optiprune 1.1.0 → 1.3.0

package/dist/config-loader.js

@@ -13,6 +13,7 @@ export const DEFAULT_CONFIG = {
     json: false,
     includeConventionalEntries: true,
     externalContracts: [],
+    pathAliases: new Map(),
     layers: {
         smtTimeoutMs: 100,
         isolateMemoryLimitMb: 16,

package/dist/config-loader.js.map

@@ -1 +1 @@
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+{"version":3,"file":"config-loader.js","sourceRoot":"","sources":["../src/config-loader.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,OAAO,CAAC;AACzB,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAEzC,OAAO,EAAE,kBAAkB,EAAE,cAAc,EAAE,iBAAiB,EAAE,MAAM,eAAe,CAAC;AAEtF,MAAM,CAAC,MAAM,cAAc,GAAoB;IAC7C,OAAO,EAAE,iBAAiB,CAAC,OAAO,CAAC,GAAG,EAAE,CAAC;IACzC,KAAK,EAAE,EAAE;IACT,UAAU,EAAE,kBAAkB;IAC9B,MAAM,EAAE,cAAc;IACtB,mBAAmB,EAAE,IAAI;IACzB,WAAW,EAAE,EAAE;IACf,MAAM,EAAE,MAAM;IACd,IAAI,EAAE,KAAK;IACX,0BAA0B,EAAE,IAAI;IAChC,iBAAiB,EAAE,EAAE;IACrB,WAAW,EAAE,IAAI,GAAG,EAAoB;IACxC,MAAM,EAAE;QACN,YAAY,EAAE,GAAG;QACjB,oBAAoB,EAAE,EAAE;QACxB,mBAAmB,EAAE,IAAI;KAC1B;IACD,KAAK,EAAE;QACL,eAAe,EAAE,SAAS;QAC1B,kBAAkB,EAAE,SAAS;QAC7B,oBAAoB,EAAE,SAAS;QAC/B,0BAA0B,EAAE,SAAS;KACtC;CACF,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,OAAe;IAC9C,MAAM,WAAW,GAAG;QAClB,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,qBAAqB,CAAC;QACzC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,qBAAqB,CAAC;QACzC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,sBAAsB,CAAC;KAC3C,CAAC;IAEF,KAAK,MAAM,UAAU,IAAI,WAAW,EAAE,CAAC;QACrC,IAAI,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;YAC9B,IAAI,CAAC;gBACH,4EAA4E;gBAC5E,6CAA6C;gBAC7C,MAAM,SAAS,GAAG,aAAa,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC;gBACjD,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,CAAC;gBACvC,OAAO,MAAM,CAAC,OAAO,IAAI,MAAM,CAAC;YAClC,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,OAAO,CAAC,IAAI,CAAC,uCAAuC,UAAU,GAAG,EAAE,CAAC,CAAC,CAAC;YACxE,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,EAAE,CAAC;AACZ,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,IAAqB,EAAE,UAAkB;IACnE,OAAO;QACL,GAAG,IAAI;QACP,GAAG,UAAU;QACb,MAAM,EAAE;YACN,GAAG,IAAI,CAAC,MAAM;YACd,GAAG,UAAU,CAAC,MAAM;SACrB;QACD,KAAK,EAAE;YACL,GAAG,IAAI,CAAC,KAAK;YACb,GAAG,UAAU,CAAC,KAAK;SACpB;QACD,iBAAiB,EAAE;YACjB,GAAG,IAAI,CAAC,iBAAiB;YACzB,GAAG,CAAC,UAAU,CAAC,iBAAiB,IAAI,EAAE,CAAC;SACxC;KACiB,CAAC;AACvB,CAAC"}

package/dist/engine.d.ts

@@ -0,0 +1,11 @@
+import { AnalysisContext, AnalyzerPlugin } from "./types.js";
+export declare class PluginEngine {
+    private plugins;
+    register(plugin: AnalyzerPlugin): void;
+    runUsageInstructions(context: AnalysisContext): void;
+}
+/**
+ * Zod Instruction Plugin
+ * A lightweight instruction set for identifying Zod schema usage.
+ */
+export declare const ZodPlugin: AnalyzerPlugin;

