paperlint 10.2.0 → 10.3.0

package/dist/domain/study-registry.js

@@ -47,6 +47,55 @@ export const INDEX_BEGIN = "<!-- studies:begin — generated from studies.json b
 export const INDEX_END = "<!-- studies:end -->";
 /** The README written when `repro/` has none. */
 const INDEX_HEADING = "# Reproduction index";
+/** What a measurement is to the paper: the claim it carries, or what that claim is compared with. */
+export const MEASUREMENT_ROLES = ["headline", "baseline"];
+/**
+ * The statuses of a study that has run: its plan was due before the first run. A `designing` study
+ * has not run yet, and a `dropped` one never will.
+ */
+export const RAN_STATUSES = [
+    "running",
+    "done",
+    "stopped",
+    "superseded",
+];
+/** The file `paperlint studies new` writes a study's plan to, beside its README.md. */
+export const PLAN_FILE = "plan.json";
+/** The plan's name before it was a plan: still read as one, and reported by `repro/study-plan-name`. */
+export const LEGACY_PLAN_FILE = "prereg.json";
+/** The top-level fields of a plan: none of them may be a key of `extra`. */
+export const PLAN_FIELDS = [
+    "question",
+    "population",
+    "arms",
+    "primary_outcome",
+    "author_check",
+    "extra",
+];
+/** The texts a plan must fill before the study runs, in the order they are named. */
+export const PLAN_TEXT_FIELDS = [
+    "question",
+    "population.source",
+    "population.draw.method",
+    "primary_outcome",
+];
+/**
+ * The plan `paperlint studies new` writes: every field present, its value to fill. Its draw is of
+ * all the population (a census); a sampled study changes it to `{ "kind": "seeded", "method", "seed" }`.
+ */
+export const planTemplate = () => ({
+    question: "",
+    population: { source: "", draw: { kind: "all", method: "" } },
+    arms: [],
+    primary_outcome: "",
+    author_check: null,
+});
+/** A plan's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
+export const planText = (p) => `${JSON.stringify(p, null, 2)}\n`;
+/** The findings `repro/study-plan-name` reports, a warning; every other is `repro/study-registered`'s. */
+export const PLAN_NAME_PROBLEMS = [
+    "legacy-plan",
+];
 /** The number of an id of `prefix` (`P1-S07` → 7); null for an id of another shape. */
 function idNumber(prefix, id) {
     const m = new RegExp(`^${prefix}-S(\\d{2,})$`, "u").exec(id);
@@ -79,6 +128,11 @@ const isInside = (path) => {
     const n = posix.normalize(path);
     return n !== ".." && !n.startsWith("../");
 };
+/**
+ * The `<folder>/<plan>` of each row whose plan lies inside its folder: the files the judge needs read
+ * (`StudyInput.plans`). A plan outside its folder is reported without being read.
+ */
+export const planKeys = (r) => r.studies.flatMap((s) => s.plan !== undefined && isInside(s.plan) ? [`${s.folder}/${s.plan}`] : []);
 /** Whether the row is the first of the registry with its value of `key`. */
 const isFirst = ({ r, s, i }, key) => r.studies.findIndex((o) => key(o) === key(s)) === i;
 const badId = ({ r, s }) => idNumber(r.prefix, s.id) === null
@@ -139,6 +193,82 @@ const noSuccessor = ({ r, s }) => {
         ? { problem: "no-successor", id: s.id, superseded_by: by }
         : null;
 };
+/** A row's `measurement`, when the registry declares its measurements, names one of them. */
+const unknownMeasurement = ({ r, s }) => r.measurements === undefined ||
+    s.measurement === undefined ||
+    r.measurements.some((m) => m.id === s.measurement)
+    ? null
+    : { problem: "unknown-measurement", id: s.id, measurement: s.measurement };
+/** The state of the plan the row names (absent when outside its folder); null when it names none. */
+const planOf = ({ s, input }) => {
+    if (s.plan === undefined)
+        return null;
+    return isInside(s.plan)
+        ? (input.plans.get(`${s.folder}/${s.plan}`) ?? { kind: "absent" })
+        : { kind: "absent" };
+};
+const hasRun = (s) => RAN_STATUSES.includes(s.status);
