paper-search-cli 0.3.1 → 0.3.2

package/dist/registry/platformMetadata.js

@@ -0,0 +1,321 @@
+export const PLATFORM_METADATA = [
+    {
+        id: 'crossref',
+        displayName: 'Crossref',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'year', 'author', 'sortBy', 'sortOrder'],
+        schemaKind: 'crossref',
+        supportsDoiLookup: true,
+        capabilityGroups: ['metadata_search']
+    },
+    {
+        id: 'openalex',
+        displayName: 'OpenAlex',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'year'],
+        schemaKind: 'openalex',
+        supportsDoiLookup: true,
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'pubmed',
+        displayName: 'PubMed',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        optionalConfigKeys: [['PUBMED_API_KEY'], ['NCBI_EMAIL'], ['NCBI_TOOL']],
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'sortBy'],
+        schemaKind: 'pubmed',
+        supportsDoiLookup: true,
+        capabilityGroups: ['metadata_search']
+    },
+    {
+        id: 'pmc',
+        aliases: ['pubmed_central'],
+        displayName: 'PubMed Central',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'year'],
+        schemaKind: 'pmc-style',
+        supportsDoiLookup: true,
+        isRepository: true,
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'europepmc',
+        aliases: ['europe_pmc'],
+        displayName: 'Europe PMC',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'year'],
+        schemaKind: 'pmc-style',
+        supportsDoiLookup: true,
+        isRepository: true,
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'arxiv',
+        displayName: 'arXiv',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'year', 'author', 'category', 'sortBy', 'sortOrder'],
+        schemaKind: 'arxiv',
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'biorxiv',
+        displayName: 'bioRxiv',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'days', 'category'],
+        schemaKind: 'biorxiv',
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'medrxiv',
+        displayName: 'medRxiv',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'days', 'category'],
+        schemaKind: 'medrxiv',
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'semantic',
+        displayName: 'Semantic Scholar',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        optionalConfigKeys: [['SEMANTIC_SCHOLAR_API_KEY']],
+        supportedOptions: ['maxResults', 'year', 'fieldsOfStudy', 'sortBy'],
+        schemaKind: 'semantic-scholar',
+        supportsDoiLookup: true,
+        capabilityGroups: ['metadata_search', 'citation_expansion', 'body_snippet_search', 'pdf_discovery']
+    },
+    {
+        id: 'iacr',
+        displayName: 'IACR ePrint',
+        sourceKind: 'html',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'fetchDetails'],
+        schemaKind: 'iacr',
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'core',
+        displayName: 'CORE',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        optionalConfigKeys: [['CORE_API_KEY']],
+        supportedOptions: ['maxResults', 'year'],
+        schemaKind: 'core',
+        isRepository: true,
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'openaire',
+        displayName: 'OpenAIRE',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        optionalConfigKeys: [['OPENAIRE_API_KEY']],
+        supportedOptions: ['maxResults', 'year'],
+        schemaKind: 'pmc-style',
+        isRepository: true,
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'googlescholar',
+        aliases: ['scholar', 'google_scholar'],
+        displayName: 'Google Scholar',
+        sourceKind: 'html',
+        defaultInAll: true,
+        supportedOptions: ['maxResults', 'year', 'author'],
+        schemaKind: 'google-scholar',
+        capabilityGroups: ['metadata_search']
+    },
+    {
+        id: 'webofscience',
+        aliases: ['wos'],
+        displayName: 'Web of Science',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        configKeys: [['WOS_API_KEY']],
+        optionalConfigKeys: [['WOS_API_VERSION']],
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'sortBy', 'sortOrder'],
+        schemaKind: 'webofscience',
+        capabilityGroups: ['metadata_search', 'entitled_access']
+    },
+    {
+        id: 'sciencedirect',
+        displayName: 'ScienceDirect',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        configKeys: [['ELSEVIER_API_KEY']],
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'openAccess'],
+        schemaKind: 'sciencedirect',
+        capabilityGroups: ['metadata_search', 'pdf_discovery', 'entitled_access']
+    },
+    {
+        id: 'springer',
+        aliases: ['springerlink'],
+        displayName: 'Springer Nature',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        configKeys: [['SPRINGER_API_KEY']],
+        optionalConfigKeys: [['SPRINGER_OPENACCESS_API_KEY']],
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'openAccess', 'subject', 'type'],
+        schemaKind: 'springer',
+        capabilityGroups: ['metadata_search', 'pdf_discovery', 'entitled_access']
+    },
+    {
+        id: 'scopus',
+        displayName: 'Scopus',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        configKeys: [['ELSEVIER_API_KEY']],
+        optionalConfigKeys: [['SCOPUS_SEARCH_API_KEY']],
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'affiliation', 'subject', 'openAccess', 'documentType'],