package/dist/engine.js

@@ -0,0 +1,85 @@
+import traverse from "@babel/traverse";
+import * as t from "@babel/types";
+export class PluginEngine {
+    plugins = [];
+    register(plugin) {
+        this.plugins.push(plugin);
+    }
+    runUsageInstructions(context) {
+        for (const module of context.modules.values()) {
+            if (!module.ast)
+                continue;
+            // Use the default export of traverse
+            const traverseFn = traverse.default || traverse;
+            traverseFn(module.ast, {
+                enter: (path) => {
+                    // Layer 2: Dead Branch Pruning (Integrated into walk)
+                    if (t.isIfStatement(path.node)) {
+                        const test = path.node.test;
+                        if (t.isBooleanLiteral(test) && test.value === false) {
+                            path.skip();
+                            return;
+                        }
+                        if (t.isBinaryExpression(test) && t.isNumericLiteral(test.left) && t.isNumericLiteral(test.right)) {
+                            if (test.operator === '===' && test.left.value !== test.right.value) {
+                                path.skip();
+                                return;
+                            }
+                        }
+                    }
+                    for (const plugin of this.plugins) {
+                        for (const instruction of plugin.instructions) {
+                            if (instruction.identifyUsage) {
+                                const usedIdentifiers = instruction.identifyUsage(path.node, module, context);
+                                usedIdentifiers.forEach(id => {
+                                    context.usedExports.add(`${module.id}:${id}`);
+                                });
+                            }
+                        }
+                    }
+                }
+            });
+        }
+    }
+}
+/**
+ * Zod Instruction Plugin
+ * A lightweight instruction set for identifying Zod schema usage.
+ */
+export const ZodPlugin = {
+    name: "zod-plugin",
+    instructions: [
+        {
+            name: "zod-schema-usage",
+            description: "Identifies exports that are Zod schemas and marks them as used.",
+            identifyUsage(node) {
+                const used = [];
+                // Pattern: const User = z.object(...)
+                if (t.isVariableDeclarator(node) && t.isIdentifier(node.id)) {
+                    const init = node.init;
+                    const isZod = t.isCallExpression(init) &&
+                        ((t.isMemberExpression(init.callee) && t.isIdentifier(init.callee.object) && (init.callee.object.name === 'z' || init.callee.object.name === 'zod')) ||
+                            (t.isIdentifier(init.callee) && init.callee.name === 'z'));
+                    if (isZod) {
+                        used.push(node.id.name);
+                    }
+                }
+                return used;
+            }
+        },
+        {
+            name: "dynamic-property-access",
+            description: "Handles cases like controller[method]() where method is a string.",
+            identifyUsage(node) {
+                const used = [];
+                if (t.isMemberExpression(node) && node.computed) {
+                    if (t.isStringLiteral(node.property)) {
+                        used.push(node.property.value);
+                    }
+                }
+                return used;
+            }
+        }
+    ]
+};
+//# sourceMappingURL=engine.js.map

package/dist/engine.js.map

@@ -0,0 +1 @@
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package/dist/fs-utils.d.ts

@@ -26,3 +26,4 @@ export declare function readJsonFile<T>(candidate: string): Promise<T | undefine
 export declare function findNearestConfig(startDirectory: string): Promise<string | undefined>;
 export declare function relativeDisplayPath(rootDir: string, candidate: string): string;
 export declare function rootLooksValid(rootDir: string): Promise<boolean>;
+export declare function ingestTsConfigPaths(rootDir: string): Promise<Map<string, string[]>>;

package/dist/fs-utils.js

@@ -332,4 +332,19 @@ export function relativeDisplayPath(rootDir, candidate) {
 export async function rootLooksValid(rootDir) {
     return directoryExists(rootDir);
 }
+export async function ingestTsConfigPaths(rootDir) {
+    const pathAliases = new Map();
+    const tsconfigPath = path.join(rootDir, 'tsconfig.json');
+    try {
+        const tsconfig = JSON.parse(await fs.readFile(tsconfigPath, 'utf8'));
+        const paths = tsconfig.compilerOptions?.paths;
+        if (paths) {
+            for (const [alias, targets] of Object.entries(paths)) {
+                pathAliases.set(alias, targets);
+            }
+        }
+    }
+    catch (e) { }
+    return pathAliases;
+}
 //# sourceMappingURL=fs-utils.js.map

package/dist/fs-utils.js.map

@@ -1 +1 @@
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package/dist/graph.js

