paperlint 7.2.0 → 8.0.0

package/dist/new-paper.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"new-paper.d.ts","sourceRoot":"","sources":["../src/new-paper.ts"],"names":[],"mappings":"AA6BA,OAAO,EAGL,KAAK,UAAU,EAChB,MAAM,wBAAwB,CAAC;AAEhC,MAAM,MAAM,WAAW,GAAG,KAAK,GAAG,IAAI,CAAC;AACvC,eAAO,MAAM,OAAO,EAAE,SAAS,WAAW,EAAkB,CAAC;AAC7D,eAAO,MAAM,cAAc,EAAE,WAAmB,CAAC;AAEjD,8FAA8F;AAC9F,eAAO,MAAM,iBAAiB,QAE7B,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,YAAY,cAAc,CAAC;AAExC,eAAO,MAAM,WAAW,uBAAuB,CAAC;AAChD,eAAO,MAAM,WAAW,EAAE,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,CAG7D,CAAC;AAEF,mFAAmF;AACnF,eAAO,MAAM,gBAAgB,uBAAuB,CAAC;AAErD,eAAO,MAAM,QAAQ,GAAI,GAAG,OAAO,KAAG,CAAC,IAAI,WACb,CAAC;AAE/B;;;;;;;;;;;GAWG;AACH,wBAAgB,WAAW,CACzB,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,SAAS,UAAU,EAAE,GAC5B,MAAM,GAAG,IAAI,CAaf;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,sEAAsE;IACtE,QAAQ,CAAC,MAAM,EAAE,SAAS,GAAG,MAAM,CAAC;IACpC,uDAAuD;IACvD,QAAQ,CAAC,IAAI,CAAC,EAAE,SAAS,GAAG,SAAS,CAAC;CACvC;AAED,MAAM,MAAM,cAAc,GACtB;IACE,QAAQ,CAAC,EAAE,EAAE,IAAI,CAAC;IAClB,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,gDAAgD;IAChD,QAAQ,CAAC,KAAK,EAAE,OAAO,CAAC;IACxB,QAAQ,CAAC,KAAK,EAAE,SAAS,WAAW,EAAE,CAAC;CACxC,GACD;IAAE,QAAQ,CAAC,EAAE,EAAE,KAAK,CAAC;IAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAEpD;;;GAGG;AACH,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,MAAM,EAAE,CAEtE;AASD,gGAAgG;AAChG,MAAM,WAAW,YAAY;IAC3B,8EAA8E;IAC9E,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IAC7B;;;OAGG;IACH,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,MAAM,KAAK,MAAM,CAAC,GAAG,IAAI,CAAC;CAC3D;AAuED,mGAAmG;AACnG,MAAM,WAAW,eAAe;IAC9B,QAAQ,CAAC,gBAAgB,CAAC,EAAE,MAAM,CAAC;IACnC,QAAQ,CAAC,KAAK,CAAC,EAAE,YAAY,GAAG,IAAI,CAAC;IACrC,uFAAuF;IACvF,QAAQ,CAAC,MAAM,EAAE,SAAS,UAAU,EAAE,CAAC;CACxC;AAGD,wBAAgB,QAAQ,CACtB,UAAU,EAAE,MAAM,EAClB,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,WAAW,EACnB,IAAI,EAAE,eAAe,GACpB,cAAc,CAiChB;AAED,iGAAiG;AACjG,wBAAgB,cAAc,CAC5B,MAAM,EAAE,cAAc,EACtB,IAAI,EAAE,CAAC,CAAC,EAAE,MAAM,KAAK,MAAM,GAC1B,MAAM,EAAE,CAYV"}
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package/dist/new-paper.js

