pan-wizard 2.9.0 → 3.4.1

package/bin/install.js

@@ -1,1959 +1,1999 @@
-#!/usr/bin/env node
-
-const fs = require('fs');
-const path = require('path');
-const os = require('os');
-const readline = require('readline');
-const crypto = require('crypto');
-
-// Extracted pure functions (testable independently)
-const lib = require('./install-lib.cjs');
-const {
-  colorNameToHex, claudeToOpencodeTools, claudeToGeminiTools, claudeToCopilotTools,
-  getDirName, getConfigDirFromHome, expandTilde, toSingleLine, yamlQuote, buildHookCommand,
-  extractFrontmatterAndBody, extractFrontmatterField,
-  convertToolName, convertGeminiToolName, convertCopilotToolName,
-  convertSlashCommandsToCodexSkillMentions, convertSlashCommandsToCopilotSkillMentions,
-  convertClaudeToCodexMarkdown, convertClaudeToCopilotMarkdown,
-  convertClaudeToOpencodeFrontmatter, convertClaudeToGeminiToml, convertClaudeToGeminiAgent,
-  rewriteAskUserQuestionForCopilot, stripSubTags,
-  getCodexSkillAdapterHeader, convertClaudeCommandToCodexSkill,
-  getCopilotSkillAdapterHeader, convertClaudeCommandToCopilotSkill, convertClaudeToCopilotAgent,
-  processAttribution, parseJsonc,
-} = lib;
-
-// Colors
-const cyan = '\x1b[36m';
-const green = '\x1b[32m';
-const yellow = '\x1b[33m';
-const red = '\x1b[31m';
-const dim = '\x1b[2m';
-const reset = '\x1b[0m';
-
-// Get version from package.json
-const pkg = require('../package.json');
-
-// Source repo root — prevent installing PAN into its own source directory
-const PAN_SOURCE_ROOT = path.resolve(__dirname, '..');
-
-// Parse args
-const args = process.argv.slice(2);
-const hasGlobal = args.includes('--global') || args.includes('-g');
-const hasLocal = args.includes('--local') || args.includes('-l');
-const hasOpencode = args.includes('--opencode');
-const hasClaude = args.includes('--claude');
-const hasGemini = args.includes('--gemini');
-const hasCodex = args.includes('--codex');
-const hasCopilot = args.includes('--copilot');
-const hasBoth = args.includes('--both'); // Legacy flag, keeps working
-const hasAll = args.includes('--all');
-const hasUninstall = args.includes('--uninstall') || args.includes('-u');
-
-// Runtime selection - can be set by flags or interactive prompt
-let selectedRuntimes = [];
-if (hasAll) {
-  selectedRuntimes = ['claude', 'opencode', 'gemini', 'codex', 'copilot'];
-} else if (hasBoth) {
-  selectedRuntimes = ['claude', 'opencode'];
-} else {
-  if (hasOpencode) selectedRuntimes.push('opencode');
-  if (hasClaude) selectedRuntimes.push('claude');
-  if (hasGemini) selectedRuntimes.push('gemini');
-  if (hasCodex) selectedRuntimes.push('codex');
-  if (hasCopilot) selectedRuntimes.push('copilot');
-}
-
-/**
- * Get the global config directory for OpenCode
- * OpenCode follows XDG Base Directory spec and uses ~/.config/opencode/
- * Priority: OPENCODE_CONFIG_DIR > dirname(OPENCODE_CONFIG) > XDG_CONFIG_HOME/opencode > ~/.config/opencode
- */
-function getOpencodeGlobalDir() {
-  // 1. Explicit OPENCODE_CONFIG_DIR env var
-  if (process.env.OPENCODE_CONFIG_DIR) {
-    return expandTilde(process.env.OPENCODE_CONFIG_DIR);
-  }
-  
-  // 2. OPENCODE_CONFIG env var (use its directory)
-  if (process.env.OPENCODE_CONFIG) {
-    return path.dirname(expandTilde(process.env.OPENCODE_CONFIG));
-  }
-  
-  // 3. XDG_CONFIG_HOME/opencode
-  if (process.env.XDG_CONFIG_HOME) {
-    return path.join(expandTilde(process.env.XDG_CONFIG_HOME), 'opencode');
-  }
-  
-  // 4. Default: ~/.config/opencode (XDG default)
-  return path.join(os.homedir(), '.config', 'opencode');
-}
-
-/**
- * Get the global config directory for a runtime
- * @param {string} runtime - 'claude', 'opencode', 'gemini', or 'codex'
- * @param {string|null} explicitDir - Explicit directory from --config-dir flag
- */
-function getGlobalDir(runtime, explicitDir = null) {
-  if (runtime === 'opencode') {
-    // For OpenCode, --config-dir overrides env vars
-    if (explicitDir) {
-      return expandTilde(explicitDir);
-    }
-    return getOpencodeGlobalDir();
-  }
-  
-  if (runtime === 'gemini') {
-    // Gemini: --config-dir > GEMINI_CONFIG_DIR > ~/.gemini
-    if (explicitDir) {
-      return expandTilde(explicitDir);
-    }
-    if (process.env.GEMINI_CONFIG_DIR) {
-      return expandTilde(process.env.GEMINI_CONFIG_DIR);
-    }
-    return path.join(os.homedir(), '.gemini');
-  }
-
-  if (runtime === 'codex') {
-    // Codex: --config-dir > CODEX_HOME > ~/.codex
-    if (explicitDir) {
-      return expandTilde(explicitDir);
-    }
-    if (process.env.CODEX_HOME) {
-      return expandTilde(process.env.CODEX_HOME);
-    }
-    return path.join(os.homedir(), '.codex');
-  }
-
-  if (runtime === 'copilot') {
-    // Copilot CLI: --config-dir > COPILOT_CONFIG_DIR > ~/.copilot
-    if (explicitDir) {
-      return expandTilde(explicitDir);
-    }
-    if (process.env.COPILOT_CONFIG_DIR) {
-      return expandTilde(process.env.COPILOT_CONFIG_DIR);
-    }
-    return path.join(os.homedir(), '.copilot');
-  }
-
-  // Claude Code: --config-dir > CLAUDE_CONFIG_DIR > ~/.claude
-  if (explicitDir) {
-    return expandTilde(explicitDir);
-  }
-  if (process.env.CLAUDE_CONFIG_DIR) {
-    return expandTilde(process.env.CLAUDE_CONFIG_DIR);
-  }
-  return path.join(os.homedir(), '.claude');
-}
-
-const banner = '\n' +
-  cyan + '  ██████╗  █████╗ ███╗   ██╗\n' +
-  '  ██╔══██╗██╔══██╗████╗  ██║\n' +
-  '  ██████╔╝███████║██╔██╗ ██║\n' +
-  '  ██╔═══╝ ██╔══██║██║╚██╗██║\n' +
-  '  ██║     ██║  ██║██║ ╚████║\n' +
-  '  ╚═╝     ╚═╝  ╚═╝╚═╝  ╚═══╝' + reset + '\n' +
-  '\n' +
-  '  PAN Wizard ' + dim + 'v' + pkg.version + reset + '\n' +
-  '  A lightweight workflow automation and context engineering\n' +
-  '  system for Claude Code, OpenCode, Gemini, Codex, and Copilot CLI.\n';
-
-// Parse --config-dir argument
-function parseConfigDirArg() {
-  const configDirIndex = args.findIndex(arg => arg === '--config-dir' || arg === '-c');
-  if (configDirIndex !== -1) {
-    const nextArg = args[configDirIndex + 1];
-    // Error if --config-dir is provided without a value or next arg is another flag
-    if (!nextArg || nextArg.startsWith('-')) {
-      console.error(`  ${yellow}--config-dir requires a path argument${reset}`);
-      process.exit(1);
-    }
-    return nextArg;
-  }
-  // Also handle --config-dir=value format
-  const configDirArg = args.find(arg => arg.startsWith('--config-dir=') || arg.startsWith('-c='));
-  if (configDirArg) {
-    const value = configDirArg.split('=')[1];
-    if (!value) {
-      console.error(`  ${yellow}--config-dir requires a non-empty path${reset}`);
-      process.exit(1);
-    }
-    return value;
-  }
-  return null;
-}
-const explicitConfigDir = parseConfigDirArg();
-const hasHelp = args.includes('--help') || args.includes('-h');
-const forceStatusline = args.includes('--force-statusline');
-
-console.log(banner);
-
-// Show help if requested
-if (hasHelp) {
-  console.log(`  ${yellow}Usage:${reset} npx pan-wizard [options]\n\n  ${yellow}Options:${reset}\n    ${cyan}-l, --local${reset}               Install locally to current directory (default)\n    ${cyan}-g, --global${reset}              Install globally to config directory\n    ${cyan}--claude${reset}                  Install for Claude Code only\n    ${cyan}--opencode${reset}                Install for OpenCode only\n    ${cyan}--gemini${reset}                  Install for Gemini only\n    ${cyan}--codex${reset}                   Install for Codex only\n    ${cyan}--all${reset}                     Install for all runtimes\n    ${cyan}-u, --uninstall${reset}           Uninstall PAN (remove all PAN files)\n    ${cyan}-c, --config-dir <path>${reset}   Specify custom config directory\n    ${cyan}-h, --help${reset}                Show this help message\n    ${cyan}--force-statusline${reset}        Replace existing statusline config\n\n  ${yellow}Examples:${reset}\n    ${dim}# Interactive install (prompts for runtime and location)${reset}\n    npx pan-wizard\n\n    ${dim}# Install for Claude Code in current project (default)${reset}\n    npx pan-wizard --claude --local\n\n    ${dim}# Install for all runtimes in current project${reset}\n    npx pan-wizard --all --local\n\n    ${dim}# Install globally (available in all projects)${reset}\n    npx pan-wizard --claude --global\n\n    ${dim}# Install for Gemini globally${reset}\n    npx pan-wizard --gemini --global\n\n    ${dim}# Install to custom config directory${reset}\n    npx pan-wizard --codex --global --config-dir ~/.codex-work\n\n    ${dim}# Uninstall PAN from Codex globally${reset}\n    npx pan-wizard --codex --global --uninstall\n\n  ${yellow}Notes:${reset}\n    By default, PAN installs into the current project directory only.\n    Use --global to install system-wide (writes to ~/.claude, ~/.gemini, etc.).\n    The --config-dir option takes priority over CLAUDE_CONFIG_DIR / GEMINI_CONFIG_DIR / CODEX_HOME.\n`);
-  process.exit(0);
-}
-
-/**
- * Read and parse settings.json, returning empty object if it doesn't exist
- */
-function readSettings(settingsPath) {
-  try {
-    return JSON.parse(fs.readFileSync(settingsPath, 'utf8'));
-  } catch {
-    return {};
-  }
-}
-
-/**
- * Write settings.json with proper formatting
- */
-function writeSettings(settingsPath, settings) {
-  try {
-    fs.writeFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\n');
-  } catch (e) {
-    console.error(`  ${yellow}⚠${reset} Failed to write settings: ${e.message}`);
-  }
-}
-
-// Cache for attribution settings (populated once per runtime during install)
-const attributionCache = new Map();
-
-/**
- * Get commit attribution setting for a runtime
- * @param {string} runtime - 'claude', 'opencode', 'gemini', or 'codex'
- * @returns {null|undefined|string} null = remove, undefined = keep default, string = custom
- */
-function getCommitAttribution(runtime) {
-  // Return cached value if available
-  if (attributionCache.has(runtime)) {
-    return attributionCache.get(runtime);
-  }
-
-  let result;
-
-  if (runtime === 'opencode') {
-    const config = readSettings(path.join(getGlobalDir('opencode', null), 'opencode.json'));
-    result = config.disable_ai_attribution === true ? null : undefined;
-  } else if (runtime === 'gemini') {
-    // Gemini: check gemini settings.json for attribution config
-    const settings = readSettings(path.join(getGlobalDir('gemini', explicitConfigDir), 'settings.json'));
-    if (!settings.attribution || settings.attribution.commit === undefined) {
-      result = undefined;
-    } else if (settings.attribution.commit === '') {
-      result = null;
-    } else {
-      result = settings.attribution.commit;
-    }
-  } else if (runtime === 'claude') {
-    // Claude Code
-    const settings = readSettings(path.join(getGlobalDir('claude', explicitConfigDir), 'settings.json'));
-    if (!settings.attribution || settings.attribution.commit === undefined) {
-      result = undefined;
-    } else if (settings.attribution.commit === '') {
-      result = null;
-    } else {
-      result = settings.attribution.commit;
-    }
-  } else if (runtime === 'copilot') {
-    // Copilot CLI: check config.json for attribution setting
-    const config = readSettings(path.join(getGlobalDir('copilot', explicitConfigDir), 'config.json'));
-    if (!config.attribution || config.attribution.commit === undefined) {
-      result = undefined;
-    } else if (config.attribution.commit === '') {
-      result = null;
-    } else {
-      result = config.attribution.commit;
-    }
-  } else {
-    // Codex currently has no attribution setting equivalent
-    result = undefined;
-  }
-
-  // Cache and return
-  attributionCache.set(runtime, result);
-  return result;
-}
-
-// processAttribution, parseJsonc, and all pure converter functions
-// are provided by install-lib.cjs (see require at top of file).
-
-/**
- * Copy commands to a flat structure for OpenCode
- * OpenCode expects: command/pan-help.md (invoked as /pan-help)
- * Source structure: commands/pan/help.md
- * 
- * @param {string} srcDir - Source directory (e.g., commands/pan/)
- * @param {string} destDir - Destination directory (e.g., command/)
- * @param {string} prefix - Prefix for filenames (e.g., 'pan')
- * @param {string} pathPrefix - Path prefix for file references
- * @param {string} runtime - Target runtime ('claude' or 'opencode')
- */
-function copyFlattenedCommands(srcDir, destDir, prefix, pathPrefix, runtime) {
-  if (!fs.existsSync(srcDir)) {
-    return;
-  }
-  
-  // Remove old pan-*.md files before copying new ones
-  if (fs.existsSync(destDir)) {
-    for (const file of fs.readdirSync(destDir)) {
-      if (file.startsWith(`${prefix}-`) && file.endsWith('.md')) {
-        try { fs.unlinkSync(path.join(destDir, file)); } catch {}
-      }
-    }
-  } else {
-    try { fs.mkdirSync(destDir, { recursive: true }); } catch {}
-  }
-  
-  const entries = fs.readdirSync(srcDir, { withFileTypes: true });
-  
-  for (const entry of entries) {
-    const srcPath = path.join(srcDir, entry.name);
-    
-    if (entry.isDirectory()) {
-      // Recurse into subdirectories, adding to prefix
-      // e.g., commands/pan/debug/start.md -> command/pan-debug-start.md
-      copyFlattenedCommands(srcPath, destDir, `${prefix}-${entry.name}`, pathPrefix, runtime);
-    } else if (entry.name.endsWith('.md')) {
-      // Flatten: help.md -> pan-help.md
-      const baseName = entry.name.replace('.md', '');
-      const destName = `${prefix}-${baseName}.md`;
-      const destPath = path.join(destDir, destName);
-
-      let content = fs.readFileSync(srcPath, 'utf8');
-      const globalClaudeRegex = /~\/\.claude\//g;
-      const localClaudeRegex = /\.\/\.claude\//g;
-      const opencodeDirRegex = /~\/\.opencode\//g;
-      content = content.replace(globalClaudeRegex, pathPrefix);
-      content = content.replace(localClaudeRegex, `./${getDirName(runtime)}/`);
-      content = content.replace(opencodeDirRegex, pathPrefix);
-      content = processAttribution(content, getCommitAttribution(runtime));
-      content = convertClaudeToOpencodeFrontmatter(content);
-
-      fs.writeFileSync(destPath, content);
-    }
-  }
-}
-
-function listCodexSkillNames(skillsDir, prefix = 'pan-') {
-  if (!fs.existsSync(skillsDir)) return [];
-  const entries = fs.readdirSync(skillsDir, { withFileTypes: true });
-  return entries
-    .filter(entry => entry.isDirectory() && entry.name.startsWith(prefix))
-    .filter(entry => fs.existsSync(path.join(skillsDir, entry.name, 'SKILL.md')))
-    .map(entry => entry.name)
-    .sort();
-}
-
-function copyCommandsAsCodexSkills(srcDir, skillsDir, prefix, pathPrefix, runtime) {
-  if (!fs.existsSync(srcDir)) {
-    return;
-  }
-
-  try { fs.mkdirSync(skillsDir, { recursive: true }); } catch {}
-
-  // Remove previous PAN Codex skills to avoid stale command skills.
-  const existing = fs.readdirSync(skillsDir, { withFileTypes: true });
-  for (const entry of existing) {
-    if (entry.isDirectory() && entry.name.startsWith(`${prefix}-`)) {
-      try { fs.rmSync(path.join(skillsDir, entry.name), { recursive: true }); } catch {}
-    }
-  }
-
-  function recurse(currentSrcDir, currentPrefix) {
-    const entries = fs.readdirSync(currentSrcDir, { withFileTypes: true });
-
-    for (const entry of entries) {
-      const srcPath = path.join(currentSrcDir, entry.name);
-      if (entry.isDirectory()) {
-        recurse(srcPath, `${currentPrefix}-${entry.name}`);
-        continue;
-      }
-
-      if (!entry.name.endsWith('.md')) {
-        continue;
-      }
-
-      const baseName = entry.name.replace('.md', '');
-      const skillName = `${currentPrefix}-${baseName}`;
-      const skillDir = path.join(skillsDir, skillName);
-      fs.mkdirSync(skillDir, { recursive: true });
-
-      let content = fs.readFileSync(srcPath, 'utf8');
-      const globalClaudeRegex = /~\/\.claude\//g;
-      const localClaudeRegex = /\.\/\.claude\//g;
-      const codexDirRegex = /~\/\.codex\//g;
-      content = content.replace(globalClaudeRegex, pathPrefix);
-      content = content.replace(localClaudeRegex, `./${getDirName(runtime)}/`);
-      content = content.replace(codexDirRegex, pathPrefix);
-      content = processAttribution(content, getCommitAttribution(runtime));
-      content = convertClaudeCommandToCodexSkill(content, skillName);
-
-      fs.writeFileSync(path.join(skillDir, 'SKILL.md'), content);
-    }
-  }
-
-  recurse(srcDir, prefix);
-}
-
-/**
- * Copy PAN commands as Copilot CLI skills.
- * Creates skills/pan-{name}/SKILL.md directory structure.
- * Similar to copyCommandsAsCodexSkills but uses Copilot CLI converters.
