paperlint 10.3.0 → 10.4.0

package/.github/workflows/ci.yml

@@ -28,9 +28,12 @@
 # what took the job from `timeout-minutes: 20` to 10. Re-measure when the counts move again; do not
 # cite the table above without re-running it.
 #
-# Expect ~3 minutes warm. `timeout-minutes: 10` is ~3×, and `npm ci` carries its OWN bond
-# because a job-level bond cannot tell "the registry hung" from "the suite is slow" and so hands
-# a hang the whole job.
+# MEASURED 2026-10-16 on GitHub's runner, not locally: `gates` on main took 9m38s (run 38854596880),
+# 6m43s of it `npm test, under coverage`; a branch adding a 16-second step was cancelled by the
+# 10-minute bond (run 38909690302). The ~3-minute estimate this bond was set against no longer holds,
+# so `timeout-minutes: 15` is ~1.5× the measured job — a bond against a hang, not a budget the suite
+# lives inside. `npm ci` carries its OWN bond because a job-level bond cannot tell "the registry hung"
+# from "the suite is slow" and so hands a hang the whole job.
 name: ci
 
 on:
@@ -66,7 +69,7 @@ jobs:
     # there is no pull_request object, and a bare `.draft` would be missing and kill every check there.
     if: github.event_name != 'pull_request' || github.event.pull_request.draft == false
     runs-on: ubuntu-latest
-    timeout-minutes: 10
+    timeout-minutes: 15
     steps:
       - uses: actions/checkout@v7
 
@@ -188,6 +191,14 @@ jobs:
         run: npm run test:e2e:install
         timeout-minutes: 10
 
+      # A study decided before its run, through the real binary in a real git repository
+      # (test/e2e/studies/): `studies gate`, `repro/outputs-before-decision`, and the commits
+      # `studies index` writes. git is on the runner image; `CI` is set, so a missing git FAILS the
+      # run (test/e2e/need.ts). 16 s on the runner (run 38909690302), 10 s locally.
+      - name: npm run test:e2e:studies
+        run: npm run test:e2e:studies
+        timeout-minutes: 5
+
   # ── BUILDING THE PAPER WITH REAL pdflatex, ON LINUX AND macOS ──────────────────────────────────
   #
   # 🔴 ONE JOB, TWO OPERATING SYSTEMS. TeX Live comes from `paperlint toolchain` — the same command a user

package/README.md

@@ -162,6 +162,7 @@ Each stage's skills, what it writes and what checks it, drawn as one flow, with
 | `npx paperlint submission update <paper>`                   | checks a new PDF/abstract against the portal; `--save` sends it for real       |
 | `npx paperlint studies new <paper> "<title>"`               | registers a study: the next id in `repro/studies.json`, its folder, the index  |
 | `npx paperlint studies index <paper>`                       | regenerates the index of the studies in `repro/README.md`                      |
+| `npx paperlint studies gate <paper> <id>`                   | exits 0 only once the study's decision is committed: run it before the study   |
 | `npx paperlint --help`                                      | every command and flag                                                         |
 
 ## 🧠 Skills

package/dist/adapters/git/index.d.ts

@@ -0,0 +1,10 @@
+import type { CommitAt, GitHistory, GitOrder } from "../../ports/git-history.ts";
+import type { RunProcess } from "../../ports/process.ts";
+/**
+ * The first commit of each path in `git log --reverse --format=%x01%H%x09%cI --name-only` output:
+ * a line starting with \x01 opens a commit, the lines after it name its files.
+ */
+export declare const firstCommitsOf: (log: string) => ReadonlyMap<string, CommitAt>;
+/** The committed state of files. */
+export declare function gitHistory(run: RunProcess, env: Readonly<Record<string, string>>): GitHistory & GitOrder;
+//# sourceMappingURL=index.d.ts.map

package/dist/adapters/git/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/adapters/git/index.js

