paperlint 7.2.0 → 9.0.0

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Files changed (474) hide show
  1. package/CLAUDE.md +9 -25
  2. package/CONTRIBUTING.md +5 -4
  3. package/README.md +4 -3
  4. package/dist/adapters/bibtex/index.d.ts +3 -0
  5. package/dist/adapters/bibtex/index.d.ts.map +1 -0
  6. package/dist/adapters/bibtex/index.js +103 -0
  7. package/dist/adapters/bibtex/index.js.map +1 -0
  8. package/dist/adapters/latex/filecontents.d.ts +33 -0
  9. package/dist/adapters/latex/filecontents.d.ts.map +1 -0
  10. package/dist/adapters/latex/filecontents.js +65 -0
  11. package/dist/adapters/latex/filecontents.js.map +1 -0
  12. package/dist/adapters/latex/includes.d.ts +3 -3
  13. package/dist/adapters/latex/includes.d.ts.map +1 -1
  14. package/dist/adapters/latex/includes.js +18 -10
  15. package/dist/adapters/latex/includes.js.map +1 -1
  16. package/dist/adapters/latex/index.d.ts.map +1 -1
  17. package/dist/adapters/latex/index.js +2 -0
  18. package/dist/adapters/latex/index.js.map +1 -1
  19. package/dist/adapters/latex/nodes.d.ts +12 -0
  20. package/dist/adapters/latex/nodes.d.ts.map +1 -1
  21. package/dist/adapters/latex/nodes.js +39 -0
  22. package/dist/adapters/latex/nodes.js.map +1 -1
  23. package/dist/adapters/latex/parse.d.ts +7 -1
  24. package/dist/adapters/latex/parse.d.ts.map +1 -1
  25. package/dist/adapters/latex/parse.js +55 -6
  26. package/dist/adapters/latex/parse.js.map +1 -1
  27. package/dist/adapters/memory/index.d.ts +3 -0
  28. package/dist/adapters/memory/index.d.ts.map +1 -1
  29. package/dist/adapters/memory/index.js +9 -0
  30. package/dist/adapters/memory/index.js.map +1 -1
  31. package/dist/adapters/references/index.d.ts.map +1 -1
  32. package/dist/adapters/references/index.js +27 -24
  33. package/dist/adapters/references/index.js.map +1 -1
  34. package/dist/adapters/sources-record/index.d.ts +9 -0
  35. package/dist/adapters/sources-record/index.d.ts.map +1 -0
  36. package/dist/adapters/sources-record/index.js +68 -0
  37. package/dist/adapters/sources-record/index.js.map +1 -0
  38. package/dist/adapters/tex-output/blg.d.ts +9 -0
  39. package/dist/adapters/tex-output/blg.d.ts.map +1 -0
  40. package/dist/adapters/tex-output/blg.js +20 -0
  41. package/dist/adapters/tex-output/blg.js.map +1 -0
  42. package/dist/adapters/tex-output/fls.d.ts +8 -0
  43. package/dist/adapters/tex-output/fls.d.ts.map +1 -0
  44. package/dist/adapters/tex-output/fls.js +16 -0
  45. package/dist/adapters/tex-output/fls.js.map +1 -0
  46. package/dist/adapters/tex-output/index.d.ts +7 -0
  47. package/dist/adapters/tex-output/index.d.ts.map +1 -0
  48. package/dist/adapters/tex-output/index.js +7 -0
  49. package/dist/adapters/tex-output/index.js.map +1 -0
  50. package/dist/bib-rules.d.ts +47 -0
  51. package/dist/bib-rules.d.ts.map +1 -0
  52. package/dist/bib-rules.js +127 -0
  53. package/dist/bib-rules.js.map +1 -0
  54. package/dist/build.d.ts +29 -1
  55. package/dist/build.d.ts.map +1 -1
  56. package/dist/build.js +41 -30
  57. package/dist/build.js.map +1 -1
  58. package/dist/claim-provenance.d.ts +2 -2
  59. package/dist/cli.d.ts +9 -5
  60. package/dist/cli.d.ts.map +1 -1
  61. package/dist/cli.js +43 -68
  62. package/dist/cli.js.map +1 -1
  63. package/dist/domain/paper-source.d.ts +1 -10
  64. package/dist/domain/paper-source.d.ts.map +1 -1
  65. package/dist/domain/paper-source.js +34 -24
  66. package/dist/domain/paper-source.js.map +1 -1
  67. package/dist/domain/paper-sources.d.ts +72 -0
  68. package/dist/domain/paper-sources.d.ts.map +1 -0
  69. package/dist/domain/paper-sources.js +18 -0
  70. package/dist/domain/paper-sources.js.map +1 -0
  71. package/dist/domain/sources-record.d.ts +102 -0
  72. package/dist/domain/sources-record.d.ts.map +1 -0
  73. package/dist/domain/sources-record.js +38 -0
  74. package/dist/domain/sources-record.js.map +1 -0
  75. package/dist/domain/tex-run.d.ts +25 -0
  76. package/dist/domain/tex-run.d.ts.map +1 -0
  77. package/dist/domain/tex-run.js +79 -0
  78. package/dist/domain/tex-run.js.map +1 -0
  79. package/dist/eslint-rules/latex-language.d.ts.map +1 -1
  80. package/dist/eslint-rules/latex-language.js +10 -13
  81. package/dist/eslint-rules/latex-language.js.map +1 -1
  82. package/dist/eslint-rules/paper-context.d.ts.map +1 -1
  83. package/dist/eslint-rules/paper-context.js +6 -5
  84. package/dist/eslint-rules/paper-context.js.map +1 -1
  85. package/dist/eslint-rules/paper-typography.d.ts +0 -9
  86. package/dist/eslint-rules/paper-typography.d.ts.map +1 -1
  87. package/dist/eslint-rules/paper-typography.js +34 -96
  88. package/dist/eslint-rules/paper-typography.js.map +1 -1
  89. package/dist/eslint-rules/papers.d.ts +1 -3
  90. package/dist/eslint-rules/papers.d.ts.map +1 -1
  91. package/dist/eslint-rules/papers.js +2 -4
  92. package/dist/eslint-rules/papers.js.map +1 -1
  93. package/dist/eslint-rules/tex-build.d.ts.map +1 -1
  94. package/dist/eslint-rules/tex-build.js +8 -25
  95. package/dist/eslint-rules/tex-build.js.map +1 -1
  96. package/dist/init.d.ts +1 -4
  97. package/dist/init.d.ts.map +1 -1
  98. package/dist/init.js +3 -9
  99. package/dist/init.js.map +1 -1
  100. package/dist/latex-log.d.ts +10 -0
  101. package/dist/latex-log.d.ts.map +1 -1
  102. package/dist/latex-log.js +10 -0
  103. package/dist/latex-log.js.map +1 -1
  104. package/dist/latex-loop.d.ts +2 -0
  105. package/dist/latex-loop.d.ts.map +1 -1
  106. package/dist/latex-loop.js.map +1 -1
  107. package/dist/lib/markdown.d.ts +5 -81
  108. package/dist/lib/markdown.d.ts.map +1 -1
  109. package/dist/lib/markdown.js +5 -116
  110. package/dist/lib/markdown.js.map +1 -1
  111. package/dist/lib/paper-config.d.ts.map +1 -1
  112. package/dist/lib/paper-config.js +0 -2
  113. package/dist/lib/paper-config.js.map +1 -1
  114. package/dist/lib/skill-eval-fixture.d.ts +6 -4
  115. package/dist/lib/skill-eval-fixture.d.ts.map +1 -1
  116. package/dist/lib/skill-eval-fixture.js +25 -18
  117. package/dist/lib/skill-eval-fixture.js.map +1 -1
  118. package/dist/new-paper.d.ts +5 -11
  119. package/dist/new-paper.d.ts.map +1 -1
  120. package/dist/new-paper.js +12 -23
  121. package/dist/new-paper.js.map +1 -1
  122. package/dist/package-dirs.d.ts.map +1 -1
  123. package/dist/package-dirs.js +3 -2
  124. package/dist/package-dirs.js.map +1 -1
  125. package/dist/paper-files.d.ts +4 -4
  126. package/dist/paper-includes.d.ts +4 -7
