panopticon-cli 0.5.8 → 0.5.10

package/dist/{chunk-ZMJFEHGF.js.map → chunk-7ZB5D46Y.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/lib/projects.ts"],"sourcesContent":["/**\n * Project Registry - Multi-project support for Panopticon\n *\n * Maps Linear team prefixes and labels to project paths for workspace creation.\n */\n\nimport { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';\nimport { join, resolve } from 'path';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\nimport { PANOPTICON_HOME } from './paths.js';\nimport type { QualityGateConfig } from './workspace-config.js';\n\nexport const PROJECTS_CONFIG_FILE = join(PANOPTICON_HOME, 'projects.yaml');\n\n/**\n * Issue routing rule - routes issues with certain labels to specific paths\n */\nexport interface IssueRoutingRule {\n  labels?: string[];\n  default?: boolean;\n  path: string;\n}\n\n/**\n * Workspace configuration (imported from workspace-config.ts for full details)\n */\nexport interface WorkspaceConfig {\n  type?: 'polyrepo' | 'monorepo';\n  workspaces_dir?: string;\n  repos?: Array<{ name: string; path: string; branch_prefix?: string }>;\n  dns?: { domain: string; entries: string[]; sync_method?: 'wsl2hosts' | 'hosts_file' | 'dnsmasq' };\n  ports?: Record<string, { range: [number, number] }>;\n  docker?: { traefik?: string; compose_template?: string };\n  database?: { seed_file?: string; container_name?: string; [key: string]: any };\n  agent?: { template_dir: string; templates?: Array<{ source: string; target: string }>; copy_dirs?: string[]; symlinks?: string[] };\n  env?: { template?: string; secrets_file?: string };\n  services?: Array<{ name: string; path: string; start_command: string; docker_command?: string; health_url?: string; port?: number }>;\n}\n\n/**\n * Test configuration\n */\nexport interface TestConfig {\n  type: string;\n  path: string;\n  command: string;\n  container?: boolean;\n  container_name?: string;\n  env?: Record<string, string>;\n}\n\n/**\n * Specialist configuration for per-project specialists\n */\nexport interface SpecialistConfig {\n  /** Number of recent runs to include in context digest (default: 5) */\n  context_runs?: number;\n  /** Model to use for generating context digests (null = same as specialist) */\n  digest_model?: string | null;\n  /** Log retention policy */\n  retention?: {\n    /** Maximum days to keep logs */\n    max_days: number;\n    /** Maximum number of runs to keep (whichever is more permissive) */\n    max_runs: number;\n  };\n  /** Per-specialist prompt overrides */\n  prompts?: {\n    'review-agent'?: string;\n    'test-agent'?: string;\n    'merge-agent'?: string;\n  };\n}\n\n/**\n * Project configuration\n */\nexport interface ProjectConfig {\n  name: string;\n  path: string;\n  linear_team?: string;\n  github_repo?: string;  // e.g. \"owner/repo\"\n  gitlab_repo?: string;  // e.g. \"group/repo\"\n  issue_routing?: IssueRoutingRule[];\n  /** Workspace configuration */\n  workspace?: WorkspaceConfig;\n  /** Test configuration by name */\n  tests?: Record<string, TestConfig>;\n  /** Custom command to create workspaces (e.g., infra/new-feature for MYN) */\n  workspace_command?: string;\n  /** Custom command to remove workspaces */\n  workspace_remove_command?: string;\n  /** Rally project OID (e.g., \"/project/822404704163\") for per-project Rally scoping */\n  rally_project?: string;\n  /** Specialist agent configuration */\n  specialists?: SpecialistConfig;\n  /** Quality gates run by merge-agent before pushing (lint, typecheck, prod build, etc.) */\n  quality_gates?: Record<string, QualityGateConfig>;\n  /**\n   * Path to the repo where per-project cost WAL files live.\n   * Defaults to `path` (the project repo itself).\n   * For polyrepo setups, point this at the docs/shared repo.\n   */\n  events_repo?: string;\n  /**\n   * Subdirectory within events_repo where cost JSONL files are stored.\n   * Defaults to \".panopticon/events\".\n   */\n  events_path?: string;\n}\n\n/**\n * Full projects configuration file\n */\nexport interface ProjectsConfig {\n  projects: Record<string, ProjectConfig>;\n}\n\n/**\n * Resolved project info for workspace creation\n */\nexport interface ResolvedProject {\n  projectKey: string;\n  projectName: string;\n  projectPath: string;\n  linearTeam?: string;\n}\n\n/**\n * Load projects configuration from ~/.panopticon/projects.yaml\n */\nexport function loadProjectsConfig(): ProjectsConfig {\n  if (!existsSync(PROJECTS_CONFIG_FILE)) {\n    return { projects: {} };\n  }\n\n  try {\n    const content = readFileSync(PROJECTS_CONFIG_FILE, 'utf-8');\n    const config = parseYaml(content) as ProjectsConfig;\n    return config || { projects: {} };\n  } catch (error: any) {\n    console.error(`Failed to parse projects.yaml: ${error.message}`);\n    return { projects: {} };\n  }\n}\n\n/**\n * Save projects configuration\n */\nexport function saveProjectsConfig(config: ProjectsConfig): void {\n  const dir = PANOPTICON_HOME;\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true });\n  }\n\n  const yaml = stringifyYaml(config, { indent: 2 });\n  writeFileSync(PROJECTS_CONFIG_FILE, yaml, 'utf-8');\n}\n\n/**\n * Get a list of all registered projects\n */\nexport function listProjects(): Array<{ key: string; config: ProjectConfig }> {\n  const config = loadProjectsConfig();\n  return Object.entries(config.projects).map(([key, projectConfig]) => ({\n    key,\n    config: projectConfig,\n  }));\n}\n\n/**\n * Add or update a project in the registry\n */\nexport function registerProject(key: string, projectConfig: ProjectConfig): void {\n  const config = loadProjectsConfig();\n  config.projects[key] = projectConfig;\n  saveProjectsConfig(config);\n}\n\n/**\n * Remove a project from the registry\n */\nexport function unregisterProject(key: string): boolean {\n  const config = loadProjectsConfig();\n  if (config.projects[key]) {\n    delete config.projects[key];\n    saveProjectsConfig(config);\n    return true;\n  }\n  return false;\n}\n\n/**\n * Extract Linear team prefix from an issue ID\n * E.g., \"MIN-123\" -> \"MIN\", \"PAN-456\" -> \"PAN\"\n */\nexport function extractTeamPrefix(issueId: string): string | null {\n  const match = issueId.match(/^([A-Z]+)-\\d+$/i);\n  return match ? match[1].toUpperCase() : null;\n}\n\n/**\n * Find project by Linear team prefix\n */\nexport function findProjectByTeam(teamPrefix: string): ProjectConfig | null {\n  const config = loadProjectsConfig();\n\n  for (const [, projectConfig] of Object.entries(config.projects)) {\n    if (projectConfig.linear_team?.toUpperCase() === teamPrefix.toUpperCase()) {\n      return projectConfig;\n    }\n  }\n\n  return null;\n}\n\n/**\n * Find project by workspace path.\n * Matches any project whose root path is an ancestor of the given path.\n * Used to resolve the tracker (GitHub/GitLab) from a workspace directory.\n */\nexport function findProjectByPath(workspacePath: string): ProjectConfig | null {\n  const config = loadProjectsConfig();\n  const normalizedTarget = resolve(workspacePath);\n\n  for (const [, projectConfig] of Object.entries(config.projects)) {\n    const normalizedProject = resolve(projectConfig.path);\n    if (normalizedTarget === normalizedProject || normalizedTarget.startsWith(normalizedProject + '/')) {\n      return projectConfig;\n    }\n  }\n\n  return null;\n}\n\n\n/**\n * Resolve the correct project path for an issue based on labels\n *\n * @param project - The project config\n * @param labels - Array of label names from the Linear issue\n * @returns The resolved path (may differ from project.path based on routing rules)\n */\nexport function resolveProjectPath(project: ProjectConfig, labels: string[] = []): string {\n  if (!project.issue_routing || project.issue_routing.length === 0) {\n    return project.path;\n  }\n\n  // Normalize labels to lowercase for comparison\n  const normalizedLabels = labels.map(l => l.toLowerCase());\n\n  // First, check label-based routing rules\n  for (const rule of project.issue_routing) {\n    if (rule.labels && rule.labels.length > 0) {\n      const ruleLabels = rule.labels.map(l => l.toLowerCase());\n      const hasMatch = ruleLabels.some(label => normalizedLabels.includes(label));\n      if (hasMatch) {\n        return rule.path;\n      }\n    }\n  }\n\n  // Then, find default rule\n  for (const rule of project.issue_routing) {\n    if (rule.default) {\n      return rule.path;\n    }\n  }\n\n  // Fall back to project path\n  return project.path;\n}\n\n/**\n * Resolve project from an issue ID (and optional labels)\n *\n * @param issueId - Linear issue ID (e.g., \"MIN-123\")\n * @param labels - Optional array of label names\n * @returns Resolved project info or null if not found\n */\nexport function resolveProjectFromIssue(\n  issueId: string,\n  labels: string[] = []\n): ResolvedProject | null {\n  const teamPrefix = extractTeamPrefix(issueId);\n  if (!teamPrefix) {\n    return null;\n  }\n\n  const config = loadProjectsConfig();\n\n  // Find project by team prefix (check linear_team first, then derive from project key)\n  for (const [key, projectConfig] of Object.entries(config.projects)) {\n    if (projectConfig.linear_team?.toUpperCase() === teamPrefix) {\n      const resolvedPath = resolveProjectPath(projectConfig, labels);\n      return {\n        projectKey: key,\n        projectName: projectConfig.name,\n        projectPath: resolvedPath,\n        linearTeam: projectConfig.linear_team,\n      };\n    }\n    // For GitHub-only projects without linear_team, derive prefix from project key\n    if (!projectConfig.linear_team && projectConfig.github_repo) {\n      const derivedPrefix = key.toUpperCase().replace(/-/g, '');\n      if (derivedPrefix === teamPrefix) {\n        const resolvedPath = resolveProjectPath(projectConfig, labels);\n        return {\n          projectKey: key,\n          projectName: projectConfig.name,\n          projectPath: resolvedPath,\n          linearTeam: undefined,\n        };\n      }\n    }\n  }\n\n  return null;\n}\n\n/**\n * Get a project by key\n */\nexport function getProject(key: string): ProjectConfig | null {\n  const config = loadProjectsConfig();\n  return config.projects[key] || null;\n}\n\n/**\n * Check if projects.yaml exists and has any projects\n */\nexport function hasProjects(): boolean {\n  const config = loadProjectsConfig();\n  return Object.keys(config.projects).length > 0;\n}\n\n/**\n * Create a default projects.yaml with example structure\n */\nexport function createDefaultProjectsConfig(): ProjectsConfig {\n  const defaultConfig: ProjectsConfig = {\n    projects: {\n      // Example project - commented out in actual file\n    },\n  };\n\n  return defaultConfig;\n}\n\n/**\n * Initialize projects.yaml with example configuration\n */\nexport function initializeProjectsConfig(): void {\n  if (existsSync(PROJECTS_CONFIG_FILE)) {\n    console.log(`Projects config already exists at ${PROJECTS_CONFIG_FILE}`);\n    return;\n  }\n\n  const exampleYaml = `# Panopticon Project Registry\n# Maps Linear teams to project paths for workspace creation\n\nprojects:\n  # Example: Mind Your Now project\n  # myn:\n  #   name: \"Mind Your Now\"\n  #   path: /home/user/projects/myn\n  #   linear_team: MIN\n  #   issue_routing:\n  #     # Route docs/marketing issues to docs repo\n  #     - labels: [docs, marketing, seo, landing-pages]\n  #       path: /home/user/projects/myn/docs\n  #     # Default: main repo\n  #     - default: true\n  #       path: /home/user/projects/myn\n  #   specialists:\n  #     context_runs: 5\n  #     digest_model: null  # Use same model as specialist\n  #     retention:\n  #       max_days: 30\n  #       max_runs: 50\n  #     prompts:\n  #       review-agent: |\n  #         Pay special attention to:\n  #         - Database migration safety\n  #         - API backward compatibility\n\n  # Example: Panopticon itself\n  # panopticon:\n  #   name: \"Panopticon\"\n  #   path: /home/user/projects/panopticon\n  #   linear_team: PAN\n`;\n\n  const dir = PANOPTICON_HOME;\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true });\n  }\n\n  writeFileSync(PROJECTS_CONFIG_FILE, exampleYaml, 'utf-8');\n  console.log(`Created example projects config at ${PROJECTS_CONFIG_FILE}`);\n}\n\n/**\n * Default specialist configuration values\n */\nconst DEFAULT_SPECIALIST_CONFIG: Required<SpecialistConfig> = {\n  context_runs: 5,\n  digest_model: null,\n  retention: {\n    max_days: 30,\n    max_runs: 50,\n  },\n  prompts: {},\n};\n\n/**\n * Get specialist configuration for a project with defaults\n *\n * @param projectKey - Project key\n * @returns Specialist config with defaults applied\n */\nexport function getSpecialistConfig(projectKey: string): Required<SpecialistConfig> {\n  const project = getProject(projectKey);\n\n  if (!project || !project.specialists) {\n    return DEFAULT_SPECIALIST_CONFIG;\n  }\n\n  return {\n    context_runs: project.specialists.context_runs ?? DEFAULT_SPECIALIST_CONFIG.context_runs,\n    digest_model: project.specialists.digest_model ?? DEFAULT_SPECIALIST_CONFIG.digest_model,\n    retention: {\n      max_days: project.specialists.retention?.max_days ?? DEFAULT_SPECIALIST_CONFIG.retention.max_days,\n      max_runs: project.specialists.retention?.max_runs ?? DEFAULT_SPECIALIST_CONFIG.retention.max_runs,\n    },\n    prompts: project.specialists.prompts ?? DEFAULT_SPECIALIST_CONFIG.prompts,\n  };\n}\n\n/**\n * Get retention policy for a project's specialists\n *\n * @param projectKey - Project key\n * @returns Retention policy\n */\nexport function getSpecialistRetention(projectKey: string): { max_days: number; max_runs: number } {\n  const config = getSpecialistConfig(projectKey);\n  return config.retention;\n}\n\n/**\n * Find all projects that have a rally_project configured.\n * Returns array of { key, config } for projects with Rally project OIDs.\n */\nexport function findProjectsByRallyProject(): Array<{ key: string; config: ProjectConfig }> {\n  const config = loadProjectsConfig();\n  return Object.entries(config.projects)\n    .filter(([, projectConfig]) => !!projectConfig.rally_project)\n    .map(([key, projectConfig]) => ({ key, config: projectConfig }));\n}\n\n/**\n * Get custom prompt override for a specialist (if configured)\n *\n * @param projectKey - Project key\n * @param specialistType - Specialist type\n * @returns 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+{"version":3,"sources":["../src/lib/projects.ts"],"sourcesContent":["/**\n * Project Registry - Multi-project support for Panopticon\n *\n * Maps Linear team prefixes and labels to project paths for workspace creation.