- */
-function copyCommandsAsCopilotSkills(srcDir, skillsDir, prefix, pathPrefix, runtime) {
-  if (!fs.existsSync(srcDir)) {
-    return;
-  }
-
-  try { fs.mkdirSync(skillsDir, { recursive: true }); } catch {}
-
-  // Remove previous PAN Copilot skills to avoid stale command skills
-  const existing = fs.readdirSync(skillsDir, { withFileTypes: true });
-  for (const entry of existing) {
-    if (entry.isDirectory() && entry.name.startsWith(`${prefix}-`)) {
-      try { fs.rmSync(path.join(skillsDir, entry.name), { recursive: true }); } catch {}
-    }
-  }
-
-  function recurse(currentSrcDir, currentPrefix) {
-    const entries = fs.readdirSync(currentSrcDir, { withFileTypes: true });
-
-    for (const entry of entries) {
-      const srcPath = path.join(currentSrcDir, entry.name);
-      if (entry.isDirectory()) {
-        recurse(srcPath, `${currentPrefix}-${entry.name}`);
-        continue;
-      }
-
-      if (!entry.name.endsWith('.md')) {
-        continue;
-      }
-
-      const baseName = entry.name.replace('.md', '');
-      const skillName = `${currentPrefix}-${baseName}`;
-      const skillDir = path.join(skillsDir, skillName);
-      fs.mkdirSync(skillDir, { recursive: true });
-
-      let content = fs.readFileSync(srcPath, 'utf8');
-      const globalClaudeRegex = /~\/\.claude\//g;
-      const localClaudeRegex = /\.\/\.claude\//g;
-      content = content.replace(globalClaudeRegex, pathPrefix);
-      content = content.replace(localClaudeRegex, `./${getDirName(runtime)}/`);
-      content = processAttribution(content, getCommitAttribution(runtime));
-      content = convertClaudeCommandToCopilotSkill(content, skillName);
-
-      fs.writeFileSync(path.join(skillDir, 'SKILL.md'), content);
-    }
-  }
-
-  recurse(srcDir, prefix);
-}
-
-/**
- * Recursively copy directory, replacing paths in .md files
- * Deletes existing destDir first to remove orphaned files from previous versions
- * @param {string} srcDir - Source directory
- * @param {string} destDir - Destination directory
- * @param {string} pathPrefix - Path prefix for file references
- * @param {string} runtime - Target runtime ('claude', 'opencode', 'gemini', 'codex', 'copilot')
- */
-function copyWithPathReplacement(srcDir, destDir, pathPrefix, runtime, isCommand = false) {
-  const isOpencode = runtime === 'opencode';
-  const isCodex = runtime === 'codex';
-  const dirName = getDirName(runtime);
-
-  // Clean install: remove existing destination to prevent orphaned files
-  try {
-    if (fs.existsSync(destDir)) {
-      fs.rmSync(destDir, { recursive: true });
-    }
-    fs.mkdirSync(destDir, { recursive: true });
-  } catch {}
-
-  const entries = fs.readdirSync(srcDir, { withFileTypes: true });
-
-  for (const entry of entries) {
-    const srcPath = path.join(srcDir, entry.name);
-    const destPath = path.join(destDir, entry.name);
-
-    if (entry.isDirectory()) {
-      copyWithPathReplacement(srcPath, destPath, pathPrefix, runtime, isCommand);
-    } else if (entry.name.endsWith('.md')) {
-      try {
-        // Replace ~/.claude/ and ./.claude/ with runtime-appropriate paths
-        let content = fs.readFileSync(srcPath, 'utf8');
-        const globalClaudeRegex = /~\/\.claude\//g;
-        const localClaudeRegex = /\.\/\.claude\//g;
-        content = content.replace(globalClaudeRegex, pathPrefix);
-        content = content.replace(localClaudeRegex, `./${dirName}/`);
-        content = processAttribution(content, getCommitAttribution(runtime));
-
-        // Convert frontmatter for opencode compatibility
-        if (isOpencode) {
-          content = convertClaudeToOpencodeFrontmatter(content);
-          fs.writeFileSync(destPath, content);
-        } else if (runtime === 'gemini') {
-          if (isCommand) {
-            // Convert to TOML for Gemini (strip <sub> tags — terminals can't render subscript)
-            content = stripSubTags(content);
-            const tomlContent = convertClaudeToGeminiToml(content);
-            // Replace extension with .toml
-            const tomlPath = destPath.replace(/\.md$/, '.toml');
-            fs.writeFileSync(tomlPath, tomlContent);
-          } else {
-            fs.writeFileSync(destPath, content);
-          }
-        } else if (isCodex) {
-          content = convertClaudeToCodexMarkdown(content);
-          fs.writeFileSync(destPath, content);
-        } else if (runtime === 'copilot') {
-          content = convertClaudeToCopilotMarkdown(content);
-          fs.writeFileSync(destPath, content);
-        } else {
-          fs.writeFileSync(destPath, content);
-        }
-      } catch {}
-    } else {
-      try { fs.copyFileSync(srcPath, destPath); } catch {}
-    }
-  }
-}
-
-/**
- * Clean up orphaned files from previous PAN versions
- */
-function cleanupOrphanedFiles(configDir) {
-  const orphanedFiles = [
-    'hooks/pan-notify.sh',  // Removed in v1.6.x
-    'hooks/statusline.js',  // Renamed to pan-statusline.js in v1.9.0
-  ];
-
-  for (const relPath of orphanedFiles) {
-    const fullPath = path.join(configDir, relPath);
-    if (fs.existsSync(fullPath)) {
-      fs.unlinkSync(fullPath);
-      console.log(`  ${green}✓${reset} Removed orphaned ${relPath}`);
-    }
-  }
-}
-
-/**
- * Clean up orphaned hook registrations from settings.json
- */
-function cleanupOrphanedHooks(settings) {
-  const orphanedHookPatterns = [
-    'pan-notify.sh',  // Removed in v1.6.x
-    'hooks/statusline.js',  // Renamed to pan-statusline.js in v1.9.0
-    'pan-intel-index.js',  // Removed in v1.9.2
-    'pan-intel-session.js',  // Removed in v1.9.2
-    'pan-intel-prune.js',  // Removed in v1.9.2
-  ];
-
-  let cleanedHooks = false;
-
-  // Check all hook event types (Stop, SessionStart, etc.)
-  if (settings.hooks) {
-    for (const eventType of Object.keys(settings.hooks)) {
-      const hookEntries = settings.hooks[eventType];
-      if (Array.isArray(hookEntries)) {
-        // Filter out entries that contain orphaned hooks
-        const filtered = hookEntries.filter(entry => {
-          if (entry.hooks && Array.isArray(entry.hooks)) {
-            // Check if any hook in this entry matches orphaned patterns
-            const hasOrphaned = entry.hooks.some(h =>
-              h.command && orphanedHookPatterns.some(pattern => h.command.includes(pattern))
-            );
-            if (hasOrphaned) {
-              cleanedHooks = true;
-              return false;  // Remove this entry
-            }
-          }
-          return true;  // Keep this entry
-        });
-        settings.hooks[eventType] = filtered;
-      }
-    }
-  }
-
-  if (cleanedHooks) {
-    console.log(`  ${green}✓${reset} Removed orphaned hook registrations`);
-  }
-
-  // Fix #330: Update statusLine if it points to old statusline.js path
-  if (settings.statusLine && settings.statusLine.command &&
-      settings.statusLine.command.includes('statusline.js') &&
-      !settings.statusLine.command.includes('pan-statusline.js')) {
-    // Replace old path with new path
-    settings.statusLine.command = settings.statusLine.command.replace(
-      /statusline\.js/,
-      'pan-statusline.js'
-    );
-    console.log(`  ${green}✓${reset} Updated statusline path (statusline.js → pan-statusline.js)`);
-  }
-
-  return settings;
-}
-
-/**
- * Uninstall PAN from the specified directory for a specific runtime
- * Removes only PAN-specific files/directories, preserves user content
- * @param {boolean} isGlobal - Whether to uninstall from global or local
- * @param {string} runtime - Target runtime ('claude', 'opencode', 'gemini', 'codex')
- */
-function uninstall(isGlobal, runtime = 'claude') {
-  const isOpencode = runtime === 'opencode';
-  const isCodex = runtime === 'codex';
-  const isCopilot = runtime === 'copilot';
-  const dirName = getDirName(runtime);
-
-  // Get the target directory based on runtime and install type
-  const targetDir = isGlobal
-    ? getGlobalDir(runtime, explicitConfigDir)
-    : path.join(process.cwd(), dirName);
-
-  const locationLabel = isGlobal
-    ? targetDir.replace(os.homedir(), '~')
-    : targetDir.replace(process.cwd(), '.');
-
-  let runtimeLabel = 'Claude Code';
-  if (runtime === 'opencode') runtimeLabel = 'OpenCode';
-  if (runtime === 'gemini') runtimeLabel = 'Gemini';
-  if (runtime === 'codex') runtimeLabel = 'Codex';
-  if (runtime === 'copilot') runtimeLabel = 'GitHub Copilot CLI';
-
-  // Guard: never uninstall from the PAN source repository itself
-  if (path.resolve(process.cwd()) === PAN_SOURCE_ROOT) {
-    console.error(`\n  ${red}✗${reset} Refusing to uninstall from PAN's own source repository.`);
-    console.error(`  Run from your target project directory instead.\n`);
-    process.exit(1);
-  }
-
-  console.log(`  Uninstalling PAN from ${cyan}${runtimeLabel}${reset} at ${cyan}${locationLabel}${reset}\n`);
-
-  // Check if target directory exists
-  if (!fs.existsSync(targetDir)) {
-    console.log(`  ${yellow}⚠${reset} Directory does not exist: ${locationLabel}`);
-    console.log(`  Nothing to uninstall.\n`);
-    return;
-  }
-
-  let removedCount = 0;
-
-  // 1. Remove PAN commands/skills
-  if (isOpencode) {
-    // OpenCode: remove command/pan-*.md files
-    const commandDir = path.join(targetDir, 'command');
-    if (fs.existsSync(commandDir)) {
-      const files = fs.readdirSync(commandDir);
-      for (const file of files) {
-        if (file.startsWith('pan-') && file.endsWith('.md')) {
-          try { fs.unlinkSync(path.join(commandDir, file)); } catch {}
-          removedCount++;
-        }
-      }
-      console.log(`  ${green}✓${reset} Removed PAN commands from command/`);
-    }
-  } else if (isCodex || isCopilot) {
-    // Codex & Copilot CLI: remove skills/pan-*/SKILL.md skill directories
-    const skillsDir = path.join(targetDir, 'skills');
-    if (fs.existsSync(skillsDir)) {
-      let skillCount = 0;
-      const entries = fs.readdirSync(skillsDir, { withFileTypes: true });
-      for (const entry of entries) {
-        if (entry.isDirectory() && entry.name.startsWith('pan-')) {
-          try { fs.rmSync(path.join(skillsDir, entry.name), { recursive: true }); } catch {}
-          skillCount++;
-        }
-      }
-      if (skillCount > 0) {
-        removedCount++;
-        console.log(`  ${green}✓${reset} Removed ${skillCount} ${isCopilot ? 'Copilot CLI' : 'Codex'} skills`);
-      }
-    }
-  } else {
-    // Claude Code & Gemini: remove commands/pan/ directory
-    const panCommandsDir = path.join(targetDir, 'commands', 'pan');
-    if (fs.existsSync(panCommandsDir)) {
-      try { fs.rmSync(panCommandsDir, { recursive: true }); } catch {}
-      removedCount++;
-      console.log(`  ${green}✓${reset} Removed commands/pan/`);
-    }
-  }
-
-  // 2. Remove pan-wizard-core directory
-  const panDir = path.join(targetDir, 'pan-wizard-core');
-  if (fs.existsSync(panDir)) {
-    try { fs.rmSync(panDir, { recursive: true }); } catch {}
-    removedCount++;
-    console.log(`  ${green}✓${reset} Removed pan-wizard-core/`);
-  }
-
-  // 3. Remove PAN agents (pan-*.md files only)
-  const agentsDir = path.join(targetDir, 'agents');
-  if (fs.existsSync(agentsDir)) {
-    const files = fs.readdirSync(agentsDir);
-    let agentCount = 0;
-    for (const file of files) {
-      if (file.startsWith('pan-') && file.endsWith('.md')) {
-        try { fs.unlinkSync(path.join(agentsDir, file)); } catch {}
-        agentCount++;
-      }
-    }
-    if (agentCount > 0) {
-      removedCount++;
-      console.log(`  ${green}✓${reset} Removed ${agentCount} PAN agents`);
-    }
-  }
-
-  // 4. Remove PAN hooks
-  const hooksDir = path.join(targetDir, 'hooks');
-  if (fs.existsSync(hooksDir)) {
-    const panHooks = ['pan-statusline.js', 'pan-check-update.js', 'pan-check-update.sh', 'pan-context-monitor.js'];
-    let hookCount = 0;
-    for (const hook of panHooks) {
-      const hookPath = path.join(hooksDir, hook);
-      if (fs.existsSync(hookPath)) {
-        try { fs.unlinkSync(hookPath); } catch {}
-        hookCount++;
-      }
-    }
-    if (hookCount > 0) {
-      removedCount++;
-      console.log(`  ${green}✓${reset} Removed ${hookCount} PAN hooks`);
-    }
-  }
-
-  // 5. Remove PAN package.json (CommonJS mode marker)
-  const pkgJsonPath = path.join(targetDir, 'package.json');
-  if (fs.existsSync(pkgJsonPath)) {
-    try {
-      const content = fs.readFileSync(pkgJsonPath, 'utf8').trim();
-      // Only remove if it's our minimal CommonJS marker (handle formatting variations)
-      const normalized = content.replace(/\s+/g, '');
-      if (normalized === '{"type":"commonjs"}') {
-        fs.unlinkSync(pkgJsonPath);
-        removedCount++;
-        console.log(`  ${green}✓${reset} Removed PAN package.json`);
-      }
-    } catch (e) {
-      // Ignore read errors
-    }
-  }
-
-  // 6a. Clean up Copilot CLI config.json
-  if (isCopilot) {
-    const configPath = path.join(targetDir, 'config.json');
-    if (fs.existsSync(configPath)) {
-      try {
-        const config = JSON.parse(fs.readFileSync(configPath, 'utf8'));
-        let configModified = false;
-
-        // Remove PAN statusline
-        if (config.statusLine && config.statusLine.command &&
-            config.statusLine.command.includes('pan-statusline')) {
-          delete config.statusLine;
-          configModified = true;
-          console.log(`  ${green}✓${reset} Removed PAN statusline from config`);
-        }
-
-        // Remove PAN hooks from sessionStart
-        if (config.hooks && config.hooks.sessionStart) {
-          const before = config.hooks.sessionStart.length;
-          config.hooks.sessionStart = config.hooks.sessionStart.filter(h =>
-            !(h.command && h.command.includes('pan-check-update'))
-          );
-          if (config.hooks.sessionStart.length < before) {
-            configModified = true;
-            console.log(`  ${green}✓${reset} Removed PAN hooks from config`);
-          }
-          if (config.hooks.sessionStart.length === 0) {
-            delete config.hooks.sessionStart;
-          }
-        }
-
-        // Remove PAN hooks from postToolUse
-        if (config.hooks && config.hooks.postToolUse) {
-          const before = config.hooks.postToolUse.length;
-          config.hooks.postToolUse = config.hooks.postToolUse.filter(h =>
-            !(h.command && h.command.includes('pan-context-monitor'))
-          );
-          if (config.hooks.postToolUse.length < before) {
-            configModified = true;
-            console.log(`  ${green}✓${reset} Removed context monitor from config`);
-          }
-          if (config.hooks.postToolUse.length === 0) {
-            delete config.hooks.postToolUse;
-          }
-        }
-
-        if (config.hooks && Object.keys(config.hooks).length === 0) {
-          delete config.hooks;
-        }
-
-        if (configModified) {
-          if (Object.keys(config).length === 0) {
-            fs.unlinkSync(configPath);
-            console.log(`  ${green}✓${reset} Removed empty config.json`);
-          } else {
-            fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + '\n');
-          }
-          removedCount++;
-        }
-      } catch (e) {
-        // Ignore JSON parse errors
-      }
-    }
-  }
-
-  // 6b. Clean up settings.json (remove PAN hooks and statusline)
-  const settingsPath = path.join(targetDir, 'settings.json');
-  if (fs.existsSync(settingsPath)) {
-    let settings = readSettings(settingsPath);
-    let settingsModified = false;
-
-    // Remove PAN statusline if it references our hook
-    if (settings.statusLine && settings.statusLine.command &&
-        settings.statusLine.command.includes('pan-statusline')) {
-      delete settings.statusLine;
-      settingsModified = true;
-      console.log(`  ${green}✓${reset} Removed PAN statusline from settings`);
-    }
-
-    // Remove PAN hooks from SessionStart
-    if (settings.hooks && settings.hooks.SessionStart) {
-      const before = settings.hooks.SessionStart.length;
-      settings.hooks.SessionStart = settings.hooks.SessionStart.filter(entry => {
-        if (entry.hooks && Array.isArray(entry.hooks)) {
-          // Filter out PAN hooks
-          const hasPanHook = entry.hooks.some(h =>
-            h.command && (h.command.includes('pan-check-update') || h.command.includes('pan-statusline'))
-          );
-          return !hasPanHook;
-        }
-        return true;
-      });
-      if (settings.hooks.SessionStart.length < before) {
-        settingsModified = true;
-        console.log(`  ${green}✓${reset} Removed PAN hooks from settings`);
-      }
-      // Clean up empty array
-      if (settings.hooks.SessionStart.length === 0) {
-        delete settings.hooks.SessionStart;
-      }
-    }
-
-    // Remove PAN hooks from PostToolUse
-    if (settings.hooks && settings.hooks.PostToolUse) {
-      const before = settings.hooks.PostToolUse.length;
-      settings.hooks.PostToolUse = settings.hooks.PostToolUse.filter(entry => {
-        if (entry.hooks && Array.isArray(entry.hooks)) {
-          const hasPanHook = entry.hooks.some(h =>
-            h.command && h.command.includes('pan-context-monitor')
-          );
-          return !hasPanHook;
-        }
-        return true;
-      });
-      if (settings.hooks.PostToolUse.length < before) {
-        settingsModified = true;
-        console.log(`  ${green}✓${reset} Removed context monitor hook from settings`);
-      }
-      if (settings.hooks.PostToolUse.length === 0) {
-        delete settings.hooks.PostToolUse;
-      }
-    }
-
-    // Clean up empty hooks object
-    if (settings.hooks && Object.keys(settings.hooks).length === 0) {
-      delete settings.hooks;
-    }
-
-    // Remove Gemini experimental.enableAgents if PAN set it
-    if (settings.experimental && settings.experimental.enableAgents === true) {
-      delete settings.experimental.enableAgents;
-      if (Object.keys(settings.experimental).length === 0) {
-        delete settings.experimental;
-      }
-      settingsModified = true;
-      console.log(`  ${green}✓${reset} Removed experimental agents flag from settings`);
-    }
-
-    if (settingsModified) {
-      // If settings is now empty (only PAN entries existed), remove the file
-      if (Object.keys(settings).length === 0) {
-        fs.unlinkSync(settingsPath);
-        console.log(`  ${green}✓${reset} Removed empty settings.json`);
-      } else {
-        writeSettings(settingsPath, settings);
-      }
-      removedCount++;
-    }
-  }
-
-  // 6. For OpenCode, clean up permissions from opencode.json
-  if (isOpencode) {
-    // For local uninstalls, clean up ./.opencode/opencode.json
-    // For global uninstalls, clean up ~/.config/opencode/opencode.json
-    const opencodeConfigDir = isGlobal
-      ? getOpencodeGlobalDir()
-      : path.join(process.cwd(), '.opencode');
-    const configPath = path.join(opencodeConfigDir, 'opencode.json');
-    if (fs.existsSync(configPath)) {
-      try {
-        const config = JSON.parse(fs.readFileSync(configPath, 'utf8'));
-        let modified = false;
-
-        // Remove PAN permission entries
-        if (config.permission) {
-          for (const permType of ['read', 'external_directory']) {
-            if (config.permission[permType]) {
-              const keys = Object.keys(config.permission[permType]);
-              for (const key of keys) {
-                if (key.includes('pan-wizard-core')) {
-                  delete config.permission[permType][key];
-                  modified = true;
-                }
-              }
-              // Clean up empty objects
-              if (Object.keys(config.permission[permType]).length === 0) {
-                delete config.permission[permType];
-              }
-            }
-          }
-          if (Object.keys(config.permission).length === 0) {
-            delete config.permission;
-          }
-        }
-
-        if (modified) {
-          fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + '\n');
-          removedCount++;
-          console.log(`  ${green}✓${reset} Removed PAN permissions from opencode.json`);
-        }
-      } catch (e) {
-        // Ignore JSON parse errors
-      }
-    }
-  }
-
-  // 7. Remove pan-file-manifest.json
-  const manifestPath = path.join(targetDir, MANIFEST_NAME);
-  if (fs.existsSync(manifestPath)) {
-    try { fs.unlinkSync(manifestPath); } catch {}
-    removedCount++;
-    console.log(`  ${green}✓${reset} Removed ${MANIFEST_NAME}`);
-  }
-
-  // 8. Clean up empty PAN directories
-  const dirsToClean = [
-    path.join(targetDir, 'agents'),
-    path.join(targetDir, 'hooks'),
-    path.join(targetDir, 'skills'),
-    path.join(targetDir, 'commands', 'pan'),
-    path.join(targetDir, 'commands'),
-  ];
-  for (const dir of dirsToClean) {
-    try {
-      if (fs.existsSync(dir)) {
-        const remaining = fs.readdirSync(dir);
-        if (remaining.length === 0) {
-          fs.rmdirSync(dir);
-        }
-      }
-    } catch {}
-  }
-
-  if (removedCount === 0) {
-    console.log(`  ${yellow}⚠${reset} No PAN files found to remove.`);
-  }
-
-  console.log(`
-  ${green}Done!${reset} PAN has been uninstalled from ${runtimeLabel}.