  127. package/dist/paper-includes.d.ts.map +1 -1
  128. package/dist/paper-includes.js +29 -21
  129. package/dist/paper-includes.js.map +1 -1
  130. package/dist/paper-prose.d.ts +17 -0
  131. package/dist/paper-prose.d.ts.map +1 -0
  132. package/dist/paper-prose.js +46 -0
  133. package/dist/paper-prose.js.map +1 -0
  134. package/dist/paper-record.d.ts +25 -0
  135. package/dist/paper-record.d.ts.map +1 -0
  136. package/dist/paper-record.js +39 -0
  137. package/dist/paper-record.js.map +1 -0
  138. package/dist/paper-sources.d.ts +66 -0
  139. package/dist/paper-sources.d.ts.map +1 -0
  140. package/dist/paper-sources.js +92 -0
  141. package/dist/paper-sources.js.map +1 -0
  142. package/dist/ports/bib-reader.d.ts +18 -0
  143. package/dist/ports/bib-reader.d.ts.map +1 -0
  144. package/dist/ports/bib-reader.js +2 -0
  145. package/dist/ports/bib-reader.js.map +1 -0
  146. package/dist/ports/check-references.d.ts +9 -4
  147. package/dist/ports/check-references.d.ts.map +1 -1
  148. package/dist/ports/latex.d.ts +15 -0
  149. package/dist/ports/latex.d.ts.map +1 -1
  150. package/dist/ports/sources-codec.d.ts +11 -0
  151. package/dist/ports/sources-codec.d.ts.map +1 -0
  152. package/dist/ports/sources-codec.js +2 -0
  153. package/dist/ports/sources-codec.js.map +1 -0
  154. package/dist/ports/tex-output.d.ts +17 -0
  155. package/dist/ports/tex-output.d.ts.map +1 -0
  156. package/dist/ports/tex-output.js +2 -0
  157. package/dist/ports/tex-output.js.map +1 -0
  158. package/dist/recorded-bibliography.d.ts +89 -0
  159. package/dist/recorded-bibliography.d.ts.map +1 -0
  160. package/dist/recorded-bibliography.js +136 -0
  161. package/dist/recorded-bibliography.js.map +1 -0
  162. package/dist/reference-rules.d.ts +5 -5
  163. package/dist/reference-rules.d.ts.map +1 -1
  164. package/dist/reference-rules.js +150 -77
  165. package/dist/reference-rules.js.map +1 -1
  166. package/dist/references.d.ts +71 -16
  167. package/dist/references.d.ts.map +1 -1
  168. package/dist/references.js +110 -26
  169. package/dist/references.js.map +1 -1
  170. package/dist/register-bands.d.ts +3 -3
  171. package/dist/register-bands.d.ts.map +1 -1
  172. package/dist/register-bands.js.map +1 -1
  173. package/dist/register.d.ts +2 -2
  174. package/dist/sources-record.d.ts +38 -0
  175. package/dist/sources-record.d.ts.map +1 -0
  176. package/dist/sources-record.js +123 -0
  177. package/dist/sources-record.js.map +1 -0
  178. package/dist/sources-rules.d.ts +44 -0
  179. package/dist/sources-rules.d.ts.map +1 -0
  180. package/dist/sources-rules.js +76 -0
  181. package/dist/sources-rules.js.map +1 -0
  182. package/dist/structure.d.ts.map +1 -1
  183. package/dist/structure.js +4 -3
  184. package/dist/structure.js.map +1 -1
  185. package/dist/tex-paper.d.ts +10 -15
  186. package/dist/tex-paper.d.ts.map +1 -1
  187. package/dist/tex-paper.js +24 -40
  188. package/dist/tex-paper.js.map +1 -1
  189. package/dist/tex-venue-rules.d.ts +3 -3
  190. package/dist/tex-venue-rules.d.ts.map +1 -1
  191. package/dist/tex-venue-rules.js.map +1 -1
  192. package/dist/types.d.ts +0 -2
  193. package/dist/types.d.ts.map +1 -1
  194. package/docs/configuration.md +18 -12
  195. package/docs/design/paper-sources.md +197 -0
  196. package/docs/e2e.md +4 -6
  197. package/docs/package-shape-options.md +1 -1
  198. package/docs/prior-art/paper-folder-scaffolding.md +24 -29
  199. package/docs/references.md +34 -8
  200. package/docs/rules/bib/reachable-entry.md +64 -0
  201. package/docs/rules/paper/sources-fresh.md +81 -0
  202. package/docs/rules/tex/claim-provenance.md +0 -1
  203. package/docs/rules.md +62 -61
  204. package/eslint-rules/latex-language.harness.mjs +3 -3
  205. package/eslint-rules/latex-language.ts +10 -13
  206. package/eslint-rules/paper-context.ts +6 -5
  207. package/eslint-rules/paper-typography.test.mjs +29 -157
  208. package/eslint-rules/paper-typography.ts +35 -104
  209. package/eslint-rules/papers.harness.mjs +1 -1
  210. package/eslint-rules/papers.ts +2 -4
  211. package/eslint-rules/tex-build.harness.mjs +2 -2
  212. package/eslint-rules/tex-build.ts +8 -25
  213. package/eslint.config.mjs +22 -1
  214. package/fixtures/build-e2e/aidc/paper.tex +1 -1
  215. package/fixtures/build-e2e/anon-ack/paper.tex +1 -1
  216. package/fixtures/build-e2e/anon-author/paper.tex +1 -1
  217. package/fixtures/build-e2e/anon-bib/paper.tex +1 -1
  218. package/fixtures/build-e2e/anon-href/paper.tex +1 -1
  219. package/fixtures/build-e2e/anon-macro/paper.tex +1 -1
  220. package/fixtures/build-e2e/anon-pdfauthor/paper.tex +1 -1
  221. package/fixtures/paper-sources/p1/paper.tex +30 -0
  222. package/fixtures/paper-sources/p1/refs.bib +6 -0
  223. package/fixtures/paper-sources/p1/sections/dead.tex +6 -0
  224. package/fixtures/paper-sources/p1/sections/intro.tex +7 -0
  225. package/fixtures/paper-sources/p1/sections/parked.tex +6 -0
  226. package/fixtures/paper-sources/p1/tex-truth.json +37 -0
  227. package/fixtures/paper-sources/p1/versions/2026-01-01-review.tex +4 -0
  228. package/fixtures/paper-sources/v1-stale/paper.tex +14 -0
  229. package/fixtures/paper-sources/v1-stale/refs.bib +6 -0
  230. package/fixtures/paper-sources/v1-stale/tex-truth.json +32 -0
  231. package/fixtures/paper-sources/v10-ifthenelse/anon.bib +1 -0
  232. package/fixtures/paper-sources/v10-ifthenelse/paper.tex +9 -0
  233. package/fixtures/paper-sources/v10-ifthenelse/real.bib +1 -0
  234. package/fixtures/paper-sources/v10-ifthenelse/tex-truth.json +28 -0
  235. package/fixtures/paper-sources/v11-two-blocks/paper.tex +12 -0
  236. package/fixtures/paper-sources/v11-two-blocks/tex-truth.json +30 -0
  237. package/fixtures/paper-sources/v13-percent-text/paper.tex +6 -0
  238. package/fixtures/paper-sources/v13-percent-text/refs.bib +3 -0
  239. package/fixtures/paper-sources/v13-percent-text/tex-truth.json +30 -0
  240. package/fixtures/paper-sources/v15-after-end/paper.tex +6 -0
  241. package/fixtures/paper-sources/v15-after-end/refs.bib +1 -0
  242. package/fixtures/paper-sources/v15-after-end/tex-truth.json +17 -0
  243. package/fixtures/paper-sources/v16-included-block/bibblock.tex +3 -0
  244. package/fixtures/paper-sources/v16-included-block/paper.tex +7 -0
  245. package/fixtures/paper-sources/v16-included-block/refs.bib +1 -0
  246. package/fixtures/paper-sources/v16-included-block/tex-truth.json +35 -0
  247. package/fixtures/paper-sources/v17-include-order/bibsetup.tex +1 -0