@@ -8,8 +8,7 @@
  * Every rule below is taken from a tool that already solved it (docs/prior-art/paper-folder-scaffolding.md):
  *   - the template is a FILE with a lookup order — the project's `<papers>/.template/<file>` first,
  *     the package's `templates/paper/<file>` second (Hugo's archetypes);
- *   - it NEVER overwrites: on an existing folder it adds only the missing required files, which is
- *     also the migration for an old folder that has only `paper.md` (`cargo init`);
+ *   - it NEVER overwrites: on an existing folder it adds only the missing required files (`cargo init`);
  *   - the name is validated, because it becomes a path and, through the hooks, a shell argument.
  *
  * The only substitution is `{{name}}` → the folder name. Nothing else in a template is touched.
@@ -22,8 +21,6 @@ import { fileURLToPath } from "node:url";
 import { CONFIG_FILE } from "#lib/paper-config";
 import { isRecord } from "./domain/record.js";
 import { venuesNamedBy, withoutVenues, } from "./domain/venue-name.js";
-export const FORMATS = ["tex", "md"];
-export const DEFAULT_FORMAT = "tex";
 /** The package's default templates. Read from disk, so they ship in the tarball (`files`). */
 export const PACKAGE_TEMPLATES = fileURLToPath(new URL("../templates/paper/", import.meta.url));
 /**
@@ -33,13 +30,10 @@ export const PACKAGE_TEMPLATES = fileURLToPath(new URL("../templates/paper/", im
  */
 export const OVERRIDE_DIR = ".template";
 export const STATUS_FILE = "PIPELINE-STATUS.md";
-export const SOURCE_FILE = {
-    tex: "paper.tex",
-    md: "paper.md",
-};
+/** A paper's source: LaTeX, one file at the paper's root. */
+export const SOURCE_FILE = "paper.tex";
 /** The flag that lets `paperlint new` create a folder whose name names a venue. */
 export const ALLOW_VENUE_NAME = "--allow-venue-name";
-export const isFormat = (v) => FORMATS.some((f) => f === v);
 /**
  * Why a name is refused, or null. `[a-z0-9._-]+` is the charset; a LEADING dot is refused on top
  * of it, because discovery skips dot-directories — a paper named `.x` would be created and then
@@ -67,17 +61,12 @@ export function nameProblem(name, venues) {
         `    if the venue really belongs in the name, rerun \`paperlint new\` with ${ALLOW_VENUE_NAME}`,
     ].join("\n");
 }
-/**
- * The files a paper folder must end up with: the scorecard, a source in `format` — unless it
- * already has a source in EITHER format, in which case that one stands — and `paperlint.json`.
- */
-export function wantedFiles(dir, format) {
-    return [...scorecardAndSource(dir, format), CONFIG_FILE];
-}
-function scorecardAndSource(dir, format) {
-    const hasSource = Object.values(SOURCE_FILE).some((f) => existsSync(join(dir, f)));
-    return hasSource ? [STATUS_FILE] : [STATUS_FILE, SOURCE_FILE[format]];
-}
+/** The files a paper folder must end up with: the scorecard, the source and `paperlint.json`. */
+export const WANTED_FILES = [
+    STATUS_FILE,
+    SOURCE_FILE,
+    CONFIG_FILE,
+];
 /**
  * The template's `paperlint.json` with the chosen venue written in. The template's `$comment`
  * explains how to choose one, so it goes once one is chosen. A template that is not plain JSON (a
@@ -114,7 +103,7 @@ function fromTemplate(file, { papersRoot, packageTemplates, name, venue, }) {
         return { ok: false, reason: `no template for ${file}: ${src} is missing` };
     const text = readFileSync(src, "utf8").split("{{name}}").join(name);
     const setClass = venue?.setClass ?? null;
-    if (file === SOURCE_FILE.tex && setClass !== null)
+    if (file === SOURCE_FILE && setClass !== null)
         return { ok: true, value: { file, text: setClass(text), from } };
     if (file !== CONFIG_FILE || venue === null)
         return { ok: true, value: { file, text, from } };
@@ -124,7 +113,7 @@ function fromTemplate(file, { papersRoot, packageTemplates, name, venue, }) {
         : edited;
 }
 // Documented in README.md#getting-started — update it when this changes.
-export function newPaper(papersRoot, name, format, opts) {
+export function newPaper(papersRoot, name, opts) {
     const { packageTemplates = PACKAGE_TEMPLATES, venue = null } = opts;
     const problem = nameProblem(name, opts.venues);
     if (problem)
@@ -135,7 +124,7 @@ export function newPaper(papersRoot, name, format, opts) {
         return { ok: false, reason: `${dir} exists and is not a directory` };
     const files = [];
     const toWrite = [];
-    for (const file of wantedFiles(dir, format)) {
+    for (const file of WANTED_FILES) {
         if (existsSync(join(dir, file))) {
             files.push({ file, status: "kept" });
             continue;

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package/dist/paper-files.d.ts

@@ -1,8 +1,8 @@
 /**
  * THE FILES PAPERLINT OWNS — read off its own config, and made the only thing ESLint may reach.
  *
- * paperlint's blocks name the files they lint (`PIPELINE-STATUS.md`, `paper.md`, `paper.tex`,
- * `reviews/*.md`, …). That list is the whole scope of `paperlint lint`, and this module turns it
+ * paperlint's blocks name the files they lint (`PIPELINE-STATUS.md`, `paper.tex`, `reviews/*.md`,
+ * …). That list is the whole scope of `paperlint lint`, and this module turns it
  * into two things ESLint understands:
  *
  * 1. **A global ignore of everything else** (`scopeToOwned`). Handing ESLint a directory is not
@@ -17,7 +17,7 @@
  * 2. **Each rule scoped to the files it was written for** (`ruleOwners` + `narrowToOwners`).
  *    One plugin NAME is bound to different plugin objects in different blocks: `paper` holds
  *    `stages`/`source`/`author-list` beside `PIPELINE-STATUS.md` and `typography` beside
- *    `paper.md`/`paper.tex`. So a consumer block that named `paper/source`
+ *    `paper.tex`. So a consumer block that named `paper/source`
  *    for every file under the papers directory reached `paper.tex`, where `paper` has no `source`
  *    — and ESLint threw `Could not find "source" in plugin "paper"` from inside `lintFiles`,
  *    after paperlint's own validation had (correctly) accepted the id. A block is therefore split
@@ -36,7 +36,7 @@
  * - a global-ignore pattern that matches a DIRECTORY hides everything inside it, so directories
  *   must be un-ignored (`!` + a pattern ending in a slash) before owned files can be;
  * - that un-ignores `node_modules/` and `.git/` too — ESLint's own defaults — so they are
- *   re-ignored after, or a `paper.md` inside a dependency would be linted;
+ *   re-ignored after, or a `paper.tex` inside a dependency would be linted;
  * - later global-ignore patterns win, across blocks, in config order;
  * - `files: [["a", "b"]]` matches a file only when BOTH patterns match.
  */

