paperlint 10.4.0 → 11.0.0

package/dist/domain/decide-first.js

@@ -69,6 +69,10 @@ const historyFindings = (s) => {
             return [
                 { problem: "decision-not-file", id: s.id, file, what: s.facts.what },
             ];
+        case "linked":
+            return [
+                { problem: "decision-linked", id: s.id, file, link: s.facts.link },
+            ];
         case "unknown":
             return [{ problem: "no-history", id: s.id, why: s.facts.why }];
         case "shallow":
@@ -85,12 +89,14 @@ const RULE = "repro/outputs-before-decision";
 const NOT_A_FILE = {
     directory: "git answers for a directory with the commits of anything under it",
     "symbolic link": "git records the link, not the file it points to",
+    "special file": "git tracks only regular files",
 };
 const short = (c) => `${c.commit.slice(0, 12)} (${c.date})`;
 const HEADS = {
     "decision-is-output": (f) => `The decision of \`${f.id}\`, \`${f.file}\`, is matched by its output \`${f.glob}\`: the decision would be one of the files its own run produces. What to do: keep the decision out of the outputs — a file the globs do not match, or one elsewhere in the paper — and set \`mode.decision.file\`.`,
     "decision-deleted": (f) => `The decision of \`${f.id}\`, \`${f.file}\`, was committed and then deleted: it is not in HEAD, so the study has no decision its outputs could follow. What to do: restore the decision file as it was decided and commit it — never write a new one after the outputs; if the decision no longer holds, declare the study \`exploratory\` with the reason.`,
     "decision-not-file": (f) => `The decision of \`${f.id}\`, \`${f.file}\`, is a ${f.what}, not a file: ${NOT_A_FILE[f.what]}, so no order can be read from it. What to do: name the decision file itself in \`mode.decision.file\`.`,
+    "decision-linked": (f) => `The decision of \`${f.id}\`, \`${f.file}\`, passes through the symbolic link \`${f.link}\`: git records the link, not the files behind it, so no order can be read from it. What to do: name a decision file that lies in real directories in \`mode.decision.file\`.`,
     "no-history": (f) => `\`${f.id}\` is decided before its run, and git's history is the proof of that order, but git could not answer: ${f.why}. What to do: lint the paper inside its git repository, with git installed.`,
     shallow: (f) => `\`${f.id}\` is decided before its run, and this clone is shallow: every file's first commit is the clone's first, so the order of decision and outputs cannot be read. What to do: fetch the whole history (\`git fetch --unshallow\`; in GitHub Actions, \`actions/checkout\` with \`fetch-depth: 0\`).`,
     "undecided-output": (f) => `\`repro/${f.folder}/${f.path}\` is an output of \`${f.id}\` — in the tree, or in its history — and the study is decided before its run, but its decision \`${f.decision}\` was never committed. What to do: write and commit the decision, check it with \`npx paperlint studies gate <paper-dir> ${f.id}\`, then run the study again; if the output was made before any decision, declare the study \`exploratory\` with the reason. Deleting the output does not undo it: history keeps it.`,

package/dist/domain/decide-first.js.map

@@ -1 +1 @@
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package/dist/domain/index-columns.d.ts.map

@@ -1 +1 @@
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package/dist/domain/index-columns.js

@@ -42,6 +42,8 @@ export const indexHistory = (s) => {
     switch (s.facts.kind) {
         case "not-a-file":
             return { kind: "unread", why: `the decision is a ${s.facts.what}` };
+        case "linked":
+            return { kind: "unread", why: "the decision is behind a symbolic link" };
         case "unknown":
             return { kind: "unread", why: "git could not answer" };
         case "shallow":

package/dist/domain/index-columns.js.map

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package/dist/domain/portal-token.d.ts

