paperlint 10.1.1 → 10.3.0

package/dist/domain/study-registry.js

@@ -0,0 +1,593 @@
+/**
+ * THE STUDY REGISTRY — `repro/studies.json`: one row per study, each with a stable id, a plain name and
+ * its status. The design is docs/design/study-registry.md; the rule is `repro/study-registered`
+ * (docs/rules/repro/study-registered.md).
+ *
+ * A paper's `repro/` once reached 79 study folders named `<slug>-YYYY-MM-DD`, and nobody could tell
+ * which was which, which had ended, or which a number in the paper came from. Now every study folder is
+ * `<id>-<slug>` (`P1-S03-baseline`), and its row says what it asks, where it stands and what it found.
+ *
+ * ── JSON, NEVER MARKDOWN ─────────────────────────────────────────────────────────
+ * The registry is data: its text is parsed once, where it enters, against the schema in
+ * `src/adapters/study-registry/` (`StudyRegistryCodec`). The index in `repro/README.md` is OUTPUT: it is
+ * generated from the registry and compared as a string, between two fixed markers. Nothing parses it.
+ *
+ * Pure: the caller lists `repro/`, reads the registry and the README, and says which result files exist.
+ */
+import { isAbsolute, posix, win32 } from "node:path";
+import { STUDIES_FILE, STUDY_SLUG } from "./repro-layout.js";
+/** The registry, at the top of the paper's `repro/`; the layout allows it there. */
+export { STUDIES_FILE };
+export const STUDY_KINDS = [
+    "measurement",
+    "spike",
+    "tooling",
+    "data",
+    "artifact",
+    "salvage",
+];
+export const STUDY_STATUSES = [
+    "designing",
+    "running",
+    "done",
+    "stopped",
+    "superseded",
+    "dropped",
+];
+/** `registry`: listed in the registry only, not in the paper's text. */
+export const IN_PAPER = ["yes", "no", "registry"];
+/** A title is a plain name, not a sentence. */
+export const MAX_TITLE_WORDS = 8;
+/** A paper's prefix: a capital letter, then capitals or digits (`P1`). */
+export const PREFIX_PATTERN = /^[A-Z][A-Z0-9]*$/u;
+/** The kind `paperlint studies new` gives a study when none is named. */
+export const DEFAULT_KIND = "measurement";
+/** The markers around the generated index in `repro/README.md`. Fixed: the rule finds the block by them. */
+export const INDEX_BEGIN = "<!-- studies:begin — generated from studies.json by `paperlint studies index`; do not edit -->";
+export const INDEX_END = "<!-- studies:end -->";
+/** The README written when `repro/` has none. */
+const INDEX_HEADING = "# Reproduction index";
+/** What a measurement is to the paper: the claim it carries, or what that claim is compared with. */
+export const MEASUREMENT_ROLES = ["headline", "baseline"];
+/**
+ * The statuses of a study that has run: its plan was due before the first run. A `designing` study
+ * has not run yet, and a `dropped` one never will.
+ */
+export const RAN_STATUSES = [
+    "running",
+    "done",
+    "stopped",
+    "superseded",
+];
+/** The file `paperlint studies new` writes a study's plan to, beside its README.md. */
+export const PLAN_FILE = "plan.json";
+/** The plan's name before it was a plan: still read as one, and reported by `repro/study-plan-name`. */
+export const LEGACY_PLAN_FILE = "prereg.json";
+/** The top-level fields of a plan: none of them may be a key of `extra`. */
+export const PLAN_FIELDS = [
+    "question",
+    "population",
+    "arms",
+    "primary_outcome",
+    "author_check",
+    "extra",
+];
+/** The texts a plan must fill before the study runs, in the order they are named. */
+export const PLAN_TEXT_FIELDS = [
+    "question",
+    "population.source",
+    "population.draw.method",
+    "primary_outcome",
+];
+/**
+ * The plan `paperlint studies new` writes: every field present, its value to fill. Its draw is of
+ * all the population (a census); a sampled study changes it to `{ "kind": "seeded", "method", "seed" }`.