  248. package/fixtures/paper-sources/v17-include-order/first.bib +1 -0
  249. package/fixtures/paper-sources/v17-include-order/later.bib +1 -0
  250. package/fixtures/paper-sources/v17-include-order/paper.tex +7 -0
  251. package/fixtures/paper-sources/v17-include-order/tex-truth.json +40 -0
  252. package/fixtures/paper-sources/v2-overwrite/paper.tex +14 -0
  253. package/fixtures/paper-sources/v2-overwrite/refs.bib +6 -0
  254. package/fixtures/paper-sources/v2-overwrite/tex-truth.json +30 -0
  255. package/fixtures/paper-sources/v22-parked-thebibliography/paper.tex +7 -0
  256. package/fixtures/paper-sources/v22-parked-thebibliography/tex-truth.json +17 -0
  257. package/fixtures/paper-sources/v23-parked-include/old.bib +1 -0
  258. package/fixtures/paper-sources/v23-parked-include/paper.tex +7 -0
  259. package/fixtures/paper-sources/v23-parked-include/parked.tex +1 -0
  260. package/fixtures/paper-sources/v23-parked-include/refs.bib +1 -0
  261. package/fixtures/paper-sources/v23-parked-include/tex-truth.json +28 -0
  262. package/fixtures/paper-sources/v24-quoted-fields/paper.tex +6 -0
  263. package/fixtures/paper-sources/v24-quoted-fields/refs.bib +5 -0
  264. package/fixtures/paper-sources/v24-quoted-fields/tex-truth.json +32 -0
  265. package/fixtures/paper-sources/v25-string-differs/paper.tex +10 -0
  266. package/fixtures/paper-sources/v25-string-differs/refs.bib +2 -0
  267. package/fixtures/paper-sources/v25-string-differs/tex-truth.json +32 -0
  268. package/fixtures/paper-sources/v26-comment-in-names/one.bib +1 -0
  269. package/fixtures/paper-sources/v26-comment-in-names/paper.tex +7 -0
  270. package/fixtures/paper-sources/v26-comment-in-names/tex-truth.json +32 -0
  271. package/fixtures/paper-sources/v26-comment-in-names/two.bib +1 -0
  272. package/fixtures/paper-sources/v27-shared-string/abbreviations.bib +2 -0
  273. package/fixtures/paper-sources/v27-shared-string/paper.tex +6 -0
  274. package/fixtures/paper-sources/v27-shared-string/references.bib +6 -0
  275. package/fixtures/paper-sources/v27-shared-string/tex-truth.json +31 -0
  276. package/fixtures/paper-sources/v28-shared-string-block/abbreviations.bib +2 -0
  277. package/fixtures/paper-sources/v28-shared-string-block/paper.tex +14 -0
  278. package/fixtures/paper-sources/v28-shared-string-block/tex-truth.json +33 -0
  279. package/fixtures/paper-sources/v29-generated-input/paper.tex +9 -0
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  281. package/fixtures/paper-sources/v3-declared/paper.bib +6 -0
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  283. package/fixtures/paper-sources/v3-declared/tex-truth.json +28 -0
  284. package/fixtures/paper-sources/v30-name-next-line/paper.tex +14 -0
  285. package/fixtures/paper-sources/v30-name-next-line/tex-truth.json +30 -0
  286. package/fixtures/paper-sources/v4-commented/paper.tex +14 -0
  287. package/fixtures/paper-sources/v4-commented/refs.bib +6 -0
  288. package/fixtures/paper-sources/v4-commented/tex-truth.json +28 -0
  289. package/fixtures/paper-sources/v5-percent-entry/paper.tex +20 -0
  290. package/fixtures/paper-sources/v5-percent-entry/tex-truth.json +37 -0
  291. package/fixtures/paper-sources/v6-unclosed/paper.tex +6 -0
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  293. package/fixtures/paper-sources/v6-unclosed/tex-truth.json +37 -0
  294. package/fixtures/paper-sources/v8-jobname/paper.tex +9 -0
  295. package/fixtures/paper-sources/v8-jobname/tex-truth.json +30 -0
  296. package/fixtures/paper-sources/v9-two-bibliographies/one.bib +1 -0
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  298. package/fixtures/paper-sources/v9-two-bibliographies/tex-truth.json +35 -0
  299. package/fixtures/paper-sources/v9-two-bibliographies/two.bib +1 -0
  300. package/fixtures/paper-typography/clean-paper/paper.tex +1 -1
  301. package/fixtures/paper-typography/messy-paper/paper.tex +1 -1
  302. package/hooks/hooks.harness.ts +15 -15
  303. package/hooks/paper-edit-guard.hook.mjs +5 -8
  304. package/hooks/paper-edit-guard.test.ts +12 -3
  305. package/hooks/paper-skills-nudge.hook.mjs +2 -3
  306. package/hooks/paper-skills-nudge.test.ts +13 -3
  307. package/hooks/paper-status-gates.hook.mjs +2 -2
  308. package/hooks/paper-status-gates.test.ts +14 -2
  309. package/lib/markdown.test.mjs +5 -60
  310. package/lib/markdown.ts +9 -136
  311. package/lib/paper-config.ts +0 -2
  312. package/lib/skill-checks.test.mjs +4 -1
  313. package/lib/skill-eval-fixture.ts +25 -18
  314. package/package.json +2 -12
  315. package/presets/realm.jsonc +1 -1
  316. package/scripts/check.test.ts +23 -1
  317. package/scripts/check.ts +7 -3
  318. package/scripts/coverage-config.test.ts +19 -10
  319. package/scripts/harness-api.frozen.json +0 -5
  320. package/scripts/layer-legacy-frozen.test.ts +41 -2
  321. package/scripts/layer-legacy-frozen.ts +31 -2
  322. package/skills/cold-read-diff/SKILL.md +3 -3
  323. package/skills/cold-read-diff/SKILL.md.spec.ts +2 -2
  324. package/skills/grade-paper-writing/SKILL.md +15 -22
  325. package/skills/grade-paper-writing/SKILL.md.spec.ts +14 -21
  326. package/skills/grade-paper-writing/__snapshots__/prose-lint.test.ts.snap +40 -26
  327. package/skills/grade-paper-writing/prose-lint.mjs +117 -278
  328. package/skills/grade-paper-writing/prose-lint.test.ts +230 -79
  329. package/skills/paper-adversarial-review/SKILL.md +2 -2
  330. package/skills/paper-adversarial-review/SKILL.md.spec.ts +1 -1
  331. package/skills/paper-pipeline/SKILL.md +9 -12
  332. package/skills/paper-pipeline/SKILL.md.spec.ts +8 -11
  333. package/skills/paper-pipeline/description-language.eval.mjs +25 -15
  334. package/skills/paper-pipeline/framing-vs-vocabulary.eval.mjs +25 -15
  335. package/skills/paper-pipeline/grade-paper-writing-ablation.eval.mjs +25 -15
  336. package/skills/paper-pipeline/pipeline-firing.eval.mjs +27 -16
  337. package/skills/paper-pipeline/pipeline-language.eval.mjs +25 -15
  338. package/skills/paper-pipeline/references/acceptance-gate.md +16 -20
  339. package/skills/paper-pipeline/references/artifact-checklist.md +4 -5
  340. package/skills/paper-pipeline/references/pipeline-status-template.md +1 -1
  341. package/skills/paper-pipeline/scripts/README.md +0 -4
  342. package/skills/paper-pipeline/scripts/extract-ref-facts.harness.mjs +91 -105
  343. package/skills/paper-pipeline/scripts/extract-ref-facts.mjs +85 -241