+        schemaKind: 'scopus',
+        capabilityGroups: ['metadata_search', 'pdf_discovery', 'entitled_access']
+    },
+    {
+        id: 'scihub',
+        displayName: 'Sci-Hub',
+        sourceKind: 'html',
+        defaultInAll: true,
+        supportedOptions: ['maxResults'],
+        schemaKind: 'scihub',
+        capabilityGroups: ['pdf_discovery']
+    },
+    {
+        id: 'unpaywall',
+        displayName: 'Unpaywall',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        configKeys: [['PAPER_SEARCH_UNPAYWALL_EMAIL', 'UNPAYWALL_EMAIL']],
+        supportedOptions: ['maxResults'],
+        schemaKind: 'unpaywall',
+        isRepository: true,
+        capabilityGroups: ['metadata_search', 'pdf_discovery']
+    },
+    {
+        id: 'dblp',
+        displayName: 'DBLP',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        directTool: true,
+        toolName: 'search_dblp',
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'sortBy', 'sortOrder'],
+        schemaKind: 'generic',
+        capabilityGroups: ['metadata_search'],
+        description: 'Search DBLP computer-science bibliography using the official public search API'
+    },
+    {
+        id: 'ieee',
+        displayName: 'IEEE Xplore',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        directTool: true,
+        toolName: 'search_ieee',
+        configKeys: [['IEEE_API_KEY']],
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'sortBy', 'sortOrder', 'articleTitle', 'startRecord'],
+        schemaKind: 'generic',
+        capabilityGroups: ['metadata_search', 'entitled_access'],
+        description: 'Search IEEE Xplore metadata using the official API. Requires IEEE_API_KEY.'
+    },
+    {
+        id: 'acm',
+        displayName: 'ACM Digital Library',
+        sourceKind: 'metadata-proxy',
+        defaultInAll: true,
+        directTool: true,
+        toolName: 'search_acm',
+        supportedOptions: ['maxResults', 'year', 'author', 'sortBy', 'sortOrder'],
+        schemaKind: 'generic',
+        capabilityGroups: ['metadata_search'],
+        description: 'Search ACM metadata through Crossref/OpenAlex-style metadata, constrained to ACM DOI records'
+    },
+    {
+        id: 'usenix',
+        displayName: 'USENIX',
+        sourceKind: 'metadata-proxy',
+        defaultInAll: true,
+        directTool: true,
+        toolName: 'search_usenix',
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'sortBy', 'sortOrder'],
+        schemaKind: 'generic',
+        capabilityGroups: ['metadata_search'],
+        description: 'Search USENIX-related paper metadata through DBLP-backed discovery'
+    },
+    {
+        id: 'openreview',
+        displayName: 'OpenReview',
+        sourceKind: 'official-api',
+        defaultInAll: true,
+        directTool: true,
+        toolName: 'search_openreview',
+        supportedOptions: ['maxResults', 'year', 'author', 'journal', 'venue'],
+        schemaKind: 'generic',
+        capabilityGroups: ['metadata_search'],
+        description: 'Search public OpenReview notes using OpenReview APIs'
+    }
+];
+export const SEARCH_PLATFORM_IDS = PLATFORM_METADATA.map(platform => platform.id);
+export const SEARCH_PLATFORM_VALUES = PLATFORM_METADATA.flatMap(platform => [
+    platform.id,
+    ...(platform.aliases || [])
+]);
+export const DEFAULT_ALL_SOURCES = PLATFORM_METADATA
+    .filter(platform => platform.defaultInAll)
+    .map(platform => platform.id);
+const ALIAS_TO_CANONICAL = new Map();
+const METADATA_BY_ID = new Map();
+const GENERIC_TOOL_ALIASES = new Map([
+    ['search_springerlink', 'springerlink']
+]);
+for (const platform of PLATFORM_METADATA) {
+    METADATA_BY_ID.set(platform.id, platform);
+    for (const alias of platform.aliases || []) {
+        ALIAS_TO_CANONICAL.set(alias, platform.id);
+    }
+}
+export function resolvePlatformId(platform) {
+    const normalized = platform.trim().toLowerCase();
+    return ALIAS_TO_CANONICAL.get(normalized) || normalized;
+}
+export function isPlatformAlias(platform) {
+    return ALIAS_TO_CANONICAL.has(platform.trim().toLowerCase());
+}
+export function isKnownSearchPlatform(platform) {
+    const canonical = resolvePlatformId(platform);
+    return METADATA_BY_ID.has(canonical);
+}
+export function getPlatformMetadata(platform) {
+    return METADATA_BY_ID.get(resolvePlatformId(platform));
+}
+export function getDefaultAllSources() {
+    return [...DEFAULT_ALL_SOURCES];
+}
+export function getAliasMap() {
+    return Object.fromEntries(ALIAS_TO_CANONICAL.entries());
+}
+export function getGenericSearchToolPlatform(toolName) {
+    const aliasPlatform = GENERIC_TOOL_ALIASES.get(toolName);
+    if (aliasPlatform)
+        return aliasPlatform;
+    const platform = getGenericPlatformToolDescriptors().find(item => item.toolName === toolName);
+    return platform?.id;
+}
+export function getGenericSearchToolNames() {
+    return [
+        ...getGenericPlatformToolDescriptors().map(item => item.toolName),
+        ...GENERIC_TOOL_ALIASES.keys()
+    ];
+}
+export function getPlatformToolDescriptors() {
+    return PLATFORM_METADATA.filter(platform => platform.directTool && platform.toolName);
+}
+export function getGenericPlatformToolDescriptors() {
+    return getPlatformToolDescriptors().filter(platform => platform.schemaKind === 'generic');
+}
+//# sourceMappingURL=platformMetadata.js.map