package/dist/paper-prose.d.ts

@@ -0,0 +1,17 @@
+import { type PaperDeps } from "./tex-paper.ts";
+/**
+ * A paper's body prose, one passage per paragraph, its section titles in document order, and the
+ * text of each file it is made of — `paper.tex` and every file it includes, once, named as the
+ * include names it — for what the body leaves out, such as captions.
+ */
+export interface PaperProse {
+    readonly body: string;
+    readonly headings: readonly string[];
+    readonly files: readonly {
+        readonly file: string;
+        readonly text: string;
+    }[];
+}
+/** The prose and the headings of the paper whose main file is `filename` with the text `src`. */
+export declare function paperProse(filename: string, src: string, deps: PaperDeps): PaperProse;
+//# sourceMappingURL=paper-prose.d.ts.map

package/dist/paper-prose.d.ts.map

@@ -0,0 +1 @@
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package/dist/paper-prose.js

@@ -0,0 +1,46 @@
+/**
+ * THE PROSE OF A paper.tex AS PLAIN TEXT — what `grade-paper-writing/prose-lint.mjs` measures.
+ *
+ * prose-lint counts sentences and words, and every metric it prints is a fraction of the word
+ * count. Read as raw text, a `.tex` puts the preamble, the `%` comments and an inline `filecontents`
+ * bibliography into that count (8127 "words" against about 4636 real ones on one paper), so every
+ * rate comes out roughly halved. This reads the paper the way the `tex/register` rule does: the
+ * includes spliced in (`readPaper`), then the body's prose as passages (`bodyProse` — the abstract
+ * to the back matter, without headings, captions, floats or code), each passage's sentences
+ * (`bodySentences`). A blank line separates two passages, so no sentence runs across them.
+ *
+ * A citation stands as `[1]` and a cross-reference as `1`, where they are set — not left out:
+ * prose-lint judges a sentence that ENDS on one (a wasted stress position) and counts references
+ * to other parts of the paper (`(Section 1)`), and both are invisible in a sentence the marks
+ * were cut out of. Math is left out; prose-lint counts no formula.
+ */
+import { bodySentences } from "./domain/register.js";
+import { CITATION, MATH, REFERENCE } from "./domain/sentences.js";
+import { runText } from "./domain/tex-document.js";
+import { readPaper } from "./tex-paper.js";
+/** A sentence's text with each mark as a reader would see it set, and math left out. */
+const rendered = (raw) => raw
+    .replaceAll(CITATION, "[1]")
+    .replaceAll(REFERENCE, "1")
+    .replaceAll(MATH, "")
+    .replace(/\s+/gu, " ")
+    .trim();
+/** The prose and the headings of the paper whose main file is `filename` with the text `src`. */
+export function paperProse(filename, src, deps) {
+    const { text, segments } = readPaper(filename, src, deps);
+    const passages = deps.latex
+        .bodyProse(text)
+        .map((p) => bodySentences([p])
+        .map((s) => rendered(s.raw))
+        .join(" "))
+        .filter((p) => p !== "");
+    return {
+        body: passages.join("\n\n"),
+        headings: deps.latex
+            .headings(text)
+            .filter((h) => h.command.kind === "heading" && h.argument === "title")
+            .map((h) => runText(h.title).replace(/\s+/g, " ").trim()),
+        files: [...new Map(segments.map((s) => [s.file, s.source])).entries()].map(([file, text]) => ({ file, text })),
+    };
+}
+//# sourceMappingURL=paper-prose.js.map

