paperlint 9.0.0 → 10.0.0

package/dist/folder-layout-hook.js

@@ -0,0 +1,117 @@
+/**
+ * The `paper-folder-layout` hook — `paper/allowed-files-only` and `repro/allowed-files-only` BEFORE a file is
+ * created, not at the next lint. PreToolUse on `Edit|Write|MultiEdit` (`plugin/hooks/hooks.json`):
+ * when the file about to be written does not exist yet and would add an entry the layout does not
+ * allow — at a paper folder's root, or at the top of its `repro/` — the call is denied, and the
+ * reason is the rule's own message: where the entry goes, and the layout drawn. The agent writes it
+ * where it belongs instead, in the same turn.
+ *
+ * ── WHAT IT NEVER BLOCKS ─────────────────────────────────────────────────────────
+ * - A file that already exists. Editing is never refused, wherever the file is: a paper whose
+ *   folder predates the layout keeps working, and the rule reports what is out of place.
+ * - A new file inside an entry that already exists, even one the layout does not allow: the entry is
+ *   not new, and the rule reports it once, by name. Only a NEW entry is refused.
+ * - Anything outside a paper folder (no `PIPELINE-STATUS.md` above it).
+ * A new study folder in `repro/` is created with its `README.md` first: any other first file in it
+ * is refused with `repro/allowed-files-only`'s "without a README.md" message.
+ *
+ * ── WHAT IT CANNOT SEE ───────────────────────────────────────────────────────────
+ * A shell command (`mv`, `cp`, a script writing files) is not an Edit or a Write, and this hook never
+ * sees it. The guarantee is the lint: both rules fail `paperlint lint`, in CI, whatever wrote the
+ * entry. The hook only saves the round trip. It does not read the paper's `rules` either: a paper
+ * that switched a layout rule off is still refused a new stray entry.
+ *
+ * ── ONE FUNCTION PER RULE, NOT TWO LISTS ─────────────────────────────────────────
+ * The texts are `strayTexts` (`src/folder-layout-rule.ts`) and `reproTexts`
+ * (`src/repro-layout-rule.ts`), the functions the rules report with.
+ *
+ * ── WHY IT IS NOT A VIGILES PROGRAM LIKE ITS NEIGHBOURS (measured 2026-10-12, vigiles 38) ──────
+ * A shipped `.hook.mjs` may import nothing but `vigiles/hook` (`checkHookImports`), so it cannot call
+ * this package's function; its only way to a tool is `run()`, whose output reaches stderr and never
+ * the hook's answer (`paper-status-gates.hook.mjs` measured that); and a `provide()` command runs
+ * before the reaction without the event, so it cannot know which file is written. Each of the three
+ * would mean a second copy of the layout. So `paperlint hook paper-folder-layout` runs this module
+ * in-process (`runHook`, src/cli.ts), behind the same wiring command as the other hooks, which is
+ * what `paperlint init` merges and `paperlint doctor` reads.
+ *
+ * ── THE CHEAP FIRST STEP ─────────────────────────────────────────────────────────
+ * Before reading any settings or listing any folder, the hook looks for the nearest folder above the
+ * file that holds `PIPELINE-STATUS.md` — the file every paper has and the rules are reported on — with
+ * one `isFile` per ancestor and nothing else: no git, no lint. No such folder: no output.
+ */
+import { dirname, isAbsolute, join, relative, resolve, sep } from "node:path";
+import { callerPath } from "./caller-path.js";
+import { ESCAPE_HATCH } from "./domain/paper-layout.js";
+import { README, REPRO_DIR, isStudyName } from "./domain/repro-layout.js";
+import { fieldOf } from "./domain/record.js";
+import { strayTexts } from "./folder-layout-rule.js";
+import { reproTexts } from "./repro-layout-rule.js";
+/** The file every paper folder has, and the rules are reported on. */
+const STATUS_FILE = "PIPELINE-STATUS.md";
+/** The target file's absolute path from the payload; null when there is none to read. */
+export function writtenPath(payload) {
+    const input = fieldOf(payload, "tool_input");
+    const raw = fieldOf(input, "file_path") ?? fieldOf(input, "notebook_path");
+    if (typeof raw !== "string" || raw === "")
+        return null;
+    if (isAbsolute(raw))
+        return resolve(raw);
+    const cwd = fieldOf(payload, "cwd");
+    return typeof cwd === "string" && isAbsolute(cwd) ? resolve(cwd, raw) : null;
+}
+/**
+ * The nearest folder above `file` holding `PIPELINE-STATUS.md`, up to the root; null when none, and
+ * null for anything under a folder named `extra/`, which lint never reads: an archived paper kept
+ * there carries its own status file and is not a paper to hold to the layout.
+ */
+export function paperFolderOf(file, files) {
+    // The same reach as lint's `**/extra/` ignore: a folder named extra/ anywhere above the file.
+    if (dirname(file).split(sep).includes(ESCAPE_HATCH))
+        return null;
+    const up = (dir) => {
+        if (files.isFile(callerPath(join(dir, STATUS_FILE))))
+            return dir;
+        const parent = dirname(dir);
+        return parent === dir ? null : up(parent);
+    };
+    return up(dirname(file));
+}
+/** The entry `segments` would add under `dir`, as the layout judges it; null when it exists. */
+const newEntry = (dir, [name = "", ...below], deps) => deps.listDir(callerPath(dir)).includes(name)
+    ? null
+    : { name, kind: below.length > 0 ? "dir" : "file" };
+/** Why creating `segments` (relative to the paper folder `dir`) breaks the layout; null when not. */
+function refusal(dir, segments, deps) {
+    const atRoot = newEntry(dir, segments, deps);
+    const [rootText] = atRoot === null ? [] : strayTexts(dir, [atRoot], deps.files);
+    if (rootText !== undefined)
+        return rootText;
+    const [top, ...inRepro] = segments;
+    if (top !== REPRO_DIR || inRepro.length === 0)
+        return null;
+    const entry = newEntry(join(dir, REPRO_DIR), inRepro, deps);
+    // A new study folder starts with its README.md: that write is what makes it complete.
+    if (entry === null ||
+        (isStudyName(entry.name) && inRepro.slice(1).join("/") === README))
+        return null;
+    const [text] = reproTexts(dir, [entry], deps.files);
+    return text ?? null;
+}
+/** The hook: the payload of an Edit or a Write in, Claude Code's refusal out, or null to allow. */
+export function folderLayoutHook(payload, deps) {
+    const file = writtenPath(payload);
+    const dir = file === null ? null : paperFolderOf(file, deps.files);
+    if (file === null || dir === null || deps.files.isFile(callerPath(file)))
+        return null;
+    const reason = refusal(dir, relative(dir, file).split(/[\\/]/), deps);
+    return reason === null
+        ? null
+        : {
+            hookSpecificOutput: {
+                hookEventName: "PreToolUse",
+                permissionDecision: "deny",
+                permissionDecisionReason: reason,
+            },
+        };
+}
+//# sourceMappingURL=folder-layout-hook.js.map