+/** The finding for the plan `path` of `s`, in the state its folder holds it; null when it stands. */
+const planFinding = (s, path, state) => {
+    const at = { problem: "bad-plan", id: s.id, path };
+    switch (state.kind) {
+        case "absent":
+            return { ...at, why: "missing" };
+        case "unreadable":
+            return { ...at, why: "unreadable", reasons: state.why };
+        case "draft":
+            return hasRun(s)
+                ? { ...at, why: "unfilled", fields: state.empty, status: s.status }
+                : null;
+        case "ready":
+            return null;
+    }
+};
+/** The plan a row names is a file inside its folder, of the schema, and ready once the study has run. */
+const badPlan = ({ s, input }) => {
+    const path = s.plan;
+    if (path === undefined)
+        return null;
+    if (!isInside(path))
+        return { problem: "bad-plan", id: s.id, path, why: "outside" };
+    return planFinding(s, path, input.plans.get(`${s.folder}/${path}`) ?? { kind: "absent" });
+};
+/** A plan under its old name: read, and named for renaming. */
+const legacyPlan = ({ s }) => s.plan !== undefined && posix.basename(s.plan) === LEGACY_PLAN_FILE
+    ? { problem: "legacy-plan", id: s.id, path: s.plan }
+    : null;
+/**
+ * A study of a headline measurement that has run carries the author's check of its drawn units in
+ * its plan, by the registry's author when it names one. A plan that cannot be read is `badPlan`'s.
+ */
+const authorCheck = (row) => {
+    const { r, s } = row;
+    const m = r.measurements?.find((o) => o.id === s.measurement);
+    if (m?.role !== "headline" || !hasRun(s))
+        return null;
+    const at = {
+        problem: "author-check",
+        id: s.id,
+        measurement: m.id,
+        status: s.status,
+    };
+    const state = planOf(row);
+    if (state === null)
+        return { ...at, why: "no-plan" };
+    const wrong = state.kind === "ready" || state.kind === "draft"
+        ? checkProblem(r, state.plan)
+        : null;
+    return wrong === null ? null : { ...at, ...wrong };
+};
+/** What a read plan's author check lacks: it is not there, or it is not the registry's author's. */
+const checkProblem = (r, plan) => {
+    const check = plan.author_check;
+    if (check === null)
+        return { why: "missing" };
+    return r.author === undefined || check.by === r.author
+        ? null
+        : { why: "not-author", by: check.by, author: r.author };
+};
 /** The checks of a row, in the order their findings are reported. */
 const ROW_CHECKS = [
     badId,
@@ -150,7 +280,50 @@ const ROW_CHECKS = [
     noResult,
     resultFile,
     noSuccessor,
+    unknownMeasurement,
+    badPlan,
+    legacyPlan,
+    authorCheck,
 ];
+/** A headline measurement's approval: missing, or not the registry's author's; null when it stands. */
+const headlineApproval = (r, m) => {
+    if (m.role !== "headline")
+        return null;
+    const author = r.author ?? null;
+    if (m.approval === undefined)
+        return {
+            problem: "headline-approval",
+            measurement: m.id,
+            why: "missing",
+            author,
+        };
+    return author === null || m.approval.by === author
+        ? null
+        : {
+            problem: "headline-approval",
+            measurement: m.id,
+            why: "not-author",
+            by: m.approval.by,
+            author,
+        };
+};
+/** What is wrong with one measurement: no study, a requirement not held, a headline not approved. */
+const judgeMeasurement = (r, m) => {
+    const approval = headlineApproval(r, m);
+    return [
+        ...(r.studies.some((s) => s.measurement === m.id)
+            ? []
+            : [{ problem: "empty-measurement", measurement: m.id }]),
+        ...(m.requirements ?? [])
+            .filter((id) => !(r.requirements ?? []).some((q) => q.id === id))
+            .map((requirement) => ({
+            problem: "unknown-requirement",
+            measurement: m.id,