package/dist/paper-prose.js.map

@@ -0,0 +1 @@
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package/dist/structure.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"structure.d.ts","sourceRoot":"","sources":["../src/structure.ts"],"names":[],"mappings":"AA0BA,OAAO,KAAK,EAAE,eAAe,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAIpE,8EAA8E;AAC9E,KAAK,KAAK,GAAG,QAAQ,CAAC,eAAe,CAAC,CAAC;AAEvC;;;;;;GAMG;AACH,eAAO,MAAM,kBAAkB;;;;;CAK9B,CAAC;AAEF,gGAAgG;AAChG,wBAAgB,cAAc,CAC5B,SAAS,EAAE,eAAe,GAAG,KAAK,GAAG,SAAS,GAC7C,KAAK,GAAG,IAAI,CAGd;AAaD;;GAEG;AACH,wBAAgB,cAAc,CAC5B,KAAK,EAAE,SAAS,MAAM,EAAE,EACxB,SAAS,EAAE,eAAe,GAAG,KAAK,GAAG,SAAS,EAE9C,EAAE,GAAmB,EAAE,GAAE;IAAE,GAAG,CAAC,EAAE,MAAM,CAAA;CAAO,GAC7C,gBAAgB,EAAE,CAyCpB;AAcD,wBAAgB,eAAe,CAAC,QAAQ,EAAE,SAAS,gBAAgB,EAAE,GAAG,MAAM,CAO7E;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAC7B,QAAQ,EAAE,SAAS,gBAAgB,EAAE,GACpC,OAAO,EAAE,CAqBX"}

package/dist/structure.js

@@ -25,6 +25,7 @@
 import { readdirSync, existsSync } from "node:fs";
 import { join, relative, basename, isAbsolute, sep } from "node:path";
 import { CONFIG_FILE } from "#lib/paper-config";
+import { SOURCE_FILE } from "./new-paper.js";
 /**
  * The defaults are MEASURED against a live corpus of five paper directories, not picked by taste:
  * under them it passes in full — zero findings. The counter-case was run too: `paper.pdf` added to
@@ -33,9 +34,9 @@ import { CONFIG_FILE } from "#lib/paper-config";
  * byte-compared by the `paper/stages` rule anyway.
  */
 export const STRUCTURE_DEFAULTS = {
-    markers: ["PIPELINE-STATUS.md", "paper.tex", "paper.md", CONFIG_FILE],
+    markers: ["PIPELINE-STATUS.md", SOURCE_FILE, CONFIG_FILE],
     require: ["PIPELINE-STATUS.md"],
-    requireOneOf: [["paper.tex", "paper.md"]],
+    requireOneOf: [[SOURCE_FILE]],
     ignore: [],
 };
 /** The consumer's config over the defaults; `structure: false` turns the check off entirely. */
@@ -104,7 +105,7 @@ export function checkStructure(paths, structure,
  * The message NAMES THE CONSEQUENCE rather than restating the condition. "missing
  * PIPELINE-STATUS.md" without the second half reads as nitpicking about formatting; with it you
  * can see which checks the directory silently loses — the rules that read the scorecard; the rules
- * over `paper.md` / `paper.tex` still run.
+ * over `paper.tex` still run.
  */
 function whyMissingMatters(file, dirName) {
     if (file === "PIPELINE-STATUS.md")

package/dist/structure.js.map

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package/dist/types.d.ts

@@ -58,8 +58,6 @@ export interface Args {
     noHooks: boolean;
     /** `--paper <name>`: `init` creates this paper. */
     paper: string | null;
-    /** `--format tex|md` for `new` and `init --paper`. Validated by the command, not here. */
-    format: string | null;
     /** `--venue <preset>` for `new`: a shipped preset name, or a path to the project's own. */
     venue: string | null;
     /** `--kind <kind>` for `new`: one of the venue preset's kinds. */

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/docs/configuration.md

@@ -79,7 +79,7 @@ where your papers are, and writes `{ "papersDir": … }` only when that is not `
 `papersDir` already declared is kept, and nothing is measured or asked.
 
 **Under `papersDir`, only the files paperlint's own rules are written for are linted:**
-`PIPELINE-STATUS.md`, `paper.md`, `draft.md`, `paper.tex`, `reviews/*.md` and `siblings/*.md`.
+`PIPELINE-STATUS.md`, `paper.tex` (and the files it includes), `reviews/*.md` and `siblings/*.md`.
 Everything else — a paper's `repro/` scripts, vendored JavaScript, data files — is never handed to
 ESLint, so it cannot fail the run. A file you name on the command line that is not one of these is
 refused by name. `node_modules/`, `.git/` and `<papers>/.template/` are skipped.
@@ -328,8 +328,8 @@ can turn on a rule that is off by default, or change the severity of one that is
   A pattern ending in `/**` is the usual way to name one paper.
 - **Each rule reaches only the files it is written for.** A block with `"files": ["papers/**"]` and
   `"rules": { "paper/source": "warn" }` turns `paper/source` on for every `PIPELINE-STATUS.md` under
-  `papers/`; `paper/section-word` in the same block lands on every `paper.md`, `draft.md` and
-  `paper.tex`. You do not need to know which file a rule reads: your `files` narrow where it runs,
+  `papers/`; `paper/section-word` in the same block lands on every `paper.tex`. You do not need to
+  know which file a rule reads: your `files` narrow where it runs,
   never widen it. The [rule tables](rules.md) name each rule's file.
 - **A rule entry** is a severity (`"off"`, `"warn"`, `"error"`, or `0`/`1`/`2`), or a list whose
   first element is a severity and the rest are the rule's options.
@@ -354,16 +354,14 @@ and the real findings leave with it.
 
 ```json
 "structure": {
-  "markers":      ["PIPELINE-STATUS.md", "paper.tex", "paper.md", "paperlint.json"],
+  "markers":      ["PIPELINE-STATUS.md", "paper.tex", "paperlint.json"],
   "require":      ["PIPELINE-STATUS.md"],
-  "requireOneOf": [["paper.tex", "paper.md"]],
+  "requireOneOf": [["paper.tex"]],
   "ignore":       []
 }
 ```
 