@@ -0,0 +1,151 @@
+const TIMEOUT_MS = 60_000;
+/** git's stdout, or why it gave none; `allowed` lists the exit statuses that are answers. */
+const stdoutOf = (x, allowed = [0]) => {
+    switch (x.kind) {
+        case "exited":
+            return allowed.includes(x.status)
+                ? { out: x.stdout, status: x.status }
+                : { why: x.stderr.trim() || `git exited ${String(x.status)}` };
+        case "not-found":
+            return { why: "git is not installed" };
+        case "spawn-failed":
+            return { why: x.message };
+        case "signalled":
+        case "timed-out":
+            return { why: `git did not finish (${x.kind})` };
+    }
+};
+/** git, run through `run` in `cwd` with `env` as its whole environment. */
+const gitIn = (run, env) => (cwd, args, allowed) => stdoutOf(run.run({
+    file: "git",
+    args: ["-c", "core.quotepath=false", ...args],
+    env,
+    timeoutMs: TIMEOUT_MS,
+    cwd,
+    maxOutputBytes: 64 * 1024 * 1024,
+}), allowed);
+/** `<sha>\t<date>` as a commit. */
+const commitAt = (line) => {
+    const parts = line.split("\t");
+    return { commit: nth(parts, 0), date: nth(parts, 1) };
+};
+/** The `i`th of `parts`, "" when there are fewer. */
+const nth = (parts, i) => parts.slice(i, i + 1).join("");
+/**
+ * The first commit of each path in `git log --reverse --format=%x01%H%x09%cI --name-only` output:
+ * a line starting with \x01 opens a commit, the lines after it name its files.
+ */
+export const firstCommitsOf = (log) => log
+    .split("\x01")
+    .slice(1)
+    .reduce((seen, block) => {
+    const lines = block.split("\n");
+    const at = commitAt(nth(lines, 0));
+    const names = lines.slice(1);
+    return names
+        .filter((n) => n !== "" && !seen.has(n))
+        .reduce((m, n) => new Map([...m, [n, at]]), seen);
+}, new Map());
+/** The committed state of files. */
+export function gitHistory(run, env) {
+    const git = gitIn(run, env);
+    return {
+        committed: (paper, file) => {
+            const log = git(paper, ["log", "-1", "--format=%H%x09%cI", "--", file]);
+            if ("why" in log)
+                return { kind: "unknown", why: log.why };
+            const { commit, date } = commitAt(log.out.trim());
+            if (commit === "")
+                return { kind: "not-committed" };
+            // `git log -1` names a deleting commit too, and a deleted file leaves a clean status.
+            const head = inHead(git, paper, file);
+            if ("why" in head)
+                return { kind: "unknown", why: head.why };
+            if (!head.present)
+                return { kind: "deleted", commit };
+            const status = git(paper, ["status", "--porcelain=v1", "--", file]);
+            if ("why" in status)
+                return { kind: "unknown", why: status.why };
+            return status.out.trim() === ""
+                ? { kind: "committed", commit, date }
+                : { kind: "changed", commit };
+        },
+        order: (studyDir, decision) => orderIn(git, studyDir, decision),
+    };
+}
+/** Whether `file` is in HEAD's tree (`git ls-tree`, which takes an absolute path in the worktree). */
+const inHead = (git, cwd, file) => {
+    const t = git(cwd, ["ls-tree", "--name-only", "HEAD", "--", file]);
+    return "why" in t ? t : { present: t.out.trim() !== "" };
+};
+/** The decision's first commit (null: never committed), and whether HEAD's tree still holds it. */
+const decisionIn = (git, studyDir, decision) => {
+    const d = git(studyDir, ["log", "--format=%H%x09%cI", "--", decision]);
+    if ("why" in d)
+        return d;
+    const lines = d.out.trim().split("\n");
+    const first = commitAt(nth(lines, lines.length - 1));
+    if (first.commit === "")
+        return { at: null, deleted: false };
+    const head = inHead(git, studyDir, decision);
+    return "why" in head ? head : { at: first, deleted: !head.present };
+};
+/** The order facts of the study in `studyDir`, decided by `decision`. */
+function orderIn(git, studyDir, decision) {
+    const shallow = git(studyDir, ["rev-parse", "--is-shallow-repository"]);
+    if ("why" in shallow)
+        return { kind: "unknown", why: shallow.why };
+    if (shallow.out.trim() === "true")
+        return { kind: "shallow" };
+    const d = decisionIn(git, studyDir, decision);
+    if ("why" in d)
+        return { kind: "unknown", why: d.why };
+    const files = git(studyDir, [
+        "log",
+        "--reverse",
+        "--format=%x01%H%x09%cI",
+        "--name-only",
+        "--relative",
+        "--",
+        ".",
+    ]);
+    if ("why" in files)
+        return { kind: "unknown", why: files.why };
+    const ordered = ordersOf(git, studyDir, d.at, firstCommitsOf(files.out));
+    return "why" in ordered
+        ? { kind: "unknown", why: ordered.why }
+        : {
+            kind: "read",
+            decision: d.at,
+            decisionDeleted: d.deleted,
+            files: ordered.files,
+        };
+}
+const isFailed = (a) => "why" in a;
+const isOrdered = (a) => "order" in a;
+/** The order of `commit` against `decision`'s first commit. */
+const answerFor = (git, cwd, decision, commit) => {
+    if (decision === null)
+        return { commit, order: "not-after" };
+    if (commit === decision.commit)
+        return { commit, order: "same" };
+    const a = git(cwd, ["merge-base", "--is-ancestor", decision.commit, commit], [0, 1]);
+    if ("why" in a)
+        return { commit, why: a.why };
+    return { commit, order: a.status === 0 ? "after" : "not-after" };
+};
+/** Each file's first commit with its order against `decision`'s; git asked once per distinct commit. */
+function ordersOf(git, cwd, decision, firsts) {
+    const answers = [...new Set([...firsts.values()].map((c) => c.commit))].map((c) => answerFor(git, cwd, decision, c));
+    const failed = answers.find(isFailed);
+    if (failed !== undefined)
+        return { why: failed.why };
+    return {
+        files: answers
+            .filter(isOrdered)
+            .flatMap(({ commit, order }) => [...firsts]
+            .filter(([, c]) => c.commit === commit)
+            .map(([path, c]) => ({ path, ...c, order }))),
+    };
+}
+//# sourceMappingURL=index.js.map