@@ -38,7 +38,26 @@ function resolveEdge(edge, source, knownFiles, options) {
     if (edge.rawSpecifier.startsWith(".")) {
         // console.log("Resolving " + edge.rawSpecifier + " from " + source.id + " -> " + target);
     }
-    // 2. Try Monorepo Workspace resolution
+    // 2. Try tsconfig path aliases
+    if (!target && options.pathAliases.size > 0) {
+        for (const [alias, targets] of options.pathAliases.entries()) {
+            const aliasPattern = alias.replace(/\*/g, "(.*)");
+            const matcher = new RegExp(`^${aliasPattern}$`);
+            const match = edge.rawSpecifier.match(matcher);
+            if (match) {
+                for (const targetPattern of targets) {
+                    const resolvedSpecifier = targetPattern.replace(/\*/g, match[1] || "");
+                    const absoluteTarget = path.resolve(options.rootDir, resolvedSpecifier);
+                    target = resolveLocalSpecifier(source.id, absoluteTarget, knownFiles, options.extensions);
+                    if (target)
+                        break;
+                }
+            }
+            if (target)
+                break;
+        }
+    }
+    // 3. Try Monorepo Workspace resolution
     if (!target && options.monorepo) {
         // Check if the specifier starts with a workspace package name
         for (const [pkgName, pkg] of options.monorepo.packageMap.entries()) {
@@ -273,11 +292,6 @@ export function buildImportUsage(modules) {
 export function buildUsedExports(modules) {
     const usedExports = new Set();
     const importUsage = buildImportUsage(modules);
-    if (modules.size < 10) { // Only log for small test cases
-        for (const [mid, usage] of importUsage.entries()) {
-            console.log(`[DEBUG] Usage for ${mid}: wildcard=${usage.wildcard}, reExportOnly=${usage.reExportOnly}, names=[${Array.from(usage.names).join(',')}]`);
-        }
-    }
     for (const [moduleId, usage] of importUsage.entries()) {
         const module = modules.get(moduleId);
         if (!module) {

package/dist/graph.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -7,11 +7,15 @@ import { analyzeLayer3 } from "./layer3.js";
 import { analyzeLayer4 } from "./layer4.js";
 import { analyzeLayer5 } from "./layer5.js";
 import { analyzeLayer6 } from "./layer6.js";
+import { SemanticGraph } from "./semantic-graph.js";
+import { TopologyManager } from "./topology-manager.js";
+import { SymbolicEngine } from "./symbolic-engine.js";
 import { buildMonorepoTopology } from "./workspace.js";
+import { PluginEngine, ZodPlugin } from "./engine.js";
 import { loadCache, saveCache, getFileHash, isCacheValid } from "./cache.js";
-import { compileGlobs, conventionalEntryPatterns, DEFAULT_IGNORE, discoverPackageEntryPatterns, discoverSourceFiles, expandEntryPatterns, normalizeAbsolute, relativeDisplayPath, rootLooksValid, } from "./fs-utils.js";
+import { compileGlobs, conventionalEntryPatterns, DEFAULT_IGNORE, discoverPackageEntryPatterns, discoverSourceFiles, expandEntryPatterns, ingestTsConfigPaths, normalizeAbsolute, relativeDisplayPath, rootLooksValid, } from "./fs-utils.js";
 import { CONFIDENCE_RANK } from "./types.js";
-const VERSION = "1.0.0"; // Optiprune version
+const VERSION = "1.2.0-p1"; // Optiprune version
 import { DEFAULT_CONFIG, loadConfig, mergeConfig } from "./config-loader.js";
 async function resolveOptions(options) {
     const rootDir = normalizeAbsolute(options.rootDir ?? process.cwd());
@@ -21,10 +25,12 @@ async function resolveOptions(options) {
         ...options,
         rootDir,
     });
+    const pathAliases = await ingestTsConfigPaths(rootDir);
     return {
         ...merged,
         entry: merged.entry?.map((entry) => normalizeAbsolute(path.resolve(rootDir, entry))) ?? [],
         ignore: [...DEFAULT_IGNORE, ...(merged.ignore ?? [])],
+        pathAliases,
     };
 }
 export async function analyze(options) {
@@ -48,6 +54,9 @@ export async function analyze(options) {
     }
     const allSourceFiles = await discoverSourceFiles(rootDir, extensions, compiledIgnorePatterns);
     const modules = new Map();
+    const semanticGraph = new SemanticGraph();
+    const topologyManager = new TopologyManager(semanticGraph);
+    const symbolicEngine = new SymbolicEngine(semanticGraph);
     let filesParsed = 0;
     let filesRecovered = 0;
     let filesFallback = 0;
@@ -137,6 +146,28 @@ export async function analyze(options) {
         });
     }
     const context = contextWithGraph(modules, entryPoints, resolvedOptions);
+    context.semanticGraph = semanticGraph;
+    context.symbolicContracts = new Map();
+    // Gated Layer 2: Plugin-based Instruction Engine (Hardening)
+    const pluginEngine = new PluginEngine();
+    pluginEngine.register(ZodPlugin);
+    pluginEngine.runUsageInstructions(context);
+    // Headless Living Graph Engine: Initial Ingestion
+    for (const module of modules.values()) {
+        // In a full implementation, we would extract semantic nodes from the AST here.
+        // For now, we create a representative FileNode.
+        const fileNode = {
+            id: SemanticGraph.generateLei(module.id, 'File'),
+            contentHash: SemanticGraph.generateContentHash(module.sourceText),
+            type: 'File',
+            name: module.id,
+            fileId: module.id,
+            metadata: {},
+            incomingReferences: [],
+            outgoingReferences: []
+        };
+        semanticGraph.addNode(fileNode);
+    }
     // Gated Layer 5: Schema Alignment
     if (hasFrameworkNodes || resolvedOptions.externalContracts?.length) {
         await analyzeLayer5(context);
@@ -252,6 +283,9 @@ export async function analyze(options) {
     // Phase 3: Layer 4 (node:vm sandbox)
     const layer4Findings = await analyzeLayer4(context);
     findings.push(...layer4Findings);
+    // Phase 4: Headless Living Graph Engine (Symbolic Evaluation)
+    const symbolicFindings = await symbolicEngine.evaluateContracts(context);
+    findings.push(...symbolicFindings);
     const summary = {
         filesDiscovered: allSourceFiles.length,
         filesParsed,
@@ -307,6 +341,9 @@ export async function analyze(options) {
     };
 }
 export function shouldFail(report, failOn) {
+    if (failOn === "none") {
+        return false;
+    }
     const failThreshold = CONFIDENCE_RANK[failOn];
     return report.findings.some((f) => CONFIDENCE_RANK[f.confidence] >= failThreshold);
 }

