paper-manager 0.4.2 → 0.6.0

package/dist/extractor/pdf.test.js

@@ -0,0 +1,106 @@
+import * as fs from "node:fs";
+import * as os from "node:os";
+import * as path from "node:path";
+import { beforeEach, describe, expect, it } from "vitest";
+import { extractPdfMetadata } from "./pdf.js";
+// ─── Helpers ─────────────────────────────────────────────────
+function buildMinimalPdf(info) {
+    const infoEntries = Object.entries(info)
+        .map(([k, v]) => `/${k} (${v})`)
+        .join(" ");
+    const objects = [
+        "1 0 obj\n<< /Type /Catalog /Pages 2 0 R >>\nendobj",
+        "2 0 obj\n<< /Type /Pages /Kids [3 0 R] /Count 1 >>\nendobj",
+        "3 0 obj\n<< /Type /Page /Parent 2 0 R /MediaBox [0 0 612 792] >>\nendobj",
+        `4 0 obj\n<< ${infoEntries} >>\nendobj`,
+    ];
+    let pdf = "%PDF-1.4\n";
+    const offsets = [];
+    for (const obj of objects) {
+        offsets.push(pdf.length);
+        pdf += obj + "\n";
+    }
+    const xrefOffset = pdf.length;
+    pdf += "xref\n0 5\n0000000000 65535 f \n";
+    for (const off of offsets) {
+        pdf += String(off).padStart(10, "0") + " 00000 n \n";
+    }
+    pdf += `trailer\n<< /Size 5 /Root 1 0 R /Info 4 0 R >>\nstartxref\n${String(xrefOffset)}\n%%EOF`;
+    return pdf;
+}
+let tmpDir;
+beforeEach(() => {
+    tmpDir = fs.mkdtempSync(path.join(os.tmpdir(), "pdf-test-"));
+});
+function writePdf(name, info) {
+    const pdfPath = path.join(tmpDir, name);
+    fs.writeFileSync(pdfPath, buildMinimalPdf(info));
+    return pdfPath;
+}
+// ─── extractPdfMetadata ──────────────────────────────────────
+describe("extractPdfMetadata", () => {
+    it("extracts title, author, subject, and keywords", async () => {
+        const pdfPath = writePdf("full.pdf", {
+            Title: "Attention Is All You Need",
+            Author: "Vaswani, Ashish",
+            Subject: "A new network architecture based on attention.",
+            Keywords: "transformer, attention, deep learning",
+        });
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.title).toBe("Attention Is All You Need");
+        expect(meta.author).toBe("Vaswani, Ashish");
+        expect(meta.subject).toBe("A new network architecture based on attention.");
+        expect(meta.keywords).toEqual(["transformer", "attention", "deep learning"]);
+    });
+    it("extracts creator field", async () => {
+        const pdfPath = writePdf("creator.pdf", {
+            Creator: "LaTeX with hyperref",
+        });
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.creator).toBe("LaTeX with hyperref");
+    });
+    it("parses CreationDate and ModDate", async () => {
+        const pdfPath = writePdf("dates.pdf", {
+            CreationDate: "D:20231215120000Z",
+            ModDate: "D:20240101",
+        });
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.creationDate).toBeInstanceOf(Date);
+        expect(meta.creationDate.getUTCFullYear()).toBe(2023);
+        expect(meta.creationDate.getUTCMonth()).toBe(11); // December = 11
+        expect(meta.creationDate.getUTCDate()).toBe(15);
+        expect(meta.modDate).toBeInstanceOf(Date);
+        expect(meta.modDate.getUTCFullYear()).toBe(2024);
+    });
+    it("returns null for invalid dates", async () => {
+        const pdfPath = writePdf("baddate.pdf", {
+            CreationDate: "not-a-date",
+        });
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.creationDate).toBeNull();
+    });
+    it("returns null fields and empty keywords when PDF has no metadata", async () => {
+        const pdfPath = writePdf("empty.pdf", {});
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.title).toBeNull();
+        expect(meta.author).toBeNull();
+        expect(meta.subject).toBeNull();
+        expect(meta.creator).toBeNull();
+        expect(meta.doi).toBeNull();
+        expect(meta.creationDate).toBeNull();
+        expect(meta.modDate).toBeNull();
+        expect(meta.keywords).toEqual([]);
+    });
+    it("treats empty strings as null", async () => {
+        const pdfPath = writePdf("blank.pdf", { Title: "", Author: "  " });
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.title).toBeNull();
+        expect(meta.author).toBeNull();
+    });
+    it("splits keywords by semicolons", async () => {
+        const pdfPath = writePdf("semicolon.pdf", { Keywords: "NLP; transformers; BERT" });
+        const meta = await extractPdfMetadata(pdfPath);
+        expect(meta.keywords).toEqual(["NLP", "transformers", "BERT"]);
+    });
+});
+//# sourceMappingURL=pdf.test.js.map