@@ -0,0 +1,44 @@
+/**
+ * WHICH TOKEN A PORTAL COMMAND USES — the policy, in one place. Pure.
+ *
+ * The site's own variable, and nothing else: there is NO fallback to a site-less variable. With one,
+ * which token a command used is not visible, and a token from another site reads as "the portal
+ * refused". A site-less variable that is set while the site's own is not is refused by name. The
+ * names themselves are the portal's (`src/adapters/hotcrp/token.ts`).
+ */
+import { type Result } from "./result.ts";
+/**
+ * The site's host as written in its URL, with its port when it is not the scheme's default
+ * (`review.example.org:8443`): two sites on one host differ by port. The URL itself when it does
+ * not parse.
+ */
+export declare const hostOf: (url: string) => string;
+/** The variables a lookup reads: the site's own, and the site-less one it refuses. */
+export interface TokenNames {
+    readonly variable: string;
+    readonly siteLess: string;
+}
+/** A token found, and the variable it came from. */
+export interface FoundToken {
+    readonly variable: string;
+    readonly token: string;
+}
+/** Why there is no token to use. */
+export type TokenProblem = 
+/** The site's variable is not set (or blank), and neither is the site-less one. */
+{
+    readonly kind: "missing";
+    readonly variable: string;
+}
+/** The site's variable is not set, but the site-less one, no longer read, is. */
+ | {
+    readonly kind: "site-less";
+    readonly variable: string;
+    readonly siteLess: string;
+};
+/**
+ * The token for a portal, read through `read` (the root reads the environment): the site's variable
+ * only. A set site-less variable never stands in for it — it is named as the problem instead.
+ */
+export declare function lookUpToken({ variable, siteLess }: TokenNames, read: (name: string) => string | undefined): Result<FoundToken, TokenProblem>;
+//# sourceMappingURL=portal-token.d.ts.map

package/dist/domain/portal-token.d.ts.map

@@ -0,0 +1 @@
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package/dist/domain/portal-token.js

@@ -0,0 +1,32 @@
+/**
+ * WHICH TOKEN A PORTAL COMMAND USES — the policy, in one place. Pure.
+ *
+ * The site's own variable, and nothing else: there is NO fallback to a site-less variable. With one,
+ * which token a command used is not visible, and a token from another site reads as "the portal
+ * refused". A site-less variable that is set while the site's own is not is refused by name. The
+ * names themselves are the portal's (`src/adapters/hotcrp/token.ts`).
+ */
+import { err, ok } from "./result.js";
+/**
+ * The site's host as written in its URL, with its port when it is not the scheme's default
+ * (`review.example.org:8443`): two sites on one host differ by port. The URL itself when it does
+ * not parse.
+ */
+export const hostOf = (url) => URL.canParse(url) ? new URL(url).host : url;
+const value = (read, name) => {
+    const v = read(name)?.trim();
+    return v === undefined || v === "" ? null : v;
+};
+/**
+ * The token for a portal, read through `read` (the root reads the environment): the site's variable
+ * only. A set site-less variable never stands in for it — it is named as the problem instead.
+ */
+export function lookUpToken({ variable, siteLess }, read) {
+    const token = value(read, variable);
+    if (token !== null)
+        return ok({ variable, token });
+    return value(read, siteLess) === null
+        ? err({ kind: "missing", variable })
+        : err({ kind: "site-less", variable, siteLess });
+}
+//# sourceMappingURL=portal-token.js.map

package/dist/domain/portal-token.js.map

@@ -0,0 +1 @@
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package/dist/domain/study-registry.d.ts