package/dist/registry/platformMetadata.js.map

@@ -0,0 +1 @@
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package/dist/services/CitationService.d.ts

@@ -1,66 +1,3 @@
-export interface CitationData {
-    paperId: string;
-    title: string;
-    citationCount: number;
-    referenceCount: number;
-    influentialCitationCount?: number;
-    year?: number;
-    authors?: Array<{
-        name: string;
-        authorId?: string;
-    }>;
-    venue?: string;
-    doi?: string;
-    url?: string;
-}
-export interface BatchCitationRequest {
-    paperId?: string;
-    doi?: string;
-    arxivId?: string;
-    title?: string;
-}
-export declare class CitationService {
-    private client;
-    private cache;
-    private rateLimiter;
-    private apiKey?;
-    constructor(apiKey?: string);
-    /**
-     * Get citation data for a single paper by ID
-     */
-    getCitationData(paperId: string, forceRefresh?: boolean): Promise<CitationData | null>;
-    /**
-     * Get citation data by DOI
-     */
-    getCitationDataByDoi(doi: string, forceRefresh?: boolean): Promise<CitationData | null>;
-    /**
-     * Get citation data by arXiv ID
-     */
-    getCitationDataByArxiv(arxivId: string, forceRefresh?: boolean): Promise<CitationData | null>;
-    /**
-     * Batch lookup citations for multiple papers
-     */
-    batchLookup(requests: BatchCitationRequest[]): Promise<Map<string, CitationData | null>>;
-    /**
-     * Get references for a paper
-     */
-    getReferences(paperId: string, limit?: number): Promise<CitationData[]>;
-    /**
-     * Get citations for a paper
-     */
-    getCitations(paperId: string, limit?: number): Promise<CitationData[]>;
-    /**
-     * Parse Semantic Scholar response to CitationData
-     */
-    private parseCitationData;
-    /**
-     * Get cache statistics
-     */
-    getCacheStats(): import("../utils/RequestCache.js").CacheStats;
-    /**
-     * Clear cache
-     */
-    clearCache(): void;
-}
-export default CitationService;
+export { CitationService, default } from '../capabilities/citation-expansion/CitationService.js';
+export type { BatchCitationRequest, CitationData } from '../capabilities/citation-expansion/types.js';
 //# sourceMappingURL=CitationService.d.ts.map

