paperlint 10.2.0 → 10.4.0

package/dist/domain/study-mode.js

@@ -0,0 +1,45 @@
+/**
+ * A STUDY'S MODE — how its outcomes are kept from the decisions about its inputs. A measurement study
+ * declares exactly one (docs/design/study-modes.md):
+ *
+ *   decide_before_run   the default: the author's decisions on the inputs (exclusions, veto, the
+ *                       sample's approval) are committed BEFORE any output exists. No key, no extra
+ *                       tool: git's history is the proof of order, and
+ *                       `repro/outputs-before-decision` re-checks it on every lint.
+ *   exploratory         no gate: the study is exploratory and is reported as such, with its reason.
+ *
+ * "None" and "two at once" cannot be written: the plan holds one `mode`, a union on its `kind`, and a
+ * measurement study's plan is not ready without it (the parser, `src/adapters/study-registry/`).
+ *
+ * Paths: `outputs` are globs relative to the study's folder (the study's results live there); the
+ * decision's `file` is relative to the PAPER's folder, so a decision may live beside the study or
+ * anywhere in the paper (`research/decisions.md`). Pure.
+ */
+import { posix } from "node:path";
+import { REPRO_DIR } from "./repro-layout.js";
+/**
+ * The kinds of study whose plan must declare a mode: the ones that measure. A spike, a tool, a data
+ * set, an artifact or a salvage may omit it.
+ */
+export const MODE_REQUIRED = ["measurement"];
+/** Whether a study of `kind` must declare its mode. */
+export const needsMode = (kind) => MODE_REQUIRED.includes(kind);
+/** `paperPath` relative to the study folder `folder`, when it lies inside it; else null. */
+export const inStudy = (folder, paperPath) => {
+    const prefix = `${REPRO_DIR}/${folder}/`;
+    const n = posix.normalize(paperPath);
+    return n.startsWith(prefix) ? n.slice(prefix.length) : null;
+};
+/** Whether the file at `path` (relative to the study's folder) is one of `outputs`. */
+export const isOutput = (outputs, path) => outputs.some((g) => posix.matchesGlob(path, g));
+/**
+ * The output glob that matches the study's own decision file, when the file lies in the study's
+ * folder: the decision would be "produced" by the run it gates.
+ */
+export const decisionAsOutput = (folder, m) => {
+    const rel = inStudy(folder, m.decision.file);
+    return rel === null
+        ? null
+        : (m.outputs.find((g) => posix.matchesGlob(rel, g)) ?? null);
+};
+//# sourceMappingURL=study-mode.js.map

package/dist/domain/study-mode.js.map

@@ -0,0 +1 @@
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package/dist/domain/study-registry.d.ts