package/dist/folder-layout-hook.js.map

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package/dist/folder-layout-rule.d.ts

@@ -0,0 +1,22 @@
+import { type LayoutEntry } from "./domain/paper-layout.ts";
+import type { FolderRuleModule } from "./folder-venue-rule.ts";
+import type { Files } from "./ports/files.ts";
+import type { ListDir } from "./ports/talk-media.ts";
+/** What the rule reads with: the disk, and the names in a directory. */
+export interface FolderLayoutDeps {
+    readonly files: Files;
+    readonly listDir: ListDir;
+}
+/** What the paper's settings name at the root of `dir`, each once; none without readable settings. */
+export declare function declaredRoots(dir: string, files: Files): readonly string[];
+/**
+ * The text of each stray entry among `entries` of the paper folder `dir` — THE one function behind
+ * both the rule and the `paper-folder-layout` hook (`src/folder-layout-hook.ts`), so the two cannot
+ * disagree about what is allowed or what to say.
+ */
+export declare const strayTexts: (dir: string, entries: readonly LayoutEntry[], files: Files) => readonly string[];
+/** The rule, reading the folder and the paper's settings through `deps`. */
+export declare function folderLayoutRules(deps: FolderLayoutDeps): Readonly<Record<"allowed-files-only", FolderRuleModule>>;
+/** The level it is on at in paperlint's own config, for every paper's `PIPELINE-STATUS.md`. */
+export declare const FOLDER_LAYOUT_RULE_LEVELS: Readonly<Record<"paper/allowed-files-only", "error">>;
+//# sourceMappingURL=folder-layout-rule.d.ts.map

package/dist/folder-layout-rule.d.ts.map

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package/dist/folder-layout-rule.js

@@ -0,0 +1,107 @@
+/**
+ * `paper/allowed-files-only` — the root of a paper folder holds only paperlint's own files and folders.
+ *
+ * What may stand there, and why each entry, is `src/domain/paper-layout.ts` (the one list) and
+ * docs/rules/paper/allowed-files-only.md. This file reads the folder and the paper's settings, and reports.
+ *
+ * ── WHY A RULE THAT LISTS A DIRECTORY ───────────────────────────────────────────
+ * A structure linter over file NAMES (ls-lint, ESLint's `project-structure`) judges the files handed
+ * to it, and ESLint is handed only the files paperlint lints: a stray `.pdf`, `.py` or `.md` is never
+ * one of them, so a rule fired per file cannot see it. Listing the folder is one `readdir`; a rule is
+ * plain JS and may do it (root CLAUDE.md, "Measure before calling it impossible").
+ *
+ * ── WHICH FILE IT REPORTS ON ─────────────────────────────────────────────────────
+ * The folder is not a file ESLint lints; `PIPELINE-STATUS.md` is, in every paper (`paperlint lint`
+ * requires it, `paperlint new` writes it). Each stray entry is one finding on its first line, the
+ * place `paper/folder-venue-leftover` reports for the same reason.
+ *
+ * ── WHAT THE SETTINGS ADD ────────────────────────────────────────────────────────
+ * `pdf`, `talk.dir`, and a preset file of the paper's own (`extends`, or any cycle's) may name an
+ * entry at the root; each such entry is allowed while the settings name it. Settings that do not parse
+ * add nothing: `paperlint lint` refuses them before ESLint runs, and `pdf/profile` names the problem.
+ */
+import { basename, dirname, join, posix, relative, resolve } from "node:path";
+import { callerPath } from "./caller-path.js";
+import { judgeLayout, strayMessage, } from "./domain/paper-layout.js";
+import { readPaperSettings } from "./paper-settings.js";
+import { rulePageUrl } from "./venue-rules.js";
+const STATUS_FILE = "PIPELINE-STATUS.md";
