paperlint 2.0.0

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Files changed (762) hide show
  1. package/.github/dependabot.yml +72 -0
  2. package/.github/workflows/ci.yml +297 -0
  3. package/.github/workflows/dependabot-automerge.yml +70 -0
  4. package/.github/workflows/pr-title.yml +59 -0
  5. package/.github/workflows/release.yml +54 -0
  6. package/CLAUDE.md +598 -0
  7. package/CONTRIBUTING.md +159 -0
  8. package/LICENSE +21 -0
  9. package/README.md +240 -0
  10. package/action.harness.mjs +287 -0
  11. package/action.mutations.mjs +162 -0
  12. package/action.yml +138 -0
  13. package/bin/rpp.mjs +43 -0
  14. package/dist/action-ref.d.ts +12 -0
  15. package/dist/action-ref.d.ts.map +1 -0
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  18. package/dist/adapters/banal/failure.d.ts +73 -0
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  28. package/dist/adapters/banal/install.js +15 -0
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  30. package/dist/adapters/banal/invocation.d.ts +48 -0
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  38. package/dist/adapters/banal/output.d.ts +27 -0
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  54. package/dist/adapters/banal/settings.d.ts +18 -0
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  58. package/dist/adapters/banal/xml.d.ts +48 -0
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  60. package/dist/adapters/banal/xml.js +67 -0
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  72. package/dist/adapters/memory/index.js +79 -0
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  74. package/dist/adapters/node/files.io.d.ts +3 -0
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  82. package/dist/adapters/node/index.d.ts +25 -0
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  90. package/dist/adapters/node/workspace.io.d.ts +4 -0
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  126. package/dist/domain/paths.d.ts +5 -0
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  130. package/dist/domain/result.d.ts +23 -0
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  134. package/dist/domain/sha256.d.ts +7 -0
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  138. package/dist/domain/text.d.ts +6 -0
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  142. package/dist/engine.d.ts +93 -0
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  158. package/dist/init.d.ts +201 -0
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  160. package/dist/init.js +579 -0
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  162. package/dist/latex-log.d.ts +80 -0
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  170. package/dist/link-skills.d.ts +51 -0
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  174. package/dist/new-paper.d.ts +48 -0
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  178. package/dist/pdf-facts.d.ts +44 -0
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  186. package/dist/ports/download.d.ts +9 -0
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  190. package/dist/ports/files.d.ts +11 -0
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  242. package/docs/prior-art/paper-folder-scaffolding.md +538 -0
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@@ -0,0 +1,285 @@
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+ // Compiled to SKILL.md by `vigiles compile`. Edit THIS file, never the markdown.
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+ //
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+ // Adopted 2026-08-17 (batch 3). Body carried over VERBATIM so the compiled diff shows
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+ // only what the compiler adds. No `disallowedTools` fence yet — the field landed on
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+ // `SkillSpec` in vigiles branch `claude/skill-disallowed-tools` and is not in a release
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+ // this repo installs, so writing one here would not compile.
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+ import { experimental_skill } from "vigiles/spec";
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+
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+ export default experimental_skill({
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+ name: "sweep-design-space",
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+ description:
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+ "Find a real MECHANISM for a problem — sweep the design space across type systems, formal verification, functional programming, capabilities, specification-by-example, data integrity, authoring UX, other professions (aviation/law/audit), and historical ancestors in SE — instead of circling the same two or three obvious options. Use when the deliverable needs a solution rather than a measurement, when the last few proposals all rhymed with each other, or when the user says \"your options are stale / you're thinking narrowly / think fresh\". Encodes the hard filters that kill most candidates (does it re-require the thing already measured as unworkable? is it occupied? who writes the formalization? does it demand a new format? unrepresentable or merely detectable?) and the ladder pattern for when one mechanism can't cover the range. Distinct from research-ideate (validates ONE idea you already have), map-prior-work (finds competitors for a claim), and analyze-sibling-paper (deep-reads one rival) — this one GENERATES candidate mechanisms and filters them.",
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+ context: "fork",
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+ tools: [
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+ "WebSearch",
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+ "WebFetch",
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+ "Read",
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+ "Write",
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+ "Grep",
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+ "Glob",
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+ "Bash",
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+ "Agent",
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+ ],
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+ body: `
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+ # sweep-design-space — stop circling, sweep
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+
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+ ## Run me
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+
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+ 🔴 FIRST, before any other step:
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+
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+ \`\`\`
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+ node .claude/skills/paper-pipeline/scripts/announce.mjs sweep-design-space <dir>
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+ \`\`\`
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+
35
+ An advisory pass cannot be observed failing — silence is both its error state and its normal
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+ state — so starting is an event, and events get written down.