package/dist/extractor/pdf.test.js.map

@@ -0,0 +1 @@
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package/dist/index.js

@@ -4,6 +4,7 @@ import { Command } from "commander";
 import { createConfigCommand } from "./commands/config.js";
 import { createKnowledgeBaseCommand } from "./commands/knowledge-base.js";
 import { createLiteratureCommand } from "./commands/literature.js";
+import { createUtilCommand } from "./commands/util.js";
 import { startup } from "./lifecycle.js";
 const require = createRequire(import.meta.url);
 const { version } = require("../package.json");
@@ -15,5 +16,6 @@ program.hook("preAction", () => {
 program.addCommand(createConfigCommand());
 program.addCommand(createKnowledgeBaseCommand());
 program.addCommand(createLiteratureCommand());
+program.addCommand(createUtilCommand());
 program.parse();
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAEA,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAE5C,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAE,0BAA0B,EAAE,MAAM,8BAA8B,CAAC;AAC1E,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAC;AAEzC,MAAM,OAAO,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAwB,CAAC;AAEtE,MAAM,OAAO,GAAG,IAAI,OAAO,EAAE,CAAC;AAE9B,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,WAAW,CAAC,6BAA6B,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAElF,OAAO,CAAC,IAAI,CAAC,WAAW,EAAE,GAAG,EAAE;IAC7B,OAAO,EAAE,CAAC;AACZ,CAAC,CAAC,CAAC;AAEH,OAAO,CAAC,UAAU,CAAC,mBAAmB,EAAE,CAAC,CAAC;AAC1C,OAAO,CAAC,UAAU,CAAC,0BAA0B,EAAE,CAAC,CAAC;AACjD,OAAO,CAAC,UAAU,CAAC,uBAAuB,EAAE,CAAC,CAAC;AAE9C,OAAO,CAAC,KAAK,EAAE,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAEA,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAE5C,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAE,0BAA0B,EAAE,MAAM,8BAA8B,CAAC;AAC1E,OAAO,EAAE,uBAAuB,EAAE,MAAM,0BAA0B,CAAC;AACnE,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACvD,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAC;AAEzC,MAAM,OAAO,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,iBAAiB,CAAwB,CAAC;AAEtE,MAAM,OAAO,GAAG,IAAI,OAAO,EAAE,CAAC;AAE9B,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,WAAW,CAAC,6BAA6B,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;AAElF,OAAO,CAAC,IAAI,CAAC,WAAW,EAAE,GAAG,EAAE;IAC7B,OAAO,EAAE,CAAC;AACZ,CAAC,CAAC,CAAC;AAEH,OAAO,CAAC,UAAU,CAAC,mBAAmB,EAAE,CAAC,CAAC;AAC1C,OAAO,CAAC,UAAU,CAAC,0BAA0B,EAAE,CAAC,CAAC;AACjD,OAAO,CAAC,UAAU,CAAC,uBAAuB,EAAE,CAAC,CAAC;AAC9C,OAAO,CAAC,UAAU,CAAC,iBAAiB,EAAE,CAAC,CAAC;AAExC,OAAO,CAAC,KAAK,EAAE,CAAC"}