@@ -162,9 +162,27 @@ export type ParsedPlan = {
     readonly kind: "unreadable";
     readonly why: string;
 };
+/**
+ * What a path inside a study's folder is, found without reading it or following a link: a regular
+ * file, nothing, or a path that passes through a symbolic link (`link`: the first one, relative to
+ * the folder).
+ */
+export type Located = {
+    readonly kind: "file";
+} | {
+    readonly kind: "absent";
+} | {
+    readonly kind: "linked";
+    readonly link: string;
+};
 /** What a study's folder holds of the plan its row names: absent, or what its text parsed to. */
 export type PlanState = {
     readonly kind: "absent";
+}
+/** The plan's path passes through a symbolic link, `link` (relative to the folder); never read. */
+ | {
+    readonly kind: "linked";
+    readonly link: string;
 } | ParsedPlan;
 /** The decision file `paperlint studies new` names for a study in `folder`, relative to the paper. */
 export declare const decisionPath: (folder: string) => string;
@@ -204,8 +222,8 @@ export interface StudyInput {
     readonly registry: RegistryState;
     /** `repro/README.md`'s text; null when there is none. */
     readonly readme: string | null;
-    /** Each `<folder>/<result_file>` of the registry that is a file. */
-    readonly existingResults: ReadonlySet<string>;
+    /** What each `<folder>/<result_file>` of the registry is, as `locate` found it; one not listed is absent. */
+    readonly results: ReadonlyMap<string, Located>;
     /** The plan each row names, by `<folder>/<plan>`; one not listed is absent. */
     readonly plans: ReadonlyMap<string, PlanState>;
 }
@@ -252,6 +270,12 @@ export type StudyFinding = {
     readonly id: string;
     readonly path: string;
     readonly why: "missing" | "outside";
+} | {
+    readonly problem: "result-file";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "linked";
+    readonly link: string;
 } | {
     readonly problem: "no-successor";
     readonly id: string;
@@ -286,6 +310,12 @@ export type StudyFinding = {
     readonly id: string;
     readonly path: string;
     readonly why: "missing" | "outside";
+} | {
+    readonly problem: "bad-plan";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "linked";
+    readonly link: string;
 } | {
     readonly problem: "bad-plan";
     readonly id: string;
@@ -337,17 +367,44 @@ export declare const isInside: (path: string) => boolean;
  * naming `../x` would have them read and write outside the paper.
  */
 export declare const isFolderName: (folder: string) => boolean;
+/**
+ * The rows of a registry that carry an id: exactly one, none, or several. The one way to address a
+ * study by its id — a caller that wants "the study P1-S01" gets a row only when there is exactly one,
+ * so no command can act on the first of two rows by accident. A registry may still hold two rows of
+ * one id (`repro/study-registered` reports it); this says so instead of choosing.
+ */
+export type StudyLookup = {
+    readonly kind: "one";
+    readonly row: Study;
+} | {
+    readonly kind: "none";
+} | {
+    readonly kind: "ambiguous";
+    readonly rows: readonly Study[];
+};
+/** The rows of a registry that was read; none when there is no registry, or it does not parse. */
+export declare const studiesOf: (state: RegistryState) => readonly Study[];
+/** The rows of `studies` whose id is `id`, as a `StudyLookup`. */
+export declare const studyById: (studies: readonly Study[], id: string) => StudyLookup;
+/**
+ * The key a path inside a study's folder is held under: `<folder>/<path>`. A plan (`StudyInput.plans`,
+ * `IndexInput.plans`), the history of its study (`IndexInput.history`) and a result file
+ * (`StudyInput.results`) are all found by it.
+ */
+export declare const folderKey: (folder: string, path: string) => string;
 /**
  * The `<folder>/<plan>` of each row whose plan lies inside its folder: the files the judge needs read
  * (`StudyInput.plans`). A plan outside its folder is reported without being read.
  */
 export declare const planKeys: (r: StudyRegistry) => readonly string[];
-/** Each plan `planKeys` names, with the kind of the study whose row names it: what its parser needs. */
-export declare const planRefs: (r: StudyRegistry) => readonly {
-    readonly key: string;
+/** A plan a row names: where it is read from, and the kind of the study — what its parser needs. */
+export interface PlanRef {
     readonly folder: string;
+    readonly plan: string;
     readonly kind: StudyKind;
-}[];
+}
+/** Each plan `planKeys` names. */
+export declare const planRefs: (r: StudyRegistry) => readonly PlanRef[];
 /**
  * Every defect of a paper's study registry, in a fixed order: the registry itself; the unregistered
  * folders; each row's; the index. Pure.
@@ -355,8 +412,8 @@ export declare const planRefs: (r: StudyRegistry) => readonly {
 export declare function judgeStudies(input: StudyInput): readonly StudyFinding[];
 /**
  * What the index is generated from beyond the registry: the plans by `<folder>/<plan>` (as
- * `StudyInput.plans`), and the history of each decide-first study by id. A study with no history
- * listed shows `not read` — the lint, which never compares those columns, asks none.
+ * `StudyInput.plans`), and the history of each decide-first study by the same key. A study with no
+ * history listed shows `not read` — the lint, which never compares those columns, asks none.
  */
 export interface IndexInput {
     readonly plans: ReadonlyMap<string, PlanState>;

package/dist/domain/study-registry.d.ts.map

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package/dist/domain/study-registry.js