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/semantic-graph.d.ts

@@ -0,0 +1,44 @@
+import type { Range } from "./types.js";
+export type SemanticNodeType = 'File' | 'Function' | 'Class' | 'Variable' | 'Export' | 'Import' | 'Dynamic' | 'Unknown';
+export type ReferenceKind = 'CALLS' | 'IMPORTS' | 'EXPORTS' | 'DEFINES' | 'USES' | 'TYPE_DEPENDENCY';
+export interface SemanticNode {
+    id: string;
+    contentHash: string;
+    type: SemanticNodeType;
+    name?: string;
+    location?: Range;
+    fileId: string;
+    metadata: Record<string, any>;
+    incomingReferences: Reference[];
+    outgoingReferences: Reference[];
+    isStale?: boolean;
+}
+export interface Reference {
+    sourceNodeId: string;
+    targetNodeId: string;
+    kind: ReferenceKind;
+    metadata?: Record<string, any> | undefined;
+}
+export declare class SemanticGraph {
+    private nodes;
+    private fileToNodes;
+    /**
+     * Generates a stable Logical Entity Identifier (LEI).
+     */
+    static generateLei(fileId: string, type: SemanticNodeType, name?: string): string;
+    /**
+     * Generates a content-addressed hash for change detection.
+     */
+    static generateContentHash(content: string): string;
+    addNode(node: SemanticNode): void;
+    getNode(id: string): SemanticNode | undefined;
+    removeNode(id: string): void;
+    addReference(sourceId: string, targetId: string, kind: ReferenceKind, metadata?: Record<string, any>): void;
+    getNodesInFile(fileId: string): SemanticNode[];
+    getAllNodes(): SemanticNode[];
+    /**
+     * Returns nodes that have no incoming references of a certain kind.
+     * Useful for initial dead code detection.
+     */
+    getOrphanedNodes(kind?: ReferenceKind): SemanticNode[];
+}