+/** The first segment of `p`, relative to the paper folder `dir`; null when it is not inside it. */
+function rootOf(dir, p) {
+    const first = relative(dir, resolve(dir, p)).split(/[\\/]/, 1).join("");
+    return first === "" || first === ".." ? null : first;
+}
+/** A preset spec that names a file (`./venue.jsonc`), not a shipped preset (`paperlint:aidc`). */
+const isPresetFile = (spec) => spec.startsWith("./") || spec.startsWith("../");
+/** Every path the settings name relative to the paper: the PDF, the talk folder, its preset files. */
+const pathsOf = (s) => [
+    ...(s.pdf === null ? [] : [s.pdf]),
+    ...(s.talk === null ? [] : [s.talk.dir]),
+    ...[
+        s.extends,
+        ...(s.cycles?.list ?? []).map((c) => c.venue.kind === "preset" ? c.venue.extends : null),
+    ].filter((spec) => spec !== null && isPresetFile(spec)),
+];
+/** What the paper's settings name at the root of `dir`, each once; none without readable settings. */
+export function declaredRoots(dir, files) {
+    const read = readPaperSettings(files, dir);
+    if (!read.ok || read.value === null)
+        return [];
+    return [
+        ...new Set(pathsOf(read.value)
+            .map((p) => rootOf(dir, posix.normalize(p)))
+            .filter((r) => r !== null)),
+    ];
+}
+/** The folder's root entries, each a file or a folder. */
+const entriesOf = (dir, deps) => [...deps.listDir(callerPath(dir))].sort().map((name) => ({
+    name,
+    kind: deps.files.isFile(callerPath(join(dir, name))) ? "file" : "dir",
+}));
+/**
+ * The text of each stray entry among `entries` of the paper folder `dir` — THE one function behind
+ * both the rule and the `paper-folder-layout` hook (`src/folder-layout-hook.ts`), so the two cannot
+ * disagree about what is allowed or what to say.
+ */
+export const strayTexts = (dir, entries, files) => judgeLayout(entries, { roots: declaredRoots(dir, files) }).map(strayMessage);
+const META = {
+    type: "suggestion",
+    docs: {
+        description: "the paper folder's root holds only paperlint's own files and folders; anything else goes into the folder for its kind, or extra/",
+        url: rulePageUrl("paper/allowed-files-only"),
+    },
+    schema: [],
+    messages: {
+        // The whole text is `strayMessage` (src/domain/paper-layout.ts), the one the hook that fires on
+        // writing such an entry sends too.
+        stray: "{{text}}",
+    },
+};
+/** The rule, reading the folder and the paper's settings through `deps`. */
+export function folderLayoutRules(deps) {
+    return {
+        "allowed-files-only": {
+            meta: META,
+            create(context) {
+                if (basename(context.filename) !== STATUS_FILE)
+                    return {};
+                return {
+                    root() {
+                        const dir = dirname(context.filename);
+                        const at = context.sourceCode.getLocFromIndex(0);
+                        strayTexts(dir, entriesOf(dir, deps), deps.files).forEach((text) => {
+                            context.report({
+                                loc: { start: at, end: at },
+                                messageId: "stray",
+                                data: { text },
+                            });
+                        });
+                    },
+                };
+            },
+        },
+    };
+}
+/** The level it is on at in paperlint's own config, for every paper's `PIPELINE-STATUS.md`. */
+export const FOLDER_LAYOUT_RULE_LEVELS = { "paper/allowed-files-only": "error" };
+//# sourceMappingURL=folder-layout-rule.js.map