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+
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+ The \`<dir>\` argument is **optional in spirit**: this skill can run before a paper directory exists, so
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+ pass whichever directory the work lives in, or \`.\`. The ledger row is written either way, and a plain
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+ dot is more honest than an invented path.
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+
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+ A model asked for "a solution" returns the three designs nearest its training prior, then variations of
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+ those, then variations of the variations. The user experiences this as *"you are thinking very narrowly"* —
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+ and they are right. The fix is not to think harder in place; it is to **sweep named source domains on
45
+ purpose** and filter hard.
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+
47
+ Grounding lesson (2026-07-29, \`the reference paper\`): four consecutive proposals were reformulations of
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+ one idea ("check the prose"), and two of them turned out to be **already shipped in production** by
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+ other people. The design space was never actually swept; it was sampled from memory.
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+
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+ ## When it fires
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+
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+ - The task needs a **mechanism**, not a measurement, and the mechanism isn't obvious.
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+ - Your last two or three proposals rhyme with each other.
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+ - The user pushes back with *"your options are stale / you're seeing only old solutions / think fresh"*.
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+ - A measurement phase just finished and the paper/product needs a constructive half.
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+ - 🔴 **You are about to recommend the first design you thought of.** That alone is the trigger.
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+
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+ ## How to run it
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+
61
+ ### 1. State the defect as a STATE, not as a wish
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+ Not "we want rules to be enforced". Write the exact state that must not exist:
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+ > *a rule asserts an enforcement that nothing provides.*
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+
65
+ Everything downstream is judged by whether it makes **that state** impossible.
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+
67
+ ### 2. Write the hard filters BEFORE generating
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+ Filters written after generation get bent to save a favourite. Standard ones — keep the ones that apply:
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+
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+ - **🔴 Does it re-require the thing you already measured as unworkable?** The sharpest filter and the
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+ easiest to violate. In the grounding case, prose-to-checker synthesis was measured leaking at
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+ **84–96%** — and half the proposed designs still began with *"parse the prose"*. If your evidence
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+ says X doesn't work, a design that starts with X is dead **regardless of how elegant the rest is**.
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+ - **Unrepresentable or merely detectable?** "We check for it afterwards" is a different (weaker) claim
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+ than "it cannot occur". Say which one honestly.
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+ - **Who produces the formalization — a model or a human?** This, not "is a model involved", is what
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+ predicts leakage. Model-synthesized formalization leaks; human-written formalization does not leak,
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+ it is merely expensive. Sort candidates by this.
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+ - **Adoption cost.** Does it require a new format, a migration, or a new file? Count the artifacts
80
+ already in the wild that would have to move. A design requiring migration of a large installed base
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+ has near-zero adoption regardless of merit.
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+ - **Scope honesty.** Which fraction of the real population does it cover, and does it *silently* cover
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+ nothing for the rest? Force each candidate to say "for class X it is silent."
84
+
85
+ ### 3. Sweep the catalog — the point of this skill
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+ Take the groups below. For each, generate **3 candidates whose MECHANISMS differ** (three phrasings of
87
+ one idea is a failed group). Delegate to a subagent with **no thread context** — the thread is exactly
88
+ what anchors you — and hand it: the defect state, the hard filters, the measured constraints, and the
89
+ **already-considered list**.
90
+
91
+ 🔴 **Hand that list as "considered, and here is exactly why each was set aside" — never as a bare
92
+ ban.** A blanket prohibition is the wrong instrument, because some of those options were set aside
93
+ for a *bad* reason, and a *modification* of a rejected option is often the best thing in the sweep.
94
+ So the instruction to the agent is two-sided:
95
+
96
+ - returning a considered option **unchanged** is a failure — that is the laziness the list exists to
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+ prevent;
98
+ - returning it **because you can attack the stated reason it was rejected**, or with a modification
99
+ that survives that reason, is a **first-class result** — say so explicitly in the brief.
100
+
101
+ This shape does something a ban cannot: it surfaces bad rejections. In the grounding session, one
102
+ option was discarded with the objection *"the generated file can still be hand-edited"* — an objection
103
+ already solved, years earlier, by a checksum on the generated section. Under a bare ban that option
104
+ stays dead forever, killed by a wrong reason nobody re-examines. **Record the reason next to every
105
+ retired option precisely so it can be attacked later.**
106
+
107
+ ### 4. Occupancy check BEFORE you fall in love
108
+ Every surviving candidate goes through a refutation-framed occupancy pass (*"find who already did
109
+ this"*, not *"confirm it's free"*). In the grounding case this killed the front-runner: the
110
+ \`enforced-by:\` tag design was **already shipped** — CI blocking PRs, reference resolution in Rust,
111
+ across several independent projects. "I don't know of such work" ≠ "no such work". Search GitHub code
112
+ search, not only papers: practice ships years before it is written up.