\n */\n\nimport { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';\nimport { join, resolve } from 'path';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\nimport { PANOPTICON_HOME } from './paths.js';\nimport type { QualityGateConfig } from './workspace-config.js';\n\nexport const PROJECTS_CONFIG_FILE = join(PANOPTICON_HOME, 'projects.yaml');\n\n/**\n * Issue routing rule - routes issues with certain labels to specific paths\n */\nexport interface IssueRoutingRule {\n  labels?: string[];\n  default?: boolean;\n  path: string;\n}\n\n/**\n * Workspace configuration (imported from workspace-config.ts for full details)\n */\nexport interface WorkspaceConfig {\n  type?: 'polyrepo' | 'monorepo';\n  workspaces_dir?: string;\n  repos?: Array<{ name: string; path: string; branch_prefix?: string }>;\n  dns?: { domain: string; entries: string[]; sync_method?: 'wsl2hosts' | 'hosts_file' | 'dnsmasq' };\n  ports?: Record<string, { range: [number, number] }>;\n  docker?: { traefik?: string; compose_template?: string };\n  database?: { seed_file?: string; container_name?: string; [key: string]: any };\n  agent?: { template_dir: string; templates?: Array<{ source: string; target: string }>; copy_dirs?: string[]; symlinks?: string[] };\n  env?: { template?: string; secrets_file?: string };\n  services?: Array<{ name: string; path: string; start_command: string; docker_command?: string; health_url?: string; port?: number }>;\n}\n\n/**\n * Test configuration\n */\nexport interface TestConfig {\n  type: string;\n  path: string;\n  command: string;\n  container?: boolean;\n  container_name?: string;\n  env?: Record<string, string>;\n}\n\n/**\n * Specialist configuration for per-project specialists\n */\nexport interface SpecialistConfig {\n  /** Number of recent runs to include in context digest (default: 5) */\n  context_runs?: number;\n  /** Model to use for generating context digests (null = same as specialist) */\n  digest_model?: string | null;\n  /** Log retention policy */\n  retention?: {\n    /** Maximum days to keep logs */\n    max_days: number;\n    /** Maximum number of runs to keep (whichever is more permissive) */\n    max_runs: number;\n  };\n  /** Per-specialist prompt overrides */\n  prompts?: {\n    'review-agent'?: string;\n    'test-agent'?: string;\n    'merge-agent'?: string;\n  };\n}\n\n/**\n * Project configuration\n */\nexport interface ProjectConfig {\n  name: string;\n  path: string;\n  linear_team?: string;\n  github_repo?: string;  // e.g. \"owner/repo\"\n  gitlab_repo?: string;  // e.g. \"group/repo\"\n  issue_routing?: IssueRoutingRule[];\n  /** Workspace configuration */\n  workspace?: WorkspaceConfig;\n  /** Test configuration by name */\n  tests?: Record<string, TestConfig>;\n  /** Custom command to create workspaces (e.g., infra/new-feature for MYN) */\n  workspace_command?: string;\n  /** Custom command to remove workspaces */\n  workspace_remove_command?: string;\n  /** Rally project OID (e.g., \"/project/822404704163\") for per-project Rally scoping */\n  rally_project?: string;\n  /** Specialist agent configuration */\n  specialists?: SpecialistConfig;\n  /** Quality gates run by merge-agent before pushing (lint, typecheck, prod build, etc.) */\n  quality_gates?: Record<string, QualityGateConfig>;\n  /**\n   * Path to the repo where per-project cost WAL files live.\n   * Defaults to `path` (the project repo itself).\n   * For polyrepo setups, point this at the docs/shared repo.\n   */\n  events_repo?: string;\n  /**\n   * Subdirectory within events_repo where cost JSONL files are stored.\n   * Defaults to \".panopticon/events\".\n   */\n  events_path?: string;\n}\n\n/**\n * Full projects configuration file\n */\nexport interface ProjectsConfig {\n  projects: Record<string, ProjectConfig>;\n}\n\n/**\n * Resolved project info for workspace creation\n */\nexport interface ResolvedProject {\n  projectKey: string;\n  projectName: string;\n  projectPath: string;\n  linearTeam?: string;\n}\n\n/**\n * Load projects configuration from ~/.panopticon/projects.yaml\n */\nexport function loadProjectsConfig(): ProjectsConfig {\n  if (!existsSync(PROJECTS_CONFIG_FILE)) {\n    return { projects: {} };\n  }\n\n  try {\n    const content = readFileSync(PROJECTS_CONFIG_FILE, 'utf-8');\n    const config = parseYaml(content) as ProjectsConfig;\n    return config || { projects: {} };\n  } catch (error: any) {\n    console.error(`Failed to parse projects.yaml: ${error.message}`);\n    return { projects: {} };\n  }\n}\n\n/**\n * Save projects configuration\n */\nexport function saveProjectsConfig(config: ProjectsConfig): void {\n  const dir = PANOPTICON_HOME;\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true });\n  }\n\n  const yaml = stringifyYaml(config, { indent: 2 });\n  writeFileSync(PROJECTS_CONFIG_FILE, yaml, 'utf-8');\n}\n\n/**\n * Get a list of all registered projects\n */\nexport function listProjects(): Array<{ key: string; config: ProjectConfig }> {\n  const config = loadProjectsConfig();\n  return Object.entries(config.projects).map(([key, projectConfig]) => ({\n    key,\n    config: projectConfig,\n  }));\n}\n\n/**\n * Add or update a project in the registry\n */\nexport function registerProject(key: string, projectConfig: ProjectConfig): void {\n  const config = loadProjectsConfig();\n  config.projects[key] = projectConfig;\n  saveProjectsConfig(config);\n}\n\n/**\n * Remove a project from the registry\n */\nexport function unregisterProject(key: string): boolean {\n  const config = loadProjectsConfig();\n  if (config.projects[key]) {\n    delete config.projects[key];\n    saveProjectsConfig(config);\n    return true;\n  }\n  return false;\n}\n\n/**\n * Extract Linear team prefix from an issue ID\n * E.g., \"MIN-123\" -> \"MIN\", \"PAN-456\" -> \"PAN\"\n */\nexport function extractTeamPrefix(issueId: string): string | null {\n  const match = issueId.match(/^([A-Z]+)-\\d+$/i);\n  return match ? match[1].toUpperCase() : null;\n}\n\n/**\n * Find project by Linear team prefix\n */\nexport function findProjectByTeam(teamPrefix: string): ProjectConfig | null {\n  const config = loadProjectsConfig();\n\n  for (const [, projectConfig] of Object.entries(config.projects)) {\n    if (projectConfig.linear_team?.toUpperCase() === teamPrefix.toUpperCase()) {\n      return projectConfig;\n    }\n  }\n\n  return null;\n}\n\n/**\n * Find project by workspace path.\n * Matches any project whose root path is an ancestor of the given path.\n * Used to resolve the tracker (GitHub/GitLab) from a workspace directory.\n */\nexport function findProjectByPath(workspacePath: string): ProjectConfig | null {\n  const config = loadProjectsConfig();\n  const normalizedTarget = resolve(workspacePath);\n\n  for (const [, projectConfig] of Object.entries(config.projects)) {\n    const normalizedProject = resolve(projectConfig.path);\n    if (normalizedTarget === normalizedProject || normalizedTarget.startsWith(normalizedProject + '/')) {\n      return projectConfig;\n    }\n  }\n\n  return null;\n}\n\n\n/**\n * Resolve the correct project path for an issue based on labels\n *\n * @param project - The project config\n * @param labels - Array of label names from the Linear issue\n * @returns The resolved path (may differ from project.path based on routing rules)\n */\nexport function resolveProjectPath(project: ProjectConfig, labels: string[] = []): string {\n  if (!project.issue_routing || project.issue_routing.length === 0) {\n    return project.path;\n  }\n\n  // Normalize labels to lowercase for comparison\n  const normalizedLabels = labels.map(l => l.toLowerCase());\n\n  // First, check label-based routing rules\n  for (const rule of project.issue_routing) {\n    if (rule.labels && rule.labels.length > 0) {\n      const ruleLabels = rule.labels.map(l => l.toLowerCase());\n      const hasMatch = ruleLabels.some(label => normalizedLabels.includes(label));\n      if (hasMatch) {\n        return rule.path;\n      }\n    }\n  }\n\n  // Then, find default rule\n  for (const rule of project.issue_routing) {\n    if (rule.default) {\n      return rule.path;\n    }\n  }\n\n  // Fall back to project path\n  return project.path;\n}\n\n/**\n * Resolve project from an issue ID (and optional labels)\n *\n * @param issueId - Linear issue ID (e.g., \"MIN-123\")\n * @param labels - Optional array of label names\n * @returns Resolved project info or null if not found\n */\nexport function resolveProjectFromIssue(\n  issueId: string,\n  labels: string[] = []\n): ResolvedProject | null {\n  const teamPrefix = extractTeamPrefix(issueId);\n  if (!teamPrefix) {\n    return null;\n  }\n\n  const config = loadProjectsConfig();\n\n  // Find project by team prefix (check linear_team first, then derive from project key)\n  for (const [key, projectConfig] of Object.entries(config.projects)) {\n    if (projectConfig.linear_team?.toUpperCase() === teamPrefix) {\n      const resolvedPath = resolveProjectPath(projectConfig, labels);\n      return {\n        projectKey: key,\n        projectName: projectConfig.name,\n        projectPath: resolvedPath,\n        linearTeam: projectConfig.linear_team,\n      };\n    }\n    // For projects without linear_team (GitHub-only or Rally-only), derive prefix from project key\n    if (!projectConfig.linear_team && (projectConfig.github_repo || projectConfig.rally_project)) {\n      const derivedPrefix = key.toUpperCase().replace(/-/g, '');\n      if (derivedPrefix === teamPrefix) {\n        const resolvedPath = resolveProjectPath(projectConfig, labels);\n        return {\n          projectKey: key,\n          projectName: projectConfig.name,\n          projectPath: resolvedPath,\n          linearTeam: undefined,\n        };\n      }\n    }\n  }\n\n  return null;\n}\n\n/**\n * Get a project by key\n */\nexport function getProject(key: string): ProjectConfig | null {\n  const config = loadProjectsConfig();\n  return config.projects[key] || null;\n}\n\n/**\n * Check if projects.yaml exists and has any projects\n */\nexport function hasProjects(): boolean {\n  const config = loadProjectsConfig();\n  return Object.keys(config.projects).length > 0;\n}\n\n/**\n * Create a default projects.yaml with example structure\n */\nexport function createDefaultProjectsConfig(): ProjectsConfig {\n  const defaultConfig: ProjectsConfig = {\n    projects: {\n      // Example project - commented out in actual file\n    },\n  };\n\n  return defaultConfig;\n}\n\n/**\n * Initialize projects.yaml with example configuration\n */\nexport function initializeProjectsConfig(): void {\n  if (existsSync(PROJECTS_CONFIG_FILE)) {\n    console.log(`Projects config already exists at ${PROJECTS_CONFIG_FILE}`);\n    return;\n  }\n\n  const exampleYaml = `# Panopticon Project Registry\n# Maps Linear teams to project paths for workspace creation\n\nprojects:\n  # Example: Mind Your Now project\n  # myn:\n  #   name: \"Mind Your Now\"\n  #   path: /home/user/projects/myn\n  #   linear_team: MIN\n  #   issue_routing:\n  #     # Route docs/marketing issues to docs repo\n  #     - labels: [docs, marketing, seo, landing-pages]\n  #       path: /home/user/projects/myn/docs\n  #     # Default: main repo\n  #     - default: true\n  #       path: /home/user/projects/myn\n  #   specialists:\n  #     context_runs: 5\n  #     digest_model: null  # Use same model as specialist\n  #     retention:\n  #       max_days: 30\n  #       max_runs: 50\n  #     prompts:\n  #       review-agent: |\n  #         Pay special attention to:\n  #         - Database migration safety\n  #         - API backward compatibility\n\n  # Example: Panopticon itself\n  # panopticon:\n  #   name: \"Panopticon\"\n  #   path: /home/user/projects/panopticon\n  #   linear_team: PAN\n`;\n\n  const dir = PANOPTICON_HOME;\n  if (!existsSync(dir)) {\n    mkdirSync(dir, { recursive: true });\n  }\n\n  writeFileSync(PROJECTS_CONFIG_FILE, exampleYaml, 'utf-8');\n  console.log(`Created example projects config at ${PROJECTS_CONFIG_FILE}`);\n}\n\n/**\n * Default specialist configuration values\n */\nconst DEFAULT_SPECIALIST_CONFIG: Required<SpecialistConfig> = {\n  context_runs: 5,\n  digest_model: null,\n  retention: {\n    max_days: 30,\n    max_runs: 50,\n  },\n  prompts: {},\n};\n\n/**\n * Get specialist configuration for a project with defaults\n *\n * @param projectKey - Project key\n * @returns Specialist config with defaults applied\n */\nexport function getSpecialistConfig(projectKey: string): Required<SpecialistConfig> {\n  const project = getProject(projectKey);\n\n  if (!project || !project.specialists) {\n    return DEFAULT_SPECIALIST_CONFIG;\n  }\n\n  return {\n    context_runs: project.specialists.context_runs ?? DEFAULT_SPECIALIST_CONFIG.context_runs,\n    digest_model: project.specialists.digest_model ?? DEFAULT_SPECIALIST_CONFIG.digest_model,\n    retention: {\n      max_days: project.specialists.retention?.max_days ?? DEFAULT_SPECIALIST_CONFIG.retention.max_days,\n      max_runs: project.specialists.retention?.max_runs ?? DEFAULT_SPECIALIST_CONFIG.retention.max_runs,\n    },\n    prompts: project.specialists.prompts ?? DEFAULT_SPECIALIST_CONFIG.prompts,\n  };\n}\n\n/**\n * Get retention policy for a project's specialists\n *\n * @param projectKey - Project key\n * @returns Retention policy\n */\nexport function getSpecialistRetention(projectKey: string): { max_days: number; max_runs: number } {\n  const config = getSpecialistConfig(projectKey);\n  return config.retention;\n}\n\n/**\n * Find all projects that have a rally_project configured.\n * Returns array of { key, config } for projects with Rally project OIDs.\n */\nexport function findProjectsByRallyProject(): Array<{ key: string; config: ProjectConfig }> {\n  const config = loadProjectsConfig();\n  return Object.entries(config.projects)\n    .filter(([, projectConfig]) => !!projectConfig.rally_project)\n    .map(([key, projectConfig]) => ({ key, config: projectConfig }));\n}\n\n/**\n * Get custom prompt override for a specialist (if configured)\n *\n * @param projectKey - Project key\n * @param specialistType - Specialist type\n * @returns 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package/dist/{chunk-BYWVPPAZ.js → chunk-BHRMW7BY.js}

@@ -299,6 +299,10 @@ function processTemplates(templateDir, targetDir, placeholders, templates) {
         const content = readFileSync2(sourcePath, "utf-8");
         const processed = replacePlaceholders(content, placeholders);
         writeFileSync2(targetPath, processed);
+        const targetName = file.replace(".template", "");
+        if (targetName === "dev" || targetName.endsWith(".sh")) {
+          chmodSync(targetPath, 493);
+        }
         steps.push(`Processed template: ${file}`);
       }
     }
@@ -577,10 +581,10 @@ VITE_HUME_CONFIG_ID=${humeResult.configId}
   }
   if (startDocker) {
     if (workspaceConfig.docker?.traefik) {
-      const traefikPath = join2(projectConfig.path, workspaceConfig.docker.traefik);
+      const traefikPath = join2(homedir(), ".panopticon", "traefik", "docker-compose.yml");
       if (existsSync2(traefikPath)) {
         try {
-          await execAsync(`docker compose -f "${traefikPath}" up -d`, { cwd: projectConfig.path });
+          await execAsync(`docker compose -f "${traefikPath}" up -d`, { cwd: join2(homedir(), ".panopticon", "traefik") });
           result.steps.push("Started Traefik");
         } catch (error) {
           const msg = error?.message || String(error);
@@ -676,7 +680,30 @@ async function stopWorkspaceDocker(workspacePath, projectName, featureName) {