package/dist/folder-layout-rule.js.map

@@ -0,0 +1 @@
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package/dist/init.js

@@ -447,7 +447,7 @@ function papersLines(decl, why) {
         `      \`npx paperlint new <name>\` creates the first paper there.`,
     ];
 }
-// Documented in README.md#install-and-set-up — update it when this changes.
+// Documented in README.md#-getting-started and docs/install.md — update them when this changes.
 export async function init(dir, opts = {}) {
     const { log = console.log, err = console.error, 
     // eslint-disable-next-line no-restricted-globals -- legacy I/O, moves behind a port in #76

package/dist/init.js.map

@@ -1 +1 @@
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package/dist/lib/agent-cli-version.js

@@ -54,7 +54,7 @@ export function observeAgentCli({ spawnSync, program = "claude", characterized =
     const version = VERSION_IN.exec(raw)?.[1] ?? "";
     // ⚠️ EXIT 0 AND NOTHING ON STDOUT IS NOT A CLEAN OBSERVATION — it is exactly what the discarded
     // probe looked like, and reporting `characterized against ""` would be the same lie in a new
-    // place. This is rule 4 of CLAUDE.md applied to the check that enforces it.
+    // place. This is the green zero of scripts/rules-see-files.mjs, applied to the check that enforces it.
     if (version === "")
         throw new Error(`\`${program} --version\` exited 0 but printed no version on stdout (got ${JSON.stringify(raw)}` +
             `${probe.stderr ? `, stderr ${JSON.stringify(probe.stderr.trim().slice(0, 200))}` : ""}). ` +