+ */
+export const planTemplate = () => ({
+    question: "",
+    population: { source: "", draw: { kind: "all", method: "" } },
+    arms: [],
+    primary_outcome: "",
+    author_check: null,
+});
+/** A plan's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
+export const planText = (p) => `${JSON.stringify(p, null, 2)}\n`;
+/** The findings `repro/study-plan-name` reports, a warning; every other is `repro/study-registered`'s. */
+export const PLAN_NAME_PROBLEMS = [
+    "legacy-plan",
+];
+/** The number of an id of `prefix` (`P1-S07` → 7); null for an id of another shape. */
+function idNumber(prefix, id) {
+    const m = new RegExp(`^${prefix}-S(\\d{2,})$`, "u").exec(id);
+    return m === null ? null : Number(m[1]);
+}
+/** The id after the highest one in `r`, at least two digits: `P1-S01` in an empty registry. */
+export function nextStudyId(r) {
+    const numbers = r.studies
+        .map((s) => idNumber(r.prefix, s.id))
+        .filter((n) => n !== null);
+    const next = Math.max(0, ...numbers) + 1;
+    return `${r.prefix}-S${String(next).padStart(2, "0")}`;
+}
+/** The slug of a title: lowercase Latin letters and digits, words joined by single hyphens; "" when none. */
+export const studySlug = (title) => title
+    .normalize("NFKD")
+    .replace(/\p{M}/gu, "")
+    .toLowerCase()
+    .replace(/[^a-z0-9]+/gu, "-")
+    .replace(/^-+|-+$/gu, "");
+/** The number of words in a title. */
+export const titleWords = (title) => title.split(/\s+/u).filter((w) => w !== "").length;
+/**
+ * Whether `path` stays inside the folder it is relative to. A backslash or a Windows absolute path
+ * is refused outright: `posix.normalize` does not resolve `..\\`, while the host's `join` may.
+ */
+const isInside = (path) => {
+    if (path.includes("\\") || isAbsolute(path) || win32.isAbsolute(path))
+        return false;
+    const n = posix.normalize(path);
+    return n !== ".." && !n.startsWith("../");
+};
+/**
+ * The `<folder>/<plan>` of each row whose plan lies inside its folder: the files the judge needs read
+ * (`StudyInput.plans`). A plan outside its folder is reported without being read.
+ */
+export const planKeys = (r) => r.studies.flatMap((s) => s.plan !== undefined && isInside(s.plan) ? [`${s.folder}/${s.plan}`] : []);
+/** Whether the row is the first of the registry with its value of `key`. */
+const isFirst = ({ r, s, i }, key) => r.studies.findIndex((o) => key(o) === key(s)) === i;
+const badId = ({ r, s }) => idNumber(r.prefix, s.id) === null
+    ? { problem: "bad-id", id: s.id, prefix: r.prefix }
+    : null;
+/** Reported once, on the first row that holds the id. */
+const duplicateId = (row) => row.r.studies.filter((o) => o.id === row.s.id).length > 1 &&
+    isFirst(row, (o) => o.id)
+    ? { problem: "duplicate-id", id: row.s.id }
+    : null;
+/** Reported once, on the first row that names the folder. */
+const twoRows = (row) => {
+    const { r, s } = row;
+    const ids = r.studies.filter((o) => o.folder === s.folder).map((o) => o.id);
+    return ids.length > 1 && isFirst(row, (o) => o.folder)
+        ? { problem: "two-rows", folder: s.folder, ids }
+        : null;
+};
+/** A bad id is reported once, as an id: no folder can match it. */
+const folderName = ({ r, s }) => idNumber(r.prefix, s.id) === null ||
+    (s.folder.startsWith(`${s.id}-`) &&
+        STUDY_SLUG.test(s.folder.slice(s.id.length + 1)))
+    ? null
+    : { problem: "folder-name", id: s.id, folder: s.folder };
+const noFolder = ({ s, input }) => input.folders.includes(s.folder)