     try {
       const fileFlags = composeFiles.map((f) => `-f "${f}"`).join(" ");
       const cwd = existsSync2(devcontainerDir) ? devcontainerDir : workspacePath;
-      await execAsync(`docker compose ${fileFlags} down -v --remove-orphans`, {
+      let composeProjectName = `${projectName}-feature-${featureName}`;
+      const devScriptPaths = [
+        join2(workspacePath, ".devcontainer", "dev"),
+        join2(workspacePath, "dev")
+      ];
+      for (const devPath of devScriptPaths) {
+        try {
+          if (existsSync2(devPath)) {
+            const content = readFileSync2(devPath, "utf-8");
+            const match = content.match(/COMPOSE_PROJECT_NAME="([^$"]*)\$\{FEATURE_FOLDER\}"/);
+            if (match) {
+              composeProjectName = `${match[1]}feature-${featureName}`;
+              break;
+            }
+            const literalMatch = content.match(/COMPOSE_PROJECT_NAME="([^"]+)"/);
+            if (literalMatch) {
+              composeProjectName = literalMatch[1];
+              break;
+            }
+          }
+        } catch {
+        }
+      }
+      await execAsync(`docker compose ${fileFlags} -p "${composeProjectName}" down -v --remove-orphans`, {
         cwd,
         timeout: 6e4
       });
@@ -823,4 +850,4 @@ export {
   removeWorkspace,
   init_workspace_manager
 };
-//# sourceMappingURL=chunk-BYWVPPAZ.js.map
+//# sourceMappingURL=chunk-BHRMW7BY.js.map

package/dist/chunk-BHRMW7BY.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/lib/skills-merge.ts","../src/lib/workspace-manager.ts"],"sourcesContent":["import {\n  existsSync,\n  readdirSync,\n  mkdirSync,\n  readFileSync,\n  writeFileSync,\n  copyFileSync,\n  statSync,\n} from 'fs';\nimport { join, relative, dirname } from 'path';\nimport { SKILLS_DIR, CACHE_AGENTS_DIR, CACHE_RULES_DIR } from './paths.js';\nimport {\n  readManifest,\n  writeManifest,\n  collectSourceFiles,\n  hashFile,\n  setManifestEntry,\n  compareFileToManifest,\n  type Manifest,\n} from './manifest.js';\n\nexport interface MergeResult {\n  added: string[];\n  updated: string[];\n  skipped: string[];\n  overlayed: string[];\n}\n\n/**\n * Copy all files from a source directory into a target directory,\n * preserving subdirectory structure. Returns the list of relative paths copied.\n */\nfunction copyTree(sourceDir: string, targetDir: string): string[] {\n  const copied: string[] = [];\n  if (!existsSync(sourceDir)) return copied;\n\n  function walk(dir: string): void {\n    const entries = readdirSync(dir, { withFileTypes: true });\n    for (const entry of entries) {\n      const fullPath = join(dir, entry.name);\n      if (entry.isDirectory()) {\n        walk(fullPath);\n      } else if (entry.isFile()) {\n        const rel = relative(sourceDir, fullPath);\n        const targetPath = join(targetDir, rel);\n        mkdirSync(dirname(targetPath), { recursive: true });\n        copyFileSync(fullPath, targetPath);\n        copied.push(rel);\n      }\n    }\n  }\n\n  walk(sourceDir);\n  return copied;\n}\n\n/**\n * Merge Panopticon skills, agents, and rules into a workspace using file copies.\n *\n * Flow:\n * 1. Copy from cache (skills, agent-definitions, rules) → workspace/.claude/\n * 2. Write manifest tracking what was placed\n *\n * Project template overlay is handled separately by workspace-manager.ts\n * (processTemplates + createSymlinks → now also copy-based).\n */\nexport function mergeSkillsIntoWorkspace(workspacePath: string): MergeResult {\n  const claudeDir = join(workspacePath, '.claude');\n  const manifestPath = join(claudeDir, '.panopticon-manifest.json');\n  const manifest = readManifest(manifestPath);\n\n  const result: MergeResult = {\n    added: [],\n    updated: [],\n    skipped: [],\n    overlayed: [],\n  };\n\n  // Ensure base directories exist\n  mkdirSync(join(claudeDir, 'skills'), { recursive: true });\n  mkdirSync(join(claudeDir, 'agents'), { recursive: true });\n\n  // Sources to copy: category → source cache directory\n  const sources: Array<{ category: string; sourceDir: string; targetSubdir: string }> = [\n    { category: 'skills', sourceDir: SKILLS_DIR, targetSubdir: 'skills' },\n    { category: 'agents', sourceDir: CACHE_AGENTS_DIR, targetSubdir: 'agents' },\n    { category: 'rules', sourceDir: CACHE_RULES_DIR, targetSubdir: 'rules' },\n  ];\n\n  for (const { category, sourceDir, targetSubdir } of sources) {\n    if (!existsSync(sourceDir)) continue;\n\n    const prefix = targetSubdir ? `${targetSubdir}/` : '';\n    const files = collectSourceFiles(sourceDir, '');\n\n    for (const file of files) {\n      const relativePath = `${prefix}${file.relativePath}`;\n      const targetPath = join(claudeDir, relativePath);\n      const sourceHash = hashFile(file.absolutePath);\n\n      // Check status against manifest\n      const status = compareFileToManifest(targetPath, relativePath, manifest);\n\n      switch (status.action) {\n        case 'new':\n          // File doesn't exist at target — copy it\n          mkdirSync(dirname(targetPath), { recursive: true });\n          copyFileSync(file.absolutePath, targetPath);\n          setManifestEntry(manifest, relativePath, sourceHash, 'panopticon');\n          result.added.push(relativePath);\n          break;\n\n        case 'update':\n          // File exists and matches manifest — safe to overwrite with latest\n          copyFileSync(file.absolutePath, targetPath);\n          setManifestEntry(manifest, relativePath, sourceHash, 'panopticon');\n          result.updated.push(relativePath);\n          break;\n\n        case 'modified':\n          // User modified the file — skip to preserve their changes\n          result.skipped.push(`${relativePath} (modified by user)`);\n          break;\n\n        case 'user-owned':\n          // File exists but wasn't placed by us — never touch\n          result.skipped.push(`${relativePath} (user-owned)`);\n          break;\n      }\n    }\n  }\n\n  // Write updated manifest\n  writeManifest(manifestPath, manifest);\n\n  return result;\n}\n\n/**\n * Apply project template overlay on top of Panopticon base files in a workspace.\n *\n * This copies files from the project's agent template directory into\n * workspace/.claude/, overwriting Panopticon files where the project\n * provides its own version. Updates the manifest with source=\"project-template\".\n *\n * @param workspacePath - Path to the workspace\n * @param templateDir - Absolute path to the project's agent template directory\n * @param templates - Optional list of specific template files to process (source → target mappings)\n */\nexport function applyProjectTemplateOverlay(\n  workspacePath: string,\n  templateDir: string,\n  templates?: Array<{ source: string; target: string }>,\n): string[] {\n  const claudeDir = join(workspacePath, '.claude');\n  const manifestPath = join(claudeDir, '.panopticon-manifest.json');\n  const manifest = readManifest(manifestPath);\n  const overlayed: string[] = [];\n\n  if (!existsSync(templateDir)) return overlayed;\n\n  if (templates && templates.length > 0) {\n    // Process specific template mappings\n    for (const { source, target } of templates) {\n      const sourcePath = join(templateDir, source);\n      if (!existsSync(sourcePath)) continue;\n\n      const targetPath = join(workspacePath, target);\n      mkdirSync(dirname(targetPath), { recursive: true });\n\n      // Read template content and check if it's a template file\n      if (source.endsWith('.template')) {\n        // Template files are handled by workspace-manager's processTemplates\n        // We just track them in the manifest after they're processed\n        continue;\n      }\n\n      copyFileSync(sourcePath, targetPath);\n\n      // Track in manifest if it's under .claude/\n      if (target.startsWith('.claude/')) {\n        const relativePath = target.slice('.claude/'.length);\n        const hash = hashFile(targetPath);\n        setManifestEntry(manifest, relativePath, hash, 'project-template');\n        overlayed.push(relativePath);\n      }\n    }\n  } else {\n    // Copy all .claude/ subdirectories from template dir\n    const claudeInTemplate = join(templateDir, '.claude');\n    if (existsSync(claudeInTemplate)) {\n      const copied = copyTree(claudeInTemplate, claudeDir);\n      for (const rel of copied) {\n        const targetPath = join(claudeDir, rel);\n        const hash = hashFile(targetPath);\n        setManifestEntry(manifest, rel, hash, 'project-template');\n        overlayed.push(rel);\n      }\n    }\n  }\n\n  // Write updated manifest\n  writeManifest(manifestPath, manifest);\n\n  return overlayed;\n}\n\n// ─── Legacy exports (kept for migration, to be removed in future) ───\n\n/**\n * @deprecated No longer needed — skills are copies, not symlinks. Kept for migration.\n */\nexport function cleanupGitignore(gitignorePath: string): {\n  cleaned: boolean;\n  duplicatesRemoved: number;\n  entriesAfter: number;\n} {\n  if (!existsSync(gitignorePath)) {\n    return { cleaned: false, duplicatesRemoved: 0, entriesAfter: 0 };\n  }\n\n  const PANOPTICON_HEADER = '# Panopticon-managed symlinks (not committed)';\n  let content: string;\n  try {\n    content = readFileSync(gitignorePath, 'utf-8');\n  } catch {\n    return { cleaned: false, duplicatesRemoved: 0, entriesAfter: 0 };\n  }\n\n  // If no Panopticon section, nothing to clean\n  if (!content.includes(PANOPTICON_HEADER)) {\n    return { cleaned: false, duplicatesRemoved: 0, entriesAfter: 0 };\n  }\n\n  // Remove the entire Panopticon section (skills are copies now, not symlinks)\n  const lines = content.split('\\n');\n  const newLines: string[] = [];\n  let inPanopticonSection = false;\n\n  for (const line of lines) {\n    const trimmed = line.trim();\n    if (trimmed === PANOPTICON_HEADER) {\n      inPanopticonSection = true;\n      continue;\n    }\n    if (inPanopticonSection) {\n      if (trimmed.startsWith('#') && trimmed !== '') {\n        inPanopticonSection = false;\n        newLines.push(line);\n      } else if (trimmed === '') {\n        // Skip blank lines in Panopticon section\n        continue;\n      }\n      // Skip entries in Panopticon section\n      continue;\n    }\n    newLines.push(line);\n  }\n\n  // Write cleaned file\n  try {\n    writeFileSync(gitignorePath, newLines.join('\\n'), 'utf-8');\n    return { cleaned: true, duplicatesRemoved: 0, entriesAfter: 0 };\n  } catch {\n    return { cleaned: false, duplicatesRemoved: 0, entriesAfter: 0 };\n  }\n}\n\n/**\n * @deprecated No longer needed — skills are copies, not symlinks. Kept for migration.\n */\nexport function cleanupWorkspaceGitignore(workspacePath: string): {\n  cleaned: boolean;\n  duplicatesRemoved: number;\n  entriesAfter: number;\n} {\n  const gitignorePath = join(workspacePath, '.claude', 'skills', '.gitignore');\n  return cleanupGitignore(gitignorePath);\n}\n","/**\n * Workspace Manager\n *\n * Handles workspace creation and removal for both monorepo and polyrepo projects.\n */\n\nimport { existsSync, mkdirSync, writeFileSync, readFileSync, readdirSync, copyFileSync, symlinkSync, chmodSync, realpathSync, rmSync, statSync } from 'fs';\nimport { join, dirname, basename, extname, resolve } from 'path';\nimport { homedir } from 'os';\nimport { exec } from 'child_process';\nimport { promisify } from 'util';\nimport {\n  ProjectConfig,\n  WorkspaceConfig,\n  TemplatePlaceholders,\n  replacePlaceholders,\n  getDefaultWorkspaceConfig,\n} from './workspace-config.js';\nimport { addDnsEntry, removeDnsEntry, syncDnsToWindows } from './dns.js';\nimport { addTunnelIngress, removeTunnelIngress } from './tunnel.js';\nimport { createHumeConfig, deleteHumeConfig } from './hume.js';\nimport { mergeSkillsIntoWorkspace } from './skills-merge.js';\n\nconst execAsync = promisify(exec);\n\nexport interface WorkspaceCreateOptions {\n  projectConfig: ProjectConfig;\n  featureName: string;\n  startDocker?: boolean;\n  dryRun?: boolean;\n}\n\nexport interface WorkspaceCreateResult {\n  success: boolean;\n  workspacePath: string;\n  errors: string[];\n  steps: string[];\n}\n\n/**\n * Create placeholders for template substitution\n */\nfunction createPlaceholders(\n  projectConfig: ProjectConfig,\n  featureName: string,\n  workspacePath: string\n): TemplatePlaceholders {\n  const featureFolder = `feature-${featureName}`;\n  const domain = projectConfig.workspace?.dns?.domain || 'localhost';\n\n  return {\n    FEATURE_NAME: featureName,\n    FEATURE_FOLDER: featureFolder,\n    BRANCH_NAME: `feature/${featureName}`,\n    COMPOSE_PROJECT: `${basename(projectConfig.path)}-${featureFolder}`,\n    DOMAIN: domain,\n    PROJECT_NAME: basename(projectConfig.path),\n    PROJECT_PATH: projectConfig.path,\n    PROJECTS_DIR: dirname(projectConfig.path),\n    WORKSPACE_PATH: workspacePath,\n    HOME: homedir(),\n  };\n}\n\n/**\n * Sanitize docker-compose files to use platform-agnostic paths\n * Replaces hardcoded /home/username paths with ${HOME}\n */\nfunction sanitizeComposeFile(filePath: string): void {\n  if (!existsSync(filePath)) return;\n\n  let content = readFileSync(filePath, 'utf-8');\n  const originalContent = content;\n\n  // Pattern to match hardcoded home paths like /home/username or /Users/username\n  // Replace with ${HOME} which docker-compose expands\n  const homePatterns = [\n    /\\/home\\/[a-zA-Z0-9_-]+\\//g,      // Linux: /home/username/\n    /\\/Users\\/[a-zA-Z0-9_-]+\\//g,     // macOS: /Users/username/\n  ];\n\n  for (const pattern of homePatterns) {\n    content = content.replace(pattern, '${HOME}/');\n  }\n\n  if (content !