package/dist/lib/agent-cli-version.js.map

@@ -1 +1 @@
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+{"version":3,"file":"agent-cli-version.js","sourceRoot":"","sources":["../../lib/agent-cli-version.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AAEH;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,iBAAiB,GAAG,SAAS,CAAC;AAE3C,+DAA+D;AAC/D,MAAM,UAAU,GAAG,qBAAqB,CAAC;AA6BzC,MAAM,UAAU,eAAe,CAAC,EAC9B,SAAS,EACT,OAAO,GAAG,QAAQ,EAClB,aAAa,GAAG,iBAAiB,GAKlC;IACC,2FAA2F;IAC3F,2FAA2F;IAC3F,oDAAoD;IACpD,MAAM,KAAK,GAAG,SAAS,CAAC,OAAO,EAAE,CAAC,WAAW,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAEtE,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;QACpB,OAAO;YACL,OAAO,EAAE,KAAK;YACd,GAAG,EAAE,EAAE;YACP,OAAO,EAAE,EAAE;YACX,aAAa;YACb,OAAO,EAAE,KAAK;YACd,IAAI,EAAE,SAAS,OAAO,oDAAoD;SAC3E,CAAC;IAEJ,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;IACxC,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IAEhD,gGAAgG;IAChG,6FAA6F;IAC7F,uGAAuG;IACvG,IAAI,OAAO,KAAK,EAAE;QAChB,MAAM,IAAI,KAAK,CACb,KAAK,OAAO,+DAA+D,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE;YAC9F,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK;YAC3F,8FAA8F;YAC9F,kEAAkE,CACrE,CAAC;IAEJ,MAAM,OAAO,GAAG,OAAO,KAAK,aAAa,CAAC;IAC1C,OAAO;QACL,OAAO,EAAE,IAAI;QACb,GAAG;QACH,OAAO;QACP,aAAa;QACb,OAAO;QACP,IAAI,EAAE,OAAO;YACX,CAAC,CAAC,cAAc,OAAO,MAAM,OAAO,oDAAoD;gBACtF,GAAG,aAAa,8EAA8E;gBAC9F,uEAAuE;YACzE,CAAC,CAAC,cAAc,OAAO,MAAM,OAAO,6DAA6D;KACpG,CAAC;AACJ,CAAC"}

package/dist/new-paper.d.ts

@@ -15,7 +15,8 @@ export declare const ALLOW_VENUE_NAME = "--allow-venue-name";
 /**
  * Why a name is refused, or null. `[a-z0-9._-]+` is the charset; a LEADING dot is refused on top
  * of it, because discovery skips dot-directories — a paper named `.x` would be created and then
- * never linted, which is worse than a refusal.
+ * never linted, which is worse than a refusal. `venues` and `extra` are refused for the same reason:
+ * the first is the venues' corpus beside the papers, the second is never linted.
  *
  * A name that names a venue — one of `venues`' names as whole words (`aisec-2026`) — is refused
  * too, the paper's own venue included: a paper that is rejected goes to another venue and keeps its
@@ -38,6 +39,8 @@ export type NewPaperResult = {
     /** The folder did not exist before this run. */
     readonly fresh: boolean;
     readonly files: readonly FileOutcome[];
+    /** The layout files written into a folder that was absent or empty, relative to it; none otherwise. */
+    readonly layout: readonly string[];
 } | {
     readonly ok: false;
     readonly reason: string;