  344. package/skills/paper-pipeline/scripts/extract-ref-facts.test.mjs +166 -153
  345. package/skills/paper-pipeline/scripts/generated-code.harness.mjs +3 -3
  346. package/skills/paper-status/SKILL.md +2 -2
  347. package/skills/paper-status/SKILL.md.spec.ts +1 -1
  348. package/skills/render-paper/SKILL.md +2 -2
  349. package/skills/render-paper/SKILL.md.spec.ts +1 -1
  350. package/skills/render-paper/extract-pdf-facts.mjs +2 -2
  351. package/skills/tighten-paper/SKILL.md +29 -42
  352. package/skills/tighten-paper/SKILL.md.spec.ts +28 -41
  353. package/skills/verify-citations/SKILL.md +7 -4
  354. package/skills/verify-citations/SKILL.md.spec.ts +6 -3
  355. package/skills/verify-citations/scripts/bib-authors.check.test.mjs +17 -32
  356. package/skills/verify-citations/scripts/bib-authors.cli.test.ts +138 -43
  357. package/skills/verify-citations/scripts/bib-authors.d.mts +22 -2
  358. package/skills/verify-citations/scripts/bib-authors.mjs +54 -193
  359. package/skills/verify-citations/scripts/bib-authors.test.mjs +1 -44
  360. package/skills/verify-citations/scripts/verify-cites.cli.test.ts +16 -0
  361. package/skills/verify-citations/scripts/verify-cites.d.mts +19 -3
  362. package/skills/verify-citations/scripts/verify-cites.mjs +42 -108
  363. package/skills/verify-citations/scripts/verify-cites.test.mjs +23 -36
  364. package/src/adapters/bibtex/index.test.ts +163 -0
  365. package/src/adapters/bibtex/index.ts +155 -0
  366. package/src/adapters/latex/filecontents.ts +114 -0
  367. package/src/adapters/latex/includes.ts +18 -10
  368. package/src/adapters/latex/index.test.ts +73 -0
  369. package/src/adapters/latex/index.ts +2 -0
  370. package/src/adapters/latex/nodes.ts +64 -0
  371. package/src/adapters/latex/parse.test.ts +38 -0
  372. package/src/adapters/latex/parse.ts +67 -6
  373. package/src/adapters/memory/index.ts +17 -0
  374. package/src/adapters/references/index.test.ts +75 -21
  375. package/src/adapters/references/index.ts +37 -32
  376. package/src/adapters/sources-record/index.test.ts +87 -0
  377. package/src/adapters/sources-record/index.ts +82 -0
  378. package/src/adapters/tex-output/blg.ts +27 -0
  379. package/src/adapters/tex-output/fls.ts +24 -0
  380. package/src/adapters/tex-output/index.test.ts +171 -0
  381. package/src/adapters/tex-output/index.ts +12 -0
  382. package/src/bib-rules.test.ts +356 -0
  383. package/src/bib-rules.ts +228 -0
  384. package/src/bibliography-at.test.ts +286 -0
  385. package/src/build.harness.mjs +2 -2
  386. package/src/build.test.ts +211 -1
  387. package/src/build.ts +101 -41
  388. package/src/claim-provenance.test.ts +33 -7
  389. package/src/claim-provenance.ts +2 -2
  390. package/src/cli.harness.mjs +46 -56
  391. package/src/cli.test.ts +44 -48
  392. package/src/cli.ts +51 -82
  393. package/src/domain/paper-source.test.ts +58 -20
  394. package/src/domain/paper-source.ts +38 -42
  395. package/src/domain/paper-sources.ts +94 -0
  396. package/src/domain/sources-record.test.ts +71 -0
  397. package/src/domain/sources-record.ts +136 -0
  398. package/src/domain/tex-run.test.ts +228 -0
  399. package/src/domain/tex-run.ts +139 -0
  400. package/src/folder-venue-rule.test.ts +1 -1
  401. package/src/heading-case.test.ts +24 -10
  402. package/src/init.test.ts +6 -7
  403. package/src/init.ts +3 -22
  404. package/src/latex-log.ts +20 -0
  405. package/src/latex-loop.harness.ts +1 -0
  406. package/src/latex-loop.ts +2 -0
  407. package/src/lint-fix.test.ts +10 -4
  408. package/src/linted-set.test.ts +9 -1
  409. package/src/new-paper.harness.mjs +12 -30
  410. package/src/new-paper.test.ts +15 -11
  411. package/src/new-paper.ts +11 -30
  412. package/src/package-dirs.ts +3 -2
  413. package/src/paper-files.test.ts +5 -4
  414. package/src/paper-files.ts +4 -4
  415. package/src/paper-includes.test.ts +157 -38
  416. package/src/paper-includes.ts +39 -35
  417. package/src/paper-prose.test.ts +78 -0
  418. package/src/paper-prose.ts +67 -0
  419. package/src/paper-record.test.ts +173 -0
  420. package/src/paper-record.ts +66 -0
  421. package/src/paper-settings-commands.test.ts +5 -2
  422. package/src/paper-sources.ts +151 -0
  423. package/src/parse-args.test.ts +0 -1
  424. package/src/ports/bib-reader.ts +27 -0
  425. package/src/ports/check-references.ts +7 -3
  426. package/src/ports/latex.ts +19 -0
  427. package/src/ports/sources-codec.ts +11 -0
  428. package/src/ports/tex-output.ts +17 -0
  429. package/src/recorded-bibliography.ts +297 -0
  430. package/src/reference-rules.ts +217 -104
  431. package/src/references.test.ts +520 -177
  432. package/src/references.ts +185 -37
  433. package/src/register-bands.test.ts +5 -1
  434. package/src/register-bands.ts +3 -5
  435. package/src/register.test.ts +6 -1
  436. package/src/register.ts +2 -2
  437. package/src/rule-cases.test.ts +68 -12
  438. package/src/rule-docs.test.ts +0 -1
  439. package/src/sources-record.test.ts +308 -0
  440. package/src/sources-record.ts +231 -0
  441. package/src/sources-rules.test.ts +152 -0
  442. package/src/sources-rules.ts +117 -0
  443. package/src/structure.harness.ts +5 -11
  444. package/src/structure.ts +4 -3
  445. package/src/tex-paper.test.ts +148 -78
  446. package/src/tex-paper.ts +31 -61
  447. package/src/tex-venue-rules.test.ts +36 -8
  448. package/src/tex-venue-rules.ts +3 -5
  449. package/src/types.ts +0 -2
  450. package/dist/eslint-rules/bib-reachable-entry.d.ts +0 -22
  451. package/dist/eslint-rules/bib-reachable-entry.d.ts.map +0 -1
  452. package/dist/eslint-rules/bib-reachable-entry.js +0 -75
  453. package/dist/eslint-rules/bib-reachable-entry.js.map +0 -1
  454. package/eslint-rules/bib-reachable-entry.ts +0 -76
  455. package/fixtures/real-markdown-paper/baseline.json +0 -22
  456. package/fixtures/real-markdown-paper/baseline.ts +0 -70
  457. package/skills/paper-pipeline/PIPELINE-MAP.md +0 -381
  458. package/skills/paper-pipeline/pipeline-firing.baseline.json +0 -270
  459. package/skills/paper-pipeline/references/sweep-2026-08-09-ideal-pipeline.md +0 -585
  460. package/skills/paper-pipeline/scripts/artifact-coverage.harness.mjs +0 -492
  461. package/skills/paper-pipeline/scripts/artifact-coverage.mjs +0 -397
  462. package/skills/paper-pipeline/scripts/artifact-coverage.test.ts +0 -86
  463. package/skills/paper-pipeline/scripts/check-provenance.mjs +0 -184
  464. package/skills/paper-pipeline/scripts/population-map.harness.mjs +0 -135