== originalContent) {\n    writeFileSync(filePath, content, 'utf-8');\n  }\n}\n\n/**\n * Validate feature name (alphanumeric and hyphens only)\n */\nfunction validateFeatureName(name: string): boolean {\n  return /^[a-zA-Z0-9-]+$/.test(name);\n}\n\n/**\n * Create a git worktree\n * @param repoPath Path to the source git repository\n * @param targetPath Where to create the worktree\n * @param branchName Name of the feature branch to create/checkout\n * @param defaultBranch Base branch to create new branches from (default: 'main')\n */\nasync function createWorktree(\n  repoPath: string,\n  targetPath: string,\n  branchName: string,\n  defaultBranch: string = 'main'\n): Promise<{ success: boolean; message: string }> {\n  try {\n    // Fetch latest from origin\n    await execAsync('git fetch origin', { cwd: repoPath });\n\n    // Prune stale worktree entries (e.g., from deleted workspaces)\n    await execAsync('git worktree prune', { cwd: repoPath });\n\n    // Check if branch exists locally or remotely\n    const { stdout: localBranches } = await execAsync('git branch --list', { cwd: repoPath });\n    const { stdout: remoteBranches } = await execAsync('git branch -r --list', { cwd: repoPath });\n\n    const branchExists =\n      localBranches.includes(branchName) ||\n      remoteBranches.includes(`origin/${branchName}`);\n\n    if (branchExists) {\n      await execAsync(`git worktree add \"${targetPath}\" \"${branchName}\"`, { cwd: repoPath });\n    } else {\n      // Create new branch from the configured default branch\n      await execAsync(`git worktree add \"${targetPath}\" -b \"${branchName}\" \"${defaultBranch}\"`, { cwd: repoPath });\n    }\n\n    // Configure beads role so agents don't get \"beads.role not configured\" warnings\n    await execAsync('git config beads.role agent', { cwd: targetPath }).catch(() => {});\n\n    return { success: true, message: `Created worktree at ${targetPath}` };\n  } catch (error) {\n    return { success: false, message: `Failed to create worktree: ${error}` };\n  }\n}\n\n/**\n * Remove a git worktree\n */\nasync function removeWorktree(\n  repoPath: string,\n  targetPath: string,\n  branchName: string\n): Promise<{ success: boolean; message: string }> {\n  try {\n    // Remove worktree\n    await execAsync(`git worktree remove \"${targetPath}\" --force`, { cwd: repoPath }).catch(() => {});\n\n    // Optionally delete the branch\n    await execAsync(`git branch -D \"${branchName}\"`, { cwd: repoPath }).catch(() => {});\n\n    return { success: true, message: `Removed worktree at ${targetPath}` };\n  } catch (error) {\n    return { success: false, message: `Failed to remove worktree: ${error}` };\n  }\n}\n\n// DNS functions (addWsl2HostEntry, removeWsl2HostEntry, syncDnsToWindows)\n// are now in src/lib/dns.ts and imported above\n\n/**\n * Assign a port from a range\n */\nfunction assignPort(\n  portFile: string,\n  featureFolder: string,\n  range: [number, number]\n): number {\n  // Ensure port file exists\n  if (!existsSync(portFile)) {\n    mkdirSync(dirname(portFile), { recursive: true });\n    writeFileSync(portFile, '');\n  }\n\n  const content = readFileSync(portFile, 'utf-8');\n  const lines = content.split('\\n').filter(Boolean);\n\n  // Check if already assigned\n  for (const line of lines) {\n    const [folder, port] = line.split(':');\n    if (folder === featureFolder) {\n      return parseInt(port, 10);\n    }\n  }\n\n  // Find next available port\n  const usedPorts = new Set(lines.map(l => parseInt(l.split(':')[1], 10)));\n  for (let port = range[0]; port <= range[1]; port++) {\n    if (!usedPorts.has(port)) {\n      writeFileSync(portFile, content + (content.endsWith('\\n') ? '' : '\\n') + `${featureFolder}:${port}\\n`);\n      return port;\n    }\n  }\n\n  throw new Error(`No available ports in range ${range[0]}-${range[1]}`);\n}\n\n/**\n * Release a port assignment\n */\nfunction releasePort(portFile: string, featureFolder: string): boolean {\n  try {\n    if (!existsSync(portFile)) return true;\n\n    let content = readFileSync(portFile, 'utf-8');\n    const lines = content.split('\\n').filter(line => !line.startsWith(`${featureFolder}:`));\n    writeFileSync(portFile, lines.join('\\n'));\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Process template files with placeholder replacement\n */\nfunction processTemplates(\n  templateDir: string,\n  targetDir: string,\n  placeholders: TemplatePlaceholders,\n  templates?: Array<{ source: string; target: string }>\n): string[] {\n  const steps: string[] = [];\n\n  if (!existsSync(templateDir)) {\n    return steps;\n  }\n\n  // If specific templates are defined, process those\n  if (templates && templates.length > 0) {\n    for (const { source, target } of templates) {\n      const sourcePath = join(templateDir, source);\n      const targetPath = join(targetDir, target);\n\n      if (existsSync(sourcePath)) {\n        const content = readFileSync(sourcePath, 'utf-8');\n        const processed = replacePlaceholders(content, placeholders);\n        mkdirSync(dirname(targetPath), { recursive: true });\n        writeFileSync(targetPath, processed);\n        steps.push(`Processed template: ${source} -> ${target}`);\n      }\n    }\n  } else {\n    // Process all .template files\n    const files = readdirSync(templateDir);\n    for (const file of files) {\n      if (file.endsWith('.template')) {\n        const sourcePath = join(templateDir, file);\n        const targetPath = join(targetDir, file.replace('.template', ''));\n\n        const content = readFileSync(sourcePath, 'utf-8');\n        const processed = replacePlaceholders(content, placeholders);\n        writeFileSync(targetPath, processed);\n        // Shell scripts need execute permission\n        const targetName = file.replace('.template', '');\n        if (targetName === 'dev' || targetName.endsWith('.sh')) {\n          chmodSync(targetPath, 0o755);\n        }\n        steps.push(`Processed template: ${file}`);\n      }\n    }\n  }\n\n  return steps;\n}\n\n/**\n * @deprecated Use copyProjectTemplateDirs instead. Kept for non-.claude paths.\n */\nfunction createSymlinks(\n  sourceDir: string,\n  targetDir: string,\n  symlinks: string[]\n): string[] {\n  const steps: string[] = [];\n\n  for (const symlink of symlinks) {\n    const sourcePath = join(sourceDir, symlink);\n    const targetPath = join(targetDir, symlink);\n\n    if (existsSync(sourcePath)) {\n      mkdirSync(dirname(targetPath), { recursive: true });\n      try {\n        symlinkSync(sourcePath, targetPath);\n        steps.push(`Created symlink: ${symlink}`);\n      } catch {\n        // Symlink might already exist\n      }\n    }\n  }\n\n  return steps;\n}\n\n/**\n * Copy project template directories into workspace (replaces symlinks).\n * Recursively copies all files from each source directory.\n */\nconst TEXT_EXTENSIONS = new Set([\n  '.md', '.sh', '.yml', '.yaml', '.json', '.ts', '.js', '.env', '.txt', '.toml', '.template',\n]);\n\nfunction copyProjectTemplateDirs(\n  sourceDir: string,\n  targetDir: string,\n  dirs: string[],\n  placeholders?: TemplatePlaceholders\n): string[] {\n  const steps: string[] = [];\n\n  for (const dir of dirs) {\n    const sourcePath = join(sourceDir, dir);\n    const targetPath = join(targetDir, dir);\n\n    if (!existsSync(sourcePath)) continue;\n\n    // Recursively copy all files, applying placeholder substitution to text files\n    function copyDir(src: string, dest: string): number {\n      let count = 0;\n      mkdirSync(dest, { recursive: true });\n      const entries = readdirSync(src, { withFileTypes: true });\n      for (const entry of entries) {\n        const srcEntry = join(src, entry.name);\n        const destEntry = join(dest, entry.name);\n        if (entry.isDirectory()) {\n          count += copyDir(srcEntry, destEntry);\n        } else if (entry.isFile()) {\n          const ext = extname(entry.name).toLowerCase();\n          if (placeholders && TEXT_EXTENSIONS.has(ext)) {\n            const content = readFileSync(srcEntry, 'utf-8');\n            writeFileSync(destEntry, replacePlaceholders(content, placeholders));\n          } else {\n            copyFileSync(srcEntry, destEntry);\n          }\n          count++;\n        }\n      }\n      return count;\n    }\n\n    const count = copyDir(sourcePath, targetPath);\n    steps.push(`Copied ${count} files from project template: ${dir}`);\n  }\n\n  return steps;\n}\n\n/**\n * Create a workspace\n */\nexport async function createWorkspace(options: WorkspaceCreateOptions): Promise<WorkspaceCreateResult> {\n  const { projectConfig, featureName, startDocker, dryRun } = options;\n  const result: WorkspaceCreateResult = {\n    success: true,\n    workspacePath: '',\n    errors: [],\n    steps: [],\n  };\n\n  // Validate feature name\n  if (!validateFeatureName(featureName)) {\n    result.success = false;\n    result.errors.push('Invalid feature name. Use alphanumeric and hyphens only.');\n    return result;\n  }\n\n  // Reject 'main' as feature name\n  if (featureName === 'main') {\n    result.success = false;\n    result.errors.push('Cannot create workspace for \"main\". Use base repos directly.');\n    return result;\n  }\n\n  const workspaceConfig = projectConfig.workspace || getDefaultWorkspaceConfig();\n  const workspacesDir = join(projectConfig.path, workspaceConfig.workspaces_dir || 'workspaces');\n  const featureFolder = `feature-${featureName}`;\n  const workspacePath = join(workspacesDir, featureFolder);\n  result.workspacePath = workspacePath;\n\n  // Check if workspace already exists\n  if (existsSync(workspacePath)) {\n    result.success = false;\n    result.errors.push(`Workspace already exists at ${workspacePath}`);\n    return result;\n  }\n\n  if (dryRun) {\n    result.steps.push('[DRY RUN] Would create workspace at: ' + workspacePath);\n    return result;\n  }\n\n  // Create placeholders\n  const placeholders = createPlaceholders(projectConfig, featureName, workspacePath);\n\n  // Create workspace directory\n  mkdirSync(workspacePath, { recursive: true });\n  result.steps.push('Created workspace directory');\n\n  // Handle polyrepo vs monorepo\n  if (workspaceConfig.type === 'polyrepo' && workspaceConfig.repos) {\n    // Create worktrees for each repo\n    for (const repo of workspaceConfig.repos) {\n      // Resolve symlinks to get the actual git repository path\n      // (e.g., myn/frontend -> ../frontend needs to resolve to actual path)\n      const rawRepoPath = join(projectConfig.path, repo.path);\n      const repoPath = existsSync(rawRepoPath) ? realpathSync(rawRepoPath) : rawRepoPath;\n      const targetPath = join(workspacePath, repo.name);\n      const branchPrefix = repo.branch_prefix || 'feature/';\n      const branchName = `${branchPrefix}${featureName}`;\n      // Per-repo default_branch overrides workspace-level, falls back to 'main'\n      const defaultBranch = repo.default_branch || workspaceConfig.default_branch || 'main';\n\n      const worktreeResult = await createWorktree(repoPath, targetPath, branchName, defaultBranch);\n      if (worktreeResult.success) {\n        result.steps.push(`Created worktree for ${repo.name}: ${branchName} (from ${defaultBranch})`);\n      } else {\n        result.errors.push(`${repo.name}: ${worktreeResult.message}`);\n        result.success = false; // Fail the entire workspace creation if any worktree fails\n      }\n    }\n  } else {\n    // Monorepo: create single worktree\n    const branchName = `feature/${featureName}`;\n    const defaultBranch = workspaceConfig.default_branch || 'main';\n    const worktreeResult = await createWorktree(projectConfig.path, workspacePath, branchName, defaultBranch);\n    if (worktreeResult.success) {\n      result.steps.push(`Created worktree: ${branchName} (from ${defaultBranch})`);\n    } else {\n      result.errors.push(worktreeResult.message);\n      result.success = false; // Fail the entire workspace creation if worktree fails\n    }\n  }\n\n  // Remove stale .planning/ directory inherited from main branch.\n  // This contains STATE.md and other planning artifacts from a PREVIOUS issue.\n  // If left in place, the new agent reads it and works on the wrong issue.\n  // SAFETY: resolve() to absolute path and verify it's under a known workspace prefix\n  // to prevent path traversal from ever reaching rmSync.\n  const resolvedWorkspace = resolve(workspacePath);\n  const resolvedPlanning = resolve(resolvedWorkspace, '.planning');\n  const isUnderWorkspacesDir = resolvedWorkspace.match(/\\/workspaces\\/feature-[a-z0-9-]+$/);\n  if (\n    isUnderWorkspacesDir &&\n    resolvedPlanning === join(resolvedWorkspace, '.planning') &&\n    existsSync(join(resolvedWorkspace, '.git')) &&\n    existsSync(resolvedPlanning)\n  ) {\n    rmSync(resolvedPlanning, { recursive: true, force: true });\n    result.steps.push('Removed stale .planning/ directory from previous issue');\n  }\n\n  // Sanitize any docker-compose files in the workspace to use platform-agnostic paths\n  // This handles files inherited from worktrees that may have hardcoded home paths\n  const devcontainerDir = join(workspacePath, '.devcontainer');\n  if (existsSync(devcontainerDir)) {\n    const composeFiles = readdirSync(devcontainerDir)\n      .filter(f => f.includes('compose') && (f.endsWith('.yml') || f.endsWith('.yaml')));\n    for (const composeFile of composeFiles) {\n      sanitizeComposeFile(join(devcontainerDir, composeFile));\n    }\n    if (composeFiles.length > 0) {\n      result.steps.push(`Sanitized ${composeFiles.length} compose file(s) for platform compatibility`);\n    }\n  }\n\n  // Setup TLDR code analysis for workspace (after worktree creation to ensure directory is ready)\n  try {\n    // Check if python3 is available\n    await execAsync('python3 --version');\n    const venvPath = join(workspacePath, '.venv');\n    const tldrBin = join(venvPath, 'bin', 'tldr');\n\n    // Check if main branch already has a working venv with llm-tldr\n    const mainVenvTldr = join(projectConfig.path, '.venv', 'bin', 'tldr');\n    const mainVenvExists = existsSync(mainVenvTldr);\n\n    if (mainVenvExists) {\n      // Copy the entire venv from main — faster than pip install (seconds vs 30s+)\n      await execAsync(`cp -a \"${join(projectConfig.path, '.venv')}\" \"${venvPath}\"`);\n      result.steps.push('Copied Python venv from main branch');\n    } else {\n      // Create fresh venv and install llm-tldr\n      await execAsync(`python3 -m venv \"${venvPath}\"`, { cwd: workspacePath });\n      const pipPath = join(venvPath, 'bin', 'pip');\n      await execAsync(`\"${pipPath}\" install llm-tldr`, { cwd: workspacePath, timeout: 120000 });\n      result.steps.push('Created Python venv and installed llm-tldr');\n\n      // Apply .tsx/.jsx support patch (upstream llm-tldr only checks .ts)\n      const patchScript = join(projectConfig.path, 'scripts', 'patches', 'llm-tldr-tsx-support.py');\n      if (existsSync(patchScript)) {\n        await execAsync(`python3 \"${patchScript}\" \"${venvPath}\"`);\n        result.steps.push('Applied llm-tldr .tsx/.jsx patch');\n      }\n    }\n\n    // Verify tldr binary exists after setup\n    if (!existsSync(tldrBin)) {\n      result.steps.push('TLDR setup incomplete: tldr binary not found after venv creation');\n    } else {\n      // Copy .tldr index from main branch if it exists\n      const mainTldrDir = join(projectConfig.path, '.tldr');\n      const workspaceTldrDir = join(workspacePath, '.tldr');\n\n      if (existsSync(mainTldrDir)) {\n        await execAsync(`cp -r \"${mainTldrDir}\" \"${workspaceTldrDir}\"`);\n        result.steps.push('Copied TLDR index from main branch');\n      }\n\n      // Start TLDR daemon for this workspace\n      const { getTldrDaemonService } = await import('./tldr-daemon.js');\n      const tldrService = getTldrDaemonService(workspacePath, venvPath);\n      await tldrService.start(true);\n      result.steps.push('Started TLDR daemon');\n\n      // Warm the index in the background — ensures workspaces always have a working index\n      // even when the main branch cache was empty (nothing to copy)\n      try {\n        await tldrService.warm(true);  // background=true: non-blocking\n        result.steps.push('TLDR index warm initiated (background)');\n      } catch {\n        // Non-fatal — daemon may not support warm yet\n      }\n    }\n  } catch (error: any) {\n    // TLDR setup is optional — don't fail workspace creation, but log clearly\n    if (error.message?.includes('python3')) {\n      result.steps.push('Skipped TLDR setup (python3 not available)');\n    } else {\n      console.warn(`⚠ TLDR setup failed: ${error.message}`);\n      result.steps.push(`TLDR setup failed: ${error.message}`);\n    }\n  }\n\n  // Configure DNS\n  if (workspaceConfig.dns) {\n    const dnsMethod = workspaceConfig.dns.sync_method || 'wsl2hosts';\n    for (const entryPattern of workspaceConfig.dns.entries) {\n      const hostname = replacePlaceholders(entryPattern, placeholders);\n\n      if (addDnsEntry(dnsMethod, hostname)) {\n        result.steps.push(`Added DNS entry: ${hostname} (${dnsMethod})`);\n      }\n    }\n\n    // Sync to Windows if using wsl2hosts method\n    if (dnsMethod === 'wsl2hosts') {\n      const synced = await syncDnsToWindows();\n      if (synced) {\n        result.steps.push('Synced DNS to Windows hosts file');\n      }\n    }\n  }\n\n  // Assign ports\n  if (workspaceConfig.ports) {\n    for (const [portName, portConfig] of Object.entries(workspaceConfig.ports)) {\n      const portFile = join(projectConfig.path, `.