package/dist/semantic-graph.js

@@ -0,0 +1,88 @@
+import { createHash } from "node:crypto";
+export class SemanticGraph {
+    nodes = new Map();
+    fileToNodes = new Map();
+    /**
+     * Generates a stable Logical Entity Identifier (LEI).
+     */
+    static generateLei(fileId, type, name) {
+        return `symbol:${fileId}#${type}${name ? ':' + name : ''}`;
+    }
+    /**
+     * Generates a content-addressed hash for change detection.
+     */
+    static generateContentHash(content) {
+        return createHash("sha256").update(content).digest("hex");
+    }
+    addNode(node) {
+        this.nodes.set(node.id, node);
+        if (!this.fileToNodes.has(node.fileId)) {
+            this.fileToNodes.set(node.fileId, new Set());
+        }
+        this.fileToNodes.get(node.fileId).add(node.id);
+    }
+    getNode(id) {
+        return this.nodes.get(id);
+    }
+    removeNode(id) {
+        const node = this.nodes.get(id);
+        if (!node)
+            return;
+        // Remove all references associated with this node
+        for (const ref of node.incomingReferences) {
+            const sourceNode = this.nodes.get(ref.sourceNodeId);
+            if (sourceNode) {
+                sourceNode.outgoingReferences = sourceNode.outgoingReferences.filter(r => r.targetNodeId !== id);
+            }
+        }
+        for (const ref of node.outgoingReferences) {
+            const targetNode = this.nodes.get(ref.targetNodeId);
+            if (targetNode) {
+                targetNode.incomingReferences = targetNode.incomingReferences.filter(r => r.sourceNodeId !== id);
+            }
+        }
+        this.nodes.delete(id);
+        this.fileToNodes.get(node.fileId)?.delete(id);
+    }
+    addReference(sourceId, targetId, kind, metadata) {
+        const sourceNode = this.nodes.get(sourceId);
+        const targetNode = this.nodes.get(targetId);
+        if (!sourceNode || !targetNode) {
+            // In a real implementation, we might want to handle pending references
+            // if the target node hasn't been parsed yet.
+            return;
+        }
+        const reference = {
+            sourceNodeId: sourceId,
+            targetNodeId: targetId,
+            kind,
+            metadata: metadata ?? undefined
+        };
+        sourceNode.outgoingReferences.push(reference);
+        targetNode.incomingReferences.push(reference);
+    }
+    getNodesInFile(fileId) {
+        const nodeIds = this.fileToNodes.get(fileId);
+        if (!nodeIds)
+            return [];
+        return Array.from(nodeIds).map(id => this.nodes.get(id)).filter(Boolean);
+    }
+    getAllNodes() {
+        return Array.from(this.nodes.values());
+    }
+    /**
+     * Returns nodes that have no incoming references of a certain kind.
+     * Useful for initial dead code detection.
+     */
+    getOrphanedNodes(kind) {
+        return Array.from(this.nodes.values()).filter(node => {
+            if (node.type === 'File')
+                return false; // Files are entry points or handled differently
+            const refs = kind
+                ? node.incomingReferences.filter(r => r.kind === kind)
+                : node.incomingReferences;
+            return refs.length === 0;
+        });
+    }
+}
+//# sourceMappingURL=semantic-graph.js.map

package/dist/semantic-graph.js.map

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package/dist/symbolic-engine.d.ts

@@ -0,0 +1,19 @@
+import type { AnalysisContext, Finding } from "./types.js";
+import { SemanticGraph } from "./semantic-graph.js";
+export interface SymbolicExecutionContract {
+    nodeId: string;
+    inputs: Record<string, 'symbolic' | any>;
+    constraints: any[];
+    stateSpace: Map<string, any[]>;
+}
+export declare class SymbolicEngine {
+    private graph;
+    private contracts;
+    constructor(graph: SemanticGraph);
+    registerContract(contract: SymbolicExecutionContract): void;
+    /**
+     * Evaluates dynamic nodes based on their contracts.
+     * This is a simplified implementation of Abstract Interpretation.
+     */
+    evaluateContracts(context: AnalysisContext): Promise<Finding[]>;
+}