+    ? null
+    : { problem: "no-folder", id: s.id, folder: s.folder };
+const longTitle = ({ s }) => {
+    const words = titleWords(s.title);
+    return words > MAX_TITLE_WORDS
+        ? { problem: "long-title", id: s.id, words }
+        : null;
+};
+const noResult = ({ s }) => {
+    const missing = [
+        ...(s.result === undefined ? ["result"] : []),
+        ...(s.result_file === undefined ? ["result_file"] : []),
+    ];
+    return s.status === "done" && missing.length > 0
+        ? { problem: "no-result", id: s.id, missing }
+        : null;
+};
+/** A `result_file` on any status must be a file inside the study's folder. */
+const resultFile = ({ s, input }) => {
+    const path = s.result_file;
+    if (path === undefined)
+        return null;
+    if (!isInside(path))
+        return { problem: "result-file", id: s.id, path, why: "outside" };
+    return input.existingResults.has(`${s.folder}/${path}`)
+        ? null
+        : { problem: "result-file", id: s.id, path, why: "missing" };
+};
+const noSuccessor = ({ r, s }) => {
+    const by = s.superseded_by ?? null;
+    return s.status === "superseded" &&
+        (by === null || !r.studies.some((o) => o.id === by))
+        ? { problem: "no-successor", id: s.id, superseded_by: by }
+        : null;
+};
+/** A row's `measurement`, when the registry declares its measurements, names one of them. */
+const unknownMeasurement = ({ r, s }) => r.measurements === undefined ||
+    s.measurement === undefined ||
+    r.measurements.some((m) => m.id === s.measurement)
+    ? null
+    : { problem: "unknown-measurement", id: s.id, measurement: s.measurement };
+/** The state of the plan the row names (absent when outside its folder); null when it names none. */
+const planOf = ({ s, input }) => {
+    if (s.plan === undefined)
+        return null;
+    return isInside(s.plan)
+        ? (input.plans.get(`${s.folder}/${s.plan}`) ?? { kind: "absent" })
+        : { kind: "absent" };
+};
+const hasRun = (s) => RAN_STATUSES.includes(s.status);
+/** The finding for the plan `path` of `s`, in the state its folder holds it; null when it stands. */
+const planFinding = (s, path, state) => {
+    const at = { problem: "bad-plan", id: s.id, path };
+    switch (state.kind) {
+        case "absent":
+            return { ...at, why: "missing" };
+        case "unreadable":
+            return { ...at, why: "unreadable", reasons: state.why };
+        case "draft":
+            return hasRun(s)
+                ? { ...at, why: "unfilled", fields: state.empty, status: s.status }
+                : null;
+        case "ready":
+            return null;
+    }
+};
+/** The plan a row names is a file inside its folder, of the schema, and ready once the study has run. */
+const badPlan = ({ s, input }) => {
+    const path = s.plan;
+    if (path === undefined)
+        return null;
+    if (!isInside(path))
+        return { problem: "bad-plan", id: s.id, path, why: "outside" };
+    return planFinding(s, path, input.plans.get(`${s.folder}/${path}`) ?? { kind: "absent" });
+};
+/** A plan under its old name: read, and named for renaming. */
+const legacyPlan = ({ s }) => s.plan !== undefined && posix.basename(s.plan) === LEGACY_PLAN_FILE
+    ? { problem: "legacy-plan", id: s.id, path: s.plan }
+    : null;
+/**
+ * A study of a headline measurement that has run carries the author's check of its drawn units in
+ * its plan, by the registry's author when it names one. A plan that cannot be read is `badPlan`'s.