-Those are the defaults; you only write the block to change them. `paper.md` is still in them
-because Markdown papers are deprecated but not yet removed
-([#57](https://github.com/zernie/paperlint/issues/57)). They were measured against a
+Those are the defaults; you only write the block to change them. They were measured against a
 real five-paper corpus rather than chosen — it passes with zero findings, while adding
 `paper.pdf` to `require` produces two findings on papers that are perfectly fine, which is why it
 is not there.
@@ -493,7 +491,7 @@ export default [
 It registers every rule paperlint ships, each turned off (`paperlint lint` is where they run), and
 the LaTeX language as `tex/latex` — use that instead of registering a `tex` plugin of your own, or
 ESLint refuses the config with `Cannot redefine plugin "tex"`, with or without the language. Without
-`texLanguage` it registers the rules only, for a config that lints markdown papers alone.
+`texLanguage` it registers the rules only.
 
 On the files paperlint lints it also turns off ESLint's report of unused disable directives: a
 directive naming a rule that is off suppresses nothing, and would be reported as unused in every such

package/docs/e2e.md

@@ -179,10 +179,6 @@ everything.
 - **macOS and Windows.** Locally these run on whatever machine you have. In CI `build-e2e` is a
   matrix over `ubuntu-latest` and `macos-latest`; Windows is not run anywhere, and `paperlint toolchain`
   refuses it.
-- **The rules, on a real document.** `fixtures/real-markdown-paper/` holds a published article and
-  a recorded baseline of what the rules say about it. That is a **lint** fixture, driven by a
-  harness — it does not go through the installed package. Wiring it into the install corpus is
-  open work, not something already done.
 - **The skills as behaviour.** The install run proves a skill arrived and that its paths resolve.
   Whether the agent then does the right thing with it is a different measurement, and it belongs
   to the harness tier of `vigiles`, not here.
@@ -199,5 +195,7 @@ PDF, its byte counts, the cross-check between them — and copies `fixtures/buil
 it so the LaTeX rules see LaTeX rather than a placeholder.
 
 ⚠️ **Every line of that corpus was written by somebody who already knew which rule would read it.**
-It keeps the stage machinery honest and it cannot tell you anything about false positives. That is
-what the real-article fixture is for, and why the two tiers are not substitutes.
+It keeps the stage machinery honest and it cannot tell you anything about false positives. So the
+run then adds one accepted paper from `fixtures/accepted-papers/` (`secure-acsac24`) and holds the
+installed binary to that paper's recorded `baseline.json` — the same recording
+`fixtures/accepted-papers/accepted-papers.test.ts` holds the repository's own `run` to.

package/docs/prior-art/paper-folder-scaffolding.md

@@ -16,10 +16,6 @@ still left to a human copying something by hand?**
 > - `--hooks=local` is **deferred, not implemented**; `init` refuses it by name.
 >
 > Where the build differed from this text, it is listed at the end, in § 8.
->
-> **Later, 2026-09-24:** Markdown papers are deprecated and being removed
-> ([#57](https://github.com/zernie/research-paper-pipeline/issues/57)). Where this record mentions
-> `paper.md` or `--format md`, it describes the tool as it was when written.
 
 1. A paper folder needs a `PIPELINE-STATUS.md`, and today nothing makes it — you copy a template.
    Should there be a command, and where should per-paper settings live: in a file in every paper
@@ -66,11 +62,11 @@ changes, no migration.
   (`src/init.ts:448`), offers a CI workflow, reports missing programs, and **prints** the two
   `/plugin` lines (`src/init.ts:257-258`). It never creates the papers directory and never creates
   a paper.
-- **A directory is a paper** if it holds any of `PIPELINE-STATUS.md`, `paper.tex`, `paper.md`,
-  `venue.json` (`src/build.ts:41-46`, `src/structure.ts:39`). Detection is generous.
-- **`rpp lint` requires `PIPELINE-STATUS.md`** in every such directory, plus one of
-  `paper.tex`/`paper.md` (`src/structure.ts:38-43`). A paper with only `paper.md` fails the very
-  first `rpp lint` with `missing PIPELINE-STATUS.md` — that is the README's own "First run" example.
+- **A directory is a paper** if it holds any of `PIPELINE-STATUS.md`, `paper.tex`, `venue.json`
+  (`src/build.ts`, `src/structure.ts`). Detection is generous.
+- **`rpp lint` requires `PIPELINE-STATUS.md`** in every such directory, plus `paper.tex`
+  (`src/structure.ts`). A paper with only `paper.tex` fails the very first `rpp lint` with
+  `missing PIPELINE-STATUS.md` — that is the README's own "First run" example.
 