-  Your other files and settings have been preserved.
-`);
-}
-
-
-/**
- * Configure OpenCode permissions to allow reading PAN reference docs
- * This prevents permission prompts when PAN accesses the pan-wizard-core directory
- * @param {boolean} isGlobal - Whether this is a global or local install
- */
-function configureOpencodePermissions(isGlobal = true) {
-  // For local installs, use ./.opencode/opencode.json
-  // For global installs, use ~/.config/opencode/opencode.json
-  const opencodeConfigDir = isGlobal
-    ? getOpencodeGlobalDir()
-    : path.join(process.cwd(), '.opencode');
-  const configPath = path.join(opencodeConfigDir, 'opencode.json');
-
-  // Ensure config directory exists
-  fs.mkdirSync(opencodeConfigDir, { recursive: true });
-
-  // Read existing config or create empty object
-  let config = {};
-  if (fs.existsSync(configPath)) {
-    try {
-      const content = fs.readFileSync(configPath, 'utf8');
-      config = parseJsonc(content);
-    } catch (e) {
-      // Cannot parse - DO NOT overwrite user's config
-      console.log(`  ${yellow}⚠${reset} Could not parse opencode.json - skipping permission config`);
-      console.log(`    ${dim}Reason: ${e.message}${reset}`);
-      console.log(`    ${dim}Your config was NOT modified. Fix the syntax manually if needed.${reset}`);
-      return;
-    }
-  }
-
-  // Ensure permission structure exists
-  if (!config.permission) {
-    config.permission = {};
-  }
-
-  // Build the PAN path using the actual config directory
-  // Use ~ shorthand if it's in the default location, otherwise use full path
-  const defaultConfigDir = path.join(os.homedir(), '.config', 'opencode');
-  const panPath = opencodeConfigDir === defaultConfigDir
-    ? '~/.config/opencode/pan-wizard/*'
-    : `${opencodeConfigDir.replace(/\\/g, '/')}/pan-wizard-core/*`;
-  
-  let modified = false;
-
-  // Configure read permission
-  if (!config.permission.read || typeof config.permission.read !== 'object') {
-    config.permission.read = {};
-  }
-  if (config.permission.read[panPath] !== 'allow') {
-    config.permission.read[panPath] = 'allow';
-    modified = true;
-  }
-
-  // Configure external_directory permission (the safety guard for paths outside project)
-  if (!config.permission.external_directory || typeof config.permission.external_directory !== 'object') {
-    config.permission.external_directory = {};
-  }
-  if (config.permission.external_directory[panPath] !== 'allow') {
-    config.permission.external_directory[panPath] = 'allow';
-    modified = true;
-  }
-
-  if (!modified) {
-    return; // Already configured
-  }
-
-  // Write config back
-  try {
-    fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + '\n');
-    console.log(`  ${green}✓${reset} Configured read permission for PAN docs`);
-  } catch (e) {
-    console.error(`  ${yellow}⚠${reset} Failed to write config: ${e.message}`);
-  }
-}
-
-/**
- * Verify a directory exists and contains files
- */
-function verifyInstalled(dirPath, description) {
-  if (!fs.existsSync(dirPath)) {
-    console.error(`  ${yellow}✗${reset} Failed to install ${description}: directory not created`);
-    return false;
-  }
-  try {
-    const entries = fs.readdirSync(dirPath);
-    if (entries.length === 0) {
-      console.error(`  ${yellow}✗${reset} Failed to install ${description}: directory is empty`);
-      return false;
-    }
-  } catch (e) {
-    console.error(`  ${yellow}✗${reset} Failed to install ${description}: ${e.message}`);
-    return false;
-  }
-  return true;
-}
-
-/**
- * Verify a file exists
- */
-function verifyFileInstalled(filePath, description) {
-  if (!fs.existsSync(filePath)) {
-    console.error(`  ${yellow}✗${reset} Failed to install ${description}: file not created`);
-    return false;
-  }
-  return true;
-}
-
-/**
- * Install to the specified directory for a specific runtime
- * @param {boolean} isGlobal - Whether to install globally or locally
- * @param {string} runtime - Target runtime ('claude', 'opencode', 'gemini', 'codex')
- */
-
-// ──────────────────────────────────────────────────────
-// Local Patch Persistence
-// ──────────────────────────────────────────────────────
-
-const PATCHES_DIR_NAME = 'pan-local-patches';
-const MANIFEST_NAME = 'pan-file-manifest.json';
-
-/**
- * Compute SHA256 hash of file contents
- */
-function fileHash(filePath) {
-  try {
-    const content = fs.readFileSync(filePath);
-    return crypto.createHash('sha256').update(content).digest('hex');
-  } catch (e) {
-    return null;
-  }
-}
-
-/**
- * Recursively collect all files in dir with their hashes
- */
-function generateManifest(dir, baseDir) {
-  if (!baseDir) baseDir = dir;
-  const manifest = {};
-  if (!fs.existsSync(dir)) return manifest;
-  const entries = fs.readdirSync(dir, { withFileTypes: true });
-  for (const entry of entries) {
-    const fullPath = path.join(dir, entry.name);
-    const relPath = path.relative(baseDir, fullPath).replace(/\\/g, '/');
-    if (entry.isDirectory()) {
-      Object.assign(manifest, generateManifest(fullPath, baseDir));
-    } else {
-      manifest[relPath] = fileHash(fullPath);
-    }
-  }
-  return manifest;
-}
-
-/**
- * Write file manifest after installation for future modification detection
- */
-function writeManifest(configDir, runtime = 'claude') {
-  const isOpencode = runtime === 'opencode';
-  const isCodex = runtime === 'codex';
-  const isCopilot = runtime === 'copilot';
-  const panDir = path.join(configDir, 'pan-wizard-core');
-  const commandsDir = path.join(configDir, 'commands', 'pan');
-  const opencodeCommandDir = path.join(configDir, 'command');
-  const codexSkillsDir = path.join(configDir, 'skills');
-  const agentsDir = path.join(configDir, 'agents');
-  const manifest = { version: pkg.version, timestamp: new Date().toISOString(), files: {} };
-
-  const panHashes = generateManifest(panDir);
-  for (const [rel, hash] of Object.entries(panHashes)) {
-    manifest.files['pan-wizard-core/' + rel] = hash;
-  }
-  if (!isOpencode && !isCodex && fs.existsSync(commandsDir)) {
-    const cmdHashes = generateManifest(commandsDir);
-    for (const [rel, hash] of Object.entries(cmdHashes)) {
-      manifest.files['commands/pan/' + rel] = hash;
-    }
-  }
-  if (isOpencode && fs.existsSync(opencodeCommandDir)) {
-    for (const file of fs.readdirSync(opencodeCommandDir)) {
-      if (file.startsWith('pan-') && file.endsWith('.md')) {
-        manifest.files['command/' + file] = fileHash(path.join(opencodeCommandDir, file));
-      }
-    }
-  }
-  if ((isCodex || isCopilot) && fs.existsSync(codexSkillsDir)) {
-    for (const skillName of listCodexSkillNames(codexSkillsDir)) {
-      const skillRoot = path.join(codexSkillsDir, skillName);
-      const skillHashes = generateManifest(skillRoot);
-      for (const [rel, hash] of Object.entries(skillHashes)) {
-        manifest.files[`skills/${skillName}/${rel}`] = hash;
-      }
-    }
-  }
-  if (fs.existsSync(agentsDir)) {
-    for (const file of fs.readdirSync(agentsDir)) {
-      if (file.startsWith('pan-') && file.endsWith('.md')) {
-        manifest.files['agents/' + file] = fileHash(path.join(agentsDir, file));
-      }
-    }
-  }
-  // Track hook scripts in manifest for modification detection during upgrades
-  const hooksDir = path.join(configDir, 'hooks');
-  if (fs.existsSync(hooksDir)) {
-    for (const file of fs.readdirSync(hooksDir)) {
-      if (file.startsWith('pan-') && file.endsWith('.js')) {
-        manifest.files['hooks/' + file] = fileHash(path.join(hooksDir, file));
-      }
-    }
-  }
-
-  try {
-    fs.writeFileSync(path.join(configDir, MANIFEST_NAME), JSON.stringify(manifest, null, 2));
-  } catch (e) {
-    console.error(`  ${yellow}⚠${reset} Failed to write manifest: ${e.message}`);
-  }
-  return manifest;
-}
-
-/**
- * Detect user-modified PAN files by comparing against install manifest.
- * Backs up modified files to pan-local-patches/ for reapply after update.
- */
-function saveLocalPatches(configDir) {
-  const manifestPath = path.join(configDir, MANIFEST_NAME);
-  if (!fs.existsSync(manifestPath)) return [];
-
-  let manifest;
-  try { manifest = JSON.parse(fs.readFileSync(manifestPath, 'utf8')); } catch { return []; }
-
-  const patchesDir = path.join(configDir, PATCHES_DIR_NAME);
-  const modified = [];
-
-  for (const [relPath, originalHash] of Object.entries(manifest.files || {})) {
-    const fullPath = path.join(configDir, relPath);
-    if (!fs.existsSync(fullPath)) continue;
-    const currentHash = fileHash(fullPath);
-    if (currentHash !== originalHash) {
-      const backupPath = path.join(patchesDir, relPath);
-      fs.mkdirSync(path.dirname(backupPath), { recursive: true });
-      fs.copyFileSync(fullPath, backupPath);
-      modified.push(relPath);
-    }
-  }
-
-  if (modified.length > 0) {
-    const meta = {
-      backed_up_at: new Date().toISOString(),
-      from_version: manifest.version,
-      files: modified
-    };
-    fs.writeFileSync(path.join(patchesDir, 'backup-meta.json'), JSON.stringify(meta, null, 2));
-    console.log('  ' + yellow + 'i' + reset + '  Found ' + modified.length + ' locally modified PAN file(s) — backed up to ' + PATCHES_DIR_NAME + '/');
-    for (const f of modified) {
-      console.log('     ' + dim + f + reset);
-    }
-  }
-  return modified;
-}
-
-/**
- * After install, report backed-up patches for user to reapply.
- */
-function reportLocalPatches(configDir, runtime = 'claude') {
-  const patchesDir = path.join(configDir, PATCHES_DIR_NAME);
-  const metaPath = path.join(patchesDir, 'backup-meta.json');
-  if (!fs.existsSync(metaPath)) return [];
-
-  let meta;
-  try { meta = JSON.parse(fs.readFileSync(metaPath, 'utf8')); } catch { return []; }
-
-  if (meta.files && meta.files.length > 0) {
-    const reapplyCommand = runtime === 'opencode'
-      ? '/pan-patches'
-      : runtime === 'codex'
-        ? '$pan-patches'
-        : '/pan:patches';
-    console.log('');
-    console.log('  ' + yellow + 'Local patches detected' + reset + ' (from v' + meta.from_version + '):');
-    for (const f of meta.files) {
-      console.log('     ' + cyan + f + reset);
-    }
-    console.log('');
-    console.log('  Your modifications are saved in ' + cyan + PATCHES_DIR_NAME + '/' + reset);
-    console.log('  Run ' + cyan + reapplyCommand + reset + ' to merge them into the new version.');
-    console.log('  Or manually compare and merge the files.');
-    console.log('');
-  }
-  return meta.files || [];
-}
-
-function install(isGlobal, runtime = 'claude') {
-  const isOpencode = runtime === 'opencode';
-  const isGemini = runtime === 'gemini';
-  const isCodex = runtime === 'codex';
-  const isCopilot = runtime === 'copilot';
-  const dirName = getDirName(runtime);
-  const src = path.join(__dirname, '..');
-
-  // Get the target directory based on runtime and install type
-  const targetDir = isGlobal
-    ? getGlobalDir(runtime, explicitConfigDir)
-    : path.join(process.cwd(), dirName);
-
-  const locationLabel = isGlobal
-    ? targetDir.replace(os.homedir(), '~')
-    : targetDir.replace(process.cwd(), '.');
-
-  // Path prefix for file references in markdown content
-  // For global installs: use full path
-  // For local installs: use relative
-  const pathPrefix = isGlobal
-    ? `${targetDir.replace(/\\/g, '/')}/`
-    : `./${dirName}/`;
-
-  let runtimeLabel = 'Claude Code';
-  if (isOpencode) runtimeLabel = 'OpenCode';
-  if (isGemini) runtimeLabel = 'Gemini';
-  if (isCodex) runtimeLabel = 'Codex';
-  if (isCopilot) runtimeLabel = 'GitHub Copilot CLI';
-
-  // Guard: never install into the PAN source repository itself
-  if (path.resolve(process.cwd()) === PAN_SOURCE_ROOT) {
-    console.error(`\n  ${red}✗${reset} Refusing to install PAN into its own source repository.`);
-    console.error(`  Run the installer from your target project directory instead.\n`);
-    console.error(`  Example: cd /path/to/my-project && node ${path.resolve(__dirname, 'install.js')} --claude --local\n`);
-    process.exit(1);
-  }
-
-  console.log(`  Installing for ${cyan}${runtimeLabel}${reset} to ${cyan}${locationLabel}${reset}\n`);
-
-  // Early writability check — fail fast before any file operations
-  try {
-    fs.mkdirSync(targetDir, { recursive: true });
-    const probe = path.join(targetDir, '.pan-write-test');
-    fs.writeFileSync(probe, '');
-    fs.unlinkSync(probe);
-  } catch (e) {
-    console.error(`  ${red}✗${reset} Cannot write to ${locationLabel}: ${e.message}`);
-    console.error(`  Check directory permissions and try again.`);
-    process.exit(1);
-  }
-
-  // Track installation failures
-  const failures = [];
-
-  // Save any locally modified PAN files before they get wiped
-  saveLocalPatches(targetDir);
-
-  // Clean up orphaned files from previous versions
-  cleanupOrphanedFiles(targetDir);
-
-  // OpenCode uses command/ (flat), Codex uses skills/, Claude/Gemini use commands/pan/
-  try {
-    if (isOpencode) {
-      // OpenCode: flat structure in command/ directory
-      const commandDir = path.join(targetDir, 'command');
-      fs.mkdirSync(commandDir, { recursive: true });
-
-      // Copy commands/pan/*.md as command/pan-*.md (flatten structure)
-      const panSrc = path.join(src, 'commands', 'pan');
-      copyFlattenedCommands(panSrc, commandDir, 'pan', pathPrefix, runtime);
-      if (verifyInstalled(commandDir, 'command/pan-*')) {
-        const count = fs.readdirSync(commandDir).filter(f => f.startsWith('pan-')).length;
-        console.log(`  ${green}✓${reset} Installed ${count} commands to command/`);
-      } else {
-        failures.push('command/pan-*');
-      }
-    } else if (isCodex) {
-      const skillsDir = path.join(targetDir, 'skills');
-      const panSrc = path.join(src, 'commands', 'pan');
-      copyCommandsAsCodexSkills(panSrc, skillsDir, 'pan', pathPrefix, runtime);
-      const installedSkillNames = listCodexSkillNames(skillsDir);
-      if (installedSkillNames.length > 0) {
-        console.log(`  ${green}✓${reset} Installed ${installedSkillNames.length} skills to skills/`);
-      } else {
-        failures.push('skills/pan-*');
-      }
-    } else if (isCopilot) {
-      const skillsDir = path.join(targetDir, 'skills');
-      const panSrc = path.join(src, 'commands', 'pan');
-      copyCommandsAsCopilotSkills(panSrc, skillsDir, 'pan', pathPrefix, runtime);
-      const installedSkills = fs.readdirSync(skillsDir, { withFileTypes: true })
-        .filter(e => e.isDirectory() && e.name.startsWith('pan-'));
-      if (installedSkills.length > 0) {
-        console.log(`  ${green}✓${reset} Installed ${installedSkills.length} skills to skills/`);
-      } else {
-        failures.push('skills/pan-*');
-      }
-    } else {
-      // Claude Code & Gemini: nested structure in commands/ directory
-      const commandsDir = path.join(targetDir, 'commands');
-      fs.mkdirSync(commandsDir, { recursive: true });
-
-      const panSrc = path.join(src, 'commands', 'pan');
-      const panDest = path.join(commandsDir, 'pan');
-      copyWithPathReplacement(panSrc, panDest, pathPrefix, runtime, true);
-      if (verifyInstalled(panDest, 'commands/pan')) {
-        console.log(`  ${green}✓${reset} Installed commands/pan`);
-      } else {
-        failures.push('commands/pan');
-      }
-    }
-  } catch (e) {
-    console.error(`  ${yellow}✗${reset} Commands install failed: ${e.message}`);
-    failures.push('commands');
-  }
-
-  // Copy pan-wizard-core skill with path replacement
-  try {
-    const skillSrc = path.join(src, 'pan-wizard-core');
-    const skillDest = path.join(targetDir, 'pan-wizard-core');
-    copyWithPathReplacement(skillSrc, skillDest, pathPrefix, runtime);
-    if (verifyInstalled(skillDest, 'pan-wizard-core')) {
-      console.log(`  ${green}✓${reset} Installed pan-wizard-core`);
-    } else {
-      failures.push('pan-wizard-core');
-    }
-  } catch (e) {
-    console.error(`  ${yellow}✗${reset} pan-wizard-core install failed: ${e.message}`);
-    failures.push('pan-wizard-core');
-  }
-
-  // Copy agents to agents directory
-  try {
-    const agentsSrc = path.join(src, 'agents');
-    if (fs.existsSync(agentsSrc)) {
-      const agentsDest = path.join(targetDir, 'agents');
-      fs.mkdirSync(agentsDest, { recursive: true });
-
-      // Remove old PAN agents (pan-*.md and pan-*.agent.md) before copying new ones
-      if (fs.existsSync(agentsDest)) {
-        for (const file of fs.readdirSync(agentsDest)) {
-          if (file.startsWith('pan-') && file.endsWith('.md')) {
-            fs.unlinkSync(path.join(agentsDest, file));
-          }
-        }
-      }
-
-      // Copy new agents
-      const agentEntries = fs.readdirSync(agentsSrc, { withFileTypes: true });
-      for (const entry of agentEntries) {
-        if (entry.isFile() && entry.name.endsWith('.md')) {
-          let content = fs.readFileSync(path.join(agentsSrc, entry.name), 'utf8');
-          // Always replace ~/.claude/ as it is the source of truth in the repo
-          const dirRegex = /~\/\.claude\//g;
-          content = content.replace(dirRegex, pathPrefix);
-          content = processAttribution(content, getCommitAttribution(runtime));
-          // Convert frontmatter for runtime compatibility
-          if (isOpencode) {
-            content = convertClaudeToOpencodeFrontmatter(content);