package/dist/adapters/git/index.js.map

@@ -0,0 +1 @@
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package/dist/adapters/memory/index.d.ts

@@ -1,6 +1,7 @@
 import type { Download } from "../../ports/download.ts";
 import type { Files } from "../../ports/files.ts";
 import type { ListDir } from "../../ports/talk-media.ts";
+import type { ListEntries } from "../../ports/list-entries.ts";
 import type { Command, ProcessExit, RunProcess } from "../../ports/process.ts";
 import type { Workspace } from "../../ports/workspace.ts";
 export interface ScriptedProcess extends RunProcess {
@@ -16,6 +17,11 @@ export interface MemoryFiles extends Files {
 export declare function memoryFiles(initial?: Readonly<Record<string, string | Uint8Array>>): MemoryFiles;
 /** `ListDir` over `memoryFiles`: the names directly under a directory, none when it holds no file. */
 export declare const memoryListDir: (files: MemoryFiles) => ListDir;
+/**
+ * `ListEntries` over `memoryFiles`: each name directly under a directory, a file when it is one, else a
+ * directory. Memory holds no links: the walk's refusal to follow one is the node adapter's to show.
+ */
+export declare const memoryListEntries: (files: MemoryFiles) => ListEntries;
 export interface MemoryWorkspace extends Workspace {
     /** Every file written into a scratch directory, in order. */
     readonly written: {