+            requirement,
+        })),
+        ...(approval === null ? [] : [approval]),
+    ];
+};
 /** What is wrong with a row, in a fixed order. */
 const judgeRow = (row) => ROW_CHECKS.map((check) => check(row)).filter((f) => f !== null);
 /** Whether the README's index is the one `r` generates; the finding when not. */
@@ -188,6 +361,7 @@ export function judgeStudies(input) {
             next,
         })),
         ...r.studies.flatMap((s, i) => judgeRow({ r, s, i, input })),
+        ...(r.measurements ?? []).flatMap((m) => judgeMeasurement(r, m)),
         ...(index === null ? [] : [index]),
     ];
 }
@@ -284,6 +458,13 @@ const NEW_STUDY = '`npx paperlint studies new <paper-dir> "<title>"`';
 const RUN_INDEX = "What to do: run `npx paperlint studies index <paper-dir>`; the block is generated, never edited by hand.";
 const RENAME = "give each other row the next free id and rename its folder to match";
 const tick = (s) => `\`${s}\``;
+/** `a`, `b` and `c`: names in backticks, the last joined by "and". */
+const listed = (names) => {
+    const t = names.map(tick);
+    return [t.slice(0, -1).join(", "), ...t.slice(-1)]
+        .filter((part) => part !== "")
+        .join(" and ");
+};
 const STALE_HEAD = {
     differs: `The index in \`repro/README.md\` (between the \`studies:begin\` and \`studies:end\` markers) is not the one ${REGISTRY} generates.`,
     "no-markers": "`repro/README.md` has no index of the studies (the `studies:begin` and `studies:end` markers).",
@@ -304,11 +485,47 @@ const HEADS = {
     "result-file": (f) => `${REGISTRY}: the \`result_file\` of ${tick(f.id)}, ${tick(f.path)}, ${f.why === "missing" ? "is not a file in its folder" : "is outside its folder"}. What to do: name a file that exists, relative to the study's folder.`,
     "no-successor": (f) => `${REGISTRY}: ${tick(f.id)} is \`superseded\` ${f.superseded_by === null ? "without `superseded_by`" : `by ${tick(f.superseded_by)}, which is no study in the registry`}. What to do: name the id of the study that replaced it.`,
     "stale-index": (f) => `${STALE_HEAD[f.why]} ${RUN_INDEX}`,
+    "unknown-measurement": (f) => `${REGISTRY}: the row ${tick(f.id)} names the measurement ${tick(f.measurement)}, which is not in \`measurements\`. What to do: add the measurement to \`measurements\`, or correct the row's \`measurement\`.`,
+    "empty-measurement": (f) => `${REGISTRY}: no row names the measurement ${tick(f.measurement)}, and a measurement is made of studies. What to do: set \`"measurement": "${f.measurement}"\` on the rows of its studies, or remove the measurement.`,
+    "unknown-requirement": (f) => `${REGISTRY}: the measurement ${tick(f.measurement)} must meet the requirement ${tick(f.requirement)}, which is not in \`requirements\`. What to do: add the requirement — the author's words verbatim in \`text\`, with its \`date\` and \`source\` — or correct the measurement's \`requirements\`.`,
+    "headline-approval": (f) => f.why === "missing"
+        ? `${REGISTRY}: the measurement ${tick(f.measurement)} is a \`headline\` one and has no \`approval\`. What to do: record ${f.author === null ? "the author's approval" : `the approval of ${f.author}, the registry's \`author\``} — \`by\`, \`date\`, and their words in \`quote\` — or make it a \`baseline\`.`
+        : `${REGISTRY}: the measurement ${tick(f.measurement)} is a \`headline\` one, and its \`approval\` is by ${f.by}, not by the registry's \`author\`, ${f.author}. What to do: only the author approves a headline measurement; record their own approval.`,
+    "bad-plan": (f) => {
+        const of = `the \`plan\` of ${tick(f.id)}, ${tick(f.path)},`;
+        const plan = `The plan of ${tick(f.id)}, ${tick(f.path)} in its folder,`;
+        switch (f.why) {
+            case "missing":
+                return `${REGISTRY}: ${of} is not a file in its folder. What to do: write the plan there (its fields are on the rule's page), or correct the row's \`plan\`.`;
+            case "outside":