-          } else if (isGemini) {
-            content = convertClaudeToGeminiAgent(content);
-          } else if (isCodex) {
-            content = convertClaudeToCodexMarkdown(content);
-          } else if (isCopilot) {
-            content = convertClaudeToCopilotAgent(content);
-          }
-          // Copilot CLI uses .agent.md extension; others use .md
-          const destName = isCopilot
-            ? entry.name.replace(/\.md$/, '.agent.md')
-            : entry.name;
-          fs.writeFileSync(path.join(agentsDest, destName), content);
-        }
-      }
-      if (verifyInstalled(agentsDest, 'agents')) {
-        console.log(`  ${green}✓${reset} Installed agents`);
-      } else {
-        failures.push('agents');
-      }
-    }
-  } catch (e) {
-    console.error(`  ${yellow}✗${reset} Agents install failed: ${e.message}`);
-    failures.push('agents');
-  }
-
-  // Copy CHANGELOG.md
-  try {
-    const changelogSrc = path.join(src, 'CHANGELOG.md');
-    const changelogDest = path.join(targetDir, 'pan-wizard-core', 'CHANGELOG.md');
-    if (fs.existsSync(changelogSrc)) {
-      fs.copyFileSync(changelogSrc, changelogDest);
-      if (verifyFileInstalled(changelogDest, 'CHANGELOG.md')) {
-        console.log(`  ${green}✓${reset} Installed CHANGELOG.md`);
-      } else {
-        failures.push('CHANGELOG.md');
-      }
-    }
-  } catch (e) {
-    console.error(`  ${yellow}✗${reset} CHANGELOG install failed: ${e.message}`);
-    failures.push('CHANGELOG.md');
-  }
-
-  // Write VERSION file (with upgrade/same/downgrade detection)
-  try {
-    const versionDest = path.join(targetDir, 'pan-wizard-core', 'VERSION');
-    let versionMsg = `${pkg.version}`;
-    try {
-      const prev = fs.readFileSync(versionDest, 'utf8').trim();
-      if (prev && prev !== pkg.version) {
-        versionMsg = `${prev} → ${pkg.version}`;
-      } else if (prev === pkg.version) {
-        versionMsg = `${pkg.version} (reinstall)`;
-      }
-    } catch (_) { /* first install */ }
-    fs.writeFileSync(versionDest, pkg.version + '\n');
-    if (verifyFileInstalled(versionDest, 'VERSION')) {
-      console.log(`  ${green}✓${reset} Wrote VERSION (${versionMsg})`);
-    } else {
-      failures.push('VERSION');
-    }
-  } catch (e) {
-    console.error(`  ${yellow}✗${reset} VERSION write failed: ${e.message}`);
-    failures.push('VERSION');
-  }
-
-  if (!isCodex) {
-    // Write package.json to force CommonJS mode for PAN scripts
-    // Prevents "require is not defined" errors when project has "type": "module"
-    // Node.js walks up looking for package.json - this stops inheritance from project
-    try {
-      const pkgJsonDest = path.join(targetDir, 'package.json');
-      fs.writeFileSync(pkgJsonDest, '{"type":"commonjs"}\n');
-      console.log(`  ${green}✓${reset} Wrote package.json (CommonJS mode)`);
-    } catch (e) {
-      console.error(`  ${yellow}✗${reset} package.json write failed: ${e.message}`);
-      failures.push('package.json');
-    }
-  }
-
-  if (!isCodex && !isOpencode) {
-    // Copy hooks from dist/ (bundled with dependencies)
-    // Hooks are only supported by Claude Code, Gemini, and Copilot CLI
-    // Template paths for the target runtime (replaces '.claude' with correct config dir)
-    try {
-      const hooksSrc = path.join(src, 'hooks', 'dist');
-      if (fs.existsSync(hooksSrc)) {
-        const hooksDest = path.join(targetDir, 'hooks');
-        fs.mkdirSync(hooksDest, { recursive: true });
-        const hookEntries = fs.readdirSync(hooksSrc);
-        const configDirReplacement = getConfigDirFromHome(runtime, isGlobal);
-        for (const entry of hookEntries) {
-          const srcFile = path.join(hooksSrc, entry);
-          if (fs.statSync(srcFile).isFile()) {
-            const destFile = path.join(hooksDest, entry);
-            // Template .js files to replace '.claude' with runtime-specific config dir
-            if (entry.endsWith('.js')) {
-              let content = fs.readFileSync(srcFile, 'utf8');
-              content = content.replace(/'\.claude'/g, configDirReplacement);
-              fs.writeFileSync(destFile, content);
-            } else {
-              fs.copyFileSync(srcFile, destFile);
-            }
-          }
-        }
-        if (verifyInstalled(hooksDest, 'hooks')) {
-          console.log(`  ${green}✓${reset} Installed hooks (bundled)`);
-        } else {
-          failures.push('hooks');
-        }
-      }
-    } catch (e) {
-      console.error(`  ${yellow}✗${reset} Hooks install failed: ${e.message}`);
-      failures.push('hooks');
-    }
-  }
-
-  if (failures.length > 0) {
-    console.error(`\n  ${yellow}Installation incomplete!${reset} Failed: ${failures.join(', ')}`);
-    process.exit(1);
-  }
-
-  // Write file manifest for future modification detection
-  writeManifest(targetDir, runtime);
-  console.log(`  ${green}✓${reset} Wrote file manifest (${MANIFEST_NAME})`);
-
-  // Report any backed-up local patches
-  reportLocalPatches(targetDir, runtime);
-
-  // Post-install self-check: verify critical files exist before declaring success
-  const selfCheckIssues = [];
-  const panToolsPath = path.join(targetDir, 'pan-wizard-core', 'bin', 'pan-tools.cjs');
-  if (!fs.existsSync(panToolsPath)) selfCheckIssues.push('pan-tools.cjs missing');
-  const manifestFullPath = path.join(targetDir, MANIFEST_NAME);
-  if (fs.existsSync(manifestFullPath)) {
-    try {
-      const mfst = JSON.parse(fs.readFileSync(manifestFullPath, 'utf8'));
-      const fileCount = Object.keys(mfst.files || {}).length;
-      if (fileCount < 50) selfCheckIssues.push(`manifest has only ${fileCount} files (expected 150+)`);
-    } catch { selfCheckIssues.push('manifest unreadable'); }
-  } else {
-    selfCheckIssues.push('manifest missing');
-  }
-  if (selfCheckIssues.length > 0) {
-    console.error(`\n  ${yellow}⚠ Post-install check found issues:${reset}`);
-    for (const issue of selfCheckIssues) console.error(`    - ${issue}`);
-    console.error(`  Run ${cyan}pan-tools validate deployment${reset} for full diagnostics.\n`);
-  }
-
-  if (isCodex) {
-    return { settingsPath: null, settings: null, statuslineCommand: null, runtime };
-  }
-
-  const updateCheckCommand = isGlobal
-    ? buildHookCommand(targetDir, 'pan-check-update.js')
-    : 'node ' + dirName + '/hooks/pan-check-update.js';
-  const contextMonitorCommand = isGlobal
-    ? buildHookCommand(targetDir, 'pan-context-monitor.js')
-    : 'node ' + dirName + '/hooks/pan-context-monitor.js';
-  const statuslineCommand = isGlobal
-    ? buildHookCommand(targetDir, 'pan-statusline.js')
-    : 'node ' + dirName + '/hooks/pan-statusline.js';
-
-  // Copilot CLI uses config.json with its own hook format
-  if (isCopilot) {
-    const configPath = path.join(targetDir, 'config.json');
-    const config = readSettings(configPath);
-
-    if (!config.hooks) {
-      config.hooks = {};
-    }
-
-    // Register sessionStart hook for update checking
-    if (!config.hooks.sessionStart) {
-      config.hooks.sessionStart = [];
-    }
-    const hasPanUpdateHook = config.hooks.sessionStart.some(h =>
-      h.command && h.command.includes('pan-check-update')
-    );
-    if (!hasPanUpdateHook) {
-      config.hooks.sessionStart.push({
-        command: updateCheckCommand
-      });
-      console.log(`  ${green}✓${reset} Configured update check hook`);
-    }
-
-    // Register postToolUse hook for context monitoring
-    if (!config.hooks.postToolUse) {
-      config.hooks.postToolUse = [];
-    }
-    const hasContextHook = config.hooks.postToolUse.some(h =>
-      h.command && h.command.includes('pan-context-monitor')
-    );
-    if (!hasContextHook) {
-      config.hooks.postToolUse.push({
-        command: contextMonitorCommand
-      });
-      console.log(`  ${green}✓${reset} Configured context window monitor hook`);
-    }
-
-    writeSettings(configPath, config);
-    return { settingsPath: configPath, settings: config, statuslineCommand, runtime };
-  }
-
-  // Configure statusline and hooks in settings.json
-  // Claude Code, Gemini, OpenCode use settings.json
-  const settingsPath = path.join(targetDir, 'settings.json');
-  const settings = cleanupOrphanedHooks(readSettings(settingsPath));
-
-  // Enable experimental agents for Gemini CLI (required for custom sub-agents)
-  if (isGemini) {
-    if (!settings.experimental) {
-      settings.experimental = {};
-    }
-    if (!settings.experimental.enableAgents) {
-      settings.experimental.enableAgents = true;
-      console.log(`  ${green}✓${reset} Enabled experimental agents`);
-    }
-  }
-
-  // Configure SessionStart hook for update checking (skip for opencode)
-  if (!isOpencode) {
-    if (!settings.hooks) {
-      settings.hooks = {};
-    }
-    if (!settings.hooks.SessionStart) {
-      settings.hooks.SessionStart = [];
-    }
-
-    const hasPanUpdateHook = settings.hooks.SessionStart.some(entry =>
-      entry.hooks && entry.hooks.some(h => h.command && h.command.includes('pan-check-update'))
-    );
-
-    if (!hasPanUpdateHook) {
-      settings.hooks.SessionStart.push({
-        hooks: [
-          {
-            type: 'command',
-            command: updateCheckCommand
-          }
-        ]
-      });
-      console.log(`  ${green}✓${reset} Configured update check hook`);
-    }
-
-    // Configure PostToolUse hook for context window monitoring
-    if (!settings.hooks.PostToolUse) {
-      settings.hooks.PostToolUse = [];
-    }
-
-    const hasContextMonitorHook = settings.hooks.PostToolUse.some(entry =>
-      entry.hooks && entry.hooks.some(h => h.command && h.command.includes('pan-context-monitor'))
-    );
-
-    if (!hasContextMonitorHook) {
-      settings.hooks.PostToolUse.push({
-        hooks: [
-          {
-            type: 'command',
-            command: contextMonitorCommand
-          }
-        ]
-      });
-      console.log(`  ${green}✓${reset} Configured context window monitor hook`);
-    }
-  }
-
-  return { settingsPath, settings, statuslineCommand, runtime };
-}
-
-/**
- * Apply statusline config, then print completion message
- */
-function finishInstall(settingsPath, settings, statuslineCommand, shouldInstallStatusline, runtime = 'claude', isGlobal = true) {
-  const isOpencode = runtime === 'opencode';
-  const isCodex = runtime === 'codex';
-  const isCopilot = runtime === 'copilot';
-
-  if (shouldInstallStatusline && !isOpencode && !isCodex) {
-    if (isCopilot) {
-      // Copilot CLI: statusline stored in config.json
-      settings.statusLine = {
-        command: statuslineCommand
-      };
-    } else {
-      settings.statusLine = {
-        type: 'command',
-        command: statuslineCommand
-      };
-    }
-    console.log(`  ${green}✓${reset} Configured statusline`);
-  }
-
-  // Write settings/config when runtime supports it
-  if (!isCodex) {
-    writeSettings(settingsPath, settings);
-  }
-
-  // Configure OpenCode permissions
-  if (isOpencode) {
-    configureOpencodePermissions(isGlobal);
-  }
-
-  let program = 'Claude Code';
-  if (runtime === 'opencode') program = 'OpenCode';
-  if (runtime === 'gemini') program = 'Gemini';
-  if (runtime === 'codex') program = 'Codex';
-  if (runtime === 'copilot') program = 'GitHub Copilot CLI';
-
-  let command = '/pan:new-project';
-  if (runtime === 'opencode') command = '/pan-new-project';
-  if (runtime === 'codex') command = '$pan-new-project';
-  if (runtime === 'copilot') command = '/pan-new-project';
-  console.log(`
-  ${green}Done!${reset} Open a blank directory in ${program} and run ${cyan}${command}${reset}.
-
-  ${cyan}Join the community:${reset} https://discord.gg/pan-wizard
-`);
-}
-
-/**
- * Handle statusline configuration with optional prompt
- */
-function handleStatusline(settings, isInteractive, callback) {
-  const hasExisting = settings.statusLine != null;
-
-  if (!hasExisting) {
-    callback(true);
-    return;
-  }
-
-  if (forceStatusline) {
-    callback(true);
-    return;
-  }
-
-  if (!isInteractive) {
-    console.log(`  ${yellow}⚠${reset} Skipping statusline (already configured)`);
-    console.log(`    Use ${cyan}--force-statusline${reset} to replace\n`);
-    callback(false);
-    return;
-  }
-
-  const existingCmd = settings.statusLine.command || settings.statusLine.url || '(custom)';
-
-  const rl = readline.createInterface({
-    input: process.stdin,
-    output: process.stdout
-  });
-
-  console.log(`
-  ${yellow}⚠${reset} Existing statusline detected\n
-  Your current statusline:
-    ${dim}command: ${existingCmd}${reset}
-
-  PAN includes a statusline showing:
-    • Model name
-    • Current task (from todo list)
-    • Context window usage (color-coded)
-
-  ${cyan}1${reset}) Keep existing
-  ${cyan}2${reset}) Replace with PAN statusline
-`);
-
-  rl.question(`  Choice ${dim}[1]${reset}: `, (answer) => {
-    rl.close();
-    const choice = answer.trim() || '1';
-    callback(choice === '2');
-  });
-}
-
-/**
- * Prompt for runtime selection
- */
-function promptRuntime(callback) {
-  const rl = readline.createInterface({
-    input: process.stdin,
-    output: process.stdout
-  });
-
-  let answered = false;
-
-  rl.on('close', () => {
-    if (!answered) {
-      answered = true;
-      console.log(`\n  ${yellow}Installation cancelled${reset}\n`);
-      process.exit(0);
-    }
-  });
-
-  console.log(`  ${yellow}Which runtime(s) would you like to install for?${reset}\n\n  ${cyan}1${reset}) Claude Code  ${dim}(~/.claude)${reset}
-  ${cyan}2${reset}) OpenCode     ${dim}(~/.config/opencode)${reset} - open source, free models
-  ${cyan}3${reset}) Gemini       ${dim}(~/.gemini)${reset}
-  ${cyan}4${reset}) Codex        ${dim}(~/.codex)${reset}
-  ${cyan}5${reset}) Copilot CLI  ${dim}(~/.copilot)${reset} - GitHub's terminal agent
-  ${cyan}6${reset}) All
-`);
-
-  rl.question(`  Choice ${dim}[1]${reset}: `, (answer) => {
-    answered = true;
-    rl.close();
-    const choice = answer.trim() || '1';
-    if (choice === '6') {
-      callback(['claude', 'opencode', 'gemini', 'codex', 'copilot']);
-    } else if (choice === '5') {
-      callback(['copilot']);
-    } else if (choice === '4') {
-      callback(['codex']);
-    } else if (choice === '3') {
-      callback(['gemini']);
-    } else if (choice === '2') {
-      callback(['opencode']);
-    } else {
-      callback(['claude']);
-    }
-  });
-}
-
-/**
- * Prompt for install location
- */
-function promptLocation(runtimes) {
-  if (!process.stdin.isTTY) {
-    console.log(`  ${yellow}Non-interactive terminal detected, defaulting to local install${reset}\n`);
-    installAllRuntimes(runtimes, false, false);
-    return;
-  }
-
-  const rl = readline.createInterface({
-    input: process.stdin,
-    output: process.stdout
-  });
-
-  let answered = false;
-
-  rl.on('close', () => {
-    if (!answered) {
-      answered = true;
-      console.log(`\n  ${yellow}Installation cancelled${reset}\n`);
-      process.exit(0);
-    }
-  });
-
-  const pathExamples = runtimes.map(r => {
-    const globalPath = getGlobalDir(r, explicitConfigDir);
-    return globalPath.replace(os.homedir(), '~');
-  }).join(', ');
-
-  const localExamples = runtimes.map(r => `./${getDirName(r)}`).join(', ');
-
-  console.log(`  ${yellow}Where would you like to install?${reset}\n\n  ${cyan}1${reset}) Local  ${dim}(${localExamples})${reset} - this project only
-  ${cyan}2${reset}) Global ${dim}(${pathExamples})${reset} - available in all projects
-`);
-
-  rl.question(`  Choice ${dim}[1]${reset}: `, (answer) => {
-    answered = true;
-    rl.close();
-    const choice = answer.trim() || '1';
-    const isGlobal = choice === '2';
-    installAllRuntimes(runtimes, isGlobal, true);
-  });
-}
-
-/**
- * Install PAN for all selected runtimes
- */
-function installAllRuntimes(runtimes, isGlobal, isInteractive) {
-  const results = [];
-
-  for (const runtime of runtimes) {
-    const result = install(isGlobal, runtime);
-    results.push(result);
-  }
-
-  const statuslineRuntimes = ['claude', 'gemini', 'copilot'];
-  const primaryStatuslineResult = results.find(r => statuslineRuntimes.includes(r.runtime));
-
-  const finalize = (shouldInstallStatusline) => {
-    for (const result of results) {
-      const useStatusline = statuslineRuntimes.includes(result.runtime) && shouldInstallStatusline;
-      finishInstall(
-        result.settingsPath,
-        result.settings,
-        result.statuslineCommand,
-        useStatusline,
-        result.runtime,
-        isGlobal
-      );
-    }
-  };
-
-  if (primaryStatuslineResult) {
-    handleStatusline(primaryStatuslineResult.settings, isInteractive, finalize);
-  } else {
-    finalize(false);
-  }
-}
-
-// Main logic
-if (hasGlobal && hasLocal) {
-  console.error(`  ${yellow}Cannot specify both --global and --local${reset}`);
-  process.exit(1);
-} else if (explicitConfigDir && hasLocal) {
-  console.error(`  ${yellow}Cannot use --config-dir with --local${reset}`);
-  process.exit(1);
-} else if (hasUninstall) {
-  if (!hasGlobal && !hasLocal) {
-    console.error(`  ${yellow}--uninstall requires --global or --local${reset}`);
-    process.exit(1);
-  }
-  const runtimes = selectedRuntimes.length > 0 ? selectedRuntimes : ['claude'];
-  for (const runtime of runtimes) {
-    uninstall(hasGlobal, runtime);
-  }
-} else if (selectedRuntimes.length > 0) {
-  if (!hasGlobal && !hasLocal) {