package/dist/types/index.d.ts

@@ -1,4 +1,5 @@
 import * as z from "zod";
+export type { KnowledgeBaseMetadata, LiteratureMetadata } from "../db/schema.js";
 export declare const EmbeddingModelConfigSchema: z.ZodObject<{
     provider: z.ZodEnum<{
         openai: "openai";
@@ -12,50 +13,33 @@ export declare const EmbeddingModelConfigSchema: z.ZodObject<{
 export type EmbeddingModelConfig = z.infer<typeof EmbeddingModelConfigSchema> & {
     id: string;
 };
-export declare const KnowledgeBaseMetadataSchema: z.ZodObject<{
-    id: z.ZodUUID;
-    name: z.ZodString;
-    description: z.ZodString;
-    embeddingModelId: z.ZodString;
-    createdAt: z.ZodDate;
-    updatedAt: z.ZodDate;
+export declare const UpdateKnowledgeBaseSchema: z.ZodObject<{
+    name: z.ZodOptional<z.ZodString>;
+    description: z.ZodOptional<z.ZodString>;
 }, z.core.$strip>;
-export type KnowledgeBaseMetadata = z.infer<typeof KnowledgeBaseMetadataSchema>;
-export declare const LiteratureMetadataSchema: z.ZodObject<{
-    id: z.ZodUUID;
-    title: z.ZodString;
-    titleTranslation: z.ZodNullable<z.ZodString>;
-    author: z.ZodNullable<z.ZodString>;
-    abstract: z.ZodNullable<z.ZodString>;
-    summary: z.ZodNullable<z.ZodString>;
-    keywords: z.ZodDefault<z.ZodArray<z.ZodString>>;
-    url: z.ZodNullable<z.ZodURL>;
-    notes: z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodString>>;
-    knowledgeBaseId: z.ZodUUID;
-    createdAt: z.ZodDate;
-    updatedAt: z.ZodDate;
-}, z.core.$strip>;
-export type LiteratureMetadata = z.infer<typeof LiteratureMetadataSchema>;
+export type UpdateKnowledgeBaseInput = z.infer<typeof UpdateKnowledgeBaseSchema>;
 export declare const CreateLiteratureSchema: z.ZodObject<{
-    url: z.ZodNullable<z.ZodURL>;
     title: z.ZodString;
     titleTranslation: z.ZodNullable<z.ZodString>;
     author: z.ZodNullable<z.ZodString>;
     abstract: z.ZodNullable<z.ZodString>;
     summary: z.ZodNullable<z.ZodString>;
     keywords: z.ZodDefault<z.ZodArray<z.ZodString>>;
+    url: z.ZodNullable<z.ZodURL>;
+    doi: z.ZodNullable<z.ZodString>;
     notes: z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodString>>;
     knowledgeBaseId: z.ZodUUID;
 }, z.core.$strip>;
 export type CreateLiteratureInput = z.infer<typeof CreateLiteratureSchema>;
 export declare const UpdateLiteratureSchema: z.ZodObject<{
-    url: z.ZodOptional<z.ZodNullable<z.ZodURL>>;
     title: z.ZodOptional<z.ZodString>;
     titleTranslation: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     author: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     abstract: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     summary: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     keywords: z.ZodOptional<z.ZodDefault<z.ZodArray<z.ZodString>>>;
+    url: z.ZodOptional<z.ZodNullable<z.ZodURL>>;
+    doi: z.ZodOptional<z.ZodNullable<z.ZodString>>;
     notes: z.ZodOptional<z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodString>>>;
     knowledgeBaseId: z.ZodOptional<z.ZodUUID>;
 }, z.core.$strip>;