  465. package/skills/paper-pipeline/scripts/population-map.mjs +0 -188
  466. package/skills/paper-pipeline/scripts/population-map.test.mjs +0 -154
  467. package/skills/paper-pipeline/scripts/provenance.harness.mjs +0 -266
  468. package/skills/paper-pipeline/scripts/round-diff.harness.ts +0 -907
  469. package/skills/paper-pipeline/scripts/round-diff.mjs +0 -583
  470. package/skills/paper-pipeline/scripts/round-diff.test.mjs +0 -159
  471. package/skills/tighten-paper/__snapshots__/structure.test.ts.snap +0 -133
  472. package/skills/tighten-paper/structure.mjs +0 -364
  473. package/skills/tighten-paper/structure.test.ts +0 -117
  474. package/templates/paper/paper.md +0 -4
@@ -24,7 +24,7 @@ import {
24
24
  checkNvd,
25
25
  checkCommit,
26
26
  reduceVerdict,
27
- parseBib,
27
+ citationsOf,
28
28
  parseArxivFeed,
29
29
  normalizeDoi,
30
30
  normalizeArxiv,
@@ -33,6 +33,12 @@ import {
33
33
  titleIdentity,
34
34
  isValidCveId,
35
35
  } from "./verify-cites.mjs";
36
+ import { bibReader } from "#src/adapters/bibtex/index";
37
+ import { absolutePath } from "#src/domain/paths";
38
+
39
+ /** The citations of a BibTeX text, read by the one bibtex reader. */
40
+ const citationsIn = (bib) =>
41
+ citationsOf(bibReader.readFile(absolutePath("/p/refs.bib"), bib).entries);
36
42
 
37
43
  /** One vitest case per check, named by it. */
38
44
  function ok(cond, name) {
@@ -377,7 +383,7 @@ console.log("\n(extra) .bib parser best-effort extraction:");
377
383
  eprint={1512.03385}
378
384
  }
379
385
  `;
380
- const cites = parseBib(bib);
386
+ const cites = citationsIn(bib);
381
387
  eq(cites.length, 2, "parsed 2 entries");
382
388
  eq(cites[0].doi, "10.5555/3295222.3295349", "entry 1 doi");
383
389
  eq(cites[1].arxiv, "1512.03385", "entry 2 arxiv eprint");
@@ -724,7 +730,7 @@ console.log("\n[S4] .bib parser edge cases:");
724
730
  title = {The Real Paper Title},
725
731
  year = {2021}
726
732
  }`;
727
- const a = parseBib(bibA)[0];
733
+ const a = citationsIn(bibA)[0];
728
734
  eq(a.title, "The Real Paper Title", "title anchored — not booktitle");
729
735
 
730
736
  // (b) brace-protected acronym must not truncate at the inner brace.
@@ -733,14 +739,14 @@ console.log("\n[S4] .bib parser edge cases:");
733
739
  year = {2026}
734
740
  }`;
735
741
  eq(
736
- parseBib(bibB)[0].title,
742
+ citationsIn(bibB)[0].title,
737
743
  "Evaluating LLM-based Systems for Code Review",
738
744
  "brace-protected acronym kept whole",
739
745
  );
740
746
 
741
747
  // (c1) one-line entry (no \n} at column 0).
742
748
  const bibC1 = `@article{k3, title = {A One Line Entry}, year = {2020}, doi = {10.1/abc}}`;
743
- const c1 = parseBib(bibC1)[0];
749
+ const c1 = citationsIn(bibC1)[0];
744
750
  eq(c1.title, "A One Line Entry", "one-line entry title parsed");
745
751
  eq(c1.doi, "10.1/abc", "one-line entry doi parsed");
746
752
 
@@ -750,14 +756,14 @@ console.log("\n[S4] .bib parser edge cases:");
750
756
  year = {2019}
751
757
  }`;
752
758
  eq(
753
- parseBib(bibC2)[0].title,
759
+ citationsIn(bibC2)[0].title,
754
760
  "Indented Closing Brace",
755
761
  "indented-closing-brace entry parsed",
756
762
  );
757
763
 
758
764
  // all four parse together, in sequence (balanced-brace scan resumes correctly).
759
765
  eq(
760
- parseBib(bibA + "\n" + bibB + "\n" + bibC1 + "\n" + bibC2).length,
766
+ citationsIn(bibA + "\n" + bibB + "\n" + bibC1 + "\n" + bibC2).length,
761
767
  4,
762
768
  "all 4 entries parsed in sequence",
763
769
  );
@@ -796,15 +802,6 @@ console.log("\n[S4] .bib parser edge cases:");
796
802
  });
797
803
  eq(n.doi, "10.1/y", "normalizeIdentifiers cleans doi");
798
804
  eq(n.arxiv, "1234.5678", "normalizeIdentifiers cleans arxiv");
799
- // the exact live-reproduced break: a \bibitem DOI with a swallowed sentence period.
800
- const bib = `\\begin{thebibliography}{9}
801
- \\bibitem{ccs23} A. Author. Title. In Proc. CCS. doi:10.1145/3576915.3623218. 2023.
802
- \\end{thebibliography}`;
803
- eq(
804
- parseBib(bib)[0].doi,
805
- "10.1145/3576915.3623218",
806
- "bibitem DOI trailing period not swallowed",
807
- );
808
805
  }
809
806
 
810
807
  // ── Edges of the pure layer: the defensive arms, each with the input that reaches it ──────────
@@ -916,32 +913,22 @@ test("reduceVerdict: an arXiv id missed only by a non-authoritative source is un
916
913
  });
917
914
  });
918
915
 
919
- test("parseBib: @comment/@string/@preamble are skipped, a bare value is read, an empty one is absent", () => {
916
+ test("citationsOf: @comment/@string/@preamble are no citations; a quoted and a bare value are read; authors written out", () => {
920
917
  const bib = [
921
918
  "@comment{c, not an entry}",
922
- "@string{s, x = {y}}",
923
- '@article{k1, title = "Quoted Title", year = 2017, eprint = {1706.03762}, archiveprefix = {arXiv}}',
924
- "@misc{k2, title = {T}, year = ,}",
925
- ].join("\n");
926
- assert.deepEqual(parseBib(bib), [
927
- { id: "k1", title: "Quoted Title", year: "2017", arxiv: "1706.03762" },
928
- { id: "k2", title: "T" },
929
- ]);
930
- });
931
-
932
- test("parseBib's \\bibitem fallback reads an arXiv id and an \\emph title", () => {
933
- const text = [
934
- "\\begin{thebibliography}{9}",
935
- "\\bibitem{a} A. Author. \\emph{A Long Enough Title}. arXiv:1706.03762, 2017.",
936
- "\\end{thebibliography}",
919
+ "@string{s = {y}}",
920
+ '@article{k1, title = "Quoted Title", year = 2017, eprint = {1706.03762}, archiveprefix = {arXiv}, author = {Vaswani, Ashish and von Neumann, John}}',
921
+ "@misc{k2, title = {T}, eprint = {x}, archiveprefix = {HAL}}",
937
922
  ].join("\n");
938
- assert.deepEqual(parseBib(text), [
923
+ assert.deepEqual(citationsIn(bib), [
939
924
  {
940
- id: "a",
941
- arxiv: "1706.03762",
925
+ id: "k1",
926
+ title: "Quoted Title",
942
927
  year: "2017",
943
- title: "A Long Enough Title",
928
+ authors: "Ashish Vaswani and John von Neumann",
929
+ arxiv: "1706.03762",
944
930
  },
931
+ { id: "k2", title: "T" },
945
932
  ]);
946
933
  });
947
934
 
@@ -0,0 +1,163 @@
1
+ /**
2
+ * The bibtex reader over @retorquere/bibtex-parser: where each entry stands, its fields as text, its
3
+ * name lists as names, the `@string` and `@preamble` a copy is compared on, and an entry it cannot
4
+ * finish. What bibtex reads beyond it is the post-build check's (src/references.ts), measured on the
5
+ * planted papers in src/paper-sources.test.ts.