package/dist/adapters/memory/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/adapters/memory/index.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACxD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,2BAA2B,CAAC;AACzD,OAAO,KAAK,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AAC/E,OAAO,KAAK,EAAwB,SAAS,EAAE,MAAM,0BAA0B,CAAC;AAGhF,MAAM,WAAW,eAAgB,SAAQ,UAAU;IACjD,QAAQ,CAAC,KAAK,EAAE,OAAO,EAAE,CAAC;CAC3B;AAED,mFAAmF;AACnF,wBAAgB,eAAe,CAC7B,MAAM,EAAE,CAAC,CAAC,EAAE,OAAO,KAAK,WAAW,GAClC,eAAe,CASjB;AAED,kDAAkD;AAClD,eAAO,MAAM,UAAU,GAAI,QAAQ,MAAM,EAAE,eAAU,KAAG,WAKtD,CAAC;AAEH,MAAM,WAAW,WAAY,SAAQ,KAAK;IACxC,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;CACvC;AAED,wBAAgB,WAAW,CACzB,OAAO,GAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,UAAU,CAAC,CAAM,GAC1D,WAAW,CAYb;AAED,sGAAsG;AACtG,eAAO,MAAM,aAAa,GACvB,OAAO,WAAW,KAAG,OAYrB,CAAC;AAEJ,MAAM,WAAW,eAAgB,SAAQ,SAAS;IAChD,6DAA6D;IAC7D,QAAQ,CAAC,OAAO,EAAE;QAChB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;QACtB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;QACzB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC;KAChC,EAAE,CAAC;IACJ,+BAA+B;IAC/B,QAAQ,CAAC,KAAK,EAAE,CAAC,UAAU,GAAG,OAAO,CAAC,EAAE,CAAC;CAC1C;AAED,wBAAgB,eAAe,CAAC,GAAG,SAAa,GAAG,eAAe,CAyBjE;AAED,MAAM,WAAW,aAAc,SAAQ,QAAQ;IAC7C,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,CAAC;CACzB;AAED,uGAAuG;AACvG,wBAAgB,aAAa,CAC3B,IAAI,EAAE,MAAM,GAAG,UAAU,GAAG;IAAE,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GACtD,aAAa,CAUf;AAED,4FAA4F;AAC5F,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,GAAG,EAAE,UAAU,CAAC;IACzB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,SAAS,EAAE,SAAS,CAAC;IAC9B,QAAQ,CAAC,QAAQ,EAAE,QAAQ,CAAC;CAC7B;AAED,qEAAqE;AACrE,wBAAgB,WAAW,CAAC,IAAI,GAAE,OAAO,CAAC,WAAW,CAAM,GAAG,WAAW,CAQxE"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/adapters/memory/index.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACxD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,2BAA2B,CAAC;AACzD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,6BAA6B,CAAC;AAC/D,OAAO,KAAK,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AAC/E,OAAO,KAAK,EAAwB,SAAS,EAAE,MAAM,0BAA0B,CAAC;AAGhF,MAAM,WAAW,eAAgB,SAAQ,UAAU;IACjD,QAAQ,CAAC,KAAK,EAAE,OAAO,EAAE,CAAC;CAC3B;AAED,mFAAmF;AACnF,wBAAgB,eAAe,CAC7B,MAAM,EAAE,CAAC,CAAC,EAAE,OAAO,KAAK,WAAW,GAClC,eAAe,CASjB;AAED,kDAAkD;AAClD,eAAO,MAAM,UAAU,GAAI,QAAQ,MAAM,EAAE,eAAU,KAAG,WAKtD,CAAC;AAEH,MAAM,WAAW,WAAY,SAAQ,KAAK;IACxC,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;CACvC;AAED,wBAAgB,WAAW,CACzB,OAAO,GAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,UAAU,CAAC,CAAM,GAC1D,WAAW,CAYb;AAED,sGAAsG;AACtG,eAAO,MAAM,aAAa,GACvB,OAAO,WAAW,KAAG,OAYrB,CAAC;AAEJ;;;GAGG;AACH,eAAO,MAAM,iBAAiB,GAC3B,OAAO,WAAW,KAAG,WAKjB,CAAC;AAER,MAAM,WAAW,eAAgB,SAAQ,SAAS;IAChD,6DAA6D;IAC7D,QAAQ,CAAC,OAAO,EAAE;QAChB,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;QACtB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;QACzB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC;KAChC,EAAE,CAAC;IACJ,+BAA+B;IAC/B,QAAQ,CAAC,KAAK,EAAE,CAAC,UAAU,GAAG,OAAO,CAAC,EAAE,CAAC;CAC1C;AAED,wBAAgB,eAAe,CAAC,GAAG,SAAa,GAAG,eAAe,CAyBjE;AAED,MAAM,WAAW,aAAc,SAAQ,QAAQ;IAC7C,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,CAAC;CACzB;AAED,uGAAuG;AACvG,wBAAgB,aAAa,CAC3B,IAAI,EAAE,MAAM,GAAG,UAAU,GAAG;IAAE,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GACtD,aAAa,CAUf;AAED,4FAA4F;AAC5F,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,GAAG,EAAE,UAAU,CAAC;IACzB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,SAAS,EAAE,SAAS,CAAC;IAC9B,QAAQ,CAAC,QAAQ,EAAE,QAAQ,CAAC;CAC7B;AAED,qEAAqE;AACrE,wBAAgB,WAAW,CAAC,IAAI,GAAE,OAAO,CAAC,WAAW,CAAM,GAAG,WAAW,CAQxE"}

package/dist/adapters/memory/index.js

@@ -41,6 +41,14 @@ export const memoryListDir = (files) => (dir) => [
         .split("/", 1)
         .join(""))),
 ];
+/**
+ * `ListEntries` over `memoryFiles`: each name directly under a directory, a file when it is one, else a
+ * directory. Memory holds no links: the walk's refusal to follow one is the node adapter's to show.
+ */
+export const memoryListEntries = (files) => (dir) => memoryListDir(files)(dir).map((name) => ({
+    name,
+    kind: files.isFile(absolutePath(`${dir}/${name}`)) ? "file" : "dir",
+}));
 export function memoryWorkspace(dir = "/scratch") {
     const written = [];
     const ended = [];