+                return `${REGISTRY}: ${of} is outside its folder. What to do: keep the plan in the study's folder, as \`${PLAN_FILE}\`, and name it relative to the folder.`;
+            case "unreadable":
+                return `${plan} is not a study plan: ${f.reasons}. What to do: give it the fields on the rule's page — \`question\`, \`population\`, \`arms\`, \`primary_outcome\`.`;
+            case "unfilled":
+                return `${plan} leaves ${listed(f.fields)} empty, and the study is ${tick(f.status)}: a plan is written before the runs. What to do: fill them in, or set the study back to \`designing\`.`;
+        }
+    },
+    "author-check": (f) => {
+        const head = `${tick(f.id)} is ${tick(f.status)} in the headline measurement ${tick(f.measurement)}, and`;
+        switch (f.why) {
+            case "no-plan":
+                return `${head} its row names no plan to hold the author's check of the drawn units. What to do: write its plan (\`${PLAN_FILE}\` in its folder, named in the row's \`plan\`) with \`author_check\` — \`by\`, \`date\`, and the author's words in \`quote\`.`;
+            case "missing":
+                return `${head} its plan has no \`author_check\`. What to do: show the author the drawn units, then record their answer in the plan's \`author_check\` — \`by\`, \`date\`, and their words in \`quote\`.`;
+            case "not-author":
+                return `${head} the \`author_check\` in its plan is by ${f.by}, not by the registry's \`author\`, ${f.author}. What to do: only the author approves the drawn units of a headline measurement; record their own answer.`;
+        }
+    },
+    "legacy-plan": (f) => `The plan of ${tick(f.id)} is ${tick(f.path)}, its old name; it is read as the plan. What to do: rename it to \`${PLAN_FILE}\` in the study's folder (\`git mv\`) and set the row's \`plan\` to \`${PLAN_FILE}\`.`,
 };
 /** The head of finding `f` of problem `p`: the lookup, typed by the problem. */
 const headOf = (p, f) => HEADS[p](f);
+/** The rule that reports finding `f`. */
+const ruleOf = (f) => PLAN_NAME_PROBLEMS.includes(f.problem)
+    ? "repro/study-plan-name"
+    : "repro/study-registered";
 /** The one text a finding is reported with: what is wrong, what to do, and the rule's page. */
-export const studyMessage = (f) => `${headOf(f.problem, f)}\nRule repro/study-registered: https://github.com/zernie/paperlint/blob/main/docs/rules/repro/study-registered.md`;
+export const studyMessage = (f) => `${headOf(f.problem, f)}\nRule ${ruleOf(f)}: https://github.com/zernie/paperlint/blob/main/docs/rules/${ruleOf(f)}.md`;
 // ── a new study ───────────────────────────────────────────────────────────────────
 /** Whether `s` names a kind of study. */
 export const isStudyKind = (s) => STUDY_KINDS.some((k) => k === s);
@@ -325,7 +542,7 @@ function titleProblem(title) {
 }
 /**
  * `r` with a new study appended: the next id, the folder `<id>-<slug>`, `status: designing`,
- * `in_paper: no` and an empty question; or why the title cannot make one.
+ * `in_paper: no`, an empty question and its plan, `plan.json`; or why the title cannot make one.
  */
 export function addStudy(r, n) {
     const title = n.title.trim().replace(/\s+/gu, " ");
@@ -342,6 +559,7 @@ export function addStudy(r, n) {
         status: "designing",
         date: n.date,
         in_paper: "no",
+        plan: PLAN_FILE,
     };
     return {
         ok: true,
@@ -361,6 +579,10 @@ export const studyReadme = (s) => [
     `Its row in \`../${STUDIES_FILE}\` holds its status. When the study ends, set \`status\`, \`result\`,`,
     "`result_file` and `in_paper` there, then run `npx paperlint studies index <paper-dir>`.",
     "",
+    `Its plan is \`${PLAN_FILE}\`: what it measures, the population and the draw, the arms and the primary`,
+    "outcome, filled in before the first run; the author's check of the drawn units goes in its",
+    "`author_check`.",
+    "",
     "## Question",
     "",
     "## How to run",