package/dist/services/CitationService.d.ts.map

@@ -1 +1 @@
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package/dist/services/CitationService.js

@@ -1,243 +1,2 @@
-import axios from 'axios';
-import { RequestCache } from '../utils/RequestCache.js';
-import { RateLimiter } from '../utils/RateLimiter.js';
-import { ErrorHandler } from '../utils/ErrorHandler.js';
-import { TIMEOUTS, USER_AGENT } from '../config/constants.js';
-import { logDebug, logWarn } from '../utils/Logger.js';
-export class CitationService {
-    client;
-    cache;
-    rateLimiter;
-    apiKey;
-    constructor(apiKey) {
-        this.apiKey = apiKey || process.env.SEMANTIC_SCHOLAR_API_KEY;
-        this.client = axios.create({
-            baseURL: 'https://api.semanticscholar.org/graph/v1',
-            timeout: TIMEOUTS.DEFAULT,
-            headers: {
-                'Accept': 'application/json',
-                'User-Agent': USER_AGENT,
-                ...(this.apiKey ? { 'x-api-key': this.apiKey } : {})
-            }
-        });
-        // Semantic Scholar rate limits: 100 req/5min (free), 1000 req/5min (paid)
-        const requestsPerMinute = this.apiKey ? 180 : 18;
-        this.rateLimiter = new RateLimiter({
-            requestsPerSecond: requestsPerMinute / 60,
-            burstCapacity: Math.max(3, Math.floor(requestsPerMinute / 20))
-        });
-        this.cache = new RequestCache({
-            maxSize: 500,
-            ttlMs: 86400000 // 24 hours
-        });
-    }
-    /**
-     * Get citation data for a single paper by ID
-     */
-    async getCitationData(paperId, forceRefresh = false) {
-        try {
-            // Check cache first
-            if (!forceRefresh) {
-                const cacheKey = this.cache.generateKey('citation', paperId, {});
-                const cached = this.cache.get(cacheKey);
-                if (cached) {
-                    return cached;
-                }
-            }
-            await this.rateLimiter.waitForPermission();
-            const fields = [
-                'paperId',
-                'title',
-                'citationCount',
-                'referenceCount',
-                'influentialCitationCount',
-                'year',
-                'authors',
-                'venue',
-                'externalIds',
-                'url'
-            ].join(',');
-            const response = await ErrorHandler.retryWithBackoff(() => this.client.get(`/paper/${paperId}`, {
-                params: { fields }
-            }), { context: 'Semantic Scholar citation lookup' });
-            if (response.status !== 200 || !response.data) {
-                return null;
-            }
-            const data = this.parseCitationData(response.data);
-            // Cache the result
-            const cacheKey = this.cache.generateKey('citation', paperId, {});
-            this.cache.set(cacheKey, data);
-            return data;
-        }
-        catch (error) {
-            logWarn(`Error fetching citation data for ${paperId}:`, error.message);
-            return null;
-        }
-    }
-    /**
-     * Get citation data by DOI
-     */
-    async getCitationDataByDoi(doi, forceRefresh = false) {
-        try {
-            const paperId = `DOI:${doi}`;
-            return await this.getCitationData(paperId, forceRefresh);
-        }
-        catch (error) {
-            logWarn(`Error fetching citation data by DOI ${doi}:`, error.message);
-            return null;
-        }
-    }
-    /**
-     * Get citation data by arXiv ID
-     */
-    async getCitationDataByArxiv(arxivId, forceRefresh = false) {
-        try {
-            const paperId = `ARXIV:${arxivId}`;
-            return await this.getCitationData(paperId, forceRefresh);
-        }
-        catch (error) {
-            logWarn(`Error fetching citation data by arXiv ID ${arxivId}:`, error.message);
-            return null;
-        }
-    }
-    /**
-     * Batch lookup citations for multiple papers
-     */
-    async batchLookup(requests) {
-        const results = new Map();
-        for (const request of requests) {
-            let paperId = null;
-            let key;
-            if (request.paperId) {
-                paperId = request.paperId;
-                key = request.paperId;
-            }
-            else if (request.doi) {