package/dist/adapters/memory/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/adapters/memory/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAC;AAOrD,OAAO,EAAE,GAAG,EAAE,EAAE,EAAE,MAAM,wBAAwB,CAAC;AAMjD,mFAAmF;AACnF,MAAM,UAAU,eAAe,CAC7B,MAAmC;IAEnC,MAAM,KAAK,GAAc,EAAE,CAAC;IAC5B,OAAO;QACL,KAAK;QACL,GAAG,CAAC,CAAC;YACH,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YACd,OAAO,MAAM,CAAC,CAAC,CAAC,CAAC;QACnB,CAAC;KACF,CAAC;AACJ,CAAC;AAED,kDAAkD;AAClD,MAAM,CAAC,MAAM,UAAU,GAAG,CAAC,MAAc,EAAE,MAAM,GAAG,CAAC,EAAe,EAAE,CAAC,CAAC;IACtE,IAAI,EAAE,QAAQ;IACd,MAAM;IACN,MAAM;IACN,MAAM,EAAE,EAAE;CACX,CAAC,CAAC;AAMH,MAAM,UAAU,WAAW,CACzB,UAAyD,EAAE;IAE3D,MAAM,KAAK,GAAG,CAAC,CAAsB,EAAE,EAAE,CACvC,OAAO,CAAC,KAAK,QAAQ,CAAC,CAAC,CAAC,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1D,MAAM,GAAG,GAAG,IAAI,GAAG,CACjB,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,CAAU,CAAC,CAChE,CAAC;IACF,OAAO;QACL,GAAG;QACH,MAAM,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;QACzB,SAAS,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,IAAI;QACpC,WAAW,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,KAAK,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;KAC1C,CAAC;AACJ,CAAC;AAED,sGAAsG;AACtG,MAAM,CAAC,MAAM,aAAa,GACxB,CAAC,KAAkB,EAAW,EAAE,CAChC,CAAC,GAAG,EAAE,EAAE,CAAC;IACP,GAAG,IAAI,GAAG,CACR,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC;SACtC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CACT,CAAC;SACE,KAAK,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC;SACrB,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC;SACb,IAAI,CAAC,EAAE,CAAC,CACZ,CACJ;CACF,CAAC;AAEJ;;;GAGG;AACH,MAAM,CAAC,MAAM,iBAAiB,GAC5B,CAAC,KAAkB,EAAe,EAAE,CACpC,CAAC,GAAG,EAAE,EAAE,CACN,aAAa,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IACvC,IAAI;IACJ,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,YAAY,CAAC,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK;CACpE,CAAC,CAAC,CAAC;AAaR,MAAM,UAAU,eAAe,CAAC,GAAG,GAAG,UAAU;IAC9C,MAAM,OAAO,GAA+B,EAAE,CAAC;IAC/C,MAAM,KAAK,GAA6B,EAAE,CAAC;IAC3C,MAAM,EAAE,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC;IAC7B,MAAM,OAAO,GAAY;QACvB,GAAG,EAAE,EAAE;QACP,KAAK,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI;YACvB,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC;YACtC,OAAO,YAAY,CAAC,GAAG,GAAG,IAAI,IAAI,EAAE,CAAC,CAAC;QACxC,CAAC;KACF,CAAC;IACF,OAAO;QACL,OAAO;QACP,KAAK;QACL,MAAM,CAAI,OAAe,EAAE,GAAmC;YAC5D,IAAI,CAAC;gBACH,MAAM,CAAC,GAAG,GAAG,CAAC,OAAO,CAAC,CAAC;gBACvB,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;gBACvB,OAAO,CAAC,CAAC;YACX,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;gBACpB,MAAM,CAAC,CAAC;YACV,CAAC;QACH,CAAC;KACF,CAAC;AACJ,CAAC;AAMD,uGAAuG;AACvG,MAAM,UAAU,aAAa,CAC3B,IAAuD;IAEvD,MAAM,IAAI,GAAa,EAAE,CAAC;IAC1B,OAAO;QACL,IAAI;QACJ,KAAK,CAAC,GAAG;YACP,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACf,IAAI,OAAO,IAAI,KAAK,QAAQ;gBAAE,OAAO,EAAE,CAAC,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC;YACxE,OAAO,IAAI,YAAY,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAC3D,CAAC;KACF,CAAC;AACJ,CAAC;AAUD,qEAAqE;AACrE,MAAM,UAAU,WAAW,CAAC,OAA6B,EAAE;IACzD,OAAO;QACL,GAAG,EAAE,eAAe,CAAC,GAAG,EAAE,CAAC,UAAU,CAAC,EAAE,CAAC,CAAC;QAC1C,KAAK,EAAE,WAAW,EAAE;QACpB,SAAS,EAAE,eAAe,EAAE;QAC5B,QAAQ,EAAE,aAAa,CAAC,EAAE,MAAM,EAAE,sBAAsB,EAAE,CAAC;QAC3D,GAAG,IAAI;KACR,CAAC;AACJ,CAAC"}

package/dist/adapters/node/index.d.ts

@@ -23,4 +23,5 @@ export { nodeFiles } from "./files.io.ts";
 export { spawnProcess, type SpawnSync } from "./process.io.ts";
 export { hostDirs } from "./host.io.ts";
 export { nodeListDir } from "./list-dir.io.ts";
+export { nodeListEntries } from "./list-entries.io.ts";
 //# sourceMappingURL=index.d.ts.map