+ */
+const authorCheck = (row) => {
+    const { r, s } = row;
+    const m = r.measurements?.find((o) => o.id === s.measurement);
+    if (m?.role !== "headline" || !hasRun(s))
+        return null;
+    const at = {
+        problem: "author-check",
+        id: s.id,
+        measurement: m.id,
+        status: s.status,
+    };
+    const state = planOf(row);
+    if (state === null)
+        return { ...at, why: "no-plan" };
+    const wrong = state.kind === "ready" || state.kind === "draft"
+        ? checkProblem(r, state.plan)
+        : null;
+    return wrong === null ? null : { ...at, ...wrong };
+};
+/** What a read plan's author check lacks: it is not there, or it is not the registry's author's. */
+const checkProblem = (r, plan) => {
+    const check = plan.author_check;
+    if (check === null)
+        return { why: "missing" };
+    return r.author === undefined || check.by === r.author
+        ? null
+        : { why: "not-author", by: check.by, author: r.author };
+};
+/** The checks of a row, in the order their findings are reported. */
+const ROW_CHECKS = [
+    badId,
+    duplicateId,
+    twoRows,
+    folderName,
+    noFolder,
+    longTitle,
+    noResult,
+    resultFile,
+    noSuccessor,
+    unknownMeasurement,
+    badPlan,
+    legacyPlan,
+    authorCheck,
+];
+/** A headline measurement's approval: missing, or not the registry's author's; null when it stands. */
+const headlineApproval = (r, m) => {
+    if (m.role !== "headline")
+        return null;
+    const author = r.author ?? null;
+    if (m.approval === undefined)
+        return {
+            problem: "headline-approval",
+            measurement: m.id,
+            why: "missing",
+            author,
+        };
+    return author === null || m.approval.by === author
+        ? null
+        : {
+            problem: "headline-approval",
+            measurement: m.id,
+            why: "not-author",
+            by: m.approval.by,
+            author,
+        };
+};
+/** What is wrong with one measurement: no study, a requirement not held, a headline not approved. */
+const judgeMeasurement = (r, m) => {
+    const approval = headlineApproval(r, m);
+    return [
+        ...(r.studies.some((s) => s.measurement === m.id)
+            ? []
+            : [{ problem: "empty-measurement", measurement: m.id }]),
+        ...(m.requirements ?? [])
+            .filter((id) => !(r.requirements ?? []).some((q) => q.id === id))
+            .map((requirement) => ({
+            problem: "unknown-requirement",
+            measurement: m.id,
+            requirement,
+        })),
+        ...(approval === null ? [] : [approval]),
+    ];
+};
+/** What is wrong with a row, in a fixed order. */
+const judgeRow = (row) => ROW_CHECKS.map((check) => check(row)).filter((f) => f !== null);
+/** Whether the README's index is the one `r` generates; the finding when not. */
+function judgeIndex(r, readme) {
+    if (readme === null)
+        return { problem: "stale-index", why: "no-readme" };
+    const block = embeddedIndex(readme);
+    if (block === null)
+        return { problem: "stale-index", why: "no-markers" };
+    return indexInSync(readme, r)
+        ? null
+        : { problem: "stale-index", why: "differs" };
+}
+/**
+ * Every defect of a paper's study registry, in a fixed order: the registry itself; the unregistered
+ * folders; each row's; the index. Pure.