 ⚠️ **One inconsistency worth knowing.** `paper/stages` says in its header that a missing `stages`
 field is _legitimate_ — "a paper that has shipped nothing owes nothing" (`eslint-rules/paper-stages.mjs:24-27`) —
@@ -101,7 +97,7 @@ human to copy and tick them.
 ## 2. What `PIPELINE-STATUS.md` actually holds — the split
 
 Read from the template (`skills/paper-pipeline/references/pipeline-status-template.md`), the
-fixtures (`fixtures/paper-stages/*`, `fixtures/real-markdown-paper/`) and four real files in the
+fixtures (`fixtures/paper-stages/*`) and four real files in the
 owner's corpus. Real sizes: 86, 95, 1 057 and 1 301 lines. In the two big ones the machine-read
 part is the first 10–25 lines of front matter; the rest is a dated journal of decisions. (No
 content of those files is reproduced here.)
@@ -110,7 +106,6 @@ content of those files is reproduced here.)
 | ------------------------------------------------------------------------------- | --------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
 | paper short name / title                                                        | **config**            | human, once — `rpp new` can prefill from the folder name                                                                                                                  |
 | venue, deadline, blind model (the `Venue:` header line)                         | **config**            | human; changes when the paper is re-targeted                                                                                                                              |
-| format (`.tex` vs `.md`)                                                        | **derived**           | from which source file exists                                                                                                                                             |
 | venue profile, paper kind, pdf path (a separate `venue.json` in one real paper) | **config**            | human; already a per-paper file in practice                                                                                                                               |
 | typography allowance (`typographyDebt`)                                         | **config**            | human, but it sits in the root key keyed by path today                                                                                                                    |
 | `stages[]`: `stage`, `date`, `venue`                                            | **state**             | **tool** at the moment of freezing (`rpp freeze`, a later step)                                                                                                           |
@@ -172,9 +167,9 @@ parsing markdown — the fix is to ship the template as its own file and have th
    (entry front matter), Cargo (member `Cargo.toml`), Eleventy (directory data). The tools that put
    per-unit settings in the root (ESLint `files`, Vale sections) are _linters of code_, where units
    have no identity of their own — a paper does.
-3. **Front matter of the source itself is not available to rpp**, because half the papers are
-   LaTeX, which has no YAML front matter. Quarto and Astro can use the document's own header only
-   because every document is markdown. So rpp needs a per-paper **file**, and it already has one:
+3. **Front matter of the source itself is not available to rpp**, because a paper is LaTeX, which
+   has no YAML front matter. Quarto and Astro can use the document's own header only because their
+   documents carry one. So rpp needs a per-paper **file**, and it already has one:
    `PIPELINE-STATUS.md`, whose front matter is exactly where Quarto would put these fields.
 4. **Root-level keys that are really per-paper** (`typographyDebt: { "papers/my-paper": … }`,
    `src/cli.ts:104`) are the ESLint-overrides style. They work, but they break silently on a folder
@@ -209,9 +204,9 @@ written once at freeze time, then checked forever — and today a human types it
 
 ### Commands
 
-**`rpp new <name> [--format tex|md]`** — creates `<papers>/<name>/` with:
+**`rpp new <name>`** — creates `<papers>/<name>/` with:
 
-- `paper.tex` or `paper.md` (a minimal stub; `--format` defaults to `tex` — ask when interactive);
+- `paper.tex` (a minimal stub);
 - `PIPELINE-STATUS.md` from a **template file** shipped in the package, with the name filled in and
   **no** `stages` field (a new paper has shipped nothing — `paper-stages.mjs:24`).
 
@@ -228,7 +223,7 @@ Rules for it, each taken from a tool above:
 **Later step, NOT part of this change — `rpp freeze <paper> <stage> [--pdf <file>] [--date <iso>]`**,
 the release-please move, recorded so the design is not lost:
 
-- copies the built pdf and the source into `versions/<date>-<stage>.pdf|.tex|.md`;
+- copies the built pdf and the source into `versions/<date>-<stage>.pdf|.tex`;
 - **appends** one record to `stages` with `stage`, `date`, `pdf`, `bytes`, `source`, `sourceBytes`;
 - refuses a stage outside `STAGES` (`paper-stages.mjs:53`) and a date/stage pair already present.
 
@@ -259,15 +254,15 @@ the skills tell agents to update them.
 
 - **Existing folders with a `PIPELINE-STATUS.md`** (the owner's four): nothing changes. Their
   front matter is already the per-paper carrier; a later `rpp freeze` would append to their lists.
-- **Existing folders without one** (a draft that has only `paper.md`): `rpp new <that-name>` fills
-  the missing file and touches nothing else.
+- **Existing folders without one** (a draft that has only `paper.tex`): `rpp new <that-name>`
+  fills the missing file and touches nothing else.
 - **No `rpp migrate` is needed** for this recommendation. One would be needed only if the carrier
   later moves to `paper.yml`.
 