package/dist/types/index.js

@@ -8,18 +8,13 @@ export const EmbeddingModelConfigSchema = z.object({
     dimensions: z.number().int().positive().optional(),
     batchSize: z.number().int().positive().optional(),
 });
-// ─── Knowledge Base ─────────────────────────────────────────
-export const KnowledgeBaseMetadataSchema = z.object({
-    id: z.uuid(),
-    name: z.string().min(1),
-    description: z.string(),
-    embeddingModelId: z.string().min(1),
-    createdAt: z.date(),
-    updatedAt: z.date(),
+// ─── Knowledge Base Input ───────────────────────────────────
+export const UpdateKnowledgeBaseSchema = z.object({
+    name: z.string().min(1).optional(),
+    description: z.string().optional(),
 });
-// ─── Literature ─────────────────────────────────────────────
-export const LiteratureMetadataSchema = z.object({
-    id: z.uuid(),
+// ─── Literature Input ───────────────────────────────────────
+export const CreateLiteratureSchema = z.object({
     title: z.string().min(1),
     titleTranslation: z.string().nullable(),
     author: z.string().nullable(),
@@ -27,15 +22,9 @@ export const LiteratureMetadataSchema = z.object({
     summary: z.string().nullable(),
     keywords: z.array(z.string()).default([]),
     url: z.url().nullable(),
+    doi: z.string().nullable(),
     notes: z.record(z.string(), z.string()).default({}),
     knowledgeBaseId: z.uuid(),
-    createdAt: z.date(),
-    updatedAt: z.date(),
-});
-export const CreateLiteratureSchema = LiteratureMetadataSchema.omit({
-    id: true,
-    createdAt: true,
-    updatedAt: true,
 });
 export const UpdateLiteratureSchema = CreateLiteratureSchema.partial();
 // ─── Config ─────────────────────────────────────────────────

package/dist/types/index.js.map

@@ -1 +1 @@
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package/dist/types/index.test.js