6
+ */
7
+ import { readFileSync } from "node:fs";
8
+ import { dirname, join } from "node:path";
9
+ import { fileURLToPath } from "node:url";
10
+ import { describe, expect, it } from "vitest";
11
+ import { absolutePath } from "../../domain/paths.ts";
12
+ import { bibReader } from "./index.ts";
13
+
14
+ const PATH = absolutePath("/p/refs.bib");
15
+ const read = (text: string) => bibReader.readFile(PATH, text);
16
+
17
+ describe("the bibtex reader", () => {
18
+ it("places each entry in the text, a block's within the file that holds it", () => {
19
+ const tex =
20
+ "\\begin{filecontents*}{refs.bib}\n@misc{a, title={A}}\n@Article(b, title={B})\n\\end{filecontents*}\n";
21
+ const body = { start: tex.indexOf("@misc"), end: tex.indexOf("\\end") };
22
+ const bib = bibReader.read(absolutePath("/p/paper.tex"), tex, body);
23
+ expect(
24
+ bib.entries.map((e) => [
25
+ e.type,
26
+ e.key,
27
+ tex.slice(e.span.start, e.span.end),
28
+ ]),
29
+ ).toEqual([
30
+ ["misc", "a", "@misc{a, title={A}}"],
31
+ ["article", "b", "@Article(b, title={B})"],
32
+ ]);
33
+ });
34
+
35
+ it("reads fields as text: LaTeX accents, a link, a list field joined", () => {
36
+ const [e] = read(
37
+ '@book{k, title={M{\\"u}ller}, howpublished={\\url{https://x.org}}, publisher={A and B}}',
38
+ ).entries;
39
+ // The parser writes `{\"u}` as u and a combining diaeresis: compared composed.
40
+ expect(
41
+ Object.fromEntries(
42
+ Object.entries(e?.fields ?? {}).map(([k, v]) => [
43
+ k,
44
+ v.normalize("NFC"),
45
+ ]),
46
+ ),
47
+ ).toEqual({
48
+ title: "Müller",
49
+ howpublished: '<a href="https://x.org">https://x.org</a>',
50
+ publisher: "A and B",
51
+ });
52
+ });
53
+
54
+ it("reads a name list as names: family part, particle, suffix, a literal kept whole", () => {
55
+ const [e] = read(
56
+ "@misc{k, author={Lovelace, Ada and von Neumann, Jr., John and {World Health Organization} and others}}",
57
+ ).entries;
58
+ expect(e?.names).toEqual({
59
+ author: [
60
+ { lastName: "Lovelace", firstName: "Ada" },
61
+ {
62
+ lastName: "Neumann",
63
+ firstName: "John",
64
+ prefix: "von",
65
+ suffix: "Jr.",
66
+ },
67
+ { name: "World Health Organization" },
68
+ { lastName: "others" },
69
+ ],
70
+ });
71
+ });
72
+ });
73
+
74
+ describe("the bibtex reader — what a copy is compared on, and what it leaves to bibtex", () => {
75
+ it("reads @preamble commands, and expands each @string where an entry uses it", () => {
76
+ const bib = read(
77
+ '@string{v = "Venue"}\n@preamble{"\\x"}\n@misc{k, note = v}\n@string{v = "Later"}',
78
+ );
79
+ expect([bib.preamble, bib.entries[0]?.fields]).toEqual([
80
+ ['"\\x"'],
81
+ { note: "Venue" },
82
+ ]);
83
+ });
84
+
85
+ it("keeps each entry as bibtex takes it: the value it used, LaTeX and braces as written, whitespace folded", () => {
86
+ const bib = read(
87
+ '@string{v = "Venue"}\n@Misc{k, note = v # " 2", author = {G{\\"o}del, Kurt}, title = {{X}}, keywords = {b, a}}\n@string{v = "Later"}',
88
+ );
89
+ expect(bib.written).toEqual([
90
+ {
91
+ type: "misc",
92
+ key: "k",
93
+ fields: {
94
+ note: "Venue 2",
95
+ author: 'G{\\"o}del, Kurt',
96
+ title: "{X}",
97
+ keywords: "a, b",
98
+ },
99
+ },
100
+ ]);
101
+ });
102
+
103
+ it("an entry it cannot finish is no entry — bibtex reports that file (v6, exit 2)", () => {
104
+ const text = readFileSync(
105
+ join(
106
+ dirname(fileURLToPath(import.meta.url)),
107
+ "../../../fixtures/paper-sources/v6-unclosed/refs.bib",
108
+ ),
109
+ "utf8",
110
+ );
111
+ expect(read(text).entries.map((e) => e.key)).toEqual(["a1", "a3"]);
112
+ });
113
+ });
114
+
115
+ describe("the bibtex reader — databases in sequence, as bibtex reads them", () => {
116
+ // bibtex reads the databases of `\\bibliography{abbreviations,references}` one after the other, and an
117
+ // `@string` the first defines is in force in the second (fixtures/paper-sources/v27-shared-string:
118
+ // its .bbl typesets the expanded author and booktitle).
119
+ const ABBR =
120
+ '@string{venue = "Proceedings of the {\\"O}ld Venue"}\n@string{who = "Lovelace, Ada"}\n';
121
+ const REFS =
122
+ "@inproceedings{late, author = who, booktitle = venue # {, Main}}\n";
123
+ const SECOND = absolutePath("/p/references.bib");
124
+
125
+ it("🔴 an @string an earlier database defined is in force in a later one: read as one file holding both", () => {
126
+ const first = read(ABBR);
127
+ const second = bibReader.readFile(SECOND, REFS, first.strings);
128
+ const whole = read(ABBR + REFS);
129
+ expect([
130
+ second.entries.map((e) => [e.fields, e.names]),
131
+ second.written,
132
+ ]).toEqual([whole.entries.map((e) => [e.fields, e.names]), whole.written]);
133
+ expect(second.written[0]?.fields).toEqual({
134
+ author: "Lovelace, Ada",
135
+ booktitle: 'Proceedings of the {\\"O}ld Venue, Main',
136
+ });
137
+ });
138
+
139
+ it("the @strings in force after a database are those before it and its own, a redefinition winning; a block reads with them too", () => {
140
+ const first = read(ABBR);
141
+ const second = bibReader.readFile(
142
+ SECOND,
143
+ '@string{venue = "Newer"}\n',
144
+ first.strings,
145
+ );
146
+ expect([second.inherited, second.strings]).toEqual([
147
+ first.strings,
148
+ { VENUE: "Newer", WHO: "Lovelace, Ada" },
149
+ ]);
150
+ const tex = `\\begin{filecontents*}{refs.bib}\n${REFS}\\end{filecontents*}\n`;
151
+ const body = { start: tex.indexOf("@"), end: tex.indexOf("\\end") };
152
+ expect(
153
+ bibReader.read(absolutePath("/p/paper.tex"), tex, body, second.strings)
154
+ .written[0]?.fields.booktitle,
155
+ ).toBe("Newer, Main");
156
+ });
157
+
158
+ it("read alone, a database has nothing inherited: a name no @string defines stays unresolved", () => {
159
+ const alone = bibReader.readFile(SECOND, REFS);
160
+ expect([alone.inherited, alone.strings]).toEqual([{}, {}]);
161
+ expect(alone.written[0]?.fields.author).not.toBe("Lovelace, Ada");
162
+ });
163
+ });
@@ -0,0 +1,155 @@
1
+ /**
2
+ * The bibtex reader over `@retorquere/bibtex-parser` — the one `.bib` reader of paperlint
3
+ * (`src/ports/bib-reader.ts`).