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+
114
+ ### 5. Red-team the survivor
115
+ Separate subagent, framed to **break** it. See the paper corpus's own refutation rules (\`CLAUDE.md\` beside the papers).
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+
117
+ ### 6. Save to the repo
118
+ A swept design space that lives only in a chat is re-swept from scratch next month. Write the map —
119
+ axes, cells, occupancy verdicts, what kills each — as a file, and record **which candidates were
120
+ retired and why**, so they are not proposed again.
121
+
122
+ ---
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+
124
+ ## The catalog — source domains, with constructs named
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+
126
+ Do not treat this as exhaustive; it is a floor, so the agent starts from named constructs instead of
127
+ inventing the list each time. Add groups when the problem calls for them.
128
+
129
+ ### A. Type systems and language design
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+ Smart constructors · newtype and phantom types · GADTs · **typestate** · linear and affine types
131
+ (a permission that is *consumed*) · refinement types · totality checking · effects in the type ·
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+ **parse-don't-validate** · make illegal states unrepresentable · instance resolution as a gate
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+ (the operation *doesn't exist* when there is no backend for it).
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+
135
+ ### B. Formal verification
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+ Coq · Lean · **TLA+ and Alloy** (model the *process*, not the code) · model checking · SMT ·
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+ **satisfiability as a meaningfulness test** (a constraint that removes no models is vacuous — a
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+ mechanical vacuity check) · refinement (does the implementation refine the spec) · proof-carrying
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+ artifacts · Design-by-Contract · **blame** (Findler & Felleisen — who is at fault at the boundary).
140
+
141
+ ### C. Functional programming
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+ Free monads and DSL-as-data (one AST, many interpreters) · tagless-final · **session types**
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+ (protocols as types — the natural home for "order of operations" rules) · algebraic effects ·
144
+ optics · **monoids and folds** (how do rules compose, merge, override?) · lattices and semilattices
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+ (CRDT-style merge without conflict) · catamorphisms · **Curry–Howard** (rule as type, proof as value) ·
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+ property laws · denotational semantics (a rule *is* the set it forbids; empty set = vacuous).
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+
148
+ ### D. Capabilities and systems
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+ Capability-based security · **reference monitor with complete mediation** · principle of least
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+ authority · object capabilities · **grants instead of prohibitions** (if the file can only *grant*,
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+ "don't do X" has no syntax) · sandboxing · seccomp/eBPF · information-flow control · taint.
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+
153
+ ### E. Testing and specification by example
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+ Property-based testing · metamorphic relations · golden/approval tests · **mutation testing as an
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+ admission criterion** (a rule that kills no mutant is not admitted) · executable specifications ·
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+ example pairs as the artifact with prose as caption (machine never reads the prose) ·
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+ **A/B measurement of effect** (treat the artifact as opaque and measure whether it changes outcomes —
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+ the one way to take unparseable prose seriously without parsing it).
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+
160
+ ### F. Data integrity and databases
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+ Constraints · **\`ADD CONSTRAINT\` validates existing rows** (you cannot add a constraint your current
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+ data violates — near-universal in databases, near-absent everywhere else) · \`NOT NULL\` + foreign keys ·
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+ schema and migrations · \`NOT VALID\` with a deadline · provenance and lineage · event sourcing ·
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+ **store the thing as data with the human-readable file as a view**.
165
+
166
+ ### G. Human–system interaction (authoring)
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+ Asymmetric cost (make the strong claim expensive and the weak one one click) · forced choice with no
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+ escape hatch · **changing the default** rather than adding a gate · feedback at the moment of writing
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+ (live "this would have matched: 0") · progressive disclosure · single entry point (the artifact can
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+ only be created *from* an incident, never from imagination) · what code review, commit hooks and IDE
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+ hints actually taught us about compliance.
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+
173
+ ### H. Other professions — how they make an unenforceable norm unwritable
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+ - **Aviation:** Minimum Equipment List — a defect is permitted only *with* a compensating procedure
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+ and a **repair deadline** by category; expiry is automatic. Also checklists, and why they work.
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+ - **Law:** *lex imperfecta* — an obligation with no sanction is a recognized category, not an
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+ oversight. **Rules vs standards** (Kaplow 1992) — the ex-ante/ex-post distinction, half a century old.
178
+ Adjudicator: a standard must name who decides.