+ */
+export function judgeStudies(input) {
+    const state = input.registry;
+    if (state.kind === "absent")
+        return input.folders.length === 0
+            ? []
+            : [{ problem: "no-registry", folders: input.folders }];
+    if (state.kind === "unreadable")
+        return [{ problem: "unreadable", why: state.why }];
+    const r = state.registry;
+    const next = nextStudyId(r);
+    const index = judgeIndex(r, input.readme);
+    return [
+        ...input.folders
+            .filter((f) => !r.studies.some((s) => s.folder === f))
+            .map((folder) => ({
+            problem: "unregistered",
+            folder,
+            next,
+        })),
+        ...r.studies.flatMap((s, i) => judgeRow({ r, s, i, input })),
+        ...(r.measurements ?? []).flatMap((m) => judgeMeasurement(r, m)),
+        ...(index === null ? [] : [index]),
+    ];
+}
+// ── the index ─────────────────────────────────────────────────────────────────────
+/** A cell's text: one line, a backslash and then a pipe escaped, so `a\\|b` stays one cell. */
+const cell = (s) => s.replace(/\r?\n/gu, " ").replace(/\\/gu, "\\\\").replace(/\|/gu, "\\|");
+/** The columns of the index: each one's header, and its cell for a study. */
+const COLUMNS = [
+    { head: "id", of: (s) => s.id },
+    { head: "title", of: (s) => cell(s.title) },
+    { head: "status", of: (s) => s.status },
+    { head: "result", of: (s) => cell(s.result ?? "—") },
+    { head: "in paper", of: (s) => s.in_paper },
+    { head: "folder", of: (s) => `[${s.folder}/](${s.folder}/)` },
+];
+/** The width a cell takes: its code points. */
+const widthOf = (s) => Array.from(s).length;
+/** `t` padded to `width`. */
+const padded = (t, width) => t + " ".repeat(width - widthOf(t));
+/**
+ * The index of `r`: a markdown table, a row per study in registry order, each column padded to its
+ * widest cell (at least 3), the way prettier writes a table — so formatting the README leaves it as
+ * it is.
+ */
+export function studyIndex(r) {
+    const sized = COLUMNS.map((c) => ({
+        ...c,
+        width: Math.max(3, widthOf(c.head), ...r.studies.map((s) => widthOf(c.of(s)))),
+    }));
+    const line = (cells) => `| ${cells.join(" | ")} |`;
+    return [
+        line(sized.map((c) => padded(c.head, c.width))),
+        line(sized.map((c) => "-".repeat(c.width))),
+        ...r.studies.map((s) => line(sized.map((c) => padded(c.of(s), c.width)))),
+    ].join("\n");
+}
+/**
+ * What a markdown table says, whatever its padding: its rows, each cell trimmed, a separator cell as
+ * `---`. The index is judged on this, because the padding belongs to the formatter: prettier sizes a
+ * column by display width, so a wide character pads differently from a code-point count.
+ */
+const cellsOf = (table) => table
+    .trim()
+    .split("\n")
+    .map((line) => line
+    .trim()
+    .replace(/^\||\|$/gu, "")
+    .split(/(?<!\\)\|/u)
+    .map((c) => c.trim().replace(/^:?-{3,}:?$/u, "---"))
+    .join("|"))
+    .join("\n");
+/** Whether `readme` holds the index of `r`, whatever padding a formatter gave its table. */
+export function indexInSync(readme, r) {
+    const block = readme === null ? null : embeddedIndex(readme);
+    return block !== null && cellsOf(block) === cellsOf(studyIndex(r));
+}
+/** The index between its markers, a blank line on each side. */
+export const indexBlock = (r) => `${INDEX_BEGIN}\n\n${studyIndex(r)}\n\n${INDEX_END}`;
+/**
+ * Where `marker` stands alone on a line of `text`, at or after `from`; -1 when it does not. A marker
+ * counts only there, where the generator writes it: prose can mention it and a cell can carry it, but
+ * neither puts it alone on a line.
+ */
+const markerAt = (text, marker, from = 0) => {
+    const literal = marker.replace(/[.*+?^${}()|[\]\\]/gu, "\\$&");
+    const m = new RegExp(`^${literal}$`, "mu").exec(text.slice(from));
+    return m === null ? -1 : from + m.index;
+};
+/** The text between the markers of `readme`; null when it has no begin marker followed by an end one. */
+export function embeddedIndex(readme) {
+    const begin = markerAt(readme, INDEX_BEGIN);
+    const end = begin === -1 ? -1 : markerAt(readme, INDEX_END, begin);
+    return end === -1 ? null : readme.slice(begin + INDEX_BEGIN.length, end);
+}
+/**
+ * `readme` with its index regenerated from `r`: the block replaced in place, appended when the README
+ * has none, a README of its own when there is none.