4
+ *
5
+ * It reads a well-formed database as bibtex does: entries, fields (LaTeX read into text, so `{\"u}`
6
+ * is `ü` and `\url{x}` a link), name lists split into names, `@string`s expanded, `@preamble`. A
7
+ * second reading keeps each field as bibtex takes it, LaTeX as written: what two databases are
8
+ * compared by (`sameDatabase`), where `{\"u}` and `ü` must stay different. A malformed
9
+ * database is bibtex's to report: the build runs bibtex and fails with bibtex's own lines. The two
10
+ * readers also differ on one well-formed shape: bibtex has no comment syntax, so an entry behind
11
+ * `%` or inside `@comment{…}` is one bibtex reads and this reader does not. The build records what
12
+ * bibtex read, and `paper/refs-checked` names such an entry (`src/references.ts`).
13
+ *
14
+ * The parser gives each entry's text (`input`), not its place: each is found in the body in order.
15
+ *
16
+ * A database read after others starts with the `@string`s they left in force (`inherited`), as bibtex
17
+ * reads a paper's databases in sequence with one table of them: the parser takes them as its table of
18
+ * predefined `@string`s, which the database's own definitions override from where they stand. Each
19
+ * database is still parsed as its own text, so every entry keeps its place in the file that holds it.
20
+ */
21
+ import {
22
+ parse,
23
+ type Creator,
24
+ type Entry,
25
+ type Library,
26
+ type Options,
27
+ } from "@retorquere/bibtex-parser";
28
+ import type {
29
+ BibEntry,
30
+ BibName,
31
+ BibStrings,
32
+ BibText,
33
+ WrittenEntry,
34
+ } from "../../domain/paper-sources.ts";
35
+ import type { AbsolutePath } from "../../domain/paths.ts";
36
+ import type { Span } from "../../domain/tex-document.ts";
37
+ import type { BibReader } from "../../ports/bib-reader.ts";
38
+
39
+ /** A title as written, not sentence-cased; no field kept as raw LaTeX. */
40
+ const OPTIONS: Readonly<Options> = { sentenceCase: false, verbatimFields: [] };
41
+
42
+ /**
43
+ * Every field as bibtex takes it: `@string`s expanded where they are used, LaTeX left as written (no
44
+ * conversion, no name split, no outer braces dropped).
45
+ */
46
+ const AS_WRITTEN: Readonly<Options> = {
47
+ raw: true,
48
+ sentenceCase: false,
49
+ verbatimFields: [/.*/],
50
+ removeOuterBraces: [],
51
+ };
52
+
53
+ /** A name's parts, those it has: the parser leaves the others out. */
54
+ const nameOf = (c: Readonly<Creator>): BibName =>
55
+ Object.fromEntries(
56
+ Object.entries({
57
+ lastName: c.lastName,
58
+ firstName: c.firstName,
59
+ prefix: c.prefix,
60
+ suffix: c.suffix,
61
+ name: c.name,
62
+ }).filter((kv): kv is [string, string] => kv[1] !== undefined),
63
+ );
64
+
65
+ const isText = (x: unknown): x is string => typeof x === "string";
66
+ const isName = (x: unknown): x is Readonly<Creator> =>
67
+ typeof x === "object" && x !== null;
68
+
69
+ /** An entry's fields and name lists, from the parser's one record of both. */
70
+ function fieldsOf(e: Readonly<Entry>): Pick<BibEntry, "fields" | "names"> {
71
+ const pairs = Object.entries(e.fields);
72
+ const isNames = (k: string): boolean => e.mode[k] === "creatorlist";
73
+ return {
74
+ // A list field (`keywords`, `publisher`) is joined as BibTeX writes it.
75
+ fields: Object.fromEntries(
76
+ pairs
77
+ .filter(([k]) => !isNames(k))
78
+ .map(([k, v]) => [k, [v].flat().filter(isText).join(" and ")]),
79
+ ),
80
+ names: Object.fromEntries(
81
+ pairs
82
+ .filter(([k]) => isNames(k))
83
+ .map(([k, v]) => [k, [v].flat().filter(isName).map(nameOf)]),
84
+ ),
85
+ };
86
+ }
87
+
88
+ /** Each entry the parser read, placed in the text: found in `source` in order, `source` at `offset`. */
89
+ function placed(
90
+ parsed: readonly Readonly<Entry>[],
91
+ source: string,
92
+ offset: number,
93
+ ): readonly BibEntry[] {
94
+ return parsed.reduce<{
95
+ readonly from: number;
96
+ readonly found: readonly BibEntry[];
97
+ }>(
98
+ (acc, e) => {
99
+ const at = source.indexOf(e.input, acc.from);
100
+ const end = at + e.input.length;
101
+ const span = { start: offset + at, end: offset + end };
102
+ const entry = { type: e.type.toLowerCase(), key: e.key, span };
103
+ return { from: end, found: [...acc.found, { ...entry, ...fieldsOf(e) }] };
104
+ },
105
+ { from: 0, found: [] },
106
+ ).found;
107
+ }
108
+
109
+ /** The entries the parser finished: one it could not keeps no text — it is malformed, and bibtex reports it. */
110
+ const finished = (lib: Readonly<Library>): readonly Readonly<Entry>[] =>
111
+ lib.entries.filter((e) => e.input !== "");
112
+
113
+ /** An entry as bibtex takes it; a list field (`keywords`) as one value. */
114
+ const writtenOf = (e: Readonly<Entry>): WrittenEntry => ({
115
+ type: e.type.toLowerCase(),
116
+ key: e.key,
117
+ fields: Object.fromEntries(
118
+ Object.entries(e.fields).map(([k, v]) => [
119
+ k,
120
+ [v].flat().filter(isText).join(", "),
121
+ ]),
122
+ ),
123
+ });
124
+
125
+ /**
126
+ * The database in `body` of `text`, the text of the file at `path`, read with the `@string`s
127
+ * `inherited` in force. The parser is handed a copy of them: it writes into its own.
128
+ */
129
+ function read(
130
+ path: AbsolutePath,
131
+ text: string,
132
+ body: Span,
133
+ inherited: BibStrings = {},
134
+ ): BibText {
135
+ const source = text.slice(body.start, body.end);
136
+ const lib = parse(source, { ...OPTIONS, strings: { ...inherited } });
137
+ const asWritten = parse(source, { ...AS_WRITTEN, strings: { ...inherited } });
138
+ return {
139
+ path,
140
+ text,
141
+ body,
142
+ entries: placed(finished(lib), source, body.start),
143
+ written: finished(asWritten).map(writtenOf),
144
+ preamble: lib.preamble,
145
+ inherited,
146
+ // Its own as bibtex takes them: the reading that keeps LaTeX as written.
147
+ strings: { ...inherited, ...asWritten.strings },
148
+ };
149
+ }
150
+
151
+ export const bibReader: BibReader = {
152
+ read,
153
+ readFile: (path, text, inherited) =>
154
+ read(path, text, { start: 0, end: text.length }, inherited),
155
+ };
@@ -0,0 +1,114 @@
1
+ /**
2
+ * THE `filecontents` BLOCKS OF A SOURCE — where a `.bib` TeX wrote stands in the text that wrote it.
3
+ * Read from the parse tree, never decided: which file a block writes, and whether TeX ran it, is
4
+ * TeX's answer (`written` in `_build/sources.json`); this reader only says where each block's text
5
+ * is, so a finding about an entry TeX read can be shown at the block that holds it
6
+ * (docs/design/paper-sources.md §1).
7
+ *
8
+ * unified-latex reads a `filecontents` environment as verbatim; its option and file name are the
9
+ * first things in that node, white space between them — a line break too: `\begin{filecontents*}` with
10
+ * `{refs.bib}` on the next line writes `refs.bib` (measured with pdflatex) — and its body starts on the
11
+ * line after the name, as LaTeX's own reader starts it.