@@ -1,4 +1,6 @@
 import { STUDIES_FILE } from "./repro-layout.ts";
+import { type StudyMode } from "./study-mode.ts";
+import { type IndexHistory } from "./index-columns.ts";
 /** The registry, at the top of the paper's `repro/`; the layout allows it there. */
 export { STUDIES_FILE };
 export declare const STUDY_KINDS: readonly ["measurement", "spike", "tooling", "data", "artifact", "salvage"];
@@ -17,6 +19,45 @@ export declare const DEFAULT_KIND: StudyKind;
 /** The markers around the generated index in `repro/README.md`. Fixed: the rule finds the block by them. */
 export declare const INDEX_BEGIN = "<!-- studies:begin \u2014 generated from studies.json by `paperlint studies index`; do not edit -->";
 export declare const INDEX_END = "<!-- studies:end -->";
+/** What a measurement is to the paper: the claim it carries, or what that claim is compared with. */
+export declare const MEASUREMENT_ROLES: readonly ["headline", "baseline"];
+export type MeasurementRole = (typeof MEASUREMENT_ROLES)[number];
+/**
+ * The statuses of a study that has run: its plan was due before the first run. A `designing` study
+ * has not run yet, and a `dropped` one never will.
+ */
+export declare const RAN_STATUSES: readonly StudyStatus[];
+/** A requirement of the author's on the paper's measurements, in their words. */
+export interface Requirement {
+    readonly id: string;
+    /** The author's words, verbatim. */
+    readonly text: string;
+    readonly date: string;
+    /** Where they said it: a chat, a message, a review comment. */
+    readonly source: string;
+}
+/** Someone's approval, in their words: of a measurement, or of a study's drawn units. */
+export interface Approval {
+    readonly by: string;
+    readonly date: string;
+    readonly quote: string;
+    readonly source?: string | undefined;
+}
+/**
+ * One measurement: what the paper measures, made of one or more studies (a pilot, the main run, a
+ * replication) whose rows name it in `measurement`. A measurement may carry more fields.
+ */
+export interface Measurement {
+    readonly id: string;
+    readonly title: string;
+    /** The research question it answers. */
+    readonly rq?: string | undefined;
+    readonly role: MeasurementRole;
+    readonly approval?: Approval | undefined;
+    /** The ids of the requirements it must meet. */
+    readonly requirements?: readonly string[] | undefined;
+    readonly [extra: string]: unknown;
+}
 /**
  * One study. The named fields are the registry's; a row may carry more (a paper merges its own
  * measurement metadata into it), and they are kept as they are.
@@ -33,12 +74,111 @@ export interface Study {
     readonly result_file?: string | undefined;
     readonly superseded_by?: string | undefined;
     readonly in_paper: InPaper;
+    /** The id of the measurement the study belongs to. */
+    readonly measurement?: string | undefined;
+    /** The study's plan: a path inside its folder, `plan.json`. */
+    readonly plan?: string | undefined;
     readonly [extra: string]: unknown;
 }
 export interface StudyRegistry {
     readonly prefix: string;
+    /** The paper's author: the one person whose approval makes a measurement the headline. */
+    readonly author?: string | undefined;
+    readonly requirements?: readonly Requirement[] | undefined;
+    /** When present, every row's `measurement` names one of them. */
+    readonly measurements?: readonly Measurement[] | undefined;
     readonly studies: readonly Study[];
 }
+/** The file `paperlint studies new` writes a study's plan to, beside its README.md. */
+export declare const PLAN_FILE = "plan.json";
+/** The plan's name before it was a plan: still read as one, and reported by `repro/study-plan-name`. */
+export declare const LEGACY_PLAN_FILE = "prereg.json";
+/** The author's check of a study's drawn units, before the runs. */
+export type AuthorCheck = Omit<Approval, "source">;
+/**
+ * A study's plan, fixed before its runs: what it measures, on what population and how it is drawn,
+ * its arms, its primary outcome, and the author's check of the drawn units. Closed: a key the paper
+ * needs of its own goes in `extra`, so a misspelt key is an error, not a key nobody reads. "Not
+ * known" and "not yet" have one spelling each: null.
+ */
+export interface StudyPlan {
+    readonly question: string;
+    readonly population: {
+        /** Where the units come from: the census, crawl or registry, with its date. */
+        readonly source: string;
+        readonly draw: Draw;
+    };
+    /** The conditions compared, each name once; none for a census. */
+    readonly arms: readonly {
+        readonly name: string;
+    }[];
+    readonly primary_outcome: string;
+    /** null: the author has not checked the drawn units yet. Only a ready plan carries one. */
+    readonly author_check: AuthorCheck | null;
+    /** The paper's own keys: hypotheses, models, budget … Kept, never read; none is a plan field. */
+    readonly extra?: Readonly<Record<string, unknown>> | undefined;
+    /**
+     * How the outcomes are kept from the decisions on the inputs: decided before the run, or
+     * exploratory (src/domain/study-mode.ts). A measurement study's plan is not ready without it.
+     */
+    readonly mode?: StudyMode | undefined;
+}
+/**
+ * How the sample is drawn from the population: a seeded draw, whose seed is part of it, or all of
+ * the population (a census), which has none. The size of the population is not stored: it is