${portName}-ports`);\n      try {\n        const port = assignPort(portFile, featureFolder, portConfig.range);\n        result.steps.push(`Assigned ${portName} port: ${port}`);\n        // Add to placeholders for use in templates\n        (placeholders as any)[`${portName.toUpperCase()}_PORT`] = String(port);\n      } catch (error) {\n        result.errors.push(`Failed to assign ${portName} port: ${error}`);\n      }\n    }\n  }\n\n  // Install base Panopticon skills/agents/rules from cache\n  const mergeResult = mergeSkillsIntoWorkspace(workspacePath);\n  const mergeTotal = mergeResult.added.length + mergeResult.updated.length;\n  if (mergeTotal > 0) {\n    result.steps.push(`Installed ${mergeTotal} Panopticon files (${mergeResult.added.length} new, ${mergeResult.updated.length} updated)`);\n  }\n\n  // Process agent templates (project template overlay — wins over Panopticon base)\n  if (workspaceConfig.agent?.template_dir) {\n    const templateDir = join(projectConfig.path, workspaceConfig.agent.template_dir);\n\n    // Process template files\n    const templateSteps = processTemplates(\n      templateDir,\n      workspacePath,\n      placeholders,\n      workspaceConfig.agent.templates\n    );\n    result.steps.push(...templateSteps);\n\n    // Copy .claude/ directories from project template (copy_dirs replaces legacy symlinks)\n    const dirsToSync = workspaceConfig.agent.copy_dirs || workspaceConfig.agent.symlinks;\n    if (dirsToSync) {\n      const copySteps = copyProjectTemplateDirs(templateDir, workspacePath, dirsToSync, placeholders);\n      result.steps.push(...copySteps);\n    }\n  }\n\n  // Generate .env file\n  if (workspaceConfig.env?.template) {\n    const envContent = replacePlaceholders(workspaceConfig.env.template, placeholders);\n    writeFileSync(join(workspacePath, '.env'), envContent);\n    result.steps.push('Created .env file');\n  }\n\n  // Process Docker compose templates\n  if (workspaceConfig.docker?.compose_template) {\n    const templateDir = join(projectConfig.path, workspaceConfig.docker.compose_template);\n    const devcontainerDir = join(workspacePath, '.devcontainer');\n    mkdirSync(devcontainerDir, { recursive: true });\n\n    const templateSteps = processTemplates(templateDir, devcontainerDir, placeholders);\n    result.steps.push(...templateSteps);\n\n    // Copy non-template files (like Dockerfile)\n    if (existsSync(templateDir)) {\n      const files = readdirSync(templateDir);\n      for (const file of files) {\n        if (!file.endsWith('.template')) {\n          const sourcePath = join(templateDir, file);\n          const targetPath = join(devcontainerDir, file);\n          copyFileSync(sourcePath, targetPath);\n        }\n      }\n    }\n\n    // Sanitize docker-compose files to use platform-agnostic paths\n    // This fixes hardcoded /home/username or /Users/username paths\n    const composeFiles = readdirSync(devcontainerDir)\n      .filter(f => f.includes('compose') && (f.endsWith('.yml') || f.endsWith('.yaml')));\n    for (const composeFile of composeFiles) {\n      sanitizeComposeFile(join(devcontainerDir, composeFile));\n    }\n    if (composeFiles.length > 0) {\n      result.steps.push(`Sanitized ${composeFiles.length} compose file(s) for platform compatibility`);\n    }\n\n    // Create ./dev symlink at workspace root pointing to .devcontainer/dev\n    // Symlink keeps changes in sync - editing ./dev updates .devcontainer/dev\n    const devScriptInContainer = join(devcontainerDir, 'dev');\n    const devScriptAtRoot = join(workspacePath, 'dev');\n    if (existsSync(devScriptInContainer) && !existsSync(devScriptAtRoot)) {\n      try {\n        symlinkSync('.devcontainer/dev', devScriptAtRoot);\n        chmodSync(devScriptInContainer, 0o755); // Make executable\n        result.steps.push('Created ./dev symlink');\n      } catch (error) {\n        result.errors.push(`Failed to create ./dev symlink: ${error}`);\n      }\n    }\n  }\n\n  // Note: Beads initialization is handled by the calling command (workspace.ts)\n  // With beads v0.47.1+, worktrees use shared database with labels for isolation\n  // The workspace.ts command creates a bead with workspace:issue-id label\n\n  // Set up Cloudflare tunnel for external access (before Docker so containers can use tunnel URLs)\n  if (workspaceConfig.tunnel) {\n    const tunnelResult = await addTunnelIngress(workspaceConfig.tunnel, placeholders);\n    result.steps.push(...tunnelResult.steps);\n    if (!tunnelResult.success) {\n      result.errors.push('Tunnel setup had failures (see steps for details)');\n    }\n  }\n\n  // Create Hume EVI config and write env file for Docker (before Docker so containers pick up the config ID)\n  if (workspaceConfig.hume) {\n    const humeResult = await createHumeConfig(workspaceConfig.hume, placeholders);\n    result.steps.push(...humeResult.steps);\n    if (humeResult.configId) {\n      writeFileSync(\n        join(workspacePath, '.hume-config'),\n        `HUME_CONFIG_ID=${humeResult.configId}\\nVITE_HUME_CONFIG_ID=${humeResult.configId}\\n`,\n      );\n      result.steps.push('Wrote .hume-config with Hume EVI config ID');\n    }\n    if (!humeResult.success) {\n      result.errors.push('Hume EVI config setup had failures (see steps for details)');\n    }\n  }\n\n  // Start Docker containers if requested\n  if (startDocker) {\n    // Check for Traefik\n    if (workspaceConfig.docker?.traefik) {\n      // Always use the installed Traefik location (~/.panopticon/traefik/), not the\n      // template source in projects.yaml. The template is copied to ~/.panopticon/traefik/\n      // during `pan install`, and the installed copy has the correct volume mounts\n      // (dynamic configs, certs) relative to ~/.panopticon/traefik/.\n      const traefikPath = join(homedir(), '.panopticon', 'traefik', 'docker-compose.yml');\n      if (existsSync(traefikPath)) {\n        try {\n          await execAsync(`docker compose -f \"${traefikPath}\" up -d`, { cwd: join(homedir(), '.panopticon', 'traefik') });\n          result.steps.push('Started Traefik');\n        } catch (error: any) {\n          const msg = error?.message || String(error);\n          if (msg.includes('port is already allocated') || msg.includes('address already in use')) {\n            // Traefik (or another reverse proxy) is already running — not an error\n            result.steps.push('Traefik already running (port in use)');\n          } else {\n            result.errors.push(`Failed to start Traefik: ${error}`);\n          }\n        }\n      }\n    }\n\n    // Start workspace containers\n    const composeLocations = [\n      join(workspacePath, 'docker-compose.yml'),\n      join(workspacePath, 'docker-compose.yaml'),\n      join(workspacePath, '.devcontainer', 'docker-compose.yml'),\n      join(workspacePath, '.devcontainer', 'docker-compose.devcontainer.yml'),\n    ];\n\n    for (const composePath of composeLocations) {\n      if (existsSync(composePath)) {\n        try {\n          // Don't pass -p: the compose file's `name:` field is the authority.\n          // Passing -p with a different value creates a second Docker project\n          // on container restart, splitting services onto separate networks.\n          await execAsync(`docker compose -f \"${composePath}\" up -d --build`, { cwd: dirname(composePath), timeout: 300000 });\n          result.steps.push(`Started containers from ${basename(composePath)}`);\n        } catch (error) {\n          result.errors.push(`Failed to start containers: ${error}`);\n        }\n        break;\n      }\n    }\n  }\n\n  // Pre-trust workspace directory in Claude Code so agents don't get the trust prompt\n  try {\n    preTrustDirectory(workspacePath);\n    result.steps.push('Pre-trusted workspace in Claude Code');\n  } catch {\n    // Non-fatal — agent can still work, user will just see trust prompt\n  }\n\n  result.success = result.errors.length === 0;\n  return result;\n}\n\n/**\n * Pre-register a directory as trusted in Claude Code's ~/.claude.json.\n * This prevents the \"Quick safety check: Is this a project you created or one you trust?\" prompt\n * when agents are spawned in dynamically-created workspace directories.\n */\nexport function preTrustDirectory(dirPath: string): void {\n  const claudeJsonPath = join(homedir(), '.claude.json');\n  if (!existsSync(claudeJsonPath)) return;\n\n  const data = JSON.parse(readFileSync(claudeJsonPath, 'utf8'));\n  if (!data.projects) data.projects = {};\n\n  // Only add if not already present\n  if (data.projects[dirPath]) {\n    if (!data.projects[dirPath].hasTrustDialogAccepted) {\n      data.projects[dirPath].hasTrustDialogAccepted = true;\n      writeFileSync(claudeJsonPath, JSON.stringify(data, null, 2), 'utf8');\n    }\n    return;\n  }\n\n  data.projects[dirPath] = {\n    allowedTools: [],\n    mcpContextUris: [],\n    mcpServers: {},\n    enabledMcpjsonServers: [],\n    disabledMcpjsonServers: [],\n    hasTrustDialogAccepted: true,\n    projectOnboardingSeenCount: 0,\n    hasClaudeMdExternalIncludesApproved: false,\n    hasClaudeMdExternalIncludesWarningShown: false,\n  };\n\n  writeFileSync(claudeJsonPath, JSON.stringify(data, null, 2), 'utf8');\n}\n\nexport interface WorkspaceRemoveOptions {\n  projectConfig: ProjectConfig;\n  featureName: string;\n  dryRun?: boolean;\n}\n\nexport interface WorkspaceRemoveResult {\n  success: boolean;\n  errors: string[];\n  steps: string[];\n}\n\n/**\n * Result of Docker container cleanup for a workspace.\n */\nexport interface DockerCleanupResult {\n  /** Whether compose files were found (containers may or may not have been running) */\n  containersFound: boolean;\n  /** Human-readable log of cleanup steps taken */\n  steps: string[];\n}\n\n/**\n * Stop Docker containers and clean up Docker-created files for a workspace.\n *\n * Extracted as a standalone function so it can be used by:\n * - removeWorkspace() during normal workspace removal\n * - deep-wipe endpoint for complete issue cleanup\n * - workspace-migrate for pre-migration cleanup\n *\n * Failures are logged but never thrown — callers should not fail if Docker is unavailable.\n */\nexport async function stopWorkspaceDocker(\n  workspacePath: string,\n  projectName: string,\n  featureName: string,\n): Promise<DockerCleanupResult> {\n  const result: DockerCleanupResult = {\n    containersFound: false,\n    steps: [],\n  };\n\n  // Find all compose files in devcontainer directory (some projects use multiple)\n  const devcontainerDir = join(workspacePath, '.devcontainer');\n  const composeFiles: string[] = [];\n\n  if (existsSync(devcontainerDir)) {\n    const possibleFiles = [\n      'docker-compose.devcontainer.yml',\n      'docker-compose.yml',\n      'compose.yml',\n      'compose.infra.yml',\n      'compose.override.yml',\n    ];\n    for (const file of possibleFiles) {\n      const fullPath = join(devcontainerDir, file);\n      if (existsSync(fullPath)) {\n        composeFiles.push(fullPath);\n      }\n    }\n  }\n\n  // Fallback: check for compose file in workspace root\n  if (composeFiles.length === 0) {\n    const rootCompose = join(workspacePath, 'docker-compose.yml');\n    if (existsSync(rootCompose)) {\n      composeFiles.push(rootCompose);\n    }\n  }\n\n  if (composeFiles.length > 0) {\n    result.containersFound = true;\n    try {\n      const fileFlags = composeFiles.map(f => `-f \"${f}\"`).join(' ');\n      const cwd = existsSync(devcontainerDir) ? devcontainerDir : workspacePath;\n\n      // Derive compose project name from the dev script (same logic as dashboard)\n      // or fall back to \"{projectName}-feature-{featureName}\" convention.\n      let composeProjectName = `${projectName}-feature-${featureName}`;\n      const devScriptPaths = [\n        join(workspacePath, '.devcontainer', 'dev'),\n        join(workspacePath, 'dev'),\n      ];\n      for (const devPath of devScriptPaths) {\n        try {\n          if (existsSync(devPath)) {\n            const content = readFileSync(devPath, 'utf-8');\n            const match = content.match(/COMPOSE_PROJECT_NAME=\"([^$\"]*)\\$\\{FEATURE_FOLDER\\}\"/);\n            if (match) {\n              composeProjectName = `${match[1]}feature-${featureName}`;\n              break;\n            }\n            const literalMatch = content.match(/COMPOSE_PROJECT_NAME=\"([^\"]+)\"/);\n            if (literalMatch) {\n              composeProjectName = literalMatch[1];\n              break;\n            }\n          }\n        } catch {\n          // Fall through to default\n        }\n      }\n\n      await execAsync(`docker compose ${fileFlags} -p \"${composeProjectName}\" down -v --remove-orphans`, {\n        cwd,\n        timeout: 60000,\n      });\n      result.steps.push(`Stopped Docker containers (${composeFiles.length} compose files)`);\n    } catch (error: any) {\n      // Log but don't fail — containers might not be running\n      result.steps.push(`Docker cleanup attempted (${error.message?.split('\\n')[0] || 'containers may not be running'})`);\n    }\n  }\n\n  // Clean up Docker-created files (root-owned in containers)\n  try {\n    await execAsync(\n      `docker run --rm -v \"${workspacePath}:/workspace\" alpine sh -c \"find /workspace -user root -delete 2>&1 | tail -100 || true\"`,\n      { timeout: 30000, maxBuffer: 10 * 1024 * 1024 }\n    );\n    result.steps.push('Cleaned up Docker-created files');\n  } catch {\n    // Alpine container might not be available\n  }\n\n  return result;\n}\n\n/**\n * Remove a workspace\n */\nexport async function removeWorkspace(options: WorkspaceRemoveOptions): Promise<WorkspaceRemoveResult> {\n  const { projectConfig, featureName, dryRun } = options;\n  const result: WorkspaceRemoveResult = {\n    success: true,\n    errors: [],\n    steps: [],\n  };\n\n  const workspaceConfig = projectConfig.workspace || getDefaultWorkspaceConfig();\n  const workspacesDir = join(projectConfig.path, workspaceConfig.workspaces_dir || 'workspaces');\n  const featureFolder = `feature-${featureName}`;\n  