package/dist/new-paper.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"new-paper.d.ts","sourceRoot":"","sources":["../src/new-paper.ts"],"names":[],"mappings":"AA0CA,OAAO,EAGL,KAAK,UAAU,EAChB,MAAM,wBAAwB,CAAC;AAEhC,8FAA8F;AAC9F,eAAO,MAAM,iBAAiB,QAE7B,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,YAAY,cAAc,CAAC;AAExC,eAAO,MAAM,WAAW,uBAAuB,CAAC;AAChD,6DAA6D;AAC7D,eAAO,MAAM,WAAW,cAAc,CAAC;AAEvC,mFAAmF;AACnF,eAAO,MAAM,gBAAgB,uBAAuB,CAAC;AAKrD;;;;;;;;;;;;GAYG;AACH,wBAAgB,WAAW,CACzB,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,SAAS,UAAU,EAAE,GAC5B,MAAM,GAAG,IAAI,CAef;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,sEAAsE;IACtE,QAAQ,CAAC,MAAM,EAAE,SAAS,GAAG,MAAM,CAAC;IACpC,uDAAuD;IACvD,QAAQ,CAAC,IAAI,CAAC,EAAE,SAAS,GAAG,SAAS,CAAC;CACvC;AAED,MAAM,MAAM,cAAc,GACtB;IACE,QAAQ,CAAC,EAAE,EAAE,IAAI,CAAC;IAClB,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,gDAAgD;IAChD,QAAQ,CAAC,KAAK,EAAE,OAAO,CAAC;IACxB,QAAQ,CAAC,KAAK,EAAE,SAAS,WAAW,EAAE,CAAC;IACvC,uGAAuG;IACvG,QAAQ,CAAC,MAAM,EAAE,SAAS,MAAM,EAAE,CAAC;CACpC,GACD;IAAE,QAAQ,CAAC,EAAE,EAAE,KAAK,CAAC;IAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAEpD,iGAAiG;AACjG,eAAO,MAAM,YAAY,EAAE,SAAS,MAAM,EAIzC,CAAC;AAEF,gGAAgG;AAChG,MAAM,WAAW,YAAY;IAC3B,8EAA8E;IAC9E,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IAC7B;;;OAGG;IACH,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,CAAC,GAAG,IAAI,CAAC;CAC3D;AAuED,mGAAmG;AACnG,MAAM,WAAW,eAAe;IAC9B,QAAQ,CAAC,gBAAgB,CAAC,EAAE,MAAM,CAAC;IACnC,QAAQ,CAAC,KAAK,CAAC,EAAE,YAAY,GAAG,IAAI,CAAC;IACrC,uFAAuF;IACvF,QAAQ,CAAC,MAAM,EAAE,SAAS,UAAU,EAAE,CAAC;CACxC;AAeD,wBAAgB,QAAQ,CACtB,UAAU,EAAE,MAAM,EAClB,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,eAAe,GACpB,cAAc,CAmChB;AAOD,iGAAiG;AACjG,wBAAgB,cAAc,CAC5B,MAAM,EAAE,cAAc,EACtB,IAAI,EAAE,CAAC,CAAC,EAAE,MAAM,KAAK,MAAM,GAC1B,MAAM,EAAE,CAiBV"}