-                paperId = `DOI:${request.doi}`;
-                key = request.doi;
-            }
-            else if (request.arxivId) {
-                paperId = `ARXIV:${request.arxivId}`;
-                key = request.arxivId;
-            }
-            else if (request.title) {
-                key = request.title;
-                // Search by title (not implemented in this version)
-                results.set(key, null);
-                continue;
-            }
-            else {
-                continue;
-            }
-            try {
-                const data = await this.getCitationData(paperId);
-                results.set(key, data);
-            }
-            catch (error) {
-                logDebug(`Error in batch lookup for ${key}:`, error);
-                results.set(key, null);
-            }
-        }
-        return results;
-    }
-    /**
-     * Get references for a paper
-     */
-    async getReferences(paperId, limit = 100) {
-        try {
-            await this.rateLimiter.waitForPermission();
-            const fields = [
-                'paperId',
-                'title',
-                'citationCount',
-                'referenceCount',
-                'year',
-                'authors',
-                'venue',
-                'externalIds',
-                'url'
-            ].join(',');
-            const response = await ErrorHandler.retryWithBackoff(() => this.client.get(`/paper/${paperId}/references`, {
-                params: { fields, limit }
-            }), { context: 'Semantic Scholar references lookup' });
-            if (response.status !== 200 || !response.data?.data) {
-                return [];
-            }
-            return response.data.data
-                .map((item) => item.citedPaper)
-                .filter((paper) => paper)
-                .map((paper) => this.parseCitationData(paper));
-        }
-        catch (error) {
-            logWarn(`Error fetching references for ${paperId}:`, error.message);
-            return [];
-        }
-    }
-    /**
-     * Get citations for a paper
-     */
-    async getCitations(paperId, limit = 100) {
-        try {
-            await this.rateLimiter.waitForPermission();
-            const fields = [
-                'paperId',
-                'title',
-                'citationCount',
-                'referenceCount',
-                'year',
-                'authors',
-                'venue',
-                'externalIds',
-                'url'
-            ].join(',');
-            const response = await ErrorHandler.retryWithBackoff(() => this.client.get(`/paper/${paperId}/citations`, {
-                params: { fields, limit }
-            }), { context: 'Semantic Scholar citations lookup' });
-            if (response.status !== 200 || !response.data?.data) {
-                return [];
-            }
-            return response.data.data
-                .map((item) => item.citingPaper)
-                .filter((paper) => paper)
-                .map((paper) => this.parseCitationData(paper));
-        }
-        catch (error) {
-            logWarn(`Error fetching citations for ${paperId}:`, error.message);
-            return [];
-        }
-    }
-    /**
-     * Parse Semantic Scholar response to CitationData
-     */
-    parseCitationData(data) {
-        return {
-            paperId: data.paperId,
-            title: data.title,
-            citationCount: data.citationCount || 0,
-            referenceCount: data.referenceCount || 0,
-            influentialCitationCount: data.influentialCitationCount,
-            year: data.year,
-            authors: data.authors?.map((author) => ({
-                name: author.name,
-                authorId: author.authorId
-            })),
-            venue: data.venue,
-            doi: data.externalIds?.DOI,
-            url: data.url
-        };
-    }
-    /**
-     * Get cache statistics
-     */
-    getCacheStats() {
-        return this.cache.getStats();
-    }
-    /**
-     * Clear cache
-     */
-    clearCache() {
-        this.cache.clear();
-    }
-}
-export default CitationService;
+export { CitationService, default } from '../capabilities/citation-expansion/CitationService.js';
 //# sourceMappingURL=CitationService.js.map

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