const workspacePath = join(workspacesDir, featureFolder);\n\n  if (!existsSync(workspacePath)) {\n    result.success = false;\n    result.errors.push(`Workspace not found at ${workspacePath}`);\n    return result;\n  }\n\n  if (dryRun) {\n    result.steps.push('[DRY RUN] Would remove workspace at: ' + workspacePath);\n    return result;\n  }\n\n  // Stop TLDR daemon for workspace (if it exists)\n  const venvPath = join(workspacePath, '.venv');\n  if (existsSync(venvPath)) {\n    try {\n      const { getTldrDaemonService } = await import('./tldr-daemon.js');\n      const tldrService = getTldrDaemonService(workspacePath, venvPath);\n      await tldrService.stop();\n      result.steps.push('Stopped TLDR daemon');\n    } catch (error: any) {\n      // Non-fatal - daemon may not be running\n      console.warn(`⚠ Failed to stop TLDR daemon: ${error?.message}`);\n    }\n  }\n\n  // Stop Docker containers and clean up Docker-created files\n  const dockerResult = await stopWorkspaceDocker(workspacePath, projectConfig.name || 'workspace', featureName);\n  result.steps.push(...dockerResult.steps);\n\n  // Remove worktrees\n  if (workspaceConfig.type === 'polyrepo' && workspaceConfig.repos) {\n    for (const repo of workspaceConfig.repos) {\n      const repoPath = join(projectConfig.path, repo.path);\n      const targetPath = join(workspacePath, repo.name);\n      const branchPrefix = repo.branch_prefix || 'feature/';\n      const branchName = `${branchPrefix}${featureName}`;\n\n      const worktreeResult = await removeWorktree(repoPath, targetPath, branchName);\n      if (worktreeResult.success) {\n        result.steps.push(`Removed worktree for ${repo.name}`);\n      } else {\n        result.errors.push(worktreeResult.message);\n      }\n    }\n  } else {\n    // Monorepo: remove single worktree\n    const branchName = `feature/${featureName}`;\n    const worktreeResult = await removeWorktree(projectConfig.path, workspacePath, branchName);\n    if (worktreeResult.success) {\n      result.steps.push('Removed worktree');\n    } else {\n      result.errors.push(worktreeResult.message);\n    }\n  }\n\n  // Remove DNS entries\n  if (workspaceConfig.dns) {\n    const placeholders = createPlaceholders(projectConfig, featureName, workspacePath);\n\n    const dnsMethod = workspaceConfig.dns.sync_method || 'wsl2hosts';\n    for (const entryPattern of workspaceConfig.dns.entries) {\n      const hostname = replacePlaceholders(entryPattern, placeholders);\n      if (removeDnsEntry(dnsMethod, hostname)) {\n        result.steps.push(`Removed DNS entry: ${hostname}`);\n      }\n    }\n  }\n\n  // Remove Cloudflare tunnel entries\n  if (workspaceConfig.tunnel) {\n    const placeholders = createPlaceholders(projectConfig, featureName, workspacePath);\n    const tunnelResult = await removeTunnelIngress(workspaceConfig.tunnel, placeholders);\n    result.steps.push(...tunnelResult.steps);\n  }\n\n  // Remove Hume EVI config\n  if (workspaceConfig.hume) {\n    const placeholders = createPlaceholders(projectConfig, featureName, workspacePath);\n    const humeResult = await deleteHumeConfig(workspaceConfig.hume, placeholders);\n    result.steps.push(...humeResult.steps);\n  }\n\n  // Release ports\n  if (workspaceConfig.ports) {\n    for (const [portName] of Object.entries(workspaceConfig.ports)) {\n      const portFile = join(projectConfig.path, `.${portName}-ports`);\n      if (releasePort(portFile, featureFolder)) {\n        result.steps.push(`Released ${portName} port`);\n      }\n    }\n  }\n\n  // Remove workspace directory\n  try {\n    await execAsync(`rm -rf \"${workspacePath}\"`, { maxBuffer: 10 * 1024 * 1024 });\n    result.steps.push('Removed workspace directory');\n  } catch (error) {\n    result.errors.push(`Failed to remove workspace directory: ${error}`);\n  }\n\n  result.success = result.errors.length === 0;\n  return 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package/dist/{chunk-WEQW3EAT.js → chunk-F4XS2FQN.js}

@@ -2,7 +2,7 @@ import {
   stepFailed,
   stepOk,
   stepSkipped
-} from "./chunk-R4KPLLRB.js";
+} from "./chunk-SFX3BG6N.js";
 import {
   init_esm_shims
 } from "./chunk-ZHC57RCV.js";
@@ -15,6 +15,7 @@ var execAsync = promisify(exec);
 var EPHEMERAL_PLANNING_FILES = [
   ".planning/STATE.md",
   ".planning/PRD.md",
+  ".planning/WORKSPACE.md",
   ".planning/PLANNING_PROMPT.md",
   ".planning/PLANNING_PROMPT.md.archived",
   ".planning/.planning-complete"
@@ -75,4 +76,4 @@ async function cleanPlanningArtifacts(ctx) {
 export {
   cleanPlanningArtifacts
 };
-//# sourceMappingURL=chunk-WEQW3EAT.js.map
+//# sourceMappingURL=chunk-F4XS2FQN.js.map

package/dist/chunk-F4XS2FQN.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/lib/lifecycle/clean-planning.ts"],"sourcesContent":["/**\n * clean-planning — Remove ephemeral .planning/ artifacts from main after merge.\n *\n * After a feature branch merges to main, ephemeral planning files\n * (STATE.md, PRD.md, PLANNING_PROMPT.md, .planning-complete, feedback/)\n * land on main and pollute new workspaces that inherit them.\n *\n * This module removes those files from the git index and working tree\n * with a dedicated commit, so new workspaces start clean.\n *\n * Idempotent — if none of the target files are tracked, returns skipped.\n */\n\nimport { exec } from 'child_process';\nimport { promisify } from 'util';\nimport type { LifecycleContext, StepResult } from './types.js';\nimport { stepOk, stepSkipped, stepFailed } from './types.js';\n\nconst execAsync = promisify(exec);\n\n/** Ephemeral planning files to remove from main after merge */\nconst EPHEMERAL_PLANNING_FILES = [\n  '.planning/STATE.md',\n  '.planning/PRD.md',\n  '.planning/WORKSPACE.md',\n  '.planning/PLANNING_PROMPT.md',\n  '.planning/PLANNING_PROMPT.md.archived',\n  '.planning/.planning-complete',\n];\n\n/**\n * Remove ephemeral planning artifacts from main after a feature branch merge.\n *\n * Uses `git rm` to remove tracked files from both the index and working tree,\n * then commits the deletion. Untracked files are silently skipped.\n */\nexport async function cleanPlanningArtifacts(\n  ctx: LifecycleContext,\n): Promise<StepResult> {\n  const step = 'clean-planning';\n  const { issueId, projectPath } = ctx;\n\n  try {\n    // Build the list of files git is currently tracking in .planning/\n    // that match our ephemeral set. We include feedback/ glob separately.\n    let trackedFiles: string[] = [];\n\n    // Check individual ephemeral files\n    for (const file of EPHEMERAL_PLANNING_FILES) {\n      try {\n        const { stdout } = await execAsync(\n          `git ls-files -- ${file}`,\n          { cwd: projectPath, encoding: 'utf-8' },\n        );\n        if (stdout.trim()) {\n          trackedFiles.push(file);\n        }\n      } catch {\n        // git ls-files failure is non-fatal\n      }\n    }\n\n    // Check feedback/ directory\n    try {\n      const { stdout } = await execAsync(\n        `git ls-files -- .planning/feedback/`,\n        { cwd: projectPath, encoding: 'utf-8' },\n      );\n      if (stdout.trim()) {\n        trackedFiles.push('.planning/feedback/');\n      }\n    } catch {\n      // Non-fatal\n    }\n\n    if (trackedFiles.length === 0) {\n      return stepSkipped(step, ['No tracked ephemeral planning files found on main']);\n    }\n\n    // Remove tracked files from index and working tree\n    const fileArgs = trackedFiles.map(f => `\"${f}\"`).join(' ');\n    await execAsync(\n      `git rm -rf --ignore-unmatch ${fileArgs}`,\n      { cwd: projectPath, encoding: 'utf-8' },\n    );\n\n    // Check if anything was actually staged for deletion\n    try {\n      await execAsync('git diff --cached --quiet', { cwd: projectPath, encoding: 'utf-8' });\n      // Nothing staged — files may have already been removed\n      return stepSkipped(step, ['No staged deletions after git rm (already clean)']);\n    } catch {\n      // There are staged changes — commit them\n      await execAsync(\n        `git commit -m \"chore: remove ephemeral planning state after ${issueId} merge\"`,\n        { cwd: projectPath, encoding: 'utf-8' },\n      );\n    }\n\n    return stepOk(step, [\n      `Removed ${trackedFiles.length} ephemeral planning file(s) from main`,\n      `Files: ${trackedFiles.join(', ')}`,\n    ]);\n  } catch (err) {\n    return stepFailed(step, `Failed to clean planning artifacts: ${(err as Error).message}`);\n  }\n}\n"],"mappings":";;;;;;;;;;AAAA;AAaA,SAAS,YAAY;AACrB,SAAS,iBAAiB;AAI1B,IAAM,YAAY,UAAU,IAAI;AAGhC,IAAM,2BAA2B;AAAA,EAC/B;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACF;AAQA,eAAsB,uBACpB,KACqB;AACrB,QAAM,OAAO;AACb,QAAM,EAAE,SAAS,YAAY,IAAI;AAEjC,MAAI;AAGF,QAAI,eAAyB,CAAC;AAG9B,eAAW,QAAQ,0BAA0B;AAC3C,UAAI;AACF,cAAM,EAAE,OAAO,IAAI,MAAM;AAAA,UACvB,mBAAmB,IAAI;AAAA,UACvB,EAAE,KAAK,aAAa,UAAU,QAAQ;AAAA,QACxC;AACA,YAAI,OAAO,KAAK,GAAG;AACjB,uBAAa,KAAK,IAAI;AAAA,QACxB;AAAA,MACF,QAAQ;AAAA,MAER;AAAA,IACF;AAGA,QAAI;AACF,YAAM,EAAE,OAAO,IAAI,MAAM;AAAA,QACvB;AAAA,QACA,EAAE,KAAK,aAAa,UAAU,QAAQ;AAAA,MACxC;AACA,UAAI,OAAO,KAAK,GAAG;AACjB,qBAAa,KAAK,qBAAqB;AAAA,MACzC;AAAA,IACF,QAAQ;AAAA,IAER;AAEA,QAAI,aAAa,WAAW,GAAG;AAC7B,aAAO,YAAY,MAAM,CAAC,mDAAmD,CAAC;AAAA,IAChF;AAGA,UAAM,WAAW,aAAa,IAAI,OAAK,IAAI,CAAC,GAAG,EAAE,KAAK,GAAG;AACzD,UAAM;AAAA,MACJ,+BAA+B,QAAQ;AAAA,MACvC,EAAE,KAAK,aAAa,UAAU,QAAQ;AAAA,IACxC;AAGA,QAAI;AACF,YAAM,UAAU,6BAA6B,EAAE,KAAK,aAAa,UAAU,QAAQ,CAAC;AAEpF,aAAO,YAAY,MAAM,CAAC,kDAAkD,CAAC;AAAA,IAC/E,QAAQ;AAEN,YAAM;AAAA,QACJ,+DAA+D,OAAO;AAAA,QACtE,EAAE,KAAK,aAAa,UAAU,QAAQ;AAAA,MACxC;AAAA,IACF;AAEA,WAAO,OAAO,MAAM;AAAA,MAClB,WAAW,aAAa,MAAM;AAAA,MAC9B,UAAU,aAAa,KAAK,IAAI,CAAC;AAAA,IACnC,CAAC;AAAA,EACH,SAAS,KAAK;AACZ,WAAO,WAAW,MAAM,uCAAwC,IAAc,OAAO,EAAE;AAAA,EACzF;AACF;","names":[]}

package/dist/{chunk-OJF4QS3S.js → chunk-GIW2TUWI.js}

@@ -3,7 +3,7 @@ import {
   stepFailed,
   stepOk,
   stepSkipped
-} from "./chunk-R4KPLLRB.js";
+} from "./chunk-SFX3BG6N.js";
 import {
   init_esm_shims
 } from "./chunk-ZHC57RCV.js";
@@ -266,4 +266,4 @@ async function applyLabelLinear(ctx, apiKey) {
 export {
   closeIssue
 };
-//# sourceMappingURL=chunk-OJF4QS3S.js.map
+//# sourceMappingURL=chunk-GIW2TUWI.js.map

package/dist/{chunk-SUM2WVPF.js → chunk-H7T35QDO.js}

@@ -8,19 +8,10 @@ import {
   setManifestEntry,
   writeManifest
 } from "./chunk-AQXETQHW.js";
-import {
-  init_factory,
-  init_github,
-  init_gitlab,
-  init_linear
-} from "./chunk-UKSGE6RH.js";
 import {
   getDevrootPath,
   init_config
 } from "./chunk-QAJAJBFW.js";
-import {
-  init_interface
-} from "./chunk-DMRTN432.js";
 import {
   BACKUPS_DIR,
   BIN_DIR,
@@ -36,6 +27,15 @@ import {
   init_paths,
   isDevMode
 } from "./chunk-ZTFNYOC7.js";
+import {
+  init_factory,
+  init_github,
+  init_gitlab,
+  init_linear
+} from "./chunk-3KYTNMSE.js";
+import {
+  init_interface
+} from "./chunk-DMRTN432.js";
 import {
   init_esm_shims
 } from "./chunk-ZHC57RCV.js";
@@ -182,13 +182,28 @@ function isPanopticonSymlink(targetPath) {
     return false;
   }
 }
-function migrateFromPersonalSymlinks() {
+function migrateStalePersonalContent() {
   const claudeDir = join3(homedir2(), ".claude");
   const result = {
     removedSymlinks: [],
     preservedUserContent: [],
     errors: []
   };
+  const devrootNames = /* @__PURE__ */ new Set();
+  const devroot = getDevrootPath();
+  if (devroot) {
+    for (const subdir of ["skills", "commands", "agents"]) {
+      const devrootDir = join3(devroot, ".claude", subdir);
+      if (existsSync3(devrootDir)) {
+        try {
+          for (const entry of readdirSync2(devrootDir)) {
+            devrootNames.add(`${subdir}/${entry}`);
+          }
+        } catch {
+        }
+      }
+    }
+  }
   for (const subdir of ["skills", "commands", "agents"]) {
     const dir = join3(claudeDir, subdir);
     if (!existsSync3(dir)) continue;
@@ -206,6 +221,9 @@ function migrateFromPersonalSymlinks() {
             } else {
               result.preservedUserContent.push(`${subdir}/${entry}`);
             }
+          } else if (stats.isDirectory() && devrootNames.has(`${subdir}/${entry}`)) {
+            rmSync2(entryPath, { recursive: true, force: true });
+            result.removedSymlinks.push(`${subdir}/${entry} (stale copy)`);
           } else {
             result.preservedUserContent.push(`${subdir}/${entry}`);
           }
@@ -662,7 +680,7 @@ export {
   restoreBackup,
   cleanOldBackups,
   isPanopticonSymlink,
-  migrateFromPersonalSymlinks,
+  migrateStalePersonalContent,
   refreshCache,
   planSync,
   executeSync,
@@ -674,4 +692,4 @@ export {
   LinkManager,
   getLinkManager
 };
-//# sourceMappingURL=chunk-SUM2WVPF.js.map
+//# sourceMappingURL=chunk-H7T35QDO.js.map

package/dist/chunk-H7T35QDO.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/lib/shell.ts","../src/lib/backup.ts","../src/lib/sync.ts","../src/lib/tracker/linking.ts","../src/lib/tracker/index.ts"],"sourcesContent":["import { existsSync, readFileSync, appendFileSync } from 'fs';\nimport { homedir } from 'os';\nimport { join } from 'path';\n\nexport type Shell = 'bash' | 'zsh' | 'fish' | 'unknown';\n\nexport function detectShell(): Shell {\n  const shell = process.env.SHELL || '';\n\n  if (shell.includes('zsh')) return 'zsh';\n  if (shell.includes('bash')) return 'bash';\n  if (shell.includes('fish')) return 'fish';\n\n  return 'unknown';\n}\n\nexport function getShellRcFile(shell: Shell): string | null {\n  const home = homedir();\n\n  switch (shell) {\n    case 'zsh':\n      return join(home, '.zshrc');\n    case 'bash':\n      // Prefer .bashrc, fall back to .bash_profile\n      const bashrc = join(home, '.bashrc');\n      if (existsSync(bashrc)) return bashrc;\n      return join(home, '.bash_profile');\n    case 'fish':\n      return join(home, '.config', 'fish', 'config.fish');\n    default:\n      return null;\n  }\n}\n\nconst ALIAS_LINE = 'alias pan=\"panopticon\"';\nconst ALIAS_MARKER = '# Panopticon CLI alias';\n\nexport function hasAlias(rcFile: string): boolean {\n  if (!existsSync(rcFile)) return false;\n\n  const content = readFileSync(rcFile, 'utf8');\n  return content.includes(ALIAS_MARKER) || content.includes(ALIAS_LINE);\n}\n\nexport function addAlias(rcFile: string): void {\n  if (hasAlias(rcFile)) return;\n\n  const aliasBlock = `\n${ALIAS_MARKER}\n${ALIAS_LINE}\n`;\n\n  appendFileSync(rcFile, aliasBlock, 'utf8');\n}\n\nexport function getAliasInstructions(shell: Shell): string {\n  const rcFile = getShellRcFile(shell);\n\n  if (!rcFile) {\n    return `Add this to your shell config:\\n  ${ALIAS_LINE}`;\n  }\n\n  return `Alias added to ${rcFile}. Run:\\n  source ${rcFile}`;\n}\n","import { existsSync, mkdirSync, readdirSync, cpSync, rmSync, lstatSync } from 'fs';\nimport { join, basename } from 'path';\nimport { BACKUPS_DIR } from './paths.js';\n\nexport interface BackupInfo {\n  timestamp: string;\n  path: string;\n  targets: string[];\n}\n\nexport function createBackupTimestamp(): string {\n  return new Date().toISOString().replace(/[:.]