-    promptLocation(selectedRuntimes);
-  } else {
-    installAllRuntimes(selectedRuntimes, hasGlobal, false);
-  }
-} else if (hasGlobal || hasLocal) {
-  // Default to Claude if no runtime specified but location is
-  installAllRuntimes(['claude'], hasGlobal, false);
-} else {
-  // Interactive
-  if (!process.stdin.isTTY) {
-    console.log(`  ${yellow}Non-interactive terminal detected, defaulting to Claude Code local install${reset}\n`);
-    installAllRuntimes(['claude'], false, false);
-  } else {
-    promptRuntime((runtimes) => {
-      promptLocation(runtimes);
-    });
-  }
-}
+#!/usr/bin/env node
+
+const fs = require('fs');
+const path = require('path');
+const os = require('os');
+const readline = require('readline');
+const crypto = require('crypto');
+
+// Extracted pure functions (testable independently)
+const lib = require('./install-lib.cjs');
+const {
+  colorNameToHex, claudeToOpencodeTools, claudeToGeminiTools, claudeToCopilotTools,
+  getDirName, getConfigDirFromHome, expandTilde, toSingleLine, yamlQuote, buildHookCommand,
+  extractFrontmatterAndBody, extractFrontmatterField,
+  convertToolName, convertGeminiToolName, convertCopilotToolName,
+  convertSlashCommandsToCodexSkillMentions, convertSlashCommandsToCopilotSkillMentions,
+  convertClaudeToCodexMarkdown, convertClaudeToCopilotMarkdown,
+  convertClaudeToOpencodeFrontmatter, convertClaudeToGeminiToml, convertClaudeToGeminiAgent,
+  rewriteAskUserQuestionForCopilot, stripSubTags,
+  getCodexSkillAdapterHeader, convertClaudeCommandToCodexSkill,
+  getCopilotSkillAdapterHeader, convertClaudeCommandToCopilotSkill, convertClaudeToCopilotAgent,
+  processAttribution, parseJsonc,
+  detectModelCapabilities, buildClaudeSkillShim, stripThinkingFrontmatter,
+} = lib;
+
+// Colors
+const cyan = '\x1b[36m';
+const green = '\x1b[32m';
+const yellow = '\x1b[33m';
+const red = '\x1b[31m';
+const dim = '\x1b[2m';
+const reset = '\x1b[0m';
+
+// Get version from package.json
+const pkg = require('../package.json');
+
+// Source repo root — prevent installing PAN into its own source directory
+const PAN_SOURCE_ROOT = path.resolve(__dirname, '..');
+// Windows paths are case-insensitive; normalize for comparison
+const normPath = p => process.platform === 'win32' ? p.toLowerCase() : p;
+
+// Parse args
+const args = process.argv.slice(2);
+const hasGlobal = args.includes('--global') || args.includes('-g');
+const hasLocal = args.includes('--local') || args.includes('-l');
+const hasOpencode = args.includes('--opencode');
+const hasClaude = args.includes('--claude');
+const hasGemini = args.includes('--gemini');
+const hasCodex = args.includes('--codex');
+const hasCopilot = args.includes('--copilot');
+const hasBoth = args.includes('--both'); // Legacy flag, keeps working
+const hasAll = args.includes('--all');
+const hasUninstall = args.includes('--uninstall') || args.includes('-u');
+
+// Runtime selection - can be set by flags or interactive prompt
+let selectedRuntimes = [];
+if (hasAll) {
+  selectedRuntimes = ['claude', 'opencode', 'gemini', 'codex', 'copilot'];
+} else if (hasBoth) {
+  selectedRuntimes = ['claude', 'opencode'];
+} else {
+  if (hasOpencode) selectedRuntimes.push('opencode');
+  if (hasClaude) selectedRuntimes.push('claude');
+  if (hasGemini) selectedRuntimes.push('gemini');
+  if (hasCodex) selectedRuntimes.push('codex');
+  if (hasCopilot) selectedRuntimes.push('copilot');
+}
+
+/**
+ * Get the global config directory for OpenCode
+ * OpenCode follows XDG Base Directory spec and uses ~/.config/opencode/
+ * Priority: OPENCODE_CONFIG_DIR > dirname(OPENCODE_CONFIG) > XDG_CONFIG_HOME/opencode > ~/.config/opencode
+ */
+function getOpencodeGlobalDir() {
+  // 1. Explicit OPENCODE_CONFIG_DIR env var
+  if (process.env.OPENCODE_CONFIG_DIR) {
+    return expandTilde(process.env.OPENCODE_CONFIG_DIR);
+  }
+  
+  // 2. OPENCODE_CONFIG env var (use its directory)
+  if (process.env.OPENCODE_CONFIG) {
+    return path.dirname(expandTilde(process.env.OPENCODE_CONFIG));
+  }
+  
+  // 3. XDG_CONFIG_HOME/opencode
+  if (process.env.XDG_CONFIG_HOME) {
+    return path.join(expandTilde(process.env.XDG_CONFIG_HOME), 'opencode');
+  }
+  
+  // 4. Default: ~/.config/opencode (XDG default)
+  return path.join(os.homedir(), '.config', 'opencode');
+}
+
+/**
+ * Get the global config directory for a runtime
+ * @param {string} runtime - 'claude', 'opencode', 'gemini', or 'codex'
+ * @param {string|null} explicitDir - Explicit directory from --config-dir flag
+ */
+function getGlobalDir(runtime, explicitDir = null) {
+  if (runtime === 'opencode') {
+    // For OpenCode, --config-dir overrides env vars
+    if (explicitDir) {
+      return expandTilde(explicitDir);
+    }
+    return getOpencodeGlobalDir();
+  }
+  
+  if (runtime === 'gemini') {
+    // Gemini: --config-dir > GEMINI_CONFIG_DIR > ~/.gemini
+    if (explicitDir) {
+      return expandTilde(explicitDir);
+    }
+    if (process.env.GEMINI_CONFIG_DIR) {
+      return expandTilde(process.env.GEMINI_CONFIG_DIR);
+    }
+    return path.join(os.homedir(), '.gemini');
+  }
+
+  if (runtime === 'codex') {
+    // Codex: --config-dir > CODEX_HOME > ~/.codex
+    if (explicitDir) {
+      return expandTilde(explicitDir);
+    }
+    if (process.env.CODEX_HOME) {
+      return expandTilde(process.env.CODEX_HOME);
+    }
+    return path.join(os.homedir(), '.codex');
+  }
+
+  if (runtime === 'copilot') {
+    // Copilot CLI: --config-dir > COPILOT_CONFIG_DIR > ~/.copilot
+    if (explicitDir) {
+      return expandTilde(explicitDir);
+    }
+    if (process.env.COPILOT_CONFIG_DIR) {
+      return expandTilde(process.env.COPILOT_CONFIG_DIR);
+    }
+    return path.join(os.homedir(), '.copilot');
+  }
+
+  // Claude Code: --config-dir > CLAUDE_CONFIG_DIR > ~/.claude
+  if (explicitDir) {
+    return expandTilde(explicitDir);
+  }
+  if (process.env.CLAUDE_CONFIG_DIR) {
+    return expandTilde(process.env.CLAUDE_CONFIG_DIR);
+  }
+  return path.join(os.homedir(), '.claude');
+}
+
+const banner = '\n' +
+  cyan + '  ██████╗  █████╗ ███╗   ██╗\n' +
+  '  ██╔══██╗██╔══██╗████╗  ██║\n' +
+  '  ██████╔╝███████║██╔██╗ ██║\n' +
+  '  ██╔═══╝ ██╔══██║██║╚██╗██║\n' +
+  '  ██║     ██║  ██║██║ ╚████║\n' +
+  '  ╚═╝     ╚═╝  ╚═╝╚═╝  ╚═══╝' + reset + '\n' +
+  '\n' +
+  '  PAN Wizard ' + dim + 'v' + pkg.version + reset + '\n' +
+  '  A lightweight workflow automation and context engineering\n' +
+  '  system for Claude Code, OpenCode, Gemini, Codex, and Copilot CLI.\n';
+
+// Parse --config-dir argument
+function parseConfigDirArg() {
+  const configDirIndex = args.findIndex(arg => arg === '--config-dir' || arg === '-c');
+  if (configDirIndex !== -1) {
+    const nextArg = args[configDirIndex + 1];
+    // Error if --config-dir is provided without a value or next arg is another flag
+    if (!nextArg || nextArg.startsWith('-')) {
+      console.error(`  ${yellow}--config-dir requires a path argument${reset}`);
+      process.exit(1);
+    }
+    return nextArg;
+  }
+  // Also handle --config-dir=value format
+  const configDirArg = args.find(arg => arg.startsWith('--config-dir=') || arg.startsWith('-c='));
+  if (configDirArg) {
+    const value = configDirArg.split('=')[1];
+    if (!value) {
+      console.error(`  ${yellow}--config-dir requires a non-empty path${reset}`);
+      process.exit(1);
+    }
+    return value;
+  }
+  return null;
+}
+const explicitConfigDir = parseConfigDirArg();
+const hasHelp = args.includes('--help') || args.includes('-h');
+const forceStatusline = args.includes('--force-statusline');
+
+console.log(banner);
+
+// Show help if requested
+if (hasHelp) {
+  console.log(`  ${yellow}Usage:${reset} npx pan-wizard [options]\n\n  ${yellow}Options:${reset}\n    ${cyan}-l, --local${reset}               Install locally to current directory (default)\n    ${cyan}-g, --global${reset}              Install globally to config directory\n    ${cyan}--claude${reset}                  Install for Claude Code only\n    ${cyan}--opencode${reset}                Install for OpenCode only\n    ${cyan}--gemini${reset}                  Install for Gemini only\n    ${cyan}--codex${reset}                   Install for Codex only\n    ${cyan}--all${reset}                     Install for all runtimes\n    ${cyan}-u, --uninstall${reset}           Uninstall PAN (remove all PAN files)\n    ${cyan}-c, --config-dir <path>${reset}   Specify custom config directory\n    ${cyan}-h, --help${reset}                Show this help message\n    ${cyan}--force-statusline${reset}        Replace existing statusline config\n\n  ${yellow}Examples:${reset}\n    ${dim}# Interactive install (prompts for runtime; installs project-level)${reset}\n    npx pan-wizard\n\n    ${dim}# Install for Claude Code in current project (default, --local implied)${reset}\n    npx pan-wizard --claude\n\n    ${dim}# Install for all runtimes in current project${reset}\n    npx pan-wizard --all --local\n\n    ${dim}# Install globally (available in all projects)${reset}\n    npx pan-wizard --claude --global\n\n    ${dim}# Install for Gemini globally${reset}\n    npx pan-wizard --gemini --global\n\n    ${dim}# Install to custom config directory${reset}\n    npx pan-wizard --codex --global --config-dir ~/.codex-work\n\n    ${dim}# Uninstall PAN from Codex globally${reset}\n    npx pan-wizard --codex --global --uninstall\n\n  ${yellow}Notes:${reset}\n    By default, PAN installs into the current project directory only.\n    Use --global to install system-wide (writes to ~/.claude, ~/.gemini, etc.).\n    The --config-dir option takes priority over CLAUDE_CONFIG_DIR / GEMINI_CONFIG_DIR / CODEX_HOME.\n`);
+  process.exit(0);
+}
+
+/**
+ * Read and parse settings.json, returning empty object if it doesn't exist
+ */
+function readSettings(settingsPath) {
+  try {
+    return JSON.parse(fs.readFileSync(settingsPath, 'utf8'));
+  } catch {
+    return {};
+  }
+}
+
+/**
+ * Write settings.json with proper formatting
+ */
+function writeSettings(settingsPath, settings) {
+  try {
+    fs.writeFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\n');
+  } catch (e) {
+    console.error(`  ${yellow}⚠${reset} Failed to write settings: ${e.message}`);
+  }
+}
+
+// Cache for attribution settings (populated once per runtime during install)
+const attributionCache = new Map();
+
+/**
+ * Get commit attribution setting for a runtime
+ * @param {string} runtime - 'claude', 'opencode', 'gemini', or 'codex'
+ * @returns {null|undefined|string} null = remove, undefined = keep default, string = custom
+ */
+function getCommitAttribution(runtime) {
+  // Return cached value if available
+  if (attributionCache.has(runtime)) {
+    return attributionCache.get(runtime);
+  }
+
+  let result;
+
+  if (runtime === 'opencode') {
+    const config = readSettings(path.join(getGlobalDir('opencode', null), 'opencode.json'));
+    result = config.disable_ai_attribution === true ? null : undefined;
+  } else if (runtime === 'gemini') {
+    // Gemini: check gemini settings.json for attribution config
+    const settings = readSettings(path.join(getGlobalDir('gemini', explicitConfigDir), 'settings.json'));
+    if (!settings.attribution || settings.attribution.commit === undefined) {
+      result = undefined;
+    } else if (settings.attribution.commit === '') {
+      result = null;
+    } else {
+      result = settings.attribution.commit;
+    }
+  } else if (runtime === 'claude') {
+    // Claude Code
+    const settings = readSettings(path.join(getGlobalDir('claude', explicitConfigDir), 'settings.json'));
+    if (!settings.attribution || settings.attribution.commit === undefined) {
+      result = undefined;
+    } else if (settings.attribution.commit === '') {
+      result = null;
+    } else {
+      result = settings.attribution.commit;
+    }
+  } else if (runtime === 'copilot') {
+    // Copilot CLI: check config.json for attribution setting
+    const config = readSettings(path.join(getGlobalDir('copilot', explicitConfigDir), 'config.json'));
+    if (!config.attribution || config.attribution.commit === undefined) {
+      result = undefined;
+    } else if (config.attribution.commit === '') {
+      result = null;
+    } else {
+      result = config.attribution.commit;
+    }
+  } else {
+    // Codex currently has no attribution setting equivalent
+    result = undefined;
+  }
+
+  // Cache and return
+  attributionCache.set(runtime, result);
+  return result;
+}
+
+// processAttribution, parseJsonc, and all pure converter functions
+// are provided by install-lib.cjs (see require at top of file).
+
+/**
+ * Copy commands to a flat structure for OpenCode
+ * OpenCode expects: command/pan-help.md (invoked as /pan-help)
+ * Source structure: commands/pan/help.md
+ * 
+ * @param {string} srcDir - Source directory (e.g., commands/pan/)
+ * @param {string} destDir - Destination directory (e.g., command/)
+ * @param {string} prefix - Prefix for filenames (e.g., 'pan')
+ * @param {string} pathPrefix - Path prefix for file references
+ * @param {string} runtime - Target runtime ('claude' or 'opencode')
+ */
+function copyFlattenedCommands(srcDir, destDir, prefix, pathPrefix, runtime) {
+  if (!fs.existsSync(srcDir)) {
+    return;
+  }
+  
+  // Remove old pan-*.md files before copying new ones
+  if (fs.existsSync(destDir)) {
+    for (const file of fs.readdirSync(destDir)) {
+      if (file.startsWith(`${prefix}-`) && file.endsWith('.md')) {
+        try { fs.unlinkSync(path.join(destDir, file)); } catch {}
+      }
+    }
+  } else {
+    try { fs.mkdirSync(destDir, { recursive: true }); } catch {}
+  }
+  
+  const entries = fs.readdirSync(srcDir, { withFileTypes: true });
+  
+  for (const entry of entries) {
+    const srcPath = path.join(srcDir, entry.name);
+    
+    if (entry.isDirectory()) {
+      // Recurse into subdirectories, adding to prefix
+      // e.g., commands/pan/debug/start.md -> command/pan-debug-start.md
+      copyFlattenedCommands(srcPath, destDir, `${prefix}-${entry.name}`, pathPrefix, runtime);
+    } else if (entry.name.endsWith('.md')) {
+      // Flatten: help.md -> pan-help.md
+      const baseName = entry.name.replace('.md', '');
+      const destName = `${prefix}-${baseName}.md`;
+      const destPath = path.join(destDir, destName);
+
+      let content = fs.readFileSync(srcPath, 'utf8');
+      const globalClaudeRegex = /~\/\.claude\//g;
+      const localClaudeRegex = /\.\/\.claude\//g;
+      const opencodeDirRegex = /~\/\.opencode\//g;
+      content = content.replace(globalClaudeRegex, pathPrefix);
+      content = content.replace(localClaudeRegex, `./${getDirName(runtime)}/`);
+      content = content.replace(opencodeDirRegex, pathPrefix);
+      content = processAttribution(content, getCommitAttribution(runtime));
+      content = convertClaudeToOpencodeFrontmatter(content);
+
+      fs.writeFileSync(destPath, content);
+    }
+  }
+}
+
+function listCodexSkillNames(skillsDir, prefix = 'pan-') {
+  if (!fs.existsSync(skillsDir)) return [];
+  const entries = fs.readdirSync(skillsDir, { withFileTypes: true });
+  return entries
+    .filter(entry => entry.isDirectory() && entry.name.startsWith(prefix))
+    .filter(entry => fs.existsSync(path.join(skillsDir, entry.name, 'SKILL.md')))
+    .map(entry => entry.name)
+    .sort();
+}
+
+function copyCommandsAsCodexSkills(srcDir, skillsDir, prefix, pathPrefix, runtime) {
+  if (!fs.existsSync(srcDir)) {
+    return;
+  }
+
+  try { fs.mkdirSync(skillsDir, { recursive: true }); } catch {}
+
+  // Remove previous PAN Codex skills to avoid stale command skills.
+  const existing = fs.readdirSync(skillsDir, { withFileTypes: true });
+  for (const entry of existing) {
+    if (entry.isDirectory() && entry.name.startsWith(`${prefix}-`)) {
+      try { fs.rmSync(path.join(skillsDir, entry.name), { recursive: true }); } catch {}
+    }
+  }
+
+  function recurse(currentSrcDir, currentPrefix) {
+    const entries = fs.readdirSync(currentSrcDir, { withFileTypes: true });
+
+    for (const entry of entries) {
+      const srcPath = path.join(currentSrcDir, entry.name);
+      if (entry.isDirectory()) {
+        recurse(srcPath, `${currentPrefix}-${entry.name}`);
+        continue;
+      }
+
+      if (!entry.name.endsWith('.md')) {
+        continue;
+      }
+
+      const baseName = entry.name.replace('.md', '');
+      const skillName = `${currentPrefix}-${baseName}`;
+      const skillDir = path.join(skillsDir, skillName);
+      fs.mkdirSync(skillDir, { recursive: true });
+
+      let content = fs.readFileSync(srcPath, 'utf8');
+      const globalClaudeRegex = /~\/\.claude\//g;
+      const localClaudeRegex = /\.\/\.claude\//g;
+      const codexDirRegex = /~\/\.codex\//g;
+      content = content.replace(globalClaudeRegex, pathPrefix);
+      content = content.replace(localClaudeRegex, `./${getDirName(runtime)}/`);
+      content = content.replace(codexDirRegex, pathPrefix);
+      content = processAttribution(content, getCommitAttribution(runtime));
+      content = convertClaudeCommandToCodexSkill(content, skillName);
+
+      fs.writeFileSync(path.join(skillDir, 'SKILL.md'), content);
+    }
+  }
+
+  recurse(srcDir, prefix);
+}
+
+/**
+ * Copy PAN commands as Copilot CLI skills.
+ * Creates skills/pan-{name}/SKILL.md directory structure.
+ * Similar to copyCommandsAsCodexSkills but uses Copilot CLI converters.