+ * counted from the source, and a stored copy would only contradict it.
+ */
+export type Draw = {
+    readonly kind: "seeded";
+    /** `random`, `stratified` … */
+    readonly method: string;
+    readonly seed: string | number;
+} | {
+    readonly kind: "all";
+    /** `census` … */
+    readonly method: string;
+};
+/** The top-level fields of a plan: none of them may be a key of `extra`. */
+export declare const PLAN_FIELDS: readonly ["question", "population", "arms", "primary_outcome", "author_check", "extra", "mode"];
+/** A plan with empty required texts: the author has not approved it. */
+export type DraftPlan = StudyPlan & {
+    readonly author_check: null;
+};
+/** The texts a plan must fill before the study runs, in the order they are named. */
+export declare const PLAN_TEXT_FIELDS: readonly ["question", "population.source", "population.draw.method", "primary_outcome", "mode", "mode.outputs", "mode.decision.file", "mode.decision.note", "mode.reason"];
+export type PlanTextField = (typeof PLAN_TEXT_FIELDS)[number];
+/**
+ * A plan's text, parsed: ready (every required text filled), a draft (its empty texts named, and
+ * no check of the author's: only a complete plan is approved), or the reasons it is not a plan. Whether a plan is complete is decided here, once, by the parser.
+ */
+export type ParsedPlan = {
+    readonly kind: "ready";
+    readonly plan: StudyPlan;
+} | {
+    readonly kind: "draft";
+    readonly plan: DraftPlan;
+    readonly empty: readonly PlanTextField[];
+} | {
+    readonly kind: "unreadable";
+    readonly why: string;
+};
+/** What a study's folder holds of the plan its row names: absent, or what its text parsed to. */
+export type PlanState = {
+    readonly kind: "absent";
+} | ParsedPlan;
+/** The decision file `paperlint studies new` names for a study in `folder`, relative to the paper. */
+export declare const decisionPath: (folder: string) => string;
+/** The decision file's name, beside the plan. */
+export declare const DECISION_FILE = "decision.md";
+/**
+ * The plan `paperlint studies new` writes for a study of `kind` in `folder`: every field present, its
+ * value to fill. Its draw is of all the population (a census); a sampled study changes it to
+ * `{ "kind": "seeded", "method", "seed" }`. A study that must declare its mode gets the default one,
+ * decided before the run, its decision file named and its outputs and note to fill.
+ */
+export declare const planTemplate: (kind: StudyKind, folder: string) => DraftPlan;
+/** A plan's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
+export declare const planText: (p: StudyPlan) => string;
 /** A registry's text, parsed: the registry, or the one reason it is not one. */
 export type ParsedRegistry = {
     readonly ok: true;
@@ -66,6 +206,8 @@ export interface StudyInput {
     readonly readme: string | null;
     /** Each `<folder>/<result_file>` of the registry that is a file. */
     readonly existingResults: ReadonlySet<string>;
+    /** The plan each row names, by `<folder>/<plan>`; one not listed is absent. */
+    readonly plans: ReadonlyMap<string, PlanState>;
 }
 /** One defect of the registry, of a row, or of the index. */
 export type StudyFinding = {
@@ -117,35 +259,134 @@ export type StudyFinding = {
 } | {
     readonly problem: "stale-index";
     readonly why: "no-readme" | "no-markers" | "differs";
+} | {
+    readonly problem: "unknown-measurement";
+    readonly id: string;
+    readonly measurement: string;
+} | {
+    readonly problem: "empty-measurement";
+    readonly measurement: string;
+} | {
+    readonly problem: "unknown-requirement";
+    readonly measurement: string;
+    readonly requirement: string;
+} | {
+    readonly problem: "headline-approval";
+    readonly measurement: string;
+    readonly why: "missing";
+    readonly author: string | null;
+} | {
+    readonly problem: "headline-approval";
+    readonly measurement: string;
+    readonly why: "not-author";
+    readonly by: string;
+    readonly author: string;
+} | {
+    readonly problem: "bad-plan";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "missing" | "outside";
+} | {
+    readonly problem: "bad-plan";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "unreadable";
+    readonly reasons: string;
+} | {
+    readonly problem: "bad-plan";
+    readonly id: string;
+    readonly path: string;
+    readonly why: "unfilled";
+    readonly fields: readonly PlanTextField[];
+    readonly status: StudyStatus;
+} | {
+    readonly problem: "author-check";
+    readonly id: string;
+    readonly measurement: string;
+    readonly status: StudyStatus;
+    readonly why: "no-plan" | "missing";
+} | {
+    readonly problem: "author-check";
+    readonly id: string;
+    readonly measurement: string;
+    readonly status: StudyStatus;
+    readonly why: "not-author";
+    readonly by: string;
+    readonly author: string;
+} | {
+    readonly problem: "legacy-plan";
+    readonly id: string;
+    readonly path: string;
 };
+/** The findings `repro/study-plan-name` reports, a warning; every other is `repro/study-registered`'s. */
+export declare const PLAN_NAME_PROBLEMS: readonly StudyFinding["problem"][];
 /** The id after the highest one in `r`, at least two digits: `P1-S01` in an empty registry. */
 export declare function nextStudyId(r: StudyRegistry): string;
 /** The slug of a title: lowercase Latin letters and digits, words joined by single hyphens; "" when none. */