+ */
+export function withIndex(readme, r) {
+    if (readme === null)
+        return `${INDEX_HEADING}\n\n${indexBlock(r)}\n`;
+    const block = embeddedIndex(readme);
+    if (block === null)
+        return `${readme.trimEnd()}\n\n${indexBlock(r)}\n`;
+    const begin = markerAt(readme, INDEX_BEGIN);
+    const after = begin + INDEX_BEGIN.length + block.length + INDEX_END.length;
+    return `${readme.slice(0, begin)}${indexBlock(r)}${readme.slice(after)}`;
+}
+/** The registry's text as `paperlint studies new` writes it: JSON, two-space indented, a final newline. */
+export const registryText = (r) => `${JSON.stringify(r, null, 2)}\n`;
+// ── the messages ──────────────────────────────────────────────────────────────────
+const REGISTRY = "`repro/studies.json`";
+const NEW_STUDY = '`npx paperlint studies new <paper-dir> "<title>"`';
+const RUN_INDEX = "What to do: run `npx paperlint studies index <paper-dir>`; the block is generated, never edited by hand.";
+const RENAME = "give each other row the next free id and rename its folder to match";
+const tick = (s) => `\`${s}\``;
+/** `a`, `b` and `c`: names in backticks, the last joined by "and". */
+const listed = (names) => {
+    const t = names.map(tick);
+    return [t.slice(0, -1).join(", "), ...t.slice(-1)]
+        .filter((part) => part !== "")
+        .join(" and ");
+};
+const STALE_HEAD = {
+    differs: `The index in \`repro/README.md\` (between the \`studies:begin\` and \`studies:end\` markers) is not the one ${REGISTRY} generates.`,
+    "no-markers": "`repro/README.md` has no index of the studies (the `studies:begin` and `studies:end` markers).",
+    "no-readme": "`repro/README.md`, the index of the studies, does not exist.",
+};
+/** The first part of each finding's text: what is wrong, and what to do. */
+const HEADS = {
+    "no-registry": (f) => `\`repro/\` holds study folders (${f.folders.map((d) => tick(`${d}/`)).join(", ")}) but no ${REGISTRY}, the registry that gives every study an id, a plain name and a status. What to do: write ${REGISTRY} with the paper's prefix — \`{ "prefix": "P1", "studies": [] }\` — then give each folder its row and rename it to \`<id>-<slug>\`; a new study is created with ${NEW_STUDY}.`,
+    unreadable: (f) => `${REGISTRY} is not a study registry: ${f.why}. Its shape is on the rule's page.`,
+    unregistered: (f) => `\`repro/${f.folder}/\` has no row in ${REGISTRY}, and every study folder has exactly one. What to do: add its row with the next free id, ${tick(f.next)}, and rename the folder to \`${f.next}-<slug>\`; a new study is created with ${NEW_STUDY}, which does both.`,
+    "no-folder": (f) => `${REGISTRY}: the row ${tick(f.id)} names the folder \`repro/${f.folder}/\`, which does not exist. What to do: rename the study's folder to it, or correct the row's \`folder\`.`,
+    "two-rows": (f) => `${REGISTRY}: the rows ${f.ids.map(tick).join(", ")} all name the folder \`repro/${f.folder}/\`, and a study folder has exactly one row. What to do: keep one row for it.`,
+    "bad-id": (f) => `${REGISTRY}: the id ${tick(f.id)} is not \`${f.prefix}-S\` followed by two or more digits (\`${f.prefix}-S01\`). What to do: give the row the next free id and rename its folder to match.`,
+    "duplicate-id": (f) => `${REGISTRY}: the id ${tick(f.id)} is on more than one row, and an id names one study. What to do: ${RENAME}.`,
+    "folder-name": (f) => `${REGISTRY}: the row ${tick(f.id)} names the folder ${tick(f.folder)}, which is not \`${f.id}-<slug>\` — the id, then lowercase letters and digits in words joined by hyphens. What to do: rename the folder and the row's \`folder\` together.`,
+    "long-title": (f) => `${REGISTRY}: the title of ${tick(f.id)} has ${String(f.words)} words; a title is a plain name of at most ${String(MAX_TITLE_WORDS)}. What to do: shorten it, and put the detail in \`question\`.`,