/g, '-');\n}\n\nexport function createBackup(sourceDirs: string[]): BackupInfo {\n  const timestamp = createBackupTimestamp();\n  const backupPath = join(BACKUPS_DIR, timestamp);\n\n  mkdirSync(backupPath, { recursive: true });\n\n  const targets: string[] = [];\n\n  for (const sourceDir of sourceDirs) {\n    if (!existsSync(sourceDir)) continue;\n\n    const targetName = basename(sourceDir);\n    const targetPath = join(backupPath, targetName);\n\n    // Use filter to skip symlinks — sync targets (e.g. ~/.claude/skills/)\n    // contain symlinks back into ~/.panopticon/skills/ which causes cpSync\n    // to fail with \"cannot copy to a subdirectory of self\".\n    cpSync(sourceDir, targetPath, {\n      recursive: true,\n      filter: (src) => !lstatSync(src).isSymbolicLink(),\n    });\n    targets.push(targetName);\n  }\n\n  return {\n    timestamp,\n    path: backupPath,\n    targets,\n  };\n}\n\nexport function listBackups(): BackupInfo[] {\n  if (!existsSync(BACKUPS_DIR)) return [];\n\n  const entries = readdirSync(BACKUPS_DIR, { withFileTypes: true });\n\n  return entries\n    .filter((e) => e.isDirectory())\n    .map((e) => {\n      const backupPath = join(BACKUPS_DIR, e.name);\n      const contents = readdirSync(backupPath);\n\n      return {\n        timestamp: e.name,\n        path: backupPath,\n        targets: contents,\n      };\n    })\n    .sort((a, b) => b.timestamp.localeCompare(a.timestamp));\n}\n\nexport function restoreBackup(timestamp: string, targetDirs: Record<string, string>): void {\n  const backupPath = join(BACKUPS_DIR, timestamp);\n\n  if (!existsSync(backupPath)) {\n    throw new Error(`Backup not found: ${timestamp}`);\n  }\n\n  const contents = readdirSync(backupPath, { withFileTypes: true });\n\n  for (const entry of contents) {\n    if (!entry.isDirectory()) continue;\n\n    const sourcePath = join(backupPath, entry.name);\n    const targetPath = targetDirs[entry.name];\n\n    if (!targetPath) continue;\n\n    // Remove existing and restore from backup\n    if (existsSync(targetPath)) {\n      rmSync(targetPath, { recursive: true });\n    }\n\n    cpSync(sourcePath, targetPath, { recursive: true });\n  }\n}\n\nexport function cleanOldBackups(keepCount: number = 10): number {\n  const backups = listBackups();\n\n  if (backups.length <= keepCount) return 0;\n\n  const toRemove = backups.slice(keepCount);\n  let removed = 0;\n\n  for (const backup of toRemove) {\n    rmSync(backup.path, { recursive: true });\n    removed++;\n  }\n\n  return removed;\n}\n","import { existsSync, mkdirSync, readdirSync, symlinkSync, unlinkSync, lstatSync, readlinkSync, rmSync, copyFileSync, chmodSync, readFileSync, writeFileSync } from 'fs';\nimport { join, basename, dirname, relative } from 'path';\nimport { homedir } from 'os';\nimport {\n  SKILLS_DIR, COMMANDS_DIR, AGENTS_DIR, BIN_DIR,\n  SOURCE_SCRIPTS_DIR, SOURCE_DEV_SKILLS_DIR, SOURCE_SKILLS_DIR, SOURCE_AGENTS_DIR, SOURCE_RULES_DIR,\n  CACHE_AGENTS_DIR, CACHE_RULES_DIR, CACHE_MANIFEST,\n  SYNC_TARGET, isDevMode,\n} from './paths.js';\nimport {\n  buildManifestFromDirectory, writeManifest, readManifest, hashFile,\n  setManifestEntry, collectSourceFiles,\n  type Manifest, type FileStatus,\n  compareFileToManifest,\n} from './manifest.js';\nimport { getDevrootPath } from './config.js';\n\nexport interface SyncItem {\n  name: string;\n  sourcePath: string;\n  targetPath: string;\n  status: 'new' | 'exists' | 'conflict' | 'symlink';\n}\n\nexport interface SyncPlan {\n  skills: SyncItem[];\n  commands: SyncItem[];\n  agents: SyncItem[];\n  rules: SyncItem[];\n  devSkills: SyncItem[];  // Developer-only skills (only synced in dev mode)\n}\n\n/**\n * Remove a file, symlink, or directory safely\n */\nfunction removeTarget(targetPath: string): void {\n  const stats = lstatSync(targetPath);\n  if (stats.isDirectory() && !stats.isSymbolicLink()) {\n    // It's a real directory, remove recursively\n    rmSync(targetPath, { recursive: true, force: true });\n  } else {\n    // It's a file or symlink\n    unlinkSync(targetPath);\n  }\n}\n\n/**\n * Check if a path is a Panopticon-managed symlink\n */\nexport function isPanopticonSymlink(targetPath: string): boolean {\n  if (!existsSync(targetPath)) return false;\n\n  try {\n    const stats = lstatSync(targetPath);\n    if (!stats.isSymbolicLink()) return false;\n\n    const linkTarget = readlinkSync(targetPath);\n    // It's ours if it points to our skills/commands dir\n    return linkTarget.includes('.panopticon');\n  } catch {\n    return false;\n  }\n}\n\nexport interface MigrationResult {\n  removedSymlinks: string[];\n  preservedUserContent: string[];\n  errors: string[];\n}\n\n/**\n * One-time migration: remove Panopticon-managed symlinks from ~/.claude/.\n *\n * Detects symlinks in ~/.claude/skills/ and ~/.claude/agents/ that point to\n * .panopticon directories. Removes only those symlinks, preserving any\n * user-created content (real files/directories).\n *\n * This is safe to run multiple times — it's a no-op if nothing remains to clean up.\n *\n * Removes two kinds of stale Panopticon content from ~/.claude/:\n * 1. Symlinks pointing to .panopticon or panopticon-cli (legacy sync method)\n * 2. Plain directories that also exist in the devroot (stale copies from before\n *    the devroot migration — these cause duplicate skill listings)\n */\nexport function migrateStalePersonalContent(): MigrationResult {\n  const claudeDir = join(homedir(), '.claude');\n  const result: MigrationResult = {\n    removedSymlinks: [],\n    preservedUserContent: [],\n    errors: [],\n  };\n\n  // Build a set of skill/agent/command names that exist in the devroot\n  // so we can identify stale copies in ~/.claude/\n  const devrootNames = new Set<string>();\n  const devroot = getDevrootPath();\n  if (devroot) {\n    for (const subdir of ['skills', 'commands', 'agents']) {\n      const devrootDir = join(devroot, '.claude', subdir);\n      if (existsSync(devrootDir)) {\n        try {\n          for (const entry of readdirSync(devrootDir)) {\n            devrootNames.add(`${subdir}/${entry}`);\n          }\n        } catch {\n          // Ignore read errors on devroot\n        }\n      }\n    }\n  }\n\n  for (const subdir of ['skills', 'commands', 'agents']) {\n    const dir = join(claudeDir, subdir);\n    if (!existsSync(dir)) continue;\n\n    try {\n      const entries = readdirSync(dir);\n      for (const entry of entries) {\n        const entryPath = join(dir, entry);\n        try {\n          const stats = lstatSync(entryPath);\n          if (stats.isSymbolicLink()) {\n            const linkTarget = readlinkSync(entryPath);\n            if (linkTarget.includes('.panopticon') || linkTarget.includes('panopticon-cli')) {\n              unlinkSync(entryPath);\n              result.removedSymlinks.push(`${subdir}/${entry}`);\n            } else {\n              // Symlink to somewhere else — leave it\n              result.preservedUserContent.push(`${subdir}/${entry}`);\n            }\n          } else if (stats.isDirectory() && devrootNames.has(`${subdir}/${entry}`)) {\n            // Plain directory that also exists in devroot — stale Panopticon copy.\n            // The devroot copy is the canonical one; this personal copy causes\n            // duplicate listings and violates principle #4 (never touch ~/.claude/).\n            rmSync(entryPath, { recursive: true, force: true });\n            result.removedSymlinks.push(`${subdir}/${entry} (stale copy)`);\n          } else {\n            // Real file/directory with no devroot counterpart — user content, never touch\n            result.preservedUserContent.push(`${subdir}/${entry}`);\n          }\n        } catch (err: any) {\n          result.errors.push(`${subdir}/${entry}: ${err.message}`);\n        }\n      }\n    } catch (err: any) {\n      result.errors.push(`${subdir}: ${err.message}`);\n    }\n  }\n\n  return result;\n}\n\nexport interface RefreshCacheResult {\n  skills: { copied: number; total: number };\n  agents: { copied: number; total: number };\n  rules: { copied: number; total: number };\n}\n\n/**\n * Recursively copy a directory, overwriting existing files.\n */\nfunction copyDirectoryRecursive(source: string, dest: string): number {\n  if (!existsSync(source)) return 0;\n\n  mkdirSync(dest, { recursive: true });\n  let count = 0;\n\n  const entries = readdirSync(source, { withFileTypes: true });\n  for (const entry of entries) {\n    const srcPath = join(source, entry.name);\n    const dstPath = join(dest, entry.name);\n    if (entry.isDirectory()) {\n      count += copyDirectoryRecursive(srcPath, dstPath);\n    } else if (entry.isFile()) {\n      copyFileSync(srcPath, dstPath);\n      count++;\n    }\n  }\n  return count;\n}\n\n/**\n * Refresh the ~/.panopticon/ cache from the repo source.\n *\n * Always copies (overwrites) skills, agents, and rules from the package's\n * source directories to the cache. Generates ~/.panopticon/.manifest.json\n * tracking all cached files.\n *\n * This replaces the old \"skip if exists\" behavior in `pan install`.\n */\nexport function refreshCache(): RefreshCacheResult {\n  const result: RefreshCacheResult = {\n    skills: { copied: 0, total: 0 },\n    agents: { copied: 0, total: 0 },\n    rules: { copied: 0, total: 0 },\n  };\n\n  // Copy skills from repo to cache (always overwrite)\n  if (existsSync(SOURCE_SKILLS_DIR)) {\n    const skillDirs = readdirSync(SOURCE_SKILLS_DIR, { withFileTypes: true })\n      .filter((d) => d.isDirectory());\n\n    result.skills.total = skillDirs.length;\n    for (const skillDir of skillDirs) {\n      const src = join(SOURCE_SKILLS_DIR, skillDir.name);\n      const dst = join(SKILLS_DIR, skillDir.name);\n      copyDirectoryRecursive(src, dst);\n      result.skills.copied++;\n    }\n  }\n\n  // Copy dev-skills to cache too (in dev mode only)\n  if (isDevMode() && existsSync(SOURCE_DEV_SKILLS_DIR)) {\n    const devSkillDirs = readdirSync(SOURCE_DEV_SKILLS_DIR, { withFileTypes: true })\n      .filter((d) => d.isDirectory());\n\n    for (const skillDir of devSkillDirs) {\n      const src = join(SOURCE_DEV_SKILLS_DIR, skillDir.name);\n      const dst = join(SKILLS_DIR, skillDir.name);\n      copyDirectoryRecursive(src, dst);\n      result.skills.copied++;\n      result.skills.total++;\n    }\n  }\n\n  // Copy agent definitions from repo to cache\n  if (existsSync(SOURCE_AGENTS_DIR)) {\n    mkdirSync(CACHE_AGENTS_DIR, { recursive: true });\n    const agents = readdirSync(SOURCE_AGENTS_DIR, { withFileTypes: true })\n      .filter((entry) => entry.isFile() && entry.name.endsWith('.md'));\n\n    result.agents.total = agents.length;\n    for (const agent of agents) {\n      copyFileSync(join(SOURCE_AGENTS_DIR, agent.name), join(CACHE_AGENTS_DIR, agent.name));\n      result.agents.copied++;\n    }\n  }\n\n  // Copy rules from repo to cache (directory may not exist yet)\n  if (existsSync(SOURCE_RULES_DIR)) {\n    const ruleFiles = readdirSync(SOURCE_RULES_DIR, { withFileTypes: true })\n      .filter((entry) => entry.isFile());\n\n    result.rules.total = ruleFiles.length;\n    for (const rule of ruleFiles) {\n      mkdirSync(CACHE_RULES_DIR, { recursive: true });\n      copyFileSync(join(SOURCE_RULES_DIR, rule.name), join(CACHE_RULES_DIR, rule.name));\n      result.rules.copied++;\n    }\n  }\n\n  // Generate cache manifest\n  const manifest = buildManifestFromDirectory(\n    join(SKILLS_DIR, '..'),  // ~/.panopticon/\n    ['skills', 'agent-definitions', 'rules'],\n    'panopticon',\n  );\n  writeManifest(CACHE_MANIFEST, manifest);\n\n  return result;\n}\n\n/**\n * Devroot sync item — represents a single file to distribute.\n */\nexport interface DevrootSyncItem {\n  /** Relative path from .claude/ (e.g., \"skills/beads/SKILL.md\") */\n  relativePath: string;\n  /** Absolute path to source file in cache */\n  sourcePath: string;\n  /** Absolute path to target file at devroot */\n  targetPath: string;\n  /** What action to take */\n  status: FileStatus;\n}\n\n/**\n * Plan what would be synced to devroot (dry run).\n * Reads from cache, targets <devroot>/.claude/, uses manifest comparison.\n */\nexport function planSync(): SyncPlan {\n  const plan: SyncPlan = {\n    skills: [],\n    commands: [],\n    agents: [],\n    rules: [],\n    devSkills: [],\n  };\n\n  const devrootPath = getDevrootPath();\n  if (!devrootPath) return plan;\n\n  const targetBase = join(devrootPath, '.claude');\n  const manifestPath = join(targetBase, '.panopticon-manifest.json');\n  const manifest = readManifest(manifestPath);\n\n  // Plan skills\n  const skillFiles = collectSourceFiles(SKILLS_DIR, 'skills/');\n  for (const file of skillFiles) {\n    const targetFile = join(targetBase, file.relativePath);\n    const status = compareFileToManifest(targetFile, file.relativePath, manifest);\n    const skillName = file.relativePath.split('/')[1] || file.relativePath;\n\n    let syncStatus: SyncItem['status'] = 'new';\n    if (status.action === 'update') syncStatus = 'symlink';  // reusing 'symlink' for \"managed, safe to update\"\n    else if (status.action === 'modified') syncStatus = 'conflict';\n    else if (status.action === 'user-owned') syncStatus = 'conflict';\n\n    plan.skills.push({\n      name: file.relativePath,\n      sourcePath: file.absolutePath,\n      targetPath: targetFile,\n      status: syncStatus,\n    });\n  }\n\n  // Plan agents\n  const agentFiles = collectSourceFiles(CACHE_AGENTS_DIR, 'agents/');\n  for (const file of agentFiles) {\n    const targetFile = join(targetBase, file.relativePath);\n    const status = compareFileToManifest(targetFile, file.relativePath, manifest);\n\n    let syncStatus: SyncItem['status'] = 'new';\n    if (status.action === 'update') syncStatus = 'symlink';\n    else if (status.action === 'modified') syncStatus = 'conflict';\n    else if (status.action === 'user-owned') syncStatus = 'conflict';\n\n    plan.agents.push({\n      name: file.relativePath,\n      sourcePath: file.absolutePath,\n      targetPath: targetFile,\n      status: syncStatus,\n    });\n  }\n\n  // Plan rules\n  const ruleFiles = collectSourceFiles(CACHE_RULES_DIR, 'rules/');\n  for (const file of ruleFiles) {\n    const targetFile = join(targetBase, file.relativePath);\n    const status = compareFileToManifest(targetFile, file.relativePath, manifest);\n\n    let syncStatus: SyncItem['status'] = 'new';\n    if (status.action === 'update') syncStatus = 'symlink';\n    else if (status.action === 'modified') syncStatus = 'conflict';\n    else if (status.action === 'user-owned') syncStatus = 'conflict';\n\n    plan.rules.push({\n      name: file.relativePath,\n      sourcePath: file.absolutePath,\n      targetPath: targetFile,\n      status: syncStatus,\n    });\n  }\n\n  return plan;\n}\n\nexport interface SyncOptions {\n  force?: boolean;\n  diff?: boolean;\n  dryRun?: boolean;\n}\n\nexport interface SyncResult {\n  created: string[];\n  updated: string[];\n  skipped: string[];\n  conflicts: string[];\n  diffs: Array<{ path: string; sourceContent: string; targetContent: string }>;\n}\n\n/**\n * Execute sync to devroot: copy from cache to <devroot>/.claude/.\n * Uses manifest-based conflict resolution. NEVER touches ~/.claude/.