12
+ * A block is live when the tree keeps it: a comment is a node of its own, `\iffalse … \fi` is cut at
13
+ * parse (`conditionals.ts`), and nothing after `\end{document}` is read (`liveRoot`).
14
+ */
15
+ import type * as Ast from "@unified-latex/unified-latex-types";
16
+ import type { Filecontents } from "../../ports/latex.ts";
17
+ import {
18
+ argumentPieces,
19
+ inPlace,
20
+ isNode,
21
+ placeOf,
22
+ visited,
23
+ type ArgumentPiece,
24
+ type Node,
25
+ } from "./nodes.ts";
26
+ import { liveRoot, parseLatex, type ParsedTex } from "./parse.ts";
27
+
28
+ const FILECONTENTS: ReadonlySet<string> = new Set([
29
+ "filecontents",
30
+ "filecontents*",
31
+ ]);
32
+
33
+ /** Names and options as TeX reads them: off the tree, a comma between two names. */
34
+ type Name = readonly ArgumentPiece[];
35
+
36
+ /** What a name or an option is written as: its pieces joined, white space trimmed off. */
37
+ export const written = (name: Name): string =>
38
+ name
39
+ .map((p) => p.text)
40
+ .join("")
41
+ .trim();
42
+
43
+ /** What may stand before the name: nothing, or one `[options]` — anything else is a block with no name. */
44
+ const OPTION = /^(?:\[[^\]]*\])?$/;
45
+
46
+ /** A block's head: its name's group, and its options. */
47
+ interface Head {
48
+ readonly name: Node;
49
+ readonly options: readonly string[];
50
+ }
51
+
52
+ /** The head of a block whose text is `text`: the first group, with only white space and an option before it. */
53
+ function headOf(text: string): Head | null {
54
+ const nodes = parseLatex(text).root.content;
55
+ const at = nodes.findIndex((x) => x.type === "group");
56
+ const option = written(argumentPieces(nodes.slice(0, Math.max(at, 0)), null));
57
+ const name = nodes[at];
58
+ if (name === undefined || !OPTION.test(option)) return null;
59
+ return {
60
+ name,
61
+ options: option
62
+ .replace(/^\[|\]$/g, "")
63
+ .split(",")
64
+ .map((o) => o.trim()),
65
+ };
66
+ }
67
+
68
+ /**
69
+ * One verbatim `filecontents` node as a block: its name, option, and body. unified-latex reads the
70
+ * whole environment as verbatim, so its text is parsed on its own and the name read off that tree like
71
+ * a declaration's (`headOf`). The body starts on the line after the one the name ends on; what TeX
72
+ * ignores after the name on that line is no body.
73
+ */
74
+ export function blockOf(
75
+ src: string,
76
+ n: Readonly<Ast.VerbatimEnvironment>,
77
+ jobname: string,
78
+ ): readonly Filecontents[] {
79
+ return inPlace(placeOf(n), (span) => {
80
+ // The node runs from `\begin{env}` to past `\end{env}`.
81
+ const headAt = span.start + `\\begin{${n.env}}`.length;
82
+ const end = span.end - `\\end{${n.env}}`.length;
83
+ const head = headOf(src.slice(headAt, end));
84
+ if (head === null) return [];
85
+ return inPlace(placeOf(head.name), (named) => {
86
+ const after = headAt + named.end;
87
+ // What TeX ignores after the name, up to the end of its line.
88
+ const rest = src.slice(after, end).split("\n", 1).join("");
89
+ return [
90
+ {
91
+ writes: written(argumentPieces([head.name], jobname)),
92
+ overwrite: head.options.some(
93
+ (o) => o === "overwrite" || o === "force",
94
+ ),
95
+ span,
96
+ body: { start: Math.min(after + rest.length + 1, end), end },
97
+ },
98
+ ];
99
+ });
100
+ });
101
+ }
102
+
103
+ const isBlock = (n: Node): n is Readonly<Ast.VerbatimEnvironment> =>
104
+ n.type === "verbatim" && FILECONTENTS.has(n.env);
105
+
106
+ /** Every live `filecontents` block of a source whose main file's name is `jobname`, in source order. */
107
+ export const filecontentsOf = (
108
+ t: ParsedTex,
109
+ jobname: string,
110
+ ): readonly Filecontents[] =>
111
+ visited(liveRoot(t), () => false)
112
+ .filter(isNode)
113
+ .filter(isBlock)
114
+ .flatMap((n) => blockOf(t.src, n, jobname));
@@ -4,6 +4,7 @@ import type { Include } from "../../domain/paper-source.ts";
4
4
  import type { Span } from "../../domain/tex-document.ts";
5
5
  import { isDefinition } from "./hidden.ts";
6
6
  import {
7
+ argumentPieces,
7
8
  inPlace,
8
9
  isNode,
9
10
  macroPlace,
@@ -13,7 +14,7 @@ import {
13
14
  type Macro,
14
15
  type Node,
15
16
  } from "./nodes.ts";
16
- import type { ParsedTex } from "./parse.ts";
17
+ import { liveRoot, type ParsedTex } from "./parse.ts";
17
18
 
18
19
  const INCLUDE_MACROS: ReadonlyMap<string, Include["macro"]> = new Map([
19
20
  ["input", "input"],
@@ -22,15 +23,22 @@ const INCLUDE_MACROS: ReadonlyMap<string, Include["macro"]> = new Map([
22
23
  ]);
23
24
 
24
25
  /**
25
- * The path an include names, as written: its braced argument, or — TeX's own form, `\input name` —
26
- * the name up to the next space. unified-latex gives the unbraced form an argument of the first
27
- * token only (`sections` of `sections/a`), so the source is read for it.
26
+ * The path an include names: its braced argument read off the tree as TeX reads it (a comment is no
27
+ * part of it; a macro stays as written: nothing here expands one), or — TeX's own form, `\\input name`
28
+ * — the name up to the next space. unified-latex gives the unbraced form an argument of the first
29
+ * token only (`sections` of `sections/a`), so the source is read for that one.
28
30
  */
29
31
  function argumentText(src: string, m: Macro): string | null {
30
- const start = mandatory(m)[0]?.content[0]?.position?.start.offset;
31
- if (start === undefined) return null;
32
+ const arg = mandatory(m)[0];
33
+ const start = arg?.content[0]?.position?.start.offset;
34
+ if (arg === undefined || start === undefined) return null;
35
+ // The parser gives both forms `{` as their open mark; the source says which one was written.
36
+ if (src[start - 1] === "{")
37
+ return argumentPieces(arg.content, null)
38
+ .map((p) => p.text)
39
+ .join("");
32
40
  const rest = src.slice(start);
33
- const stop = rest.search(src[start - 1] === "{" ? /\}/u : /[\s{}%]/u);
41
+ const stop = rest.search(/[\s{}%]/u);
34
42
  return stop < 0 ? rest : rest.slice(0, stop);
35
43
  }
36
44
 
@@ -44,11 +52,11 @@ function includeOf(src: string, m: Macro): readonly Include[] {
44
52
 
45
53
  /**
46
54
  * Every `\input`, `\include` and `\subfile` of the source, in source order — not in a comment (a
47
- * comment is a node of its own) and not in a macro definition's body, which is read where the macro
48
- * is used, and nothing here expands macros.
55
+ * comment is a node of its own), not in a macro definition's body, which is read where the macro
56
+ * is used, and nothing here expands macros; not after `\end{document}`, which TeX never reads.
49
57
  */
50
58
  export const includesOf = (t: ParsedTex): readonly Include[] =>
51
- visited(t.root, isDefinition)
59
+ visited(liveRoot(t), isDefinition)
52
60
  .filter(isNode)
53
61
  .flatMap((n) => (n.type === "macro" ? includeOf(t.src, n) : []));
54
62