@@ -159,14 +159,37 @@ export const isInside = (path) => {
  * naming `../x` would have them read and write outside the paper.
  */
 export const isFolderName = (folder) => folder !== "." && folder !== ".." && /^[^/\\\0]+$/u.test(folder);
+/** The rows of a registry that was read; none when there is no registry, or it does not parse. */
+export const studiesOf = (state) => state.kind === "read" ? state.registry.studies : [];
+/** The rows of `studies` whose id is `id`, as a `StudyLookup`. */
+export const studyById = (studies, id) => {
+    const [first, ...rest] = studies.filter((s) => s.id === id);
+    if (first === undefined)
+        return { kind: "none" };
+    return rest.length === 0
+        ? { kind: "one", row: first }
+        : { kind: "ambiguous", rows: [first, ...rest] };
+};
+/**
+ * The key a path inside a study's folder is held under: `<folder>/<path>`. A plan (`StudyInput.plans`,
+ * `IndexInput.plans`), the history of its study (`IndexInput.history`) and a result file
+ * (`StudyInput.results`) are all found by it.
+ */
+export const folderKey = (folder, path) => `${folder}/${path}`;
 /**
  * The `<folder>/<plan>` of each row whose plan lies inside its folder: the files the judge needs read
  * (`StudyInput.plans`). A plan outside its folder is reported without being read.
  */
-export const planKeys = (r) => planRefs(r).map((p) => p.key);
-/** Each plan `planKeys` names, with the kind of the study whose row names it: what its parser needs. */
+export const planKeys = (r) => planRefs(r).map((p) => folderKey(p.folder, p.plan));
+/** Each plan `planKeys` names. */
 export const planRefs = (r) => r.studies.flatMap((s) => s.plan !== undefined && isInside(s.plan) && isFolderName(s.folder)
-    ? [{ key: `${s.folder}/${s.plan}`, folder: s.folder, kind: s.kind }]
+    ? [
+        {
+            folder: s.folder,
+            plan: s.plan,
+            kind: s.kind,
+        },
+    ]
     : []);
 /** Whether the row is the first of the registry with its value of `key`. */
 const isFirst = ({ r, s, i }, key) => r.studies.findIndex((o) => key(o) === key(s)) === i;
@@ -174,7 +197,7 @@ const badId = ({ r, s }) => idNumber(r.prefix, s.id) === null
     ? { problem: "bad-id", id: s.id, prefix: r.prefix }
     : null;
 /** Reported once, on the first row that holds the id. */
-const duplicateId = (row) => row.r.studies.filter((o) => o.id === row.s.id).length > 1 &&
+const duplicateId = (row) => studyById(row.r.studies, row.s.id).kind === "ambiguous" &&
     isFirst(row, (o) => o.id)
     ? { problem: "duplicate-id", id: row.s.id }
     : null;
@@ -217,9 +240,23 @@ const resultFile = ({ s, input }) => {
         return null;
     if (!isInside(path))
         return { problem: "result-file", id: s.id, path, why: "outside" };
-    return input.existingResults.has(`${s.folder}/${path}`)
-        ? null
-        : { problem: "result-file", id: s.id, path, why: "missing" };
+    const found = input.results.get(folderKey(s.folder, path)) ?? {
+        kind: "absent",
+    };
+    switch (found.kind) {
+        case "file":
+            return null;
+        case "linked":
+            return {
+                problem: "result-file",
+                id: s.id,
+                path,
+                why: "linked",
+                link: found.link,
+            };
+        case "absent":
+            return { problem: "result-file", id: s.id, path, why: "missing" };
+    }
 };
 const noSuccessor = ({ r, s }) => {
     const by = s.superseded_by ?? null;
@@ -234,14 +271,12 @@ const unknownMeasurement = ({ r, s }) => r.measurements === undefined ||
     r.measurements.some((m) => m.id === s.measurement)
     ? null
     : { problem: "unknown-measurement", id: s.id, measurement: s.measurement };
-/** The state of the plan the row names (absent when outside its folder); null when it names none. */
-const planOf = ({ s, input }) => {
-    if (s.plan === undefined)
-        return null;
-    return isInside(s.plan)
-        ? (input.plans.get(`${s.folder}/${s.plan}`) ?? { kind: "absent" })
-        : { kind: "absent" };
-};
+/** The state of the plan `plan` of the row `s` (absent when outside its folder): the one place a plan is looked up. */
+const planStateOf = (input, s, plan) => isInside(plan)
+    ? (input.plans.get(folderKey(s.folder, plan)) ?? { kind: "absent" })
+    : { kind: "absent" };
+/** The state of the plan the row names; null when it names none. */
+const planOf = ({ s, input }) => s.plan === undefined ? null : planStateOf(input, s, s.plan);
 const hasRun = (s) => RAN_STATUSES.includes(s.status);
 /** The finding for the plan `path` of `s`, in the state its folder holds it; null when it stands. */
 const planFinding = (s, path, state) => {
@@ -249,6 +284,8 @@ const planFinding = (s, path, state) => {