 export declare const studySlug: (title: string) => string;
 /** The number of words in a title. */
 export declare const titleWords: (title: string) => number;
+/**
+ * Whether `path` stays inside the folder it is relative to. A backslash or a Windows absolute path
+ * is refused outright: `posix.normalize` does not resolve `..\\`, while the host's `join` may.
+ */
+export declare const isInside: (path: string) => boolean;
+/**
+ * Whether `folder` names one folder directly inside `repro/`: not empty, not `.` or `..`, and no
+ * separator or NUL. Every command and rule that reads a study's folder reads only such a one: a row
+ * naming `../x` would have them read and write outside the paper.
+ */
+export declare const isFolderName: (folder: string) => boolean;
+/**
+ * The `<folder>/<plan>` of each row whose plan lies inside its folder: the files the judge needs read
+ * (`StudyInput.plans`). A plan outside its folder is reported without being read.
+ */
+export declare const planKeys: (r: StudyRegistry) => readonly string[];
+/** Each plan `planKeys` names, with the kind of the study whose row names it: what its parser needs. */
+export declare const planRefs: (r: StudyRegistry) => readonly {
+    readonly key: string;
+    readonly folder: string;
+    readonly kind: StudyKind;
+}[];
 /**
  * Every defect of a paper's study registry, in a fixed order: the registry itself; the unregistered
  * folders; each row's; the index. Pure.
  */
 export declare function judgeStudies(input: StudyInput): readonly StudyFinding[];
+/**
+ * What the index is generated from beyond the registry: the plans by `<folder>/<plan>` (as
+ * `StudyInput.plans`), and the history of each decide-first study by id. A study with no history
+ * listed shows `not read` — the lint, which never compares those columns, asks none.
+ */
+export interface IndexInput {
+    readonly plans: ReadonlyMap<string, PlanState>;
+    readonly history: ReadonlyMap<string, IndexHistory>;
+}
 /**
  * The index of `r`: a markdown table, a row per study in registry order, each column padded to its
  * widest cell (at least 3), the way prettier writes a table — so formatting the README leaves it as
  * it is.
  */
-export declare function studyIndex(r: StudyRegistry): string;
-/** Whether `readme` holds the index of `r`, whatever padding a formatter gave its table. */
-export declare function indexInSync(readme: string | null, r: StudyRegistry): boolean;
+export declare function studyIndex(r: StudyRegistry, at: IndexInput): string;
+/**
+ * Whether `readme` holds the index of `r`, whatever padding a formatter gave its table and whatever
+ * its two columns read from git say: what `repro/study-registered` checks.
+ */
+export declare const indexInSync: (readme: string | null, r: StudyRegistry, at: IndexInput) => boolean;
+/**
+ * Whether `readme` holds the index of `r` in every column, whatever its padding: when it does,
+ * `studies index` leaves the README as it is, so the padding a formatter gave the table stays.
+ */
+export declare const indexCurrent: (readme: string | null, r: StudyRegistry, at: IndexInput) => boolean;
 /** The index between its markers, a blank line on each side. */
-export declare const indexBlock: (r: StudyRegistry) => string;
+export declare const indexBlock: (r: StudyRegistry, at: IndexInput) => string;
 /** The text between the markers of `readme`; null when it has no begin marker followed by an end one. */
 export declare function embeddedIndex(readme: string): string | null;
 /**
  * `readme` with its index regenerated from `r`: the block replaced in place, appended when the README
  * has none, a README of its own when there is none.
  */
-export declare function withIndex(readme: string | null, r: StudyRegistry): string;
+export declare function withIndex(readme: string | null, r: StudyRegistry, at: IndexInput): string;
 /** The registry's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
 export declare const registryText: (r: StudyRegistry) => string;
 /** The one text a finding is reported with: what is wrong, what to do, and the rule's page. */
@@ -159,11 +400,8 @@ export interface NewStudy {
     /** The day it is registered, `YYYY-MM-DD`. */
     readonly date: string;
 }
-/**
- * `r` with a new study appended: the next id, the folder `<id>-<slug>`, `status: designing`,
- * `in_paper: no` and an empty question; or why the title cannot make one.
- */
-export declare function addStudy(r: StudyRegistry, n: NewStudy): {
+/** A registry with a study added, and the study; or why it could not be. */
+export type Added = {
     readonly ok: true;
     readonly registry: StudyRegistry;
     readonly study: Study;
@@ -171,6 +409,11 @@ export declare function addStudy(r: StudyRegistry, n: NewStudy): {
     readonly ok: false;
     readonly why: string;
 };
+/**
+ * `r` with a new study appended: the next id, the folder `<id>-<slug>`, `status: designing`,
+ * `in_paper: no`, an empty question and its plan, `plan.json`; or why the title cannot make one.
+ */
+export declare function addStudy(r: StudyRegistry, n: NewStudy): Added;
 /** The `README.md` a new study's folder starts with: its id and title in frontmatter, then the sections. */
 export declare const studyReadme: (s: Study) => string;
 //# sourceMappingURL=study-registry.d.ts.map

package/dist/domain/study-registry.d.ts.map

@@ -1 +1 @@
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