package/dist/adapters/node/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/adapters/node/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAgB,KAAK,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAG/D,MAAM,WAAW,kBAAkB;IACjC,mCAAmC;IACnC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,gDAAgD;IAChD,QAAQ,CAAC,KAAK,CAAC,EAAE,SAAS,CAAC;CAC5B;AAED,8CAA8C;AAC9C,MAAM,WAAW,SAAS;IACxB,QAAQ,CAAC,GAAG,EAAE,UAAU,CAAC;IACzB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,SAAS,EAAE,SAAS,CAAC;CAC/B;AAED,wBAAgB,YAAY,CAAC,CAAC,EAAE,kBAAkB,GAAG,SAAS,CAM7D;AAED,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAC1C,OAAO,EAAE,YAAY,EAAE,KAAK,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC/D,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/adapters/node/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAgB,KAAK,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAG/D,MAAM,WAAW,kBAAkB;IACjC,mCAAmC;IACnC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,gDAAgD;IAChD,QAAQ,CAAC,KAAK,CAAC,EAAE,SAAS,CAAC;CAC5B;AAED,8CAA8C;AAC9C,MAAM,WAAW,SAAS;IACxB,QAAQ,CAAC,GAAG,EAAE,UAAU,CAAC;IACzB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,SAAS,EAAE,SAAS,CAAC;CAC/B;AAED,wBAAgB,YAAY,CAAC,CAAC,EAAE,kBAAkB,GAAG,SAAS,CAM7D;AAED,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAC1C,OAAO,EAAE,YAAY,EAAE,KAAK,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC/D,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC"}

package/dist/adapters/node/index.js

@@ -12,4 +12,5 @@ export { nodeFiles } from "./files.io.js";
 export { spawnProcess } from "./process.io.js";
 export { hostDirs } from "./host.io.js";
 export { nodeListDir } from "./list-dir.io.js";
+export { nodeListEntries } from "./list-entries.io.js";
 //# sourceMappingURL=index.js.map

package/dist/adapters/node/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/adapters/node/index.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAC1C,OAAO,EAAE,YAAY,EAAkB,MAAM,iBAAiB,CAAC;AAC/D,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAgBjD,MAAM,UAAU,YAAY,CAAC,CAAqB;IAChD,OAAO;QACL,GAAG,EAAE,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC;QAC1B,KAAK,EAAE,SAAS;QAChB,SAAS,EAAE,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC;KAClC,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAC1C,OAAO,EAAE,YAAY,EAAkB,MAAM,iBAAiB,CAAC;AAC/D,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/adapters/node/index.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAC1C,OAAO,EAAE,YAAY,EAAkB,MAAM,iBAAiB,CAAC;AAC/D,OAAO,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAgBjD,MAAM,UAAU,YAAY,CAAC,CAAqB;IAChD,OAAO;QACL,GAAG,EAAE,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC;QAC1B,KAAK,EAAE,SAAS;QAChB,SAAS,EAAE,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC;KAClC,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAC1C,OAAO,EAAE,YAAY,EAAkB,MAAM,iBAAiB,CAAC;AAC/D,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC"}

package/dist/adapters/node/list-entries.io.d.ts

@@ -0,0 +1,3 @@
+import type { ListEntries } from "../../ports/list-entries.ts";
+export declare const nodeListEntries: ListEntries;
+//# sourceMappingURL=list-entries.io.d.ts.map

package/dist/adapters/node/list-entries.io.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"list-entries.io.d.ts","sourceRoot":"","sources":["../../../src/adapters/node/list-entries.io.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAY,WAAW,EAAE,MAAM,6BAA6B,CAAC;AAQzE,eAAO,MAAM,eAAe,EAAE,WAa7B,CAAC"}

package/dist/adapters/node/list-entries.io.js

@@ -0,0 +1,24 @@
+/** `ListEntries` over `node:fs`: `readdir` with its file types, which `lstat` each entry, never following a link. */
+import { readdirSync } from "node:fs";
+import { codeOf } from "../../domain/text.js";
+/** What a directory entry is, its link never followed. */
+const kindOf = (d) => {
+    if (d.isSymbolicLink())
+        return "symlink";
+    return d.isDirectory() ? "dir" : "file";
+};
+export const nodeListEntries = (dir) => {
+    try {
+        return readdirSync(dir, { withFileTypes: true }).map((d) => ({
+            name: d.name,
+            kind: kindOf(d),
+        }));
+    }
+    catch (e) {
+        const code = codeOf(e);
+        if (code === "ENOENT" || code === "ENOTDIR")
+            return [];
+        throw e;
+    }
+};
+//# sourceMappingURL=list-entries.io.js.map