+ */
+function copyCommandsAsCopilotSkills(srcDir, skillsDir, prefix, pathPrefix, runtime) {
+  if (!fs.existsSync(srcDir)) {
+    return;
+  }
+
+  try { fs.mkdirSync(skillsDir, { recursive: true }); } catch {}
+
+  // Remove previous PAN Copilot skills to avoid stale command skills
+  const existing = fs.readdirSync(skillsDir, { withFileTypes: true });
+  for (const entry of existing) {
+    if (entry.isDirectory() && entry.name.startsWith(`${prefix}-`)) {
+      try { fs.rmSync(path.join(skillsDir, entry.name), { recursive: true }); } catch {}
+    }
+  }
+
+  function recurse(currentSrcDir, currentPrefix) {
+    const entries = fs.readdirSync(currentSrcDir, { withFileTypes: true });
+
+    for (const entry of entries) {
+      const srcPath = path.join(currentSrcDir, entry.name);
+      if (entry.isDirectory()) {
+        recurse(srcPath, `${currentPrefix}-${entry.name}`);
+        continue;
+      }
+
+      if (!entry.name.endsWith('.md')) {
+        continue;
+      }
+
+      const baseName = entry.name.replace('.md', '');
+      const skillName = `${currentPrefix}-${baseName}`;
+      const skillDir = path.join(skillsDir, skillName);
+      fs.mkdirSync(skillDir, { recursive: true });
+
+      let content = fs.readFileSync(srcPath, 'utf8');
+      const globalClaudeRegex = /~\/\.claude\//g;
+      const localClaudeRegex = /\.\/\.claude\//g;
+      content = content.replace(globalClaudeRegex, pathPrefix);
+      content = content.replace(localClaudeRegex, `./${getDirName(runtime)}/`);
+      content = processAttribution(content, getCommitAttribution(runtime));
+      content = convertClaudeCommandToCopilotSkill(content, skillName);
+
+      fs.writeFileSync(path.join(skillDir, 'SKILL.md'), content);
+    }
+  }
+
+  recurse(srcDir, prefix);
+}
+
+/**
+ * Recursively copy directory, replacing paths in .md files
+ * Deletes existing destDir first to remove orphaned files from previous versions
+ * @param {string} srcDir - Source directory
+ * @param {string} destDir - Destination directory
+ * @param {string} pathPrefix - Path prefix for file references
+ * @param {string} runtime - Target runtime ('claude', 'opencode', 'gemini', 'codex', 'copilot')
+ */
+function copyWithPathReplacement(srcDir, destDir, pathPrefix, runtime, isCommand = false) {
+  const isOpencode = runtime === 'opencode';
+  const isCodex = runtime === 'codex';
+  const dirName = getDirName(runtime);
+
+  // Clean install: remove existing destination to prevent orphaned files
+  try {
+    if (fs.existsSync(destDir)) {
+      fs.rmSync(destDir, { recursive: true });
+    }
+    fs.mkdirSync(destDir, { recursive: true });
+  } catch {}
+
+  const entries = fs.readdirSync(srcDir, { withFileTypes: true });
+
+  for (const entry of entries) {
+    const srcPath = path.join(srcDir, entry.name);
+    const destPath = path.join(destDir, entry.name);
+
+    if (entry.isDirectory()) {
+      copyWithPathReplacement(srcPath, destPath, pathPrefix, runtime, isCommand);
+    } else if (entry.name.endsWith('.md')) {
+      try {
+        // Replace ~/.claude/ and ./.claude/ with runtime-appropriate paths
+        let content = fs.readFileSync(srcPath, 'utf8');
+        const globalClaudeRegex = /~\/\.claude\//g;
+        const localClaudeRegex = /\.\/\.claude\//g;
+        content = content.replace(globalClaudeRegex, pathPrefix);
+        content = content.replace(localClaudeRegex, `./${dirName}/`);
+        content = processAttribution(content, getCommitAttribution(runtime));
+
+        // Convert frontmatter for opencode compatibility
+        if (isOpencode) {
+          content = convertClaudeToOpencodeFrontmatter(content);
+          fs.writeFileSync(destPath, content);
+        } else if (runtime === 'gemini') {
+          if (isCommand) {
+            // Convert to TOML for Gemini (strip <sub> tags — terminals can't render subscript)
+            content = stripSubTags(content);
+            const tomlContent = convertClaudeToGeminiToml(content);
+            // Replace extension with .toml
+            const tomlPath = destPath.replace(/\.md$/, '.toml');
+            fs.writeFileSync(tomlPath, tomlContent);
+          } else {
+            fs.writeFileSync(destPath, content);
+          }
+        } else if (isCodex) {
+          content = convertClaudeToCodexMarkdown(content);
+          fs.writeFileSync(destPath, content);
+        } else if (runtime === 'copilot') {
+          content = convertClaudeToCopilotMarkdown(content);
+          fs.writeFileSync(destPath, content);
+        } else {
+          fs.writeFileSync(destPath, content);
+        }
+      } catch {}
+    } else {
+      try { fs.copyFileSync(srcPath, destPath); } catch {}
+    }
+  }
+}
+
+/**
+ * Clean up orphaned files from previous PAN versions
+ */
+function cleanupOrphanedFiles(configDir) {
+  const orphanedFiles = [
+    'hooks/pan-notify.sh',  // Removed in v1.6.x
+    'hooks/statusline.js',  // Renamed to pan-statusline.js in v1.9.0
+  ];
+
+  for (const relPath of orphanedFiles) {
+    const fullPath = path.join(configDir, relPath);
+    if (fs.existsSync(fullPath)) {
+      fs.unlinkSync(fullPath);
+      console.log(`  ${green}✓${reset} Removed orphaned ${relPath}`);
+    }
+  }
+}
+
+/**
+ * Clean up orphaned hook registrations from settings.json
+ */
+function cleanupOrphanedHooks(settings) {
+  const orphanedHookPatterns = [
+    'pan-notify.sh',  // Removed in v1.6.x
+    'hooks/statusline.js',  // Renamed to pan-statusline.js in v1.9.0
+    'pan-intel-index.js',  // Removed in v1.9.2
+    'pan-intel-session.js',  // Removed in v1.9.2
+    'pan-intel-prune.js',  // Removed in v1.9.2
+  ];
+
+  let cleanedHooks = false;
+
+  // Check all hook event types (Stop, SessionStart, etc.)
+  if (settings.hooks) {
+    for (const eventType of Object.keys(settings.hooks)) {
+      const hookEntries = settings.hooks[eventType];
+      if (Array.isArray(hookEntries)) {
+        // Filter out entries that contain orphaned hooks
+        const filtered = hookEntries.filter(entry => {
+          if (entry.hooks && Array.isArray(entry.hooks)) {
+            // Check if any hook in this entry matches orphaned patterns
+            const hasOrphaned = entry.hooks.some(h =>
+              h.command && orphanedHookPatterns.some(pattern => h.command.includes(pattern))
+            );
+            if (hasOrphaned) {
+              cleanedHooks = true;
+              return false;  // Remove this entry
+            }
+          }
+          return true;  // Keep this entry
+        });
+        settings.hooks[eventType] = filtered;
+      }
+    }
+  }
+
+  if (cleanedHooks) {
+    console.log(`  ${green}✓${reset} Removed orphaned hook registrations`);
+  }
+
+  // Fix #330: Update statusLine if it points to old statusline.js path
+  if (settings.statusLine && settings.statusLine.command &&
+      settings.statusLine.command.includes('statusline.js') &&
+      !settings.statusLine.command.includes('pan-statusline.js')) {
+    // Replace old path with new path
+    settings.statusLine.command = settings.statusLine.command.replace(
+      /statusline\.js/,
+      'pan-statusline.js'
+    );
+    console.log(`  ${green}✓${reset} Updated statusline path (statusline.js → pan-statusline.js)`);
+  }
+
+  return settings;
+}
+
+/**
+ * Uninstall PAN from the specified directory for a specific runtime
+ * Removes only PAN-specific files/directories, preserves user content
+ * @param {boolean} isGlobal - Whether to uninstall from global or local
+ * @param {string} runtime - Target runtime ('claude', 'opencode', 'gemini', 'codex')
+ */
+function uninstall(isGlobal, runtime = 'claude') {
+  const isOpencode = runtime === 'opencode';
+  const isCodex = runtime === 'codex';
+  const isCopilot = runtime === 'copilot';
+  const dirName = getDirName(runtime);
+
+  // Get the target directory based on runtime and install type
+  const targetDir = isGlobal
+    ? getGlobalDir(runtime, explicitConfigDir)
+    : path.join(process.cwd(), dirName);
+
+  const locationLabel = isGlobal
+    ? targetDir.replace(os.homedir(), '~')
+    : targetDir.replace(process.cwd(), '.');
+
+  let runtimeLabel = 'Claude Code';
+  if (runtime === 'opencode') runtimeLabel = 'OpenCode';
+  if (runtime === 'gemini') runtimeLabel = 'Gemini';
+  if (runtime === 'codex') runtimeLabel = 'Codex';
+  if (runtime === 'copilot') runtimeLabel = 'GitHub Copilot CLI';
+
+  // Guard: never uninstall from the PAN source repository itself
+  if (normPath(path.resolve(process.cwd())) === normPath(PAN_SOURCE_ROOT)) {
+    console.error(`\n  ${red}✗${reset} Refusing to uninstall from PAN's own source repository.`);
+    console.error(`  Run from your target project directory instead.\n`);
+    process.exit(1);
+  }
+
+  console.log(`  Uninstalling PAN from ${cyan}${runtimeLabel}${reset} at ${cyan}${locationLabel}${reset}\n`);
+
+  // Check if target directory exists
+  if (!fs.existsSync(targetDir)) {
+    console.log(`  ${yellow}⚠${reset} Directory does not exist: ${locationLabel}`);
+    console.log(`  Nothing to uninstall.\n`);
+    return;
+  }
+
+  let removedCount = 0;
+
+  // 1. Remove PAN commands/skills
+  if (isOpencode) {
+    // OpenCode: remove command/pan-*.md files
+    const commandDir = path.join(targetDir, 'command');
+    if (fs.existsSync(commandDir)) {
+      const files = fs.readdirSync(commandDir);
+      for (const file of files) {
+        if (file.startsWith('pan-') && file.endsWith('.md')) {
+          try { fs.unlinkSync(path.join(commandDir, file)); } catch {}
+          removedCount++;
+        }
+      }
+      console.log(`  ${green}✓${reset} Removed PAN commands from command/`);
+    }
+  } else if (isCodex || isCopilot) {
+    // Codex & Copilot CLI: remove skills/pan-*/SKILL.md skill directories
+    const skillsDir = path.join(targetDir, 'skills');
+    if (fs.existsSync(skillsDir)) {
+      let skillCount = 0;
+      const entries = fs.readdirSync(skillsDir, { withFileTypes: true });
+      for (const entry of entries) {
+        if (entry.isDirectory() && entry.name.startsWith('pan-')) {
+          try { fs.rmSync(path.join(skillsDir, entry.name), { recursive: true }); } catch {}
+          skillCount++;
+        }
+      }
+      if (skillCount > 0) {
+        removedCount++;
+        console.log(`  ${green}✓${reset} Removed ${skillCount} ${isCopilot ? 'Copilot CLI' : 'Codex'} skills`);
+      }
+    }
+  } else {
+    // Claude Code & Gemini: remove commands/pan/ directory
+    const panCommandsDir = path.join(targetDir, 'commands', 'pan');
+    if (fs.existsSync(panCommandsDir)) {
+      try { fs.rmSync(panCommandsDir, { recursive: true }); } catch {}
+      removedCount++;
+      console.log(`  ${green}✓${reset} Removed commands/pan/`);
+    }
+  }
+
+  // 2. Remove pan-wizard-core directory
+  const panDir = path.join(targetDir, 'pan-wizard-core');
+  if (fs.existsSync(panDir)) {
+    try { fs.rmSync(panDir, { recursive: true }); } catch {}
+    removedCount++;
+    console.log(`  ${green}✓${reset} Removed pan-wizard-core/`);
+  }
+
+  // 3. Remove PAN agents (pan-*.md files only)
+  const agentsDir = path.join(targetDir, 'agents');
+  if (fs.existsSync(agentsDir)) {
+    const files = fs.readdirSync(agentsDir);
+    let agentCount = 0;
+    for (const file of files) {
+      if (file.startsWith('pan-') && file.endsWith('.md')) {
+        try { fs.unlinkSync(path.join(agentsDir, file)); } catch {}
+        agentCount++;
+      }
+    }
+    if (agentCount > 0) {
+      removedCount++;
+      console.log(`  ${green}✓${reset} Removed ${agentCount} PAN agents`);
+    }
+  }
+
+  // 4. Remove PAN hooks
+  const hooksDir = path.join(targetDir, 'hooks');
+  if (fs.existsSync(hooksDir)) {
+    const panHooks = ['pan-statusline.js', 'pan-check-update.js', 'pan-check-update.sh', 'pan-context-monitor.js', 'pan-cost-logger.js'];
+    let hookCount = 0;
+    for (const hook of panHooks) {
+      const hookPath = path.join(hooksDir, hook);
+      if (fs.existsSync(hookPath)) {
+        try { fs.unlinkSync(hookPath); } catch {}
+        hookCount++;
+      }
+    }
+    if (hookCount > 0) {
+      removedCount++;
+      console.log(`  ${green}✓${reset} Removed ${hookCount} PAN hooks`);
+    }
+  }
+
+  // 5. Remove PAN package.json (CommonJS mode marker)
+  const pkgJsonPath = path.join(targetDir, 'package.json');
+  if (fs.existsSync(pkgJsonPath)) {
+    try {
+      const content = fs.readFileSync(pkgJsonPath, 'utf8').trim();
+      // Only remove if it's our minimal CommonJS marker (handle formatting variations)
+      const normalized = content.replace(/\s+/g, '');
+      if (normalized === '{"type":"commonjs"}') {
+        fs.unlinkSync(pkgJsonPath);
+        removedCount++;
+        console.log(`  ${green}✓${reset} Removed PAN package.json`);
+      }
+    } catch (e) {
+      // Ignore read errors
+    }
+  }
+
+  // 6a. Clean up Copilot CLI config.json
+  if (isCopilot) {
+    const configPath = path.join(targetDir, 'config.json');
+    if (fs.existsSync(configPath)) {
+      try {
+        const config = JSON.parse(fs.readFileSync(configPath, 'utf8'));
+        let configModified = false;
+
+        // Remove PAN statusline
+        if (config.statusLine && config.statusLine.command &&
+            config.statusLine.command.includes('pan-statusline')) {
+          delete config.statusLine;
+          configModified = true;
+          console.log(`  ${green}✓${reset} Removed PAN statusline from config`);
+        }
+
+        // Remove PAN hooks from sessionStart
+        if (config.hooks && config.hooks.sessionStart) {
+          const before = config.hooks.sessionStart.length;
+          config.hooks.sessionStart = config.hooks.sessionStart.filter(h =>
+            !(h.command && h.command.includes('pan-check-update'))
+          );
+          if (config.hooks.sessionStart.length < before) {
+            configModified = true;
+            console.log(`  ${green}✓${reset} Removed PAN hooks from config`);
+          }
+          if (config.hooks.sessionStart.length === 0) {
+            delete config.hooks.sessionStart;
+          }
+        }
+
+        // Remove PAN hooks from postToolUse
+        if (config.hooks && config.hooks.postToolUse) {
+          const before = config.hooks.postToolUse.length;
+          config.hooks.postToolUse = config.hooks.postToolUse.filter(h =>
+            !(h.command && h.command.includes('pan-context-monitor'))
+          );
+          if (config.hooks.postToolUse.length < before) {
+            configModified = true;
+            console.log(`  ${green}✓${reset} Removed context monitor from config`);
+          }
+          if (config.hooks.postToolUse.length === 0) {
+            delete config.hooks.postToolUse;
+          }
+        }
+
+        if (config.hooks && Object.keys(config.hooks).length === 0) {
+          delete config.hooks;
+        }
+
+        if (configModified) {
+          if (Object.keys(config).length === 0) {
+            fs.unlinkSync(configPath);
+            console.log(`  ${green}✓${reset} Removed empty config.json`);
+          } else {
+            fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + '\n');
+          }
+          removedCount++;
+        }
+      } catch (e) {
+        // Ignore JSON parse errors
+      }
+    }
+  }
+
+  // 6b. Clean up settings.json (remove PAN hooks and statusline)
+  const settingsPath = path.join(targetDir, 'settings.json');
+  if (fs.existsSync(settingsPath)) {
+    let settings = readSettings(settingsPath);
+    let settingsModified = false;
+
+    // Remove PAN statusline if it references our hook
+    if (settings.statusLine && settings.statusLine.command &&
+        settings.statusLine.command.includes('pan-statusline')) {
+      delete settings.statusLine;
+      settingsModified = true;
+      console.log(`  ${green}✓${reset} Removed PAN statusline from settings`);
+    }
+
+    // Remove PAN hooks from SessionStart
+    if (settings.hooks && settings.hooks.SessionStart) {
+      const before = settings.hooks.SessionStart.length;
+      settings.hooks.SessionStart = settings.hooks.SessionStart.filter(entry => {
+        if (entry.hooks && Array.isArray(entry.hooks)) {
+          // Filter out PAN hooks
+          const hasPanHook = entry.hooks.some(h =>
+            h.command && (h.command.includes('pan-check-update') || h.command.includes('pan-statusline'))
+          );
+          return !hasPanHook;
+        }
+        return true;
+      });
+      if (settings.hooks.SessionStart.length < before) {
+        settingsModified = true;
+        console.log(`  ${green}✓${reset} Removed PAN hooks from settings`);
+      }
+      // Clean up empty array
+      if (settings.hooks.SessionStart.length === 0) {
+        delete settings.hooks.SessionStart;
+      }
+    }
+
+    // Remove PAN hooks from PostToolUse
+    if (settings.hooks && settings.hooks.PostToolUse) {
+      const before = settings.hooks.PostToolUse.length;
+      settings.hooks.PostToolUse = settings.hooks.PostToolUse.filter(entry => {
+        if (entry.hooks && Array.isArray(entry.hooks)) {
+          const hasPanHook = entry.hooks.some(h =>
+            h.command && h.command.includes('pan-context-monitor')
+          );
+          return !hasPanHook;
+        }
+        return true;
+      });
+      if (settings.hooks.PostToolUse.length < before) {
+        settingsModified = true;
+        console.log(`  ${green}✓${reset} Removed context monitor hook from settings`);
+      }
+      if (settings.hooks.PostToolUse.length === 0) {
+        delete settings.hooks.PostToolUse;
+      }
+    }
+
+    // Clean up empty hooks object
+    if (settings.hooks && Object.keys(settings.hooks).length === 0) {
+      delete settings.hooks;
+    }
+
+    // Remove Gemini experimental.enableAgents if PAN set it
+    if (settings.experimental && settings.experimental.enableAgents === true) {
+      delete settings.experimental.enableAgents;
+      if (Object.keys(settings.experimental).length === 0) {
+        delete settings.experimental;
+      }
+      settingsModified = true;
+      console.log(`  ${green}✓${reset} Removed experimental agents flag from settings`);
+    }
+
+    if (settingsModified) {
+      // If settings is now empty (only PAN entries existed), remove the file
+      if (Object.keys(settings).length === 0) {
+        fs.unlinkSync(settingsPath);
+        console.log(`  ${green}✓${reset} Removed empty settings.json`);
+      } else {
+        writeSettings(settingsPath, settings);
+      }
+      removedCount++;
+    }
+  }
+
+  // 6. For OpenCode, clean up permissions from opencode.json
+  if (isOpencode) {
+    // For local uninstalls, clean up ./.opencode/opencode.json
+    // For global uninstalls, clean up ~/.config/opencode/opencode.json
+    const opencodeConfigDir = isGlobal
+      ? getOpencodeGlobalDir()
+      : path.join(process.cwd(), '.opencode');
+    const configPath = path.join(opencodeConfigDir, 'opencode.json');
+    if (fs.existsSync(configPath)) {
+      try {
+        const config = JSON.parse(fs.readFileSync(configPath, 'utf8'));
+        let modified = false;
+
+        // Remove PAN permission entries
+        if (config.permission) {
+          for (const permType of ['read', 'external_directory']) {
+            if (config.permission[permType]) {
+              const keys = Object.keys(config.permission[permType]);
+              for (const key of keys) {
+                if (key.includes('pan-wizard-core')) {
+                  delete config.permission[permType][key];
+                  modified = true;
+                }
+              }
+              // Clean up empty objects
+              if (Object.keys(config.permission[permType]).length === 0) {
+                delete config.permission[permType];
+              }
+            }
+          }
+          if (Object.keys(config.permission).length === 0) {
+            delete config.permission;
+          }
+        }
+
+        if (modified) {
+          fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + '\n');
+          removedCount++;
+          console.log(`  ${green}✓${reset} Removed PAN permissions from opencode.json`);
+        }
+      } catch (e) {
+        // Ignore JSON parse errors
+      }
+    }
+  }
+
+  // 7. Remove pan-file-manifest.json
+  const manifestPath = path.join(targetDir, MANIFEST_NAME);
+  if (fs.existsSync(manifestPath)) {
+    try { fs.unlinkSync(manifestPath); } catch {}
+    removedCount++;
+    console.log(`  ${green}✓${reset} Removed ${MANIFEST_NAME}`);
+  }
+
+  // 8. Clean up empty PAN directories
+  const dirsToClean = [
+    path.join(targetDir, 'agents'),
+    path.join(targetDir, 'hooks'),
+    path.join(targetDir, 'skills'),
+    path.join(targetDir, 'commands', 'pan'),
+    path.join(targetDir, 'commands'),
+  ];
+  for (const dir of dirsToClean) {
+    try {
+      if (fs.existsSync(dir)) {
+        const remaining = fs.readdirSync(dir);
+        if (remaining.length === 0) {
+          fs.rmdirSync(dir);
+        }
+      }
+    } catch {}
+  }
+
+  if (removedCount === 0) {
+    console.log(`  ${yellow}⚠${reset} No PAN files found to remove.`);
+  }
+
+  console.log(`
+  ${green}Done!${reset} PAN has been uninstalled from ${runtimeLabel}.
+  Your other files and settings have been preserved.