\n */\nexport function executeSync(options: SyncOptions = {}): SyncResult {\n  const result: SyncResult = {\n    created: [],\n    updated: [],\n    skipped: [],\n    conflicts: [],\n    diffs: [],\n  };\n\n  const devrootPath = getDevrootPath();\n  if (!devrootPath) {\n    return result;\n  }\n\n  const targetBase = join(devrootPath, '.claude');\n  const manifestPath = join(targetBase, '.panopticon-manifest.json');\n  const manifest = readManifest(manifestPath);\n\n  // Collect all source files from cache\n  const allFiles = [\n    ...collectSourceFiles(SKILLS_DIR, 'skills/'),\n    ...collectSourceFiles(CACHE_AGENTS_DIR, 'agents/'),\n    ...collectSourceFiles(CACHE_RULES_DIR, 'rules/'),\n  ];\n\n  for (const file of allFiles) {\n    const targetFile = join(targetBase, file.relativePath);\n    const status = compareFileToManifest(targetFile, file.relativePath, manifest);\n\n    switch (status.action) {\n      case 'new': {\n        // File doesn't exist at target — copy it\n        mkdirSync(dirname(targetFile), { recursive: true });\n        copyFileSync(file.absolutePath, targetFile);\n        const hash = hashFile(targetFile);\n        setManifestEntry(manifest, file.relativePath, hash, 'panopticon');\n        result.created.push(file.relativePath);\n        break;\n      }\n\n      case 'update': {\n        // File exists, hash matches manifest — safe to overwrite (user didn't modify)\n        mkdirSync(dirname(targetFile), { recursive: true });\n        copyFileSync(file.absolutePath, targetFile);\n        const hash = hashFile(targetFile);\n        setManifestEntry(manifest, file.relativePath, hash, 'panopticon');\n        result.updated.push(file.relativePath);\n        break;\n      }\n\n      case 'modified': {\n        // File was modified since we placed it\n        if (options.diff) {\n          result.diffs.push({\n            path: file.relativePath,\n            sourceContent: readFileSync(file.absolutePath, 'utf-8'),\n            targetContent: readFileSync(targetFile, 'utf-8'),\n          });\n        }\n\n        if (options.force) {\n          mkdirSync(dirname(targetFile), { recursive: true });\n          copyFileSync(file.absolutePath, targetFile);\n          const hash = hashFile(targetFile);\n          setManifestEntry(manifest, file.relativePath, hash, 'panopticon');\n          result.updated.push(file.relativePath);\n        } else {\n          result.conflicts.push(file.relativePath);\n        }\n        break;\n      }\n\n      case 'user-owned': {\n        // User placed this file, never touch it\n        result.skipped.push(file.relativePath);\n        break;\n      }\n    }\n  }\n\n  // Write updated manifest\n  writeManifest(manifestPath, manifest);\n\n  return result;\n}\n\n/**\n * Hook item for sync planning\n */\nexport interface HookItem {\n  name: string;\n  sourcePath: string;\n  targetPath: string;\n  status: 'new' | 'updated' | 'current';\n}\n\n/**\n * Plan hooks sync (checks what would be updated)\n */\nexport function planHooksSync(): HookItem[] {\n  const hooks: HookItem[] = [];\n\n  if (!existsSync(SOURCE_SCRIPTS_DIR)) {\n    return hooks;\n  }\n\n  // Sync hook scripts (no extension) and bundled JS scripts (.js)\n  // Skip source files (.ts), shell helpers (.sh), and other non-hook files (.mjs)\n  const scripts = readdirSync(SOURCE_SCRIPTS_DIR, { withFileTypes: true })\n    .filter((entry) => entry.isFile() && !entry.name.startsWith('.')\n      && (!entry.name.includes('.') || entry.name.endsWith('.js')));\n\n  for (const script of scripts) {\n    const sourcePath = join(SOURCE_SCRIPTS_DIR, script.name);\n    const targetPath = join(BIN_DIR, script.name);\n\n    let status: HookItem['status'] = 'new';\n\n    if (existsSync(targetPath)) {\n      // Could compare file contents/timestamps here for 'current' vs 'updated'\n      // For now, always update to ensure latest version\n      status = 'updated';\n    }\n\n    hooks.push({ name: script.name, sourcePath, targetPath, status });\n  }\n\n  return hooks;\n}\n\n/**\n * Sync hooks (copy scripts to ~/.panopticon/bin/)\n */\nexport function syncHooks(): { synced: string[]; errors: string[] } {\n  const result = { synced: [] as string[], errors: [] as string[] };\n\n  // Ensure bin directory exists\n  mkdirSync(BIN_DIR, { recursive: true });\n\n  const hooks = planHooksSync();\n\n  for (const hook of hooks) {\n    try {\n      copyFileSync(hook.sourcePath, hook.targetPath);\n      chmodSync(hook.targetPath, 0o755); // Make executable\n      result.synced.push(hook.name);\n    } catch (error) {\n      result.errors.push(`${hook.name}: ${error}`);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Runtime-specific statusline configurations\n * Maps runtime to: config dir, statusline filename, settings file\n */\nconst STATUSLINE_TARGETS: Record<string, { configDir: string; scriptName: string; settingsFile: string }> = {\n  claude: {\n    configDir: join(homedir(), '.claude'),\n    scriptName: 'statusline-command.sh',\n    settingsFile: join(homedir(), '.claude', 'settings.json'),\n  },\n  // Other runtimes can be added as they support statusline\n};\n\n/**\n * Sync statusline script to all supported runtimes\n * Copies the canonical statusline.sh from panopticon scripts to each runtime's config dir\n * and ensures the runtime's settings.json references it.\n */\nexport function syncStatusline(): { synced: string[]; errors: string[] } {\n  const result = { synced: [] as string[], errors: [] as string[] };\n\n  const sourceScript = join(SOURCE_SCRIPTS_DIR, 'statusline.sh');\n  if (!existsSync(sourceScript)) {\n    return result;\n  }\n\n  for (const [runtime, target] of Object.entries(STATUSLINE_TARGETS)) {\n    try {\n      // Ensure config dir exists\n      mkdirSync(target.configDir, { recursive: true });\n\n      // Copy statusline script\n      const targetScript = join(target.configDir, target.scriptName);\n      copyFileSync(sourceScript, targetScript);\n      chmodSync(targetScript, 0o755);\n\n      // Update settings.json to reference the statusline\n      updateSettingsStatusline(target.settingsFile, targetScript);\n\n      result.synced.push(runtime);\n    } catch (error) {\n      result.errors.push(`${runtime}: ${error}`);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Update a settings.json file to include the statusLine configuration\n * Preserves all existing settings (hooks, etc.)\n */\nfunction updateSettingsStatusline(settingsFile: string, scriptPath: string): void {\n  let settings: Record<string, any> = {};\n\n  if (existsSync(settingsFile)) {\n    try {\n      settings = JSON.parse(readFileSync(settingsFile, 'utf-8'));\n    } catch {\n      // If settings file is corrupt, start fresh but preserve the file\n      settings = {};\n    }\n  }\n\n  // Only update if statusLine is missing or points to a different script\n  const currentCommand = settings.statusLine?.command;\n  if (currentCommand === scriptPath && settings.statusLine?.type === 'command') {\n    return; // Already configured correctly\n  }\n\n  settings.statusLine = {\n    type: 'command',\n    command: scriptPath,\n    padding: 0,\n  };\n\n  mkdirSync(dirname(settingsFile), { recursive: true });\n  writeFileSync(settingsFile, JSON.stringify(settings, null, 2) + '\\n', 'utf-8');\n}\n","/**\n * Cross-Tracker Linking\n *\n * Manages links between issues in different trackers.\n * Links are stored in a local JSON file for persistence.\n */\n\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'fs';\nimport { join } from 'path';\nimport { homedir } from 'os';\nimport type { TrackerType } from './interface.js';\n\n// Link direction types\nexport type LinkDirection = 'blocks' | 'blocked_by' | 'related' | 'duplicate_of';\n\n// A single link between two issues\nexport interface TrackerLink {\n  sourceIssueRef: string;    // e.g., \"MIN-630\"\n  sourceTracker: TrackerType;\n  targetIssueRef: string;    // e.g., \"#42\"\n  targetTracker: TrackerType;\n  direction: LinkDirection;\n  createdAt: string;         // ISO timestamp\n}\n\n// Storage format\ninterface LinkStore {\n  version: 1;\n  links: TrackerLink[];\n}\n\n/**\n * Parse an issue reference to extract tracker and ID\n * Examples:\n *   \"#42\" -> { tracker: \"github\", ref: \"#42\" }\n *   \"github#42\" -> { tracker: \"github\", ref: \"#42\" }\n *   \"MIN-630\" -> { tracker: \"linear\", ref: \"MIN-630\" }\n *   \"gitlab#15\" -> { tracker: \"gitlab\", ref: \"#15\" }\n */\nexport function parseIssueRef(ref: string): { tracker: TrackerType; ref: string } | null {\n  // Explicit tracker prefix\n  if (ref.startsWith('github#')) {\n    return { tracker: 'github', ref: `#${ref.slice(7)}` };\n  }\n  if (ref.startsWith('gitlab#')) {\n    return { tracker: 'gitlab', ref: `#${ref.slice(7)}` };\n  }\n  if (ref.startsWith('linear:')) {\n    return { tracker: 'linear', ref: ref.slice(7) };\n  }\n\n  // GitHub-style refs (#number)\n  if (/^#\\d+$/.test(ref)) {\n    return { tracker: 'github', ref };\n  }\n\n  // Linear-style refs (XXX-123)\n  if (/^[A-Z]+-\\d+$/i.test(ref)) {\n    return { tracker: 'linear', ref: ref.toUpperCase() };\n  }\n\n  return null;\n}\n\n/**\n * Format an issue ref with tracker prefix for display\n */\nexport function formatIssueRef(ref: string, tracker: TrackerType): string {\n  if (tracker === 'github') {\n    return ref.startsWith('#') ? `github${ref}` : `github#${ref}`;\n  }\n  if (tracker === 'gitlab') {\n    return ref.startsWith('#') ? `gitlab${ref}` : `gitlab#${ref}`;\n  }\n  return ref; // Linear refs are already unique\n}\n\n/**\n * Link Manager for cross-tracker issue linking\n */\nexport class LinkManager {\n  private storePath: string;\n  private store: LinkStore;\n\n  constructor(storePath?: string) {\n    this.storePath = storePath ?? join(homedir(), '.panopticon', 'links.json');\n    this.store = this.load();\n  }\n\n  private load(): LinkStore {\n    if (existsSync(this.storePath)) {\n      try {\n        const data = JSON.parse(readFileSync(this.storePath, 'utf-8'));\n        if (data.version === 1) {\n          return data;\n        }\n      } catch {\n        // Fall through to default\n      }\n    }\n    return { version: 1, links: [] };\n  }\n\n  private save(): void {\n    const dir = join(this.storePath, '..');\n    if (!existsSync(dir)) {\n      mkdirSync(dir, { recursive: true });\n    }\n    writeFileSync(this.storePath, JSON.stringify(this.store, null, 2));\n  }\n\n  /**\n   * Add a link between two issues\n   */\n  addLink(\n    source: { ref: string; tracker: TrackerType },\n    target: { ref: string; tracker: TrackerType },\n    direction: LinkDirection = 'related'\n  ): TrackerLink {\n    // Check if link already exists\n    const existing = this.store.links.find(\n      (l) =>\n        l.sourceIssueRef === source.ref &&\n        l.sourceTracker === source.tracker &&\n        l.targetIssueRef === target.ref &&\n        l.targetTracker === target.tracker\n    );\n\n    if (existing) {\n      // Update direction if different\n      if (existing.direction !== direction) {\n        existing.direction = direction;\n        this.save();\n      }\n      return existing;\n    }\n\n    const link: TrackerLink = {\n      sourceIssueRef: source.ref,\n      sourceTracker: source.tracker,\n      targetIssueRef: target.ref,\n      targetTracker: target.tracker,\n      direction,\n      createdAt: new Date().toISOString(),\n    };\n\n    this.store.links.push(link);\n    this.save();\n    return link;\n  }\n\n  /**\n   * Remove a link between two issues\n   */\n  removeLink(\n    source: { ref: string; tracker: TrackerType },\n    target: { ref: string; tracker: TrackerType }\n  ): boolean {\n    const index = this.store.links.findIndex(\n      (l) =>\n        l.sourceIssueRef === source.ref &&\n        l.sourceTracker === source.tracker &&\n        l.targetIssueRef === target.ref &&\n        l.targetTracker === target.tracker\n    );\n\n    if (index >= 0) {\n      this.store.links.splice(index, 1);\n      this.save();\n      return true;\n    }\n    return false;\n  }\n\n  /**\n   * Get all issues linked to a given issue\n   */\n  getLinkedIssues(ref: string, tracker: TrackerType): TrackerLink[] {\n    return this.store.links.filter(\n      (l) =>\n        (l.sourceIssueRef === ref && l.sourceTracker === tracker) ||\n        (l.targetIssueRef === ref && l.targetTracker === tracker)\n    );\n  }\n\n  /**\n   * Get all links (for debugging/admin)\n   */\n  getAllLinks(): TrackerLink[] {\n    return [...this.store.links];\n  }\n\n  /**\n   * Find linked issue in another tracker\n   */\n  findLinkedIssue(\n    ref: string,\n    sourceTracker: TrackerType,\n    targetTracker: TrackerType\n  ): string | null {\n    // Check as source\n    const asSource = this.store.links.find(\n      (l) =>\n        l.sourceIssueRef === ref &&\n        l.sourceTracker === sourceTracker &&\n        l.targetTracker === targetTracker\n    );\n    if (asSource) return asSource.targetIssueRef;\n\n    // Check as target\n    const asTarget = this.store.links.find(\n      (l) =>\n        l.targetIssueRef === ref &&\n        l.targetTracker === sourceTracker &&\n        l.sourceTracker === targetTracker\n    );\n    if (asTarget) return asTarget.sourceIssueRef;\n\n    return null;\n  }\n\n  /**\n   * Clear all links (for testing)\n   */\n  clear(): void {\n    this.store.links = [];\n    this.save();\n  }\n}\n\n// Singleton instance\nlet _linkManager: LinkManager | null = null;\n\nexport function getLinkManager(): LinkManager {\n  if (!_linkManager) {\n    _linkManager = new LinkManager();\n  }\n  return _linkManager;\n}\n","/**\n * Issue Tracker Module\n *\n * Provides a unified interface for different issue tracking systems.\n */\n\n// Core interface and types\nexport type {\n  IssueTracker,\n  Issue,\n  IssueFilters,\n  IssueState,\n  IssueUpdate,\n  NewIssue,\n  Comment,\n  TrackerType,\n} from './interface.js';\n\nexport {\n  NotImplementedError,\n  IssueNotFoundError,\n  TrackerAuthError,\n} from './interface.js';\n\n// Tracker implementations\nexport { LinearTracker } from './linear.js';\nexport { GitHubTracker } from './github.js';\nexport { GitLabTracker } from './gitlab.js';\n\n// Factory functions\nexport type { TrackerConfig } from './factory.js';\nexport {\n  createTracker,\n  createTrackerFromConfig,\n  getPrimaryTracker,\n  getSecondaryTracker,\n  getAllTrackers,\n} from './factory.js';\n\n// Cross-tracker linking\nexport type { TrackerLink, LinkDirection } from './linking.js';\nexport {\n  LinkManager,\n  getLinkManager,\n  parseIssueRef,\n  formatIssueRef,\n} from 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package/dist/{chunk-MJXYTGK5.js → chunk-JZWCL5S5.js}

@@ -2,7 +2,7 @@ import {
   stepFailed,
   stepOk,
   stepSkipped
-} from "./chunk-R4KPLLRB.js";
+} from "./chunk-SFX3BG6N.js";
 import {
   init_esm_shims
 } from "./chunk-ZHC57RCV.js";
@@ -61,4 +61,4 @@ async function compactBeads(ctx, opts = {}) {
 export {
   compactBeads
 };
-//# sourceMappingURL=chunk-MJXYTGK5.js.map
+//# sourceMappingURL=chunk-JZWCL5S5.js.map