+    "no-result": (f) => `${REGISTRY}: ${tick(f.id)} is \`done\` without ${f.missing.map(tick).join(" and ")}. What to do: write the one-line result and the file it is read from (\`result\`, \`result_file\`), or set the status it really has.`,
+    "result-file": (f) => `${REGISTRY}: the \`result_file\` of ${tick(f.id)}, ${tick(f.path)}, ${f.why === "missing" ? "is not a file in its folder" : "is outside its folder"}. What to do: name a file that exists, relative to the study's folder.`,
+    "no-successor": (f) => `${REGISTRY}: ${tick(f.id)} is \`superseded\` ${f.superseded_by === null ? "without `superseded_by`" : `by ${tick(f.superseded_by)}, which is no study in the registry`}. What to do: name the id of the study that replaced it.`,
+    "stale-index": (f) => `${STALE_HEAD[f.why]} ${RUN_INDEX}`,
+    "unknown-measurement": (f) => `${REGISTRY}: the row ${tick(f.id)} names the measurement ${tick(f.measurement)}, which is not in \`measurements\`. What to do: add the measurement to \`measurements\`, or correct the row's \`measurement\`.`,
+    "empty-measurement": (f) => `${REGISTRY}: no row names the measurement ${tick(f.measurement)}, and a measurement is made of studies. What to do: set \`"measurement": "${f.measurement}"\` on the rows of its studies, or remove the measurement.`,
+    "unknown-requirement": (f) => `${REGISTRY}: the measurement ${tick(f.measurement)} must meet the requirement ${tick(f.requirement)}, which is not in \`requirements\`. What to do: add the requirement — the author's words verbatim in \`text\`, with its \`date\` and \`source\` — or correct the measurement's \`requirements\`.`,
+    "headline-approval": (f) => f.why === "missing"
+        ? `${REGISTRY}: the measurement ${tick(f.measurement)} is a \`headline\` one and has no \`approval\`. What to do: record ${f.author === null ? "the author's approval" : `the approval of ${f.author}, the registry's \`author\``} — \`by\`, \`date\`, and their words in \`quote\` — or make it a \`baseline\`.`
+        : `${REGISTRY}: the measurement ${tick(f.measurement)} is a \`headline\` one, and its \`approval\` is by ${f.by}, not by the registry's \`author\`, ${f.author}. What to do: only the author approves a headline measurement; record their own approval.`,
+    "bad-plan": (f) => {
+        const of = `the \`plan\` of ${tick(f.id)}, ${tick(f.path)},`;
+        const plan = `The plan of ${tick(f.id)}, ${tick(f.path)} in its folder,`;
+        switch (f.why) {
+            case "missing":
+                return `${REGISTRY}: ${of} is not a file in its folder. What to do: write the plan there (its fields are on the rule's page), or correct the row's \`plan\`.`;
+            case "outside":
+                return `${REGISTRY}: ${of} is outside its folder. What to do: keep the plan in the study's folder, as \`${PLAN_FILE}\`, and name it relative to the folder.`;
+            case "unreadable":
+                return `${plan} is not a study plan: ${f.reasons}. What to do: give it the fields on the rule's page — \`question\`, \`population\`, \`arms\`, \`primary_outcome\`.`;
+            case "unfilled":
+                return `${plan} leaves ${listed(f.fields)} empty, and the study is ${tick(f.status)}: a plan is written before the runs. What to do: fill them in, or set the study back to \`designing\`.`;
+        }
+    },
+    "author-check": (f) => {
+        const head = `${tick(f.id)} is ${tick(f.status)} in the headline measurement ${tick(f.measurement)}, and`;
+        switch (f.why) {
+            case "no-plan":
+                return `${head} its row names no plan to hold the author's check of the drawn units. What to do: write its plan (\`${PLAN_FILE}\` in its folder, named in the row's \`plan\`) with \`author_check\` — \`by\`, \`date\`, and the author's words in \`quote\`.`;
+            case "missing":