+`);
+}
+
+
+/**
+ * Configure OpenCode permissions to allow reading PAN reference docs
+ * This prevents permission prompts when PAN accesses the pan-wizard-core directory
+ * @param {boolean} isGlobal - Whether this is a global or local install
+ */
+function configureOpencodePermissions(isGlobal = true) {
+  // For local installs, use ./.opencode/opencode.json
+  // For global installs, use ~/.config/opencode/opencode.json
+  const opencodeConfigDir = isGlobal
+    ? getOpencodeGlobalDir()
+    : path.join(process.cwd(), '.opencode');
+  const configPath = path.join(opencodeConfigDir, 'opencode.json');
+
+  // Ensure config directory exists
+  fs.mkdirSync(opencodeConfigDir, { recursive: true });
+
+  // Read existing config or create empty object
+  let config = {};
+  if (fs.existsSync(configPath)) {
+    try {
+      const content = fs.readFileSync(configPath, 'utf8');
+      config = parseJsonc(content);
+    } catch (e) {
+      // Cannot parse - DO NOT overwrite user's config
+      console.log(`  ${yellow}⚠${reset} Could not parse opencode.json - skipping permission config`);
+      console.log(`    ${dim}Reason: ${e.message}${reset}`);
+      console.log(`    ${dim}Your config was NOT modified. Fix the syntax manually if needed.${reset}`);
+      return;
+    }
+  }
+
+  // Ensure permission structure exists
+  if (!config.permission) {
+    config.permission = {};
+  }
+
+  // Build the PAN path using the actual config directory
+  // Use ~ shorthand if it's in the default location, otherwise use full path
+  const defaultConfigDir = path.join(os.homedir(), '.config', 'opencode');
+  const panPath = opencodeConfigDir === defaultConfigDir
+    ? '~/.config/opencode/pan-wizard/*'
+    : `${opencodeConfigDir.replace(/\\/g, '/')}/pan-wizard-core/*`;
+  
+  let modified = false;
+
+  // Configure read permission
+  if (!config.permission.read || typeof config.permission.read !== 'object') {
+    config.permission.read = {};
+  }
+  if (config.permission.read[panPath] !== 'allow') {
+    config.permission.read[panPath] = 'allow';
+    modified = true;
+  }
+
+  // Configure external_directory permission (the safety guard for paths outside project)
+  if (!config.permission.external_directory || typeof config.permission.external_directory !== 'object') {
+    config.permission.external_directory = {};
+  }
+  if (config.permission.external_directory[panPath] !== 'allow') {
+    config.permission.external_directory[panPath] = 'allow';
+    modified = true;
+  }
+
+  if (!modified) {
+    return; // Already configured
+  }
+
+  // Write config back
+  try {
+    fs.writeFileSync(configPath, JSON.stringify(config, null, 2) + '\n');
+    console.log(`  ${green}✓${reset} Configured read permission for PAN docs`);
+  } catch (e) {
+    console.error(`  ${yellow}⚠${reset} Failed to write config: ${e.message}`);
+  }
+}
+
+/**
+ * Verify a directory exists and contains files
+ */
+function verifyInstalled(dirPath, description) {
+  if (!fs.existsSync(dirPath)) {
+    console.error(`  ${yellow}✗${reset} Failed to install ${description}: directory not created`);
+    return false;
+  }
+  try {
+    const entries = fs.readdirSync(dirPath);
+    if (entries.length === 0) {
+      console.error(`  ${yellow}✗${reset} Failed to install ${description}: directory is empty`);
+      return false;
+    }
+  } catch (e) {
+    console.error(`  ${yellow}✗${reset} Failed to install ${description}: ${e.message}`);
+    return false;
+  }
+  return true;
+}
+
+/**
+ * Verify a file exists
+ */
+function verifyFileInstalled(filePath, description) {
+  if (!fs.existsSync(filePath)) {
+    console.error(`  ${yellow}✗${reset} Failed to install ${description}: file not created`);
+    return false;
+  }
+  return true;
+}
+
+/**
+ * Install to the specified directory for a specific runtime
+ * @param {boolean} isGlobal - Whether to install globally or locally
+ * @param {string} runtime - Target runtime ('claude', 'opencode', 'gemini', 'codex')
+ */
+
+// ──────────────────────────────────────────────────────
+// Local Patch Persistence
+// ──────────────────────────────────────────────────────
+
+const PATCHES_DIR_NAME = 'pan-local-patches';
+const MANIFEST_NAME = 'pan-file-manifest.json';
+
+/**
+ * Compute SHA256 hash of file contents
+ */
+function fileHash(filePath) {
+  try {
+    const content = fs.readFileSync(filePath);
+    return crypto.createHash('sha256').update(content).digest('hex');
+  } catch (e) {
+    return null;
+  }
+}
+
+/**
+ * Recursively collect all files in dir with their hashes
+ */
+function generateManifest(dir, baseDir) {
+  if (!baseDir) baseDir = dir;
+  const manifest = {};
+  if (!fs.existsSync(dir)) return manifest;
+  const entries = fs.readdirSync(dir, { withFileTypes: true });
+  for (const entry of entries) {
+    const fullPath = path.join(dir, entry.name);
+    const relPath = path.relative(baseDir, fullPath).replace(/\\/g, '/');
+    if (entry.isDirectory()) {
+      Object.assign(manifest, generateManifest(fullPath, baseDir));
+    } else {
+      manifest[relPath] = fileHash(fullPath);
+    }
+  }
+  return manifest;
+}
+
+/**
+ * Write file manifest after installation for future modification detection
+ */
+function writeManifest(configDir, runtime = 'claude') {
+  const isOpencode = runtime === 'opencode';
+  const isCodex = runtime === 'codex';
+  const isCopilot = runtime === 'copilot';
+  const panDir = path.join(configDir, 'pan-wizard-core');
+  const commandsDir = path.join(configDir, 'commands', 'pan');
+  const opencodeCommandDir = path.join(configDir, 'command');
+  const codexSkillsDir = path.join(configDir, 'skills');
+  const agentsDir = path.join(configDir, 'agents');
+  const manifest = { version: pkg.version, timestamp: new Date().toISOString(), files: {} };
+
+  const panHashes = generateManifest(panDir);
+  for (const [rel, hash] of Object.entries(panHashes)) {
+    manifest.files['pan-wizard-core/' + rel] = hash;
+  }
+  if (!isOpencode && !isCodex && fs.existsSync(commandsDir)) {
+    const cmdHashes = generateManifest(commandsDir);
+    for (const [rel, hash] of Object.entries(cmdHashes)) {
+      manifest.files['commands/pan/' + rel] = hash;
+    }
+  }
+  if (isOpencode && fs.existsSync(opencodeCommandDir)) {
+    for (const file of fs.readdirSync(opencodeCommandDir)) {
+      if (file.startsWith('pan-') && file.endsWith('.md')) {
+        manifest.files['command/' + file] = fileHash(path.join(opencodeCommandDir, file));
+      }
+    }
+  }
+  if ((isCodex || isCopilot) && fs.existsSync(codexSkillsDir)) {
+    for (const skillName of listCodexSkillNames(codexSkillsDir)) {
+      const skillRoot = path.join(codexSkillsDir, skillName);
+      const skillHashes = generateManifest(skillRoot);
+      for (const [rel, hash] of Object.entries(skillHashes)) {
+        manifest.files[`skills/${skillName}/${rel}`] = hash;
+      }
+    }
+  }
+  if (fs.existsSync(agentsDir)) {
+    for (const file of fs.readdirSync(agentsDir)) {
+      if (file.startsWith('pan-') && file.endsWith('.md')) {
+        manifest.files['agents/' + file] = fileHash(path.join(agentsDir, file));
+      }
+    }
+  }
+  // Track hook scripts in manifest for modification detection during upgrades
+  const hooksDir = path.join(configDir, 'hooks');
+  if (fs.existsSync(hooksDir)) {
+    for (const file of fs.readdirSync(hooksDir)) {
+      if (file.startsWith('pan-') && file.endsWith('.js')) {
+        manifest.files['hooks/' + file] = fileHash(path.join(hooksDir, file));
+      }
+    }
+  }
+
+  try {
+    fs.writeFileSync(path.join(configDir, MANIFEST_NAME), JSON.stringify(manifest, null, 2));
+  } catch (e) {
+    console.error(`  ${yellow}⚠${reset} Failed to write manifest: ${e.message}`);
+  }
+  return manifest;
+}
+
+/**
+ * Detect user-modified PAN files by comparing against install manifest.
+ * Backs up modified files to pan-local-patches/ for reapply after update.
+ */
+function saveLocalPatches(configDir) {
+  const manifestPath = path.join(configDir, MANIFEST_NAME);
+  if (!fs.existsSync(manifestPath)) return [];
+
+  let manifest;
+  try { manifest = JSON.parse(fs.readFileSync(manifestPath, 'utf8')); } catch { return []; }
+
+  const patchesDir = path.join(configDir, PATCHES_DIR_NAME);
+  const modified = [];
+
+  for (const [relPath, originalHash] of Object.entries(manifest.files || {})) {
+    const fullPath = path.join(configDir, relPath);
+    if (!fs.existsSync(fullPath)) continue;
+    const currentHash = fileHash(fullPath);
+    if (currentHash !== originalHash) {
+      const backupPath = path.join(patchesDir, relPath);
+      fs.mkdirSync(path.dirname(backupPath), { recursive: true });
+      fs.copyFileSync(fullPath, backupPath);
+      modified.push(relPath);
+    }
+  }
+
+  if (modified.length > 0) {
+    const meta = {
+      backed_up_at: new Date().toISOString(),
+      from_version: manifest.version,
+      files: modified
+    };
+    fs.writeFileSync(path.join(patchesDir, 'backup-meta.json'), JSON.stringify(meta, null, 2));
+    console.log('  ' + yellow + 'i' + reset + '  Found ' + modified.length + ' locally modified PAN file(s) — backed up to ' + PATCHES_DIR_NAME + '/');
+    for (const f of modified) {
+      console.log('     ' + dim + f + reset);
+    }
+  }
+  return modified;
+}
+
+/**
+ * After install, report backed-up patches for user to reapply.
+ */
+function reportLocalPatches(configDir, runtime = 'claude') {
+  const patchesDir = path.join(configDir, PATCHES_DIR_NAME);
+  const metaPath = path.join(patchesDir, 'backup-meta.json');
+  if (!fs.existsSync(metaPath)) return [];
+
+  let meta;
+  try { meta = JSON.parse(fs.readFileSync(metaPath, 'utf8')); } catch { return []; }
+
+  if (meta.files && meta.files.length > 0) {
+    const reapplyCommand = runtime === 'opencode'
+      ? '/pan-patches'
+      : runtime === 'codex'
+        ? '$pan-patches'
+        : '/pan:patches';
+    console.log('');
+    console.log('  ' + yellow + 'Local patches detected' + reset + ' (from v' + meta.from_version + '):');
+    for (const f of meta.files) {
+      console.log('     ' + cyan + f + reset);
+    }
+    console.log('');
+    console.log('  Your modifications are saved in ' + cyan + PATCHES_DIR_NAME + '/' + reset);
+    console.log('  Run ' + cyan + reapplyCommand + reset + ' to merge them into the new version.');
+    console.log('  Or manually compare and merge the files.');
+    console.log('');
+  }
+  return meta.files || [];
+}
+
+function install(isGlobal, runtime = 'claude') {
+  const isOpencode = runtime === 'opencode';
+  const isGemini = runtime === 'gemini';
+  const isCodex = runtime === 'codex';
+  const isCopilot = runtime === 'copilot';
+  const dirName = getDirName(runtime);
+  const src = path.join(__dirname, '..');
+
+  // Get the target directory based on runtime and install type
+  const targetDir = isGlobal
+    ? getGlobalDir(runtime, explicitConfigDir)
+    : path.join(process.cwd(), dirName);
+
+  const locationLabel = isGlobal
+    ? targetDir.replace(os.homedir(), '~')
+    : targetDir.replace(process.cwd(), '.');
+
+  // Path prefix for file references in markdown content
+  // For global installs: use full path
+  // For local installs: use relative
+  const pathPrefix = isGlobal
+    ? `${targetDir.replace(/\\/g, '/')}/`
+    : `./${dirName}/`;
+
+  let runtimeLabel = 'Claude Code';
+  if (isOpencode) runtimeLabel = 'OpenCode';
+  if (isGemini) runtimeLabel = 'Gemini';
+  if (isCodex) runtimeLabel = 'Codex';
+  if (isCopilot) runtimeLabel = 'GitHub Copilot CLI';
+
+  // Guard: never install into the PAN source repository itself
+  if (normPath(path.resolve(process.cwd())) === normPath(PAN_SOURCE_ROOT)) {
+    console.error(`\n  ${red}✗${reset} Refusing to install PAN into its own source repository.`);
+    console.error(`  Run the installer from your target project directory instead.\n`);
+    console.error(`  Example: cd /path/to/my-project && node ${path.resolve(__dirname, 'install.js')} --claude --local\n`);
+    process.exit(1);
+  }
+
+  console.log(`  Installing for ${cyan}${runtimeLabel}${reset} to ${cyan}${locationLabel}${reset}\n`);
+
+  // Early writability check — fail fast before any file operations
+  try {
+    fs.mkdirSync(targetDir, { recursive: true });
+    const probe = path.join(targetDir, '.pan-write-test');
+    fs.writeFileSync(probe, '');
+    fs.unlinkSync(probe);
+  } catch (e) {
+    console.error(`  ${red}✗${reset} Cannot write to ${locationLabel}: ${e.message}`);
+    console.error(`  Check directory permissions and try again.`);
+    process.exit(1);
+  }
+
+  // Track installation failures
+  const failures = [];
+
+  // Save any locally modified PAN files before they get wiped
+  saveLocalPatches(targetDir);
+
+  // Clean up orphaned files from previous versions
+  cleanupOrphanedFiles(targetDir);
+
+  // OpenCode uses command/ (flat), Codex uses skills/, Claude/Gemini use commands/pan/
+  try {
+    if (isOpencode) {
+      // OpenCode: flat structure in command/ directory
+      const commandDir = path.join(targetDir, 'command');
+      fs.mkdirSync(commandDir, { recursive: true });
+
+      // Copy commands/pan/*.md as command/pan-*.md (flatten structure)
+      const panSrc = path.join(src, 'commands', 'pan');
+      copyFlattenedCommands(panSrc, commandDir, 'pan', pathPrefix, runtime);
+      if (verifyInstalled(commandDir, 'command/pan-*')) {
+        const count = fs.readdirSync(commandDir).filter(f => f.startsWith('pan-')).length;
+        console.log(`  ${green}✓${reset} Installed ${count} commands to command/`);
+      } else {
+        failures.push('command/pan-*');
+      }
+    } else if (isCodex) {
+      const skillsDir = path.join(targetDir, 'skills');
+      const panSrc = path.join(src, 'commands', 'pan');
+      copyCommandsAsCodexSkills(panSrc, skillsDir, 'pan', pathPrefix, runtime);
+      const installedSkillNames = listCodexSkillNames(skillsDir);
+      if (installedSkillNames.length > 0) {
+        console.log(`  ${green}✓${reset} Installed ${installedSkillNames.length} skills to skills/`);
+      } else {
+        failures.push('skills/pan-*');
+      }
+    } else if (isCopilot) {
+      const skillsDir = path.join(targetDir, 'skills');
+      const panSrc = path.join(src, 'commands', 'pan');
+      copyCommandsAsCopilotSkills(panSrc, skillsDir, 'pan', pathPrefix, runtime);
+      const installedSkills = fs.readdirSync(skillsDir, { withFileTypes: true })
+        .filter(e => e.isDirectory() && e.name.startsWith('pan-'));
+      if (installedSkills.length > 0) {
+        console.log(`  ${green}✓${reset} Installed ${installedSkills.length} skills to skills/`);
+      } else {
+        failures.push('skills/pan-*');
+      }
+    } else {
+      // Claude Code & Gemini: nested structure in commands/ directory
+      const commandsDir = path.join(targetDir, 'commands');
+      fs.mkdirSync(commandsDir, { recursive: true });
+
+      const panSrc = path.join(src, 'commands', 'pan');
+      const panDest = path.join(commandsDir, 'pan');
+      copyWithPathReplacement(panSrc, panDest, pathPrefix, runtime, true);
+      if (verifyInstalled(panDest, 'commands/pan')) {
+        console.log(`  ${green}✓${reset} Installed commands/pan`);
+      } else {
+        failures.push('commands/pan');
+      }
+
+      // E-5: Claude native skill shims — register each PAN command as a skill
+      // so Claude Code's native skill discovery surfaces them. Gemini doesn't
+      // use the skills/ directory, so only generate for Claude.
+      if (runtime === 'claude') {
+        try {
+          const skillsDir = path.join(targetDir, 'skills');
+          fs.mkdirSync(skillsDir, { recursive: true });
+          let shimCount = 0;
+          for (const file of fs.readdirSync(panDest)) {
+            if (!file.endsWith('.md')) continue;
+            const commandName = file.slice(0, -3);
+            const commandBody = fs.readFileSync(path.join(panDest, file), 'utf-8');
+            const description = lib.extractFrontmatterField(commandBody, 'description')
+              || `PAN command: ${commandName}`;
+            const shim = buildClaudeSkillShim({ commandName, description });
+            fs.writeFileSync(path.join(skillsDir, `pan-${commandName}.md`), shim, 'utf-8');
+            shimCount += 1;
+          }
+          if (shimCount > 0) {
+            console.log(`  ${green}✓${reset} Registered ${shimCount} commands as skills/pan-*.md`);
+          }
+        } catch (e) {
+          console.error(`  ${yellow}⚠${reset} Skill shim registration skipped: ${e.message}`);
+        }
+      }
+    }
+  } catch (e) {
+    console.error(`  ${yellow}✗${reset} Commands install failed: ${e.message}`);
+    failures.push('commands');
+  }
+
+  // Copy pan-wizard-core skill with path replacement
+  try {
+    const skillSrc = path.join(src, 'pan-wizard-core');
+    const skillDest = path.join(targetDir, 'pan-wizard-core');
+    copyWithPathReplacement(skillSrc, skillDest, pathPrefix, runtime);
+    if (verifyInstalled(skillDest, 'pan-wizard-core')) {
+      console.log(`  ${green}✓${reset} Installed pan-wizard-core`);
+    } else {
+      failures.push('pan-wizard-core');
+    }
+  } catch (e) {
+    console.error(`  ${yellow}✗${reset} pan-wizard-core install failed: ${e.message}`);
+    failures.push('pan-wizard-core');
+  }
+
+  // Copy agents to agents directory
+  try {
+    const agentsSrc = path.join(src, 'agents');
+    if (fs.existsSync(agentsSrc)) {
+      const agentsDest = path.join(targetDir, 'agents');
+      fs.mkdirSync(agentsDest, { recursive: true });
+
+      // Remove old PAN agents (pan-*.md and pan-*.agent.md) before copying new ones
+      if (fs.existsSync(agentsDest)) {
+        for (const file of fs.readdirSync(agentsDest)) {
+          if (file.startsWith('pan-') && file.endsWith('.md')) {
+            fs.unlinkSync(path.join(agentsDest, file));
+          }
+        }
+      }
+
+      // Copy new agents
+      const agentEntries = fs.readdirSync(agentsSrc, { withFileTypes: true });
+      for (const entry of agentEntries) {
+        if (entry.isFile() && entry.name.endsWith('.md')) {
+          let content = fs.readFileSync(path.join(agentsSrc, entry.name), 'utf8');
+          // Always replace ~/.claude/ as it is the source of truth in the repo
+          const dirRegex = /~\/\.claude\//g;
+          content = content.replace(dirRegex, pathPrefix);
+          content = processAttribution(content, getCommitAttribution(runtime));
+          // E-3 (per-runtime): strip unsupported thinking frontmatter and inject
+          // prose preamble for runtimes without native extended thinking.