179
+ - **Audit/finance:** SOX controls — owner + frequency + **evidence artifact**, and two separate tests
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+ (*design* and *operating effectiveness*). "The control exists" stops being a state; there are three.
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+ - **Medicine:** protocols, contraindications, checklists, and the distinction between guideline and
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+ protocol.
183
+ - **Safety standards:** MISRA (**decidable/undecidable** is an official per-rule label), DO-178C DAL
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+ A–E, ISO 26262 ASIL, Common Criteria EAL — industries that already formalized *how strongly backed*
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+ something is.
186
+ - **Construction codes, military ROE, accounting standards** — same question, different centuries.
187
+
188
+ ### I. 🔴 Historical ancestors in software engineering
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+ **Assume the problem is old.** In the grounding case, a "novel" controlled-language idea turned out to
190
+ be a 1980s aerospace standard, and its ladder had been published in *Computational Linguistics* in 2014.
191
+ Look here **before** generating anything:
192
+
193
+ - **Gradual typing** — the canonical template for coexisting checked and unchecked in one artifact,
194
+ with an explicit boundary and blame, adopted across a huge installed base *because* it did not
195
+ require migration. If your problem is "some items are backed and some are not, and we cannot move
196
+ everyone", this is the closest ancestor that exists.
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+ - **Gradual verification**, gradual refinement types.
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+ - **Design by Contract** (Eiffel) and contract blame (Racket).
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+ - **JML · SPARK Ada · ACSL · Dafny** — and specifically **SPARK's stone → bronze → silver → gold →
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+ platinum**: a shipped, mechanically-defined ladder of assurance. Steal the shape.
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+ - **Aspect-oriented programming** — cross-cutting requirements declared away from the code, and
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+ **why it failed** (the failure is more instructive than the successes).
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+ - **lint (Johnson, 1978)** — the original answer to "a rule the compiler does not check".
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+ - **Assertions** (Floyd, Hoare) and how they became normal.
205
+ - **Literate programming**, doctest, executable documentation.
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+ - **Requirements engineering** — *testable requirement* as a recognized category, traceability,
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+ EARS, IEEE 830.
208
+
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+ ### J. Migration and coexistence strategies
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+ Not a mechanism but a shape most candidates need: strangler fig · feature flags · \`NOT VALID\`
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+ constraints · gradual typing's boundary · deprecation with deadlines · advisory-then-enforcing rollout
212
+ (how linters actually ship a new rule) · opt-in tiers.
213
+
214
+ ---
215
+
216
+ ## The ladder pattern
217
+
218
+ When no single mechanism covers the range — the usual case — the answer is often a **graded scale**
219
+ rather than one gate. A ladder is only worth anything if every rung is:
220
+
221
+ 1. **decided mechanically** — no reading, no judgment, no model interpreting anything;
222
+ 2. **strictly stronger** than the rung below;
223
+ 3. **precedented** — name the ancestor (SPARK levels, DAL, MISRA decidable/undecidable, gradual typing's
224
+ typed/untyped boundary). A ladder with invented rungs is a taxonomy, and taxonomies are usually
225
+ occupied.
226
+
227
+ 🔴 And check whether the *ladder itself* is occupied for your object. Controlled-language scales and
228
+ assurance levels already exist; the question is whether anyone has carried them to your problem.
229
+
230
+ ---
231
+
232
+ ## Record the verdict
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+
234
+ 🔴 LAST step, once the deliverable exists:
235
+
236
+ \`\`\`
237
+ node .claude/skills/paper-pipeline/scripts/ledger.mjs record sweep-design-space <dir> FINDING <count> <report-path>
238
+ node .claude/skills/paper-pipeline/scripts/ledger.mjs record sweep-design-space <dir> ABSTAINED <reason> "<one line>"
239
+ \`\`\`
240
+
241
+ 🔴 **There is no PASS.** A sweep that turns up survivors has not certified anything; it has found
242
+ candidates, and candidates are findings.
243
+
244
+ **FINDING** — the sweep produced something to act on; \`<count>\` is the number of survivors and
245
+ \`<report-path>\` the sweep, including the groups that yielded nothing. Add \`--blocking\` when the
246
+ whole sweep died on the filters — that is the loudest thing this skill can say.
247
+ **ABSTAINED** — \`no-witness\`: the sweep ran and neither found a survivor nor established that none
248
+ exists. \`blocked\`: there was no problem statement to sweep against.
249
+
250
+ The skill's own rules already say negative results count. The ledger is how that survives the session:
251
+ a recorded finding names the groups that were swept, so the next sweep starts from named constructs
252
+ instead of from memory — which is the failure mode this skill exists to break.
