batch.d.ts.map

package/dist/capabilities/pdf-discovery/batch.d.ts.map CHANGED Viewed

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