@@ -1,8 +1,7 @@
 import { describe, expect, it } from "vitest";
-import { ConfigSchema, CreateLiteratureSchema, EmbeddingModelConfigSchema, KnowledgeBaseMetadataSchema, LiteratureMetadataSchema, UpdateLiteratureSchema, } from "./index.js";
+import { ConfigSchema, CreateLiteratureSchema, EmbeddingModelConfigSchema, UpdateLiteratureSchema, } from "./index.js";
 // ─── Helpers ─────────────────────────────────────────────────
 const validUuid = "550e8400-e29b-41d4-a716-446655440000";
-const now = new Date();
 // ─── EmbeddingModelConfigSchema ──────────────────────────────
 describe("EmbeddingModelConfigSchema", () => {
     const minimal = { provider: "openai", model: "text-embedding-3-small", apiKey: "sk-test" };
@@ -32,87 +31,31 @@ describe("EmbeddingModelConfigSchema", () => {
         expect(() => EmbeddingModelConfigSchema.parse({ ...minimal, baseUrl: "not-a-url" })).toThrow();
     });
 });
-// ─── KnowledgeBaseMetadataSchema ─────────────────────────────
-describe("KnowledgeBaseMetadataSchema", () => {
-    const valid = {
-        id: validUuid,
-        name: "My KB",
-        description: "A test knowledge base",
-        embeddingModelId: "model-1",
-        createdAt: now,
-        updatedAt: now,
-    };
-    it("accepts a valid knowledge base", () => {
-        expect(KnowledgeBaseMetadataSchema.parse(valid)).toMatchObject(valid);
-    });
-    it("rejects non-uuid id", () => {
-        expect(() => KnowledgeBaseMetadataSchema.parse({ ...valid, id: "not-a-uuid" })).toThrow();
-    });
-    it("rejects empty name", () => {
-        expect(() => KnowledgeBaseMetadataSchema.parse({ ...valid, name: "" })).toThrow();
-    });
-    it("rejects empty embeddingModelId", () => {
-        expect(() => KnowledgeBaseMetadataSchema.parse({ ...valid, embeddingModelId: "" })).toThrow();
-    });
-});
-// ─── LiteratureMetadataSchema ────────────────────────────────
-describe("LiteratureMetadataSchema", () => {
-    const valid = {
-        id: validUuid,
-        title: "A Paper",
+// ─── CreateLiteratureSchema ──────────────────────────────────
+describe("CreateLiteratureSchema", () => {
+    const base = {
+        title: "Paper",
         titleTranslation: null,
         author: null,
         abstract: null,
         summary: null,
-        keywords: [],
-        url: null,
-        notes: {},
         knowledgeBaseId: validUuid,
-        createdAt: now,
-        updatedAt: now,
+        url: null,
+        doi: null,
     };
-    it("accepts a minimal valid literature", () => {
-        expect(LiteratureMetadataSchema.parse(valid)).toMatchObject(valid);
+    it("does not require id, createdAt, updatedAt", () => {
+        expect(() => CreateLiteratureSchema.parse(base)).not.toThrow();
     });
     it("fills defaults for keywords and notes", () => {
-        const { keywords: _, notes: __, ...without } = valid;
-        const result = LiteratureMetadataSchema.parse(without);
+        const result = CreateLiteratureSchema.parse(base);
         expect(result.keywords).toEqual([]);
         expect(result.notes).toEqual({});
     });
-    it("accepts populated optional fields", () => {
-        const full = {
-            ...valid,
-            titleTranslation: "一篇论文",
-            author: "Alice",
-            abstract: "This paper...",
-            summary: "Summary here",
-            keywords: ["ai", "ml"],
-            url: "https://arxiv.org/abs/1234.5678",
-            notes: { key: "value" },
-        };
-        expect(LiteratureMetadataSchema.parse(full)).toMatchObject(full);
-    });
     it("rejects empty title", () => {
-        expect(() => LiteratureMetadataSchema.parse({ ...valid, title: "" })).toThrow();
+        expect(() => CreateLiteratureSchema.parse({ ...base, title: "" })).toThrow();
     });
     it("rejects invalid url", () => {
-        expect(() => LiteratureMetadataSchema.parse({ ...valid, url: "not-a-url" })).toThrow();
-    });
-});
-// ─── CreateLiteratureSchema ──────────────────────────────────
-describe("CreateLiteratureSchema", () => {
-    it("does not require id, createdAt, updatedAt", () => {
-        const input = {
-            title: "New Paper",
-            titleTranslation: null,
-            author: null,
-            abstract: null,
-            summary: null,
-            knowledgeBaseId: validUuid,
-            url: null,
-        };
-        expect(() => CreateLiteratureSchema.parse(input)).not.toThrow();
+        expect(() => CreateLiteratureSchema.parse({ ...base, url: "not-a-url" })).toThrow();
     });
 });
 // ─── UpdateLiteratureSchema ──────────────────────────────────

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "paper-manager",
-  "version": "0.4.2",
+  "version": "0.6.0",
   "description": "A paper management system.",
   "keywords": [],
   "homepage": "https://github.com/EurFelux/paper-manager",
@@ -29,6 +29,7 @@
     "chalk": "^5.6.2",
     "cli-progress": "^3.12.0",
     "commander": "^14.0.3",
+    "drizzle-orm": "^0.45.1",
     "faiss-node": "^0.5.1",
     "langchain": "^1.2.28",
     "mime-types": "^3.0.2",
@@ -40,6 +41,7 @@
     "@types/better-sqlite3": "^7.6.13",
     "@types/cli-progress": "^3.11.6",
     "@types/mime-types": "^3.0.1",
+    "drizzle-kit": "^0.31.9",
     "eslint-plugin-simple-import-sort": "^12.1.1",
     "oxfmt": "^0.35.0",
     "oxlint": "^1.50.0",