package/dist/adapters/node/list-entries.io.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"list-entries.io.js","sourceRoot":"","sources":["../../../src/adapters/node/list-entries.io.ts"],"names":[],"mappings":"AAAA,qHAAqH;AACrH,OAAO,EAAE,WAAW,EAAe,MAAM,SAAS,CAAC;AAEnD,OAAO,EAAE,MAAM,EAAE,MAAM,sBAAsB,CAAC;AAG9C,0DAA0D;AAC1D,MAAM,MAAM,GAAG,CAAC,CAAmB,EAAoB,EAAE;IACvD,IAAI,CAAC,CAAC,cAAc,EAAE;QAAE,OAAO,SAAS,CAAC;IACzC,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;AAC1C,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,eAAe,GAAgB,CAC1C,GAAiB,EACI,EAAE;IACvB,IAAI,CAAC;QACH,OAAO,WAAW,CAAC,GAAG,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC3D,IAAI,EAAE,CAAC,CAAC,IAAI;YACZ,IAAI,EAAE,MAAM,CAAC,CAAC,CAAC;SAChB,CAAC,CAAC,CAAC;IACN,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,MAAM,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QACvB,IAAI,IAAI,KAAK,QAAQ,IAAI,IAAI,KAAK,SAAS;YAAE,OAAO,EAAE,CAAC;QACvD,MAAM,CAAC,CAAC;IACV,CAAC;AACH,CAAC,CAAC"}