package/dist/domain/study-registry.js.map

@@ -1 +1 @@
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package/dist/ports/study-registry-codec.d.ts

@@ -1,11 +1,15 @@
 /**
- * How a `repro/studies.json` becomes a value: its text parsed once, where it enters, against the schema
+ * How a `repro/studies.json`, and a study's `plan.json`, become values: its text parsed once, where it enters, against the schema
  * of `StudyRegistry` (`src/domain/study-registry.ts`). The one implementation is
  * `src/adapters/study-registry/` (zod); `src/cli.ts` wires it.
  */
-import type { ParsedRegistry } from "../domain/study-registry.ts";
+import type { ParsedPlan, ParsedRegistry } from "../domain/study-registry.ts";
 export interface StudyRegistryCodec {
     /** A `studies.json`'s text: the registry, or the one reason it is not one of this schema. */
     readonly parse: (text: string) => ParsedRegistry;
+    /** A study's `plan.json` text, strict: ready, a draft naming its empty texts, or why it is no plan. */
+    readonly parsePlan: (text: string) => ParsedPlan;
+    /** A plan still named `prereg.json`, loose: the same three outcomes. */
+    readonly parseLegacyPlan: (text: string) => ParsedPlan;
 }
 //# sourceMappingURL=study-registry-codec.d.ts.map

package/dist/ports/study-registry-codec.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"study-registry-codec.d.ts","sourceRoot":"","sources":["../../src/ports/study-registry-codec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAElE,MAAM,WAAW,kBAAkB;IACjC,6FAA6F;IAC7F,QAAQ,CAAC,KAAK,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,cAAc,CAAC;CAClD"}
+{"version":3,"file":"study-registry-codec.d.ts","sourceRoot":"","sources":["../../src/ports/study-registry-codec.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAE9E,MAAM,WAAW,kBAAkB;IACjC,6FAA6F;IAC7F,QAAQ,CAAC,KAAK,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,cAAc,CAAC;IACjD,uGAAuG;IACvG,QAAQ,CAAC,SAAS,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,UAAU,CAAC;IACjD,wEAAwE;IACxE,QAAQ,CAAC,eAAe,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,UAAU,CAAC;CACxD"}

package/dist/studies.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"studies.d.ts","sourceRoot":"","sources":["../src/studies.ts"],"names":[],"mappings":"AAgCA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iCAAiC,CAAC;AAC1E,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAGrD,gEAAgE;AAChE,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,CAAC;IACtC,wDAAwD;IACxD,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;IACnC,oDAAoD;IACpD,QAAQ,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,CAAC;IAClC,0CAA0C;IAC1C,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CAC9B;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,KAAK,EAAE,kBAAkB,CAAC;IACnC,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,qDAAqD;IACrD,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,GAAG,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;IACrC,QAAQ,CAAC,GAAG,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;CACtC;AAwLD,sFAAsF;AACtF,wBAAgB,UAAU,CAAC,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,GAAG,MAAM,CAepE"}
+{"version":3,"file":"studies.d.ts","sourceRoot":"","sources":["../src/studies.ts"],"names":[],"mappings":"AAoCA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,iCAAiC,CAAC;AAC1E,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAGrD,gEAAgE;AAChE,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,QAAQ,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,CAAC;IACtC,wDAAwD;IACxD,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;IACnC,oDAAoD;IACpD,QAAQ,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,CAAC;IAClC,0CAA0C;IAC1C,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;CAC9B;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,KAAK,EAAE,kBAAkB,CAAC;IACnC,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC;IACrB,qDAAqD;IACrD,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,GAAG,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;IACrC,QAAQ,CAAC,GAAG,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;CACtC;AA6LD,sFAAsF;AACtF,wBAAgB,UAAU,CAAC,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,GAAG,MAAM,CAepE"}