package/dist/new-paper.js

@@ -12,14 +12,23 @@
  *   - the name is validated, because it becomes a path and, through the hooks, a shell argument.
  *
  * The only substitution is `{{name}}` → the folder name. Nothing else in a template is touched.
+ *
+ * Beside the three files, a NEW paper folder gets the layout the rules enforce (`SCAFFOLD_FILES`,
+ * src/domain/scaffold-layout.ts): its folders, each with a `.gitkeep` or a first file, so the layout
+ * is visible from the first commit. That is for a folder that is absent or empty. On a folder that
+ * holds anything, `new` adds only the missing three files, as before: a paper that already has its
+ * own shape is not given folders it did not choose, and one whose author deleted an empty folder
+ * does not get it back.
  */
 /* eslint-disable boundaries/dependencies -- legacy I/O, moves behind a port in #76 */
-import { existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
+import { existsSync, mkdirSync, readdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 /* eslint-enable boundaries/dependencies */
-import { join } from "node:path";
+import { dirname, join } from "node:path";
 import { fileURLToPath } from "node:url";
 import { CONFIG_FILE } from "#lib/paper-config";
 import { isRecord } from "./domain/record.js";
+import { ESCAPE_HATCH, VENUES_DIR } from "./domain/paper-layout.js";
+import { GITKEEP, SCAFFOLD_FILES, } from "./domain/scaffold-layout.js";
 import { venuesNamedBy, withoutVenues, } from "./domain/venue-name.js";
 /** The package's default templates. Read from disk, so they ship in the tarball (`files`). */
 export const PACKAGE_TEMPLATES = fileURLToPath(new URL("../templates/paper/", import.meta.url));
@@ -34,10 +43,13 @@ export const STATUS_FILE = "PIPELINE-STATUS.md";
 export const SOURCE_FILE = "paper.tex";
 /** The flag that lets `paperlint new` create a folder whose name names a venue. */
 export const ALLOW_VENUE_NAME = "--allow-venue-name";
+/** Names the papers directory's layout already gives a meaning to (src/domain/paper-layout.ts). */
+const RESERVED_NAMES = [VENUES_DIR, ESCAPE_HATCH];
 /**
  * Why a name is refused, or null. `[a-z0-9._-]+` is the charset; a LEADING dot is refused on top
  * of it, because discovery skips dot-directories — a paper named `.x` would be created and then
- * never linted, which is worse than a refusal.
+ * never linted, which is worse than a refusal. `venues` and `extra` are refused for the same reason:
+ * the first is the venues' corpus beside the papers, the second is never linted.
  *
  * A name that names a venue — one of `venues`' names as whole words (`aisec-2026`) — is refused
  * too, the paper's own venue included: a paper that is rejected goes to another venue and keeps its
@@ -51,6 +63,8 @@ export function nameProblem(name, venues) {
         return `\`${name}\` — a paper name may hold only a-z, 0-9, dot, underscore and hyphen (it becomes a path and a shell argument)`;
     if (name.startsWith("."))
         return `\`${name}\` — a name starting with a dot is skipped by paper discovery, so it would never be linted`;
+    if (RESERVED_NAMES.includes(name))
+        return `\`${name}\` — reserved: \`${VENUES_DIR}/\` beside the papers holds the venues' corpora, and lint never reads a folder named \`${ESCAPE_HATCH}/\`, so a paper by either name would be taken for something else or never linted`;
     const named = venuesNamedBy(name, venues);
     if (named.length === 0)
         return null;
@@ -112,7 +126,16 @@ function fromTemplate(file, { papersRoot, packageTemplates, name, venue, }) {
         ? { ok: true, value: { file, text: edited.text, from } }
         : edited;
 }
-// Documented in README.md#getting-started — update it when this changes.
+/** The layout files `dir` is given: all of them when it holds nothing (absent, or made by hand and still empty), else none. */
+const layoutFor = (dir, fresh) => fresh || readdirSync(dir).length === 0 ? SCAFFOLD_FILES : [];
+/** Writes the layout files under `dir`; `wx` fails rather than overwrite, as for the three files. */
+const writeLayout = (dir, layout) => {
+    layout.forEach(({ path, text }) => {
+        mkdirSync(dirname(join(dir, path)), { recursive: true });
+        writeFileSync(join(dir, path), text, { encoding: "utf8", flag: "wx" });
+    });
+};
+// Documented in README.md#-getting-started — update it when this changes.
 export function newPaper(papersRoot, name, opts) {
     const { packageTemplates = PACKAGE_TEMPLATES, venue = null } = opts;
     const problem = nameProblem(name, opts.venues);
@@ -139,6 +162,7 @@ export function newPaper(papersRoot, name, opts) {
             return planned;
         toWrite.push(planned.value);
     }
+    const scaffold = layoutFor(dir, fresh);
     // Read every template before writing any file, so a missing one leaves no half-made folder.
     mkdirSync(dir, { recursive: true });
     for (const { file, text, from } of toWrite) {
@@ -146,8 +170,13 @@ export function newPaper(papersRoot, name, opts) {
         writeFileSync(join(dir, file), text, { encoding: "utf8", flag: "wx" });
         files.push({ file, status: "created", from });
     }
-    return { ok: true, dir, fresh, files };
+    writeLayout(dir, scaffold);
+    return { ok: true, dir, fresh, files, layout: scaffold.map((f) => f.path) };
 }
+/** The folders the layout files sit in, each once, in order: `reviews/`, `repro/tools/`, … */
+const layoutFolders = (paths) => [
+    ...new Set(paths.map((p) => `${dirname(p)}/`)),
+];
 /** The report lines, shared by `paperlint new` and the first-paper offer in `paperlint init`. */
 export function reportNewPaper(result, here) {
     if (!result.ok)
@@ -159,6 +188,11 @@ export function reportNewPaper(result, here) {
         out.push(f.status === "created"
             ? `      + ${f.file}  (from the ${f.from === "project" ? `project's ${OVERRIDE_DIR}/` : "package"} template)`
             : `      = ${f.file}  (kept — never overwritten)`);
-    return out;
+    return result.layout.length === 0
+        ? out
+        : [
+            ...out,
+            `      + ${layoutFolders(result.layout).join(" ")}  (the paper's layout; an empty folder holds a ${GITKEEP}, so git keeps it)`,
+        ];
 }
 //# sourceMappingURL=new-paper.js.map