package/dist/adapters/study-registry/index.d.ts

@@ -12,9 +12,14 @@
  * Its texts may be empty — the template's are — and the parser says which: a plan comes out ready or
  * a draft naming its empty texts, so nothing downstream looks at a text again. A plan still named
  * `prereg.json` has a loose schema of its own.
+ *
+ * A plan's `mode` (docs/design/study-modes.md) is parsed here too, strictly, a union on its `kind`:
+ * one mode at most, a glob that leaves the study's folder or a decision outside the paper refused,
+ * and a measurement's plan ready only with a mode.
  */
 import { z } from "zod";
-import { type Approval, type AuthorCheck, type Measurement, type ParsedPlan, type ParsedRegistry, type Requirement, type Study, type StudyPlan, type StudyRegistry } from "../../domain/study-registry.ts";
+import { type Approval, type AuthorCheck, type Measurement, type ParsedPlan, type ParsedRegistry, type Requirement, type Study, type PlanTextField, type StudyKind, type StudyPlan, type StudyRegistry } from "../../domain/study-registry.ts";
+import { type Decision, type StudyMode } from "../../domain/study-mode.ts";
 import type { StudyRegistryCodec } from "../../ports/study-registry-codec.ts";
 declare const study: z.ZodObject<{
     id: z.ZodString;
@@ -141,6 +146,22 @@ declare const authorCheck: z.ZodObject<{
     date: z.ZodISODate;
     quote: z.ZodString;
 }, z.core.$strict>;
+declare const decisionShape: z.ZodObject<{
+    file: z.ZodString;
+    note: z.ZodString;
+}, z.core.$strict>;
+/** How the outcomes are kept from the decisions: exactly one mode, by its `kind`. */
+declare const mode: z.ZodDiscriminatedUnion<[z.ZodObject<{
+    kind: z.ZodLiteral<"decide_before_run">;
+    outputs: z.ZodArray<z.ZodString>;
+    decision: z.ZodObject<{
+        file: z.ZodString;
+        note: z.ZodString;
+    }, z.core.$strict>;
+}, z.core.$strict>, z.ZodObject<{
+    kind: z.ZodLiteral<"exploratory">;
+    reason: z.ZodString;
+}, z.core.$strict>], "kind">;
 /** A plan's shape: closed at every level; the paper's own keys go in `extra`. Null is the one "none". */
 declare const planShape: z.ZodObject<{
     question: z.ZodString;
@@ -165,6 +186,17 @@ declare const planShape: z.ZodObject<{
         quote: z.ZodString;
     }, z.core.$strict>>;
     extra: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    mode: z.ZodOptional<z.ZodDiscriminatedUnion<[z.ZodObject<{
+        kind: z.ZodLiteral<"decide_before_run">;
+        outputs: z.ZodArray<z.ZodString>;
+        decision: z.ZodObject<{
+            file: z.ZodString;
+            note: z.ZodString;
+        }, z.core.$strict>;
+    }, z.core.$strict>, z.ZodObject<{
+        kind: z.ZodLiteral<"exploratory">;
+        reason: z.ZodString;
+    }, z.core.$strict>], "kind">>;
 }, z.core.$strict>;
 /**
  * A plan under its old name, `prereg.json`, written by hand before the plan had a schema: open at
@@ -216,8 +248,8 @@ declare const legacyAsPlan: z.ZodPipe<z.ZodObject<{
 type ReadyOrDraft = Exclude<ParsedPlan, {
     readonly kind: "unreadable";
 }>;
-/** A `plan.json`: strict, then ready or draft. */
-declare const plan: z.ZodPipe<z.ZodObject<{
+/** A `plan.json` of a study of `kind`: strict, then ready or draft — a measurement's ready only with its mode. */
+declare const planFor: (kind: StudyKind) => z.ZodPipe<z.ZodObject<{
     question: z.ZodString;
     population: z.ZodObject<{
         source: z.ZodString;
@@ -240,13 +272,24 @@ declare const plan: z.ZodPipe<z.ZodObject<{
         quote: z.ZodString;
     }, z.core.$strict>>;
     extra: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    mode: z.ZodOptional<z.ZodDiscriminatedUnion<[z.ZodObject<{
+        kind: z.ZodLiteral<"decide_before_run">;
+        outputs: z.ZodArray<z.ZodString>;
+        decision: z.ZodObject<{
+            file: z.ZodString;
+            note: z.ZodString;
+        }, z.core.$strict>;
+    }, z.core.$strict>, z.ZodObject<{
+        kind: z.ZodLiteral<"exploratory">;
+        reason: z.ZodString;
+    }, z.core.$strict>], "kind">>;
 }, z.core.$strict>, z.ZodTransform<{
     readonly kind: "ready";
     readonly plan: StudyPlan;
 } | {
     readonly kind: "draft";
     readonly plan: import("../../domain/study-registry.ts").DraftPlan;
-    readonly empty: readonly import("../../domain/study-registry.ts").PlanTextField[];
+    readonly empty: readonly PlanTextField[];
 }, {
     question: string;
     population: {
@@ -270,8 +313,23 @@ declare const plan: z.ZodPipe<z.ZodObject<{
         quote: string;
     } | null;
     extra?: Record<string, unknown> | undefined;
+    mode?: {
+        kind: "decide_before_run";
+        outputs: string[];
+        decision: {
+            file: string;
+            note: string;
+        };
+    } | {
+        kind: "exploratory";
+        reason: string;
+    } | undefined;
 }>>;
-/** A `prereg.json`: loose, mapped onto the plan, then ready or draft. */
+/**
+ * A `prereg.json`: loose, mapped onto the plan, then ready or draft. Written before modes existed, it
+ * is never asked for one; `repro/study-plan-name` already asks to move it to `plan.json`, where the
+ * strict parser does.
+ */
 declare const legacyPlan: z.ZodPipe<z.ZodPipe<z.ZodObject<{
     question: z.ZodString;
     population: z.ZodObject<{
@@ -318,7 +376,7 @@ declare const legacyPlan: z.ZodPipe<z.ZodPipe<z.ZodObject<{
 } | {
     readonly kind: "draft";
     readonly plan: import("../../domain/study-registry.ts").DraftPlan;
-    readonly empty: readonly import("../../domain/study-registry.ts").PlanTextField[];
+    readonly empty: readonly PlanTextField[];
 }, StudyPlan>>;
 /** `T`, readonly all the way down: zod's outputs are mutable, the domain's are not. */
 type Frozen<T> = T extends readonly (infer U)[] ? readonly Frozen<U>[] : T extends object ? {
@@ -341,15 +399,17 @@ export type SchemasAreTheDomain = [
     Same<z.output<typeof authorCheck>, AuthorCheck>,
     Same<z.output<typeof planShape>, StudyPlan>,
     Same<z.output<typeof legacyAsPlan>, StudyPlan>,
-    Same<z.output<typeof plan>, ReadyOrDraft>,
-    Same<z.output<typeof legacyPlan>, ReadyOrDraft>
+    Same<z.output<ReturnType<typeof planFor>>, ReadyOrDraft>,
+    Same<z.output<typeof legacyPlan>, ReadyOrDraft>,
+    Same<z.output<typeof mode>, StudyMode>,
+    Same<z.output<typeof decisionShape>, Decision>
 ] extends true[] ? true : never;
 /** The proof is used, so the build checks it. */
 export declare const SCHEMAS_ARE_THE_DOMAIN: SchemasAreTheDomain;
 /** A `studies.json`'s text, parsed once at the boundary: the registry, or every reason it is not one. */
 export declare function parseStudyRegistry(text: string): ParsedRegistry;
-/** A `plan.json`: strict. */
-export declare const parseStudyPlan: (text: string) => ParsedPlan;
+/** A `plan.json` of a study of `kind`: strict. */
+export declare const parseStudyPlan: (text: string, kind: StudyKind) => ParsedPlan;
 /** A plan still named `prereg.json`: loose, read only when a row names it. */
 export declare const parseLegacyPlan: (text: string) => ParsedPlan;
 export declare const studyRegistryCodec: StudyRegistryCodec;

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