package/dist/studies.js

@@ -3,8 +3,9 @@
  * `repro/studies.json`, and its index in `repro/README.md` (docs/design/study-registry.md).
  *
  *   new <paper-dir> "<title>" [--kind <kind>]
- *            the next id; `repro/<id>-<slug>/README.md` with the id and title in its frontmatter; the
- *            row, `status: designing`, today's date; the index regenerated
+ *            the next id; `repro/<id>-<slug>/README.md` with the id and title in its frontmatter, and
+ *            `plan.json`, the plan's template; the row, `status: designing`, today's date, its `plan`;
+ *            the index regenerated
  *   index <paper-dir>
  *            the index block of `repro/README.md`, regenerated from the registry
  *
@@ -15,7 +16,7 @@
 import { join, relative, resolve } from "node:path";
 import { callerPath } from "./caller-path.js";
 import { README, REPRO_DIR } from "./domain/repro-layout.js";
-import { DEFAULT_KIND, STUDIES_FILE, STUDY_KINDS, addStudy, indexInSync, isStudyKind, registryText, studyReadme, withIndex, } from "./domain/study-registry.js";
+import { DEFAULT_KIND, PLAN_FILE, STUDIES_FILE, STUDY_KINDS, addStudy, indexInSync, isStudyKind, planTemplate, planText, registryText, studyReadme, withIndex, } from "./domain/study-registry.js";
 import { registryOf } from "./study-registry-rule.js";
 const NEW_USAGE = 'npx paperlint studies new <paper-dir> "<title>" [--kind <kind>]';
 const INDEX_USAGE = "npx paperlint studies index <paper-dir>";
@@ -92,16 +93,18 @@ function newArgs(a) {
         ? { title: a.title, kind }
         : refuse(2, `--kind ${kind} is not a kind of study: one of ${STUDY_KINDS.join(", ")}`);
 }
-/** Write a new study's README.md, the registry, and the index; the lines that say so. */
+/** Write a new study's README.md and plan.json, the registry, and the index; the lines that say so. */
 function writeStudy(p, added, files) {
     const { study, registry } = added;
     const at = (...names) => callerPath(join(p.dir, REPRO_DIR, ...names));
     files.writeAtomic(at(study.folder, README), text(studyReadme(study)));
+    files.writeAtomic(at(study.folder, PLAN_FILE), text(planText(planTemplate())));
     files.writeAtomic(at(STUDIES_FILE), text(registryText(registry)));
     writeIndex(p.dir, registry, files);
     const repro = `${p.shown}/${REPRO_DIR}`;
     return [
         `created ${repro}/${study.folder}/${README}`,
+        `created ${repro}/${study.folder}/${PLAN_FILE}, the study's plan: its fields are there to fill in before the first run`,
         `added ${study.id} to ${repro}/${STUDIES_FILE}: kind ${study.kind}, status ${study.status}, ${study.date}`,
         `wrote the index of ${studiesCount(registry)} in ${repro}/${README}`,
         `Next: write the study's one-sentence question in its row (\`question\`) and in its README.md. When it ends, set \`status\`, \`result\`, \`result_file\` and \`in_paper\` in its row, then run \`npx paperlint studies index ${p.shown}\`.`,

package/dist/studies.js.map

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package/dist/study-registry-rule.d.ts

@@ -8,10 +8,17 @@ export interface StudyRegistryDeps extends FolderLayoutDeps {
 }
 /** The registry of the paper folder `dir`: absent, unreadable with why, or read. */
 export declare function registryOf(dir: string, deps: Pick<StudyRegistryDeps, "files" | "codec">): RegistryState;
-/** Every finding of the paper folder `dir`'s study registry — THE function behind the rule. */
+/** Every finding of the paper folder `dir`'s study registry — THE function behind both rules. */
 export declare function studyFindings(dir: string, deps: StudyRegistryDeps): readonly StudyFinding[];
-/** The rule, reading the folder through `deps`. */
-export declare function studyRegistryRules(deps: StudyRegistryDeps): Readonly<Record<"study-registered", FolderRuleModule>>;
-/** The level it is on at in paperlint's own config, for every paper's `PIPELINE-STATUS.md`. */
-export declare const STUDY_REGISTRY_RULE_LEVELS: Readonly<Record<"repro/study-registered", "error">>;
+/**
+ * The two rules, reading the folder through `deps`: `study-registered`, the registry's errors, and
+ * `study-plan-name`, a warning for a plan still named `prereg.json` — read as the plan, so a paper
+ * that wrote one before `plan.json` existed is not broken, and told the name to move to.
+ */
+export declare function studyRegistryRules(deps: StudyRegistryDeps): Readonly<Record<"study-registered" | "study-plan-name", FolderRuleModule>>;
+/** The levels they are on at in paperlint's own config, for every paper's `PIPELINE-STATUS.md`. */
+export declare const STUDY_REGISTRY_RULE_LEVELS: Readonly<{
+    "repro/study-registered": "error";
+    "repro/study-plan-name": "warn";
+}>;
 //# sourceMappingURL=study-registry-rule.d.ts.map

package/dist/study-registry-rule.d.ts.map

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