 ### The smallest first step
 
 Move the template out of the code fence into its own file (say
-`templates/paper/PIPELINE-STATUS.md`, plus `paper.tex` and `paper.md` stubs), make
+`templates/paper/PIPELINE-STATUS.md`, plus a `paper.tex` stub), make
 `pipeline-status-template.md` point at it instead of containing it, and add `rpp new` that copies
 it. Then the README sentence "Nothing generates it and no command refreshes it" becomes "`rpp new`
 creates it". No rule changes, no consumer migration. `rpp freeze` is step two; `init` offering to
@@ -435,13 +430,13 @@ unset **and** no `--yes`._
 
 ### What `init` asks, and what it does without asking
 
-| decision          | human at a terminal                                                                                         | agent / CI / `--yes`                                                                              | flag                                    |
-| ----------------- | ----------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------- | --------------------------------------- |
-| papers directory  | asked only if several candidates (today)                                                                    | first candidate, said so (today)                                                                  | `init <dir>` then the key               |
-| **hooks**         | "Wire the three paper hooks into `.claude/settings.json` (committed, shared)? **[Y/n]**"                    | **yes** — the guard is what the package is for, the edit is idempotent and shows up in `git diff` | `--no-hooks` (`--hooks=local` deferred) |
-| CI workflow       | "Add a GitHub Actions workflow? **[y/N]**" (today)                                                          | **no** (today) — it writes into `.github/` and spends Actions minutes, which are metered          | `--ci` / `--no-ci`                      |
-| first paper       | only when the papers dir holds no paper: "Create a first paper? name: [skip]" then "format: tex / md [tex]" | **no**, unless `--paper <name>` is given                                                          | `--paper <name> --format tex\|md`       |
-| external programs | reported (today)                                                                                            | reported (today)                                                                                  | —                                       |
+| decision          | human at a terminal                                                                      | agent / CI / `--yes`                                                                              | flag                                    |
+| ----------------- | ---------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------- | --------------------------------------- |
+| papers directory  | asked only if several candidates (today)                                                 | first candidate, said so (today)                                                                  | `init <dir>` then the key               |
+| **hooks**         | "Wire the three paper hooks into `.claude/settings.json` (committed, shared)? **[Y/n]**" | **yes** — the guard is what the package is for, the edit is idempotent and shows up in `git diff` | `--no-hooks` (`--hooks=local` deferred) |
+| CI workflow       | "Add a GitHub Actions workflow? **[y/N]**" (today)                                       | **no** (today) — it writes into `.github/` and spends Actions minutes, which are metered          | `--ci` / `--no-ci`                      |
+| first paper       | only when the papers dir holds no paper: "Create a first paper? name: [skip]"            | **no**, unless `--paper <name>` is given                                                          | `--paper <name>`                        |
+| external programs | reported (today)                                                                         | reported (today)                                                                                  | —                                       |
 
 Why the hooks default is "yes" even without asking, while CI is "no": the rule `install.md` already
 adopted from Playwright is _"ask only about what cannot be guessed or is expensive"_. Installing a
@@ -495,8 +490,8 @@ Recorded so the design and the code do not quietly disagree.
 - **`rpp new` lints the new folder itself** (`rpp lint <papers>/<name>`), so the structure check —
   which looks at the subdirectories of the path it is given — does not run there; the folder was
   just made with the required files, so there is nothing for it to find.
-- **Interactive `init` asks "Create a first paper? name: [skip]" and then the format** only when the
-  name was given and `--format` was not.
+- **Interactive `init` asks "Create a first paper? name: [skip]"** only when the papers directory
+  holds no paper.
 
 ## Sources checked
 

package/docs/rules/tex/claim-provenance.md

@@ -68,7 +68,6 @@ any other rule.
   3 of the model_) is read as a quantity, and so is the number of a name that opens the sentence
   (_Claude 3 fails …_).
 - Whether a count followed by a plural noun is really the sample (_3 times faster_ passes as one).
-- Markdown papers (`paper.md`): it reads the LaTeX parse tree only.
 