package/dist/new-paper.js.map

@@ -1 +1 @@
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package/dist/references.d.ts

@@ -9,7 +9,7 @@ import { type ReadDatabase, type RecordedEntry, type RecordedReadDeps } from "./
 export declare const REFERENCES_SCHEMA = 3;
 export declare const REFERENCES_FILE = "references.json";
 /** The lookup cache's place in a paper: committed, beside the paper's other reproduction files. */
-export declare const LOOKUP_CACHE_FILE = "repro/references-cache.json";
+export declare const LOOKUP_CACHE_FILE = "repro/data/references-cache.json";
 export declare const lookupCachePath: (paperDir: string) => string;
 /** Where a paper's reference verdicts live — beside `paper.facts.json`. */
 export declare const referencesPath: (paperDir: string) => string;

package/dist/references.d.ts.map

@@ -1 +1 @@
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package/dist/references.js

@@ -19,7 +19,7 @@
  * stale when it changes (`pdf_sha256`); these are about the databases and are stale when THEY
  * change (`bib.sha256`). One staleness key per file, the way `pdf/fresh` already works.
  *
- * 🔴 WHAT THE CHECKERS ANSWERED IS KEPT, COMMITTED, IN `<paper>/repro/references-cache.json`
+ * 🔴 WHAT THE CHECKERS ANSWERED IS KEPT, COMMITTED, IN `<paper>/repro/data/references-cache.json`
  * (`domain/lookup-cache.ts`). Loaded before the check and saved after it — only when something new
  * was fetched, a refreshed answer included — so a build asks each question at most once every
  * MAX_AGE_DAYS, not once per build (#107: 217 s for 27 references, every build). The verdicts above are NOT cached: they are derived from the cached
@@ -53,7 +53,7 @@ import { entriesOfDatabases, recordedBibliography, } from "./recorded-bibliograp
 export const REFERENCES_SCHEMA = 3;
 export const REFERENCES_FILE = "references.json";
 /** The lookup cache's place in a paper: committed, beside the paper's other reproduction files. */
-export const LOOKUP_CACHE_FILE = "repro/references-cache.json";
+export const LOOKUP_CACHE_FILE = "repro/data/references-cache.json";
 export const lookupCachePath = (paperDir) => join(paperDir, LOOKUP_CACHE_FILE);
 /** Where a paper's reference verdicts live — beside `paper.facts.json`. */
 export const referencesPath = (paperDir) => join(paperDir, "_build", REFERENCES_FILE);