+                return `${head} its plan has no \`author_check\`. What to do: show the author the drawn units, then record their answer in the plan's \`author_check\` — \`by\`, \`date\`, and their words in \`quote\`.`;
+            case "not-author":
+                return `${head} the \`author_check\` in its plan is by ${f.by}, not by the registry's \`author\`, ${f.author}. What to do: only the author approves the drawn units of a headline measurement; record their own answer.`;
+        }
+    },
+    "legacy-plan": (f) => `The plan of ${tick(f.id)} is ${tick(f.path)}, its old name; it is read as the plan. What to do: rename it to \`${PLAN_FILE}\` in the study's folder (\`git mv\`) and set the row's \`plan\` to \`${PLAN_FILE}\`.`,
+};
+/** The head of finding `f` of problem `p`: the lookup, typed by the problem. */
+const headOf = (p, f) => HEADS[p](f);
+/** The rule that reports finding `f`. */
+const ruleOf = (f) => PLAN_NAME_PROBLEMS.includes(f.problem)
+    ? "repro/study-plan-name"
+    : "repro/study-registered";
+/** The one text a finding is reported with: what is wrong, what to do, and the rule's page. */
+export const studyMessage = (f) => `${headOf(f.problem, f)}\nRule ${ruleOf(f)}: https://github.com/zernie/paperlint/blob/main/docs/rules/${ruleOf(f)}.md`;
+// ── a new study ───────────────────────────────────────────────────────────────────
+/** Whether `s` names a kind of study. */
+export const isStudyKind = (s) => STUDY_KINDS.some((k) => k === s);
+/** Why `title` cannot name a study; null when it can. */
+function titleProblem(title) {
+    const words = titleWords(title);
+    if (words === 0)
+        return "the title is empty";
+    if (words > MAX_TITLE_WORDS)
+        return `the title has ${String(words)} words; a title is a plain name of at most ${String(MAX_TITLE_WORDS)} — the detail goes in the row's \`question\``;
+    return studySlug(title) === ""
+        ? "the title has no Latin letter or digit to name the folder by; give it one (an English title, or a word such as the method's name)"
+        : null;
+}
+/**
+ * `r` with a new study appended: the next id, the folder `<id>-<slug>`, `status: designing`,
+ * `in_paper: no`, an empty question and its plan, `plan.json`; or why the title cannot make one.
+ */
+export function addStudy(r, n) {
+    const title = n.title.trim().replace(/\s+/gu, " ");
+    const why = titleProblem(title);
+    if (why !== null)
+        return { ok: false, why };
+    const id = nextStudyId(r);
+    const study = {
+        id,
+        folder: `${id}-${studySlug(title)}`,
+        title,
+        question: "",
+        kind: n.kind,
+        status: "designing",
+        date: n.date,
+        in_paper: "no",
+        plan: PLAN_FILE,
+    };
+    return {
+        ok: true,
+        registry: { ...r, studies: [...r.studies, study] },
+        study,
+    };
+}
+/** The `README.md` a new study's folder starts with: its id and title in frontmatter, then the sections. */
+export const studyReadme = (s) => [
+    "---",
+    `id: ${s.id}`,
+    `title: ${JSON.stringify(s.title)}`,
+    "---",
+    "",
+    `# ${s.id} — ${s.title}`,
+    "",
+    `Its row in \`../${STUDIES_FILE}\` holds its status. When the study ends, set \`status\`, \`result\`,`,
+    "`result_file` and `in_paper` there, then run `npx paperlint studies index <paper-dir>`.",
+    "",
+    `Its plan is \`${PLAN_FILE}\`: what it measures, the population and the draw, the arms and the primary`,
+    "outcome, filled in before the first run; the author's check of the drawn units goes in its",
+    "`author_check`.",
+    "",
+    "## Question",
+    "",
+    "## How to run",
+    "",
+    "## Result",
+    "",
+].join("\n");
+//# sourceMappingURL=study-registry.js.map

package/dist/domain/study-registry.js.map

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