     switch (state.kind) {
         case "absent":
             return { ...at, why: "missing" };
+        case "linked":
+            return { ...at, why: "linked", link: state.link };
         case "unreadable":
             return { ...at, why: "unreadable", reasons: state.why };
         case "draft":
@@ -266,7 +303,7 @@ const badPlan = ({ s, input }) => {
         return null;
     if (!isInside(path))
         return { problem: "bad-plan", id: s.id, path, why: "outside" };
-    return planFinding(s, path, input.plans.get(`${s.folder}/${path}`) ?? { kind: "absent" });
+    return planFinding(s, path, planStateOf(input, s, path));
 };
 /** A plan under its old name: read, and named for renaming. */
 const legacyPlan = ({ s }) => s.plan !== undefined && posix.basename(s.plan) === LEGACY_PLAN_FILE
@@ -406,10 +443,11 @@ const cell = (s) => s.replace(/\r?\n/gu, " ").replace(/\\/gu, "\\\\").replace(/\
 /** The mode the plan of `s` declares; null when it names none, or the plan is absent or unreadable. */
 const declaredMode = (s, plans) => {
     const state = s.plan !== undefined && isInside(s.plan)
-        ? plans.get(`${s.folder}/${s.plan}`)
+        ? plans.get(folderKey(s.folder, s.plan))
         : undefined;
     return state === undefined ||
         state.kind === "absent" ||
+        state.kind === "linked" ||
         state.kind === "unreadable"
         ? null
         : (state.plan.mode ?? null);
@@ -417,7 +455,9 @@ const declaredMode = (s, plans) => {
 /** What the index shows of `s` beyond its row. */
 const factsOf = (s, at) => ({
     mode: declaredMode(s, at.plans),
-    history: at.history.get(s.id) ?? null,
+    history: (s.plan === undefined
+        ? undefined
+        : at.history.get(folderKey(s.folder, s.plan))) ?? null,
 });
 /**
  * The columns of the index: each one's header, its cell for a study, and whether git's history is
@@ -558,7 +598,9 @@ const HEADS = {
     "folder-name": (f) => `${REGISTRY}: the row ${tick(f.id)} names the folder ${tick(f.folder)}, which is not \`${f.id}-<slug>\` — the id, then lowercase letters and digits in words joined by hyphens. What to do: rename the folder and the row's \`folder\` together.`,
     "long-title": (f) => `${REGISTRY}: the title of ${tick(f.id)} has ${String(f.words)} words; a title is a plain name of at most ${String(MAX_TITLE_WORDS)}. What to do: shorten it, and put the detail in \`question\`.`,
     "no-result": (f) => `${REGISTRY}: ${tick(f.id)} is \`done\` without ${f.missing.map(tick).join(" and ")}. What to do: write the one-line result and the file it is read from (\`result\`, \`result_file\`), or set the status it really has.`,
-    "result-file": (f) => `${REGISTRY}: the \`result_file\` of ${tick(f.id)}, ${tick(f.path)}, ${f.why === "missing" ? "is not a file in its folder" : "is outside its folder"}. What to do: name a file that exists, relative to the study's folder.`,
+    "result-file": (f) => f.why === "linked"
+        ? `${REGISTRY}: the \`result_file\` of ${tick(f.id)}, ${tick(f.path)}, passes through the symbolic link ${tick(f.link)} in its folder; nothing is read through a link. What to do: name a regular file inside the study's folder, or replace the link with the file itself.`
+        : `${REGISTRY}: the \`result_file\` of ${tick(f.id)}, ${tick(f.path)}, ${f.why === "missing" ? "is not a file in its folder" : "is outside its folder"}. What to do: name a file that exists, relative to the study's folder.`,
     "no-successor": (f) => `${REGISTRY}: ${tick(f.id)} is \`superseded\` ${f.superseded_by === null ? "without `superseded_by`" : `by ${tick(f.superseded_by)}, which is no study in the registry`}. What to do: name the id of the study that replaced it.`,
     "stale-index": (f) => `${STALE_HEAD[f.why]} ${RUN_INDEX}`,
     "unknown-measurement": (f) => `${REGISTRY}: the row ${tick(f.id)} names the measurement ${tick(f.measurement)}, which is not in \`measurements\`. What to do: add the measurement to \`measurements\`, or correct the row's \`measurement\`.`,
@@ -573,6 +615,8 @@ const HEADS = {
         switch (f.why) {
             case "missing":
                 return `${REGISTRY}: ${of} is not a file in its folder. What to do: write the plan there (its fields are on the rule's page), or correct the row's \`plan\`.`;
+            case "linked":
+                return `${REGISTRY}: ${of} passes through the symbolic link ${tick(f.link)} in its folder; nothing is read through a link. What to do: replace the link with the plan file itself.`;
             case "outside":
                 return `${REGISTRY}: ${of} is outside its folder. What to do: keep the plan in the study's folder, as \`${PLAN_FILE}\`, and name it relative to the folder.`;
             case "unreadable":