253
+
254
+ ## Rules
255
+
256
+ - **Name the forbidden options in the generation brief.** Without an explicit "do not return these"
257
+ list, a fresh agent returns your stale options with new names.
258
+ - **Generate with a context-free subagent.** The thread is the anchor you are trying to escape.
259
+ - **Three ideas per group must differ in MECHANISM**, not in phrasing.
260
+ - **Apply the "does it re-require the unworkable thing" filter first** — it is the one most often
261
+ violated, including by designs that feel elegant.
262
+ - **Occupancy before affection.** Search shipped code, not only literature.
263
+ - **Negative results count.** "This group yields nothing here" is a real finding; record it so the
264
+ group is not re-swept.
265
+ - **Prefer designs that work without anything understanding anything** — counting, required fields,
266
+ foreign keys, expiry dates, and grants do not leak. Interpretation does.
267
+ - **Say what each candidate is silent about.** A design that covers a quarter of the population and
268
+ says nothing about the rest is fine — undeclared silence is not.
269
+
270
+ ## Compose with
271
+ - \`research-ideate\` — validates ONE idea's research value; run after this picks a candidate.
272
+ - \`map-prior-work\` / \`analyze-sibling-paper\` — occupancy at the level of a paper's contribution.
273
+ - \`build-benchmark\` — once the mechanism exists, this measures it.
274
+ - \`paper-adversarial-review\` / \`pc-panel-review\` — red-team the survivor.
275
+
276
+ ## Provenance
277
+ Built 2026-07-29 during \`the reference paper\`, after a solution search stalled for hours. Four
278
+ consecutive proposals were the same idea reworded; when finally swept properly, a context-free agent
279
+ produced 24 candidates across 8 groups, of which the three least obvious came from **capabilities**
280
+ (the rule's text exists only as the monitor's refusal message — no prose is stored at all),
281
+ **databases** (\`ADD CONSTRAINT\` refuses when current data already violates), and
282
+ **specification-by-example** (measure the artifact's *effect* and never read it). None of the three
283
+ was reachable from the thread, and two of the thread's own front-runners turned out to be shipped
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+ already. The catalog exists so the next sweep starts from named constructs instead of from memory.`,
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+ });
@@ -0,0 +1,19 @@
1
+ /**
2
+ * sweep-design-space — the PAID tier: does this skill's description actually fire?
3
+ *
4
+ * COLOCATED ON PURPOSE (vigiles decides coverage by placement as of 2026-08-11).
5
+ * The prompts live in `.claude/lib/skill-trigger-cases.mjs` so all 21 cases
6
+ * are reviewed as one table where collisions between siblings are visible;
7
+ * copying them here would recreate the drift that rule exists to prevent.
8
+ *
9
+ * Measures recall (fires on its own territory) AND precision (stays quiet on a
10
+ * colliding sibling's territory), against the REAL `.claude` harness so the skill
11
+ * competes with every other installed description — an isolated run overstates
12
+ * recall and understates false positives.
13
+ *
14
+ * Costs money; not CI.
15
+ * node .claude/skills/sweep-design-space/sweep-design-space.eval.mjs [trials]
16
+ */
17
+ import { runSkillTriggerEval } from "../../lib/skill-eval-kit.mjs";
18
+
19
+ await runSkillTriggerEval("sweep-design-space");
@@ -0,0 +1,23 @@
1
+ /**
2
+ * sweep-design-space — the free, deterministic tier. No model, no network.
3
+ *
4
+ * COLOCATED ON PURPOSE. vigiles decides coverage by PLACEMENT as of 2026-08-11:
5
+ * a test that merely names a surface no longer counts, because that tier was
6
+ * crediting surfaces nothing touched. So each skill needs a file inside its own
7
+ * directory — this one.
8
+ *
9
+ * The assertions live in `.claude/lib/skill-checks.mjs` and are CALLED here with
10
+ * this skill's name. They are not copied: 22 copies of the same checks is the drift that
11
+ * module exists to avoid. (Until 2026-08-11 this was an env-var side channel into a
12
+ * 614-line file named after no surface; it is a function call now.)
13
+ *
14
+ * What this proves: this skill's frontmatter parses as strict YAML, its declared
15
+ * tool contract is sane, its pipeline wiring points at scripts that exist, and it
16
+ * announces/records under ITS OWN identity rather than a sibling's.
17
+ *
18
+ * What it does NOT prove: that the skill fires, or that its guidance produces a
19
+ * good result. Those need a real model — see `sweep-design-space.eval.mjs`.
20
+ */
21
+ import { checkSkill } from "../../lib/skill-checks.mjs";
22
+
23
+ await checkSkill("sweep-design-space");