+          content = stripThinkingFrontmatter(content, runtime);
+          // Convert frontmatter for runtime compatibility
+          if (isOpencode) {
+            content = convertClaudeToOpencodeFrontmatter(content);
+          } else if (isGemini) {
+            content = convertClaudeToGeminiAgent(content);
+          } else if (isCodex) {
+            content = convertClaudeToCodexMarkdown(content);
+          } else if (isCopilot) {
+            content = convertClaudeToCopilotAgent(content);
+          }
+          // Copilot CLI uses .agent.md extension; others use .md
+          const destName = isCopilot
+            ? entry.name.replace(/\.md$/, '.agent.md')
+            : entry.name;
+          fs.writeFileSync(path.join(agentsDest, destName), content);
+        }
+      }
+      if (verifyInstalled(agentsDest, 'agents')) {
+        console.log(`  ${green}✓${reset} Installed agents`);
+      } else {
+        failures.push('agents');
+      }
+    }
+  } catch (e) {
+    console.error(`  ${yellow}✗${reset} Agents install failed: ${e.message}`);
+    failures.push('agents');
+  }
+
+  // Copy CHANGELOG.md
+  try {
+    const changelogSrc = path.join(src, 'CHANGELOG.md');
+    const changelogDest = path.join(targetDir, 'pan-wizard-core', 'CHANGELOG.md');
+    if (fs.existsSync(changelogSrc)) {
+      fs.copyFileSync(changelogSrc, changelogDest);
+      if (verifyFileInstalled(changelogDest, 'CHANGELOG.md')) {
+        console.log(`  ${green}✓${reset} Installed CHANGELOG.md`);
+      } else {
+        failures.push('CHANGELOG.md');
+      }
+    }
+  } catch (e) {
+    console.error(`  ${yellow}✗${reset} CHANGELOG install failed: ${e.message}`);
+    failures.push('CHANGELOG.md');
+  }
+
+  // Write VERSION file (with upgrade/same/downgrade detection)
+  try {
+    const versionDest = path.join(targetDir, 'pan-wizard-core', 'VERSION');
+    let versionMsg = `${pkg.version}`;
+    try {
+      const prev = fs.readFileSync(versionDest, 'utf8').trim();
+      if (prev && prev !== pkg.version) {
+        versionMsg = `${prev} → ${pkg.version}`;
+      } else if (prev === pkg.version) {
+        versionMsg = `${pkg.version} (reinstall)`;
+      }
+    } catch (_) { /* first install */ }
+    fs.writeFileSync(versionDest, pkg.version + '\n');
+    if (verifyFileInstalled(versionDest, 'VERSION')) {
+      console.log(`  ${green}✓${reset} Wrote VERSION (${versionMsg})`);
+    } else {
+      failures.push('VERSION');
+    }
+  } catch (e) {
+    console.error(`  ${yellow}✗${reset} VERSION write failed: ${e.message}`);
+    failures.push('VERSION');
+  }
+
+  if (!isCodex) {
+    // Write package.json to force CommonJS mode for PAN scripts
+    // Prevents "require is not defined" errors when project has "type": "module"
+    // Node.js walks up looking for package.json - this stops inheritance from project
+    try {
+      const pkgJsonDest = path.join(targetDir, 'package.json');
+      fs.writeFileSync(pkgJsonDest, '{"type":"commonjs"}\n');
+      console.log(`  ${green}✓${reset} Wrote package.json (CommonJS mode)`);
+    } catch (e) {
+      console.error(`  ${yellow}✗${reset} package.json write failed: ${e.message}`);
+      failures.push('package.json');
+    }
+  }
+
+  if (!isCodex && !isOpencode) {
+    // Copy hooks from dist/ (bundled with dependencies)
+    // Hooks are only supported by Claude Code, Gemini, and Copilot CLI
+    // Template paths for the target runtime (replaces '.claude' with correct config dir)
+    try {
+      const hooksSrc = path.join(src, 'hooks', 'dist');
+      if (fs.existsSync(hooksSrc)) {
+        const hooksDest = path.join(targetDir, 'hooks');
+        fs.mkdirSync(hooksDest, { recursive: true });
+        const hookEntries = fs.readdirSync(hooksSrc);
+        const configDirReplacement = getConfigDirFromHome(runtime, isGlobal);
+        for (const entry of hookEntries) {
+          const srcFile = path.join(hooksSrc, entry);
+          if (fs.statSync(srcFile).isFile()) {
+            const destFile = path.join(hooksDest, entry);
+            // Template .js files to replace '.claude' with runtime-specific config dir
+            if (entry.endsWith('.js')) {
+              let content = fs.readFileSync(srcFile, 'utf8');
+              content = content.replace(/'\.claude'/g, configDirReplacement);
+              fs.writeFileSync(destFile, content);
+            } else {
+              fs.copyFileSync(srcFile, destFile);
+            }
+          }
+        }
+        if (verifyInstalled(hooksDest, 'hooks')) {
+          console.log(`  ${green}✓${reset} Installed hooks (bundled)`);
+        } else {
+          failures.push('hooks');
+        }
+      }
+    } catch (e) {
+      console.error(`  ${yellow}✗${reset} Hooks install failed: ${e.message}`);
+      failures.push('hooks');
+    }
+  }
+
+  if (failures.length > 0) {
+    console.error(`\n  ${yellow}Installation incomplete!${reset} Failed: ${failures.join(', ')}`);
+    process.exit(1);
+  }
+
+  // Write file manifest for future modification detection
+  writeManifest(targetDir, runtime);
+  console.log(`  ${green}✓${reset} Wrote file manifest (${MANIFEST_NAME})`);
+
+  // Report any backed-up local patches
+  reportLocalPatches(targetDir, runtime);
+
+  // Post-install self-check: verify critical files exist before declaring success
+  const selfCheckIssues = [];
+  const panToolsPath = path.join(targetDir, 'pan-wizard-core', 'bin', 'pan-tools.cjs');
+  if (!fs.existsSync(panToolsPath)) selfCheckIssues.push('pan-tools.cjs missing');
+  const manifestFullPath = path.join(targetDir, MANIFEST_NAME);
+  if (fs.existsSync(manifestFullPath)) {
+    try {
+      const mfst = JSON.parse(fs.readFileSync(manifestFullPath, 'utf8'));
+      const fileCount = Object.keys(mfst.files || {}).length;
+      if (fileCount < 50) selfCheckIssues.push(`manifest has only ${fileCount} files (expected 150+)`);
+    } catch { selfCheckIssues.push('manifest unreadable'); }
+  } else {
+    selfCheckIssues.push('manifest missing');
+  }
+  if (selfCheckIssues.length > 0) {
+    console.error(`\n  ${yellow}⚠ Post-install check found issues:${reset}`);
+    for (const issue of selfCheckIssues) console.error(`    - ${issue}`);
+    console.error(`  Run ${cyan}pan-tools validate deployment${reset} for full diagnostics.\n`);
+  }
+
+  if (isCodex) {
+    return { settingsPath: null, settings: null, statuslineCommand: null, runtime };
+  }
+
+  const updateCheckCommand = isGlobal
+    ? buildHookCommand(targetDir, 'pan-check-update.js')
+    : 'node ' + dirName + '/hooks/pan-check-update.js';
+  const contextMonitorCommand = isGlobal
+    ? buildHookCommand(targetDir, 'pan-context-monitor.js')
+    : 'node ' + dirName + '/hooks/pan-context-monitor.js';
+  const statuslineCommand = isGlobal
+    ? buildHookCommand(targetDir, 'pan-statusline.js')
+    : 'node ' + dirName + '/hooks/pan-statusline.js';
+  const costLoggerCommand = isGlobal
+    ? buildHookCommand(targetDir, 'pan-cost-logger.js')
+    : 'node ' + dirName + '/hooks/pan-cost-logger.js';
+
+  // Copilot CLI uses config.json with its own hook format
+  if (isCopilot) {
+    const configPath = path.join(targetDir, 'config.json');
+    const config = readSettings(configPath);
+
+    if (!config.hooks) {
+      config.hooks = {};
+    }
+
+    // Register sessionStart hook for update checking
+    if (!config.hooks.sessionStart) {
+      config.hooks.sessionStart = [];
+    }
+    const hasPanUpdateHook = config.hooks.sessionStart.some(h =>
+      h.command && h.command.includes('pan-check-update')
+    );
+    if (!hasPanUpdateHook) {
+      config.hooks.sessionStart.push({
+        command: updateCheckCommand
+      });
+      console.log(`  ${green}✓${reset} Configured update check hook`);
+    }
+
+    // Register postToolUse hook for context monitoring
+    if (!config.hooks.postToolUse) {
+      config.hooks.postToolUse = [];
+    }
+    const hasContextHook = config.hooks.postToolUse.some(h =>
+      h.command && h.command.includes('pan-context-monitor')
+    );
+    if (!hasContextHook) {
+      config.hooks.postToolUse.push({
+        command: contextMonitorCommand
+      });
+      console.log(`  ${green}✓${reset} Configured context window monitor hook`);
+    }
+
+    writeSettings(configPath, config);
+    return { settingsPath: configPath, settings: config, statuslineCommand, runtime };
+  }
+
+  // Configure statusline and hooks in settings.json
+  // Claude Code, Gemini, OpenCode use settings.json
+  const settingsPath = path.join(targetDir, 'settings.json');
+  const settings = cleanupOrphanedHooks(readSettings(settingsPath));
+
+  // Enable experimental agents for Gemini CLI (required for custom sub-agents)
+  if (isGemini) {
+    if (!settings.experimental) {
+      settings.experimental = {};
+    }
+    if (!settings.experimental.enableAgents) {
+      settings.experimental.enableAgents = true;
+      console.log(`  ${green}✓${reset} Enabled experimental agents`);
+    }
+  }
+
+  // Configure SessionStart hook for update checking (skip for opencode)
+  if (!isOpencode) {
+    if (!settings.hooks) {
+      settings.hooks = {};
+    }
+    if (!settings.hooks.SessionStart) {
+      settings.hooks.SessionStart = [];
+    }
+
+    const hasPanUpdateHook = settings.hooks.SessionStart.some(entry =>
+      entry.hooks && entry.hooks.some(h => h.command && h.command.includes('pan-check-update'))
+    );
+
+    if (!hasPanUpdateHook) {
+      settings.hooks.SessionStart.push({
+        hooks: [
+          {
+            type: 'command',
+            command: updateCheckCommand
+          }
+        ]
+      });
+      console.log(`  ${green}✓${reset} Configured update check hook`);
+    }
+
+    // Configure PostToolUse hook for context window monitoring
+    if (!settings.hooks.PostToolUse) {
+      settings.hooks.PostToolUse = [];
+    }
+
+    const hasContextMonitorHook = settings.hooks.PostToolUse.some(entry =>
+      entry.hooks && entry.hooks.some(h => h.command && h.command.includes('pan-context-monitor'))
+    );
+
+    if (!hasContextMonitorHook) {
+      settings.hooks.PostToolUse.push({
+        hooks: [
+          {
+            type: 'command',
+            command: contextMonitorCommand
+          }
+        ]
+      });
+      console.log(`  ${green}✓${reset} Configured context window monitor hook`);
+    }
+
+    // v3.4+: SubagentStop hook for automatic cost logging.
+    // Gemini + OpenCode may not implement SubagentStop; we still register
+    // the entry — hosts that don't fire the event simply never trigger it.
+    if (!settings.hooks.SubagentStop) {
+      settings.hooks.SubagentStop = [];
+    }
+    const hasCostLoggerHook = settings.hooks.SubagentStop.some(entry =>
+      entry.hooks && entry.hooks.some(h => h.command && h.command.includes('pan-cost-logger'))
+    );
+    if (!hasCostLoggerHook) {
+      settings.hooks.SubagentStop.push({
+        hooks: [
+          {
+            type: 'command',
+            command: costLoggerCommand
+          }
+        ]
+      });
+      console.log(`  ${green}✓${reset} Configured cost logger hook`);
+    }
+  }
+
+  return { settingsPath, settings, statuslineCommand, runtime };
+}
+
+/**
+ * Apply statusline config, then print completion message
+ */
+function finishInstall(settingsPath, settings, statuslineCommand, shouldInstallStatusline, runtime = 'claude', isGlobal = true) {
+  const isOpencode = runtime === 'opencode';
+  const isCodex = runtime === 'codex';
+  const isCopilot = runtime === 'copilot';
+
+  if (shouldInstallStatusline && !isOpencode && !isCodex) {
+    if (isCopilot) {
+      // Copilot CLI: statusline stored in config.json
+      settings.statusLine = {
+        command: statuslineCommand
+      };
+    } else {
+      settings.statusLine = {
+        type: 'command',
+        command: statuslineCommand
+      };
+    }
+    console.log(`  ${green}✓${reset} Configured statusline`);
+  }
+
+  // Write settings/config when runtime supports it
+  if (!isCodex) {
+    writeSettings(settingsPath, settings);
+  }
+
+  // Configure OpenCode permissions
+  if (isOpencode) {
+    configureOpencodePermissions(isGlobal);
+  }
+
+  // E-9: Opus 4.7 capability detection — warn if user's default model lacks
+  // features Spec A relies on (1M ctx, extended thinking, prompt caching).
+  if (!args.includes('--skip-warnings')) {
+    try {
+      const settingsPath = path.join(targetDir, 'settings.json');
+      const settingsRaw = fs.readFileSync(settingsPath, 'utf-8');
+      const settings = JSON.parse(settingsRaw);
+      const modelField = settings && settings.model;
+      if (typeof modelField === 'string' && modelField.trim()) {
+        const caps = detectModelCapabilities(modelField);
+        if (!caps.has_1m_ctx || !caps.has_thinking) {
+          const missing = [
+            !caps.has_1m_ctx ? '1M context (E-2 map-codebase single-shot)' : null,
+            !caps.has_thinking ? 'extended thinking (E-3, E-10, E-11)' : null,
+          ].filter(Boolean).join(', ');
+          console.log(`
+  ${yellow}ℹ${reset} PAN 2.10+ is tuned for Opus 4.7. Default model "${modelField}" lacks: ${missing}.
+     Features degrade gracefully, but upgrade to claude-opus-4-7 for best results.`);
+        }
+      }
+    } catch {
+      // No settings.json, no model field, or JSON parse error — skip silently.
+    }
+  }
+
+  let program = 'Claude Code';
+  if (runtime === 'opencode') program = 'OpenCode';
+  if (runtime === 'gemini') program = 'Gemini';
+  if (runtime === 'codex') program = 'Codex';
+  if (runtime === 'copilot') program = 'GitHub Copilot CLI';
+
+  let command = '/pan:new-project';
+  if (runtime === 'opencode') command = '/pan-new-project';
+  if (runtime === 'codex') command = '$pan-new-project';
+  if (runtime === 'copilot') command = '/pan-new-project';
+  console.log(`
+  ${green}Done!${reset} Open a blank directory in ${program} and run ${cyan}${command}${reset}.
+
+  ${cyan}Join the community:${reset} https://discord.gg/pan-wizard
+`);
+}
+
+/**
+ * Handle statusline configuration with optional prompt
+ */
+function handleStatusline(settings, isInteractive, callback) {
+  const hasExisting = settings.statusLine != null;
+
+  if (!hasExisting) {
+    callback(true);
+    return;
+  }
+
+  if (forceStatusline) {
+    callback(true);
+    return;
+  }
+
+  if (!isInteractive) {
+    console.log(`  ${yellow}⚠${reset} Skipping statusline (already configured)`);
+    console.log(`    Use ${cyan}--force-statusline${reset} to replace\n`);
+    callback(false);
+    return;
+  }
+
+  const existingCmd = settings.statusLine.command || settings.statusLine.url || '(custom)';
+
+  const rl = readline.createInterface({
+    input: process.stdin,
+    output: process.stdout
+  });
+
+  console.log(`
+  ${yellow}⚠${reset} Existing statusline detected\n
+  Your current statusline:
+    ${dim}command: ${existingCmd}${reset}
+
+  PAN includes a statusline showing:
+    • Model name
+    • Current task (from todo list)
+    • Context window usage (color-coded)
+
+  ${cyan}1${reset}) Keep existing
+  ${cyan}2${reset}) Replace with PAN statusline
+`);
+
+  rl.question(`  Choice ${dim}[1]${reset}: `, (answer) => {
+    rl.close();
+    const choice = answer.trim() || '1';
+    callback(choice === '2');
+  });
+}
+
+/**
+ * Prompt for runtime selection
+ */
+function promptRuntime(callback) {
+  const rl = readline.createInterface({
+    input: process.stdin,
+    output: process.stdout
+  });
+
+  let answered = false;
+
+  rl.on('close', () => {
+    if (!answered) {
+      answered = true;
+      console.log(`\n  ${yellow}Installation cancelled${reset}\n`);
+      process.exit(0);
+    }
+  });
+
+  console.log(`  ${yellow}Which runtime(s) would you like to install for?${reset}\n\n  ${cyan}1${reset}) Claude Code  ${dim}(~/.claude)${reset}
+  ${cyan}2${reset}) OpenCode     ${dim}(~/.config/opencode)${reset} - open source, free models
+  ${cyan}3${reset}) Gemini       ${dim}(~/.gemini)${reset}
+  ${cyan}4${reset}) Codex        ${dim}(~/.codex)${reset}
+  ${cyan}5${reset}) Copilot CLI  ${dim}(~/.copilot)${reset} - GitHub's terminal agent
+  ${cyan}6${reset}) All
+`);
+
+  rl.question(`  Choice ${dim}[1]${reset}: `, (answer) => {
+    answered = true;
+    rl.close();
+    const choice = answer.trim() || '1';
+    if (choice === '6') {
+      callback(['claude', 'opencode', 'gemini', 'codex', 'copilot']);
+    } else if (choice === '5') {
+      callback(['copilot']);
+    } else if (choice === '4') {
+      callback(['codex']);
+    } else if (choice === '3') {
+      callback(['gemini']);
+    } else if (choice === '2') {
+      callback(['opencode']);
+    } else {
+      callback(['claude']);
+    }
+  });
+}
+
+/**
+ * Install PAN for all selected runtimes
+ */
+function installAllRuntimes(runtimes, isGlobal, isInteractive) {
+  const results = [];
+
+  for (const runtime of runtimes) {
+    const result = install(isGlobal, runtime);
+    results.push(result);
+  }
+
+  const statuslineRuntimes = ['claude', 'gemini', 'copilot'];
+  const primaryStatuslineResult = results.find(r => statuslineRuntimes.includes(r.runtime));
+
+  const finalize = (shouldInstallStatusline) => {
+    for (const result of results) {
+      const useStatusline = statuslineRuntimes.includes(result.runtime) && shouldInstallStatusline;
+      finishInstall(
+        result.settingsPath,
+        result.settings,
+        result.statuslineCommand,
+        useStatusline,
+        result.runtime,
+        isGlobal
+      );
+    }
+  };
+
+  if (primaryStatuslineResult) {
+    handleStatusline(primaryStatuslineResult.settings, isInteractive, finalize);
+  } else {
+    finalize(false);
+  }
+}
+
+// Main logic
+if (hasGlobal && hasLocal) {
+  console.error(`  ${yellow}Cannot specify both --global and --local${reset}`);
+  process.exit(1);
+} else if (explicitConfigDir && hasLocal) {
+  console.error(`  ${yellow}Cannot use --config-dir with --local${reset}`);
+  process.exit(1);
+} else if (hasUninstall) {
+  if (!hasGlobal && !hasLocal) {
+    console.error(`  ${yellow}--uninstall requires --global or --local${reset}`);
+    process.exit(1);
+  }
+  const runtimes = selectedRuntimes.length > 0 ? selectedRuntimes : ['claude'];
+  for (const runtime of runtimes) {
+    uninstall(hasGlobal, runtime);
+  }
+} else if (selectedRuntimes.length > 0) {
+  if (!hasGlobal && !hasLocal) {
+    // Default: project-level install. Use --global to install for all projects.
+    console.log(`  ${dim}Defaulting to project-level install (use --global for user-level).${reset}\n`);
+    installAllRuntimes(selectedRuntimes, false, false);
+  } else {
+    installAllRuntimes(selectedRuntimes, hasGlobal, false);
+  }
+} else if (hasGlobal || hasLocal) {
+  // Default to Claude if no runtime specified but location is
+  installAllRuntimes(['claude'], hasGlobal, false);
+} else {
+  // Interactive
+  if (!process.stdin.isTTY) {
+    console.log(`  ${yellow}Non-interactive terminal detected, defaulting to Claude Code project-level install${reset}\n`);
+    installAllRuntimes(['claude'], false, false);
+  } else {
+    promptRuntime((runtimes) => {
+      // Default: project-level install. Pass --global on CLI for user-level.
+      console.log(`  ${dim}Defaulting to project-level install (use --global for user-level).${reset}\n`);
+      installAllRuntimes(runtimes, false, true);
+    });
+  }
+}