 ## How to fix
 

package/docs/rules.md

@@ -13,8 +13,8 @@ reads and when it fails. Errors fail `paperlint lint`; warnings print and do not
 | [`cycle/port-done`](rules/cycle/port-done.md)                         | error                                        | `paper.tex` → `paperlint.json` (`cycles`) → the preset's `template` | the current cycle still declares `"phase": "porting"` (which silences the venue's format rules) while the `\documentclass` is already the venue's template: the port is done, drop the phase — [page](rules/cycle/port-done.md)                                                                                                                                                                                                                                                                                                                        |
 | [`paper/folder-venue-leftover`](rules/paper/folder-venue-leftover.md) | warn                                         | the folder name → `paperlint.json`                                  | the paper's folder is named after another shipped venue than the one it extends (`papers/aisec-2026/` for a paper now set for AIDC); reported on `PIPELINE-STATUS.md` — [page](rules/paper/folder-venue-leftover.md)                                                                                                                                                                                                                                                                                                                                   |
 | `paper/author-list`                                                   | error                                        | `paper.tex` → `_build/references.json`                              | an entry's authors are not those of the version it cites — typically the arXiv preprint's list under a published venue. Checked online by `paperlint build` (DBLP), reported on the entry's own line                                                                                                                                                                                                                                                                                                                                                   |
-| `paper/section-word`                                                  | warn                                         | `paper.tex` and its body files, `paper.md`                          | `§` or `\S\ref` instead of the word Section. **Fixable:** `--fix` writes `Section~\ref{…}` / `Section 5`                                                                                                                                                                                                                                                                                                                                                                                                                                               |
-| `paper/leading-zero`                                                  | warn                                         | `paper.tex` and its body files, `paper.md`                          | a decimal below 1 without its leading zero (`.05` instead of `0.05`, IEEE / ISO 80000-1 style), counted only where the reader sees it — prose, math and table cells, not macro options, column specs, comments, code or tikz. A number right after `¶` or `§` (`¶¶.42`) is a paragraph designator and is not reported; in a paragraph that cites numbers that way, another bare decimal is reported without a fix, with the zero as a suggestion. **Fixable**                                                                                          |
+| `paper/section-word`                                                  | warn                                         | `paper.tex` and its body files                                      | `§` or `\S\ref` instead of the word Section. **Fixable:** `--fix` writes `Section~\ref{…}` / `Section 5`                                                                                                                                                                                                                                                                                                                                                                                                                                               |
+| `paper/leading-zero`                                                  | warn                                         | `paper.tex` and its body files                                      | a decimal below 1 without its leading zero (`.05` instead of `0.05`, IEEE / ISO 80000-1 style), counted only where the reader sees it — prose, math and table cells, not macro options, column specs, comments, code or tikz. A number right after `¶` or `§` (`¶¶.42`) is a paragraph designator and is not reported; in a paragraph that cites numbers that way, another bare decimal is reported without a fix, with the zero as a suggestion. **Fixable**                                                                                          |
 | `paper/figure-ref-style`                                              | warn                                         | `paper.tex` and its body files                                      | `Fig.~\ref` and `Figure~\ref` mixed in one document; each minority occurrence is reported. **Fixable:** `--fix` writes the majority form                                                                                                                                                                                                                                                                                                                                                                                                               |
 | `bib/reachable-entry`                                                 | warn                                         | `paper.tex` (its `filecontents` bibliography)                       | an entry has no doi, url or arXiv id — a reader has nothing to follow. Reported on the entry; no fix, the link has to be looked up                                                                                                                                                                                                                                                                                                                                                                                                                     |
 | `paper/cite-exists`                                                   | error                                        | `paper.tex` → `_build/references.json`                              | an entry's doi or arXiv id resolves to nothing, or to a different work. Checked online by `paperlint build`; a work that was merely not found is not a finding                                                                                                                                                                                                                                                                                                                                                                                         |
@@ -268,10 +268,6 @@ The paper body is `paper.tex`, and it gets three rules of its own: `paper/typogr
 run on it but judge the files beside it. The scorecard and the review notes are Markdown files, and
 the other five rules read those.
 
-A Markdown body (`paper.md`, or `draft.md`) is still read today and gets only the two `paper/`
-rules, which is why they list it above. Markdown papers are deprecated and being removed
-([#57](https://github.com/zernie/paperlint/issues/57)); do not start a new one.
-
 ## The scorecard's `bytes:` and `sourceBytes:`
 
 **When you submit,** copy the PDF and `paper.tex` you sent into the paper's `versions/` folder and

package/eslint-rules/latex-language.harness.mjs

@@ -27,10 +27,10 @@
  * registry) through this language and froze their finding counts on three real papers
  * (35 · 52 · 15 at the 2026-08-27 measurement, later 32 · 53 · 20 after captions became
  * visible on 2026-09-06). None of those modules was extracted, and the papers are private, so:
- *   - the "rules see LaTeX the way they saw markdown" half is GONE. What is left proves the
+ *   - the "rules read the projection correctly" half is GONE. What is left proves the
  *     projection is correct, not that a downstream rule consumes it correctly;
- *   - the config half that checked rule-set PARITY between `.tex` and `paper.md`, and the
- *     list of rules explicitly switched `off` on `.tex` WITH A REASON, is GONE with the rules;
+ *   - the config half that listed the rules explicitly switched `off` on `.tex` WITH A
+ *     REASON is GONE with the rules;
  *   - the only rule that still runs through this language here is `tex/future-promise`, and it
  *     reads the file from disk rather than the projection — so end-to-end it proves the
  *     language parses and dispatches, not that the projection is what a rule reads.