package/dist/symbolic-engine.js

@@ -0,0 +1,51 @@
+export class SymbolicEngine {
+    graph;
+    contracts = new Map();
+    constructor(graph) {
+        this.graph = graph;
+    }
+    registerContract(contract) {
+        this.contracts.set(contract.nodeId, contract);
+    }
+    /**
+     * Evaluates dynamic nodes based on their contracts.
+     * This is a simplified implementation of Abstract Interpretation.
+     */
+    async evaluateContracts(context) {
+        const findings = [];
+        for (const [nodeId, contract] of this.contracts) {
+            const node = this.graph.getNode(nodeId);
+            if (!node)
+                continue;
+            // Example: Evaluate dynamic property access
+            // const handler = handlers[config.mode];
+            if (node.metadata.dynamicType === 'property-access') {
+                const objectName = node.metadata.objectName;
+                const propertyVar = node.metadata.propertyVar;
+                const possibleStates = contract.stateSpace.get(propertyVar) || [];
+                for (const state of possibleStates) {
+                    // In a real implementation, we would look up the actual object property
+                    // and create a live reference in the semantic graph.
+                    const targetNodeName = `${objectName}.${state}`;
+                    const targetNode = this.graph.getAllNodes().find(n => n.name === targetNodeName);
+                    if (targetNode) {
+                        this.graph.addReference(nodeId, targetNode.id, 'CALLS', { state });
+                    }
+                    else {
+                        findings.push({
+                            rule: "unknown-dynamic-import",
+                            severity: "warning",
+                            confidence: "medium",
+                            message: `[Symbolic] Could not resolve dynamic link for state: ${state}`,
+                            file: node.fileId,
+                            location: node.location ?? undefined,
+                            evidence: { nodeId, state }
+                        });
+                    }
+                }
+            }
+        }
+        return findings;
+    }
+}
+//# sourceMappingURL=symbolic-engine.js.map

package/dist/symbolic-engine.js.map

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package/dist/topology-manager.d.ts

@@ -0,0 +1,23 @@
+import { SemanticGraph, SemanticNode } from "./semantic-graph.js";
+export declare class TopologyManager {
+    private graph;
+    constructor(graph: SemanticGraph);
+    /**
+     * Processes a set of new/updated nodes for a file and updates the graph.
+     * Implements a Soft-Delete (Tombstone) strategy for resilient parsing.
+     */
+    updateFile(fileId: string, newNodes: SemanticNode[], parseSuccess?: boolean): Set<string>;
+    /**
+     * Transitively marks all nodes that depend on the given nodeId.
+     */
+    private markAffectedDependents;
+    /**
+     * Detects orphaned nodes (dead code) using Tarjan's algorithm for SCC-aware detection.
+     * This treats circular dependency cycles as a single unit.
+     */
+    detectDeadCode(): SemanticNode[];
+    /**
+     * Tarjan's algorithm for finding Strongly Connected Components.
+     */
+    private findSCCs;
+}

package/dist/topology-manager.js

@@ -0,0 +1,144 @@
+export class TopologyManager {
+    graph;
+    constructor(graph) {
+        this.graph = graph;
+    }
+    /**
+     * Processes a set of new/updated nodes for a file and updates the graph.
+     * Implements a Soft-Delete (Tombstone) strategy for resilient parsing.
+     */
+    updateFile(fileId, newNodes, parseSuccess = true) {
+        const affectedNodeIds = new Set();
+        const existingNodes = this.graph.getNodesInFile(fileId);
+        const existingNodeMap = new Map(existingNodes.map(n => [n.id, n]));
+        const newNodeMap = new Map(newNodes.map(n => [n.id, n]));
+        if (!parseSuccess) {
+            // If parse failed, mark all existing nodes as stale but don't purge them
+            for (const oldNode of existingNodes) {
+                oldNode.isStale = true;
+            }
+            return affectedNodeIds;
+        }
+        // 1. Identify removed nodes or nodes that changed content
+        for (const oldNode of existingNodes) {
+            const newNode = newNodeMap.get(oldNode.id);
+            if (!newNode) {
+                // Node was completely removed
+                this.markAffectedDependents(oldNode.id, affectedNodeIds);
+                this.graph.removeNode(oldNode.id);
+            }
+            else if (oldNode.contentHash !== newNode.contentHash) {
+                // Content changed, mark as affected but keep LEI
+                affectedNodeIds.add(oldNode.id);
+                oldNode.contentHash = newNode.contentHash;
+                oldNode.isStale = false;
+                // In a real implementation, we would re-extract references for the updated node
+            }
+            else {
+                // Node is still there and unchanged
+                oldNode.isStale = false;
+            }
+        }
+        // 2. Add new nodes
+        for (const newNode of newNodes) {
+            if (!existingNodeMap.has(newNode.id)) {
+                this.graph.addNode(newNode);
+                affectedNodeIds.add(newNode.id);
+            }
+        }
+        return affectedNodeIds;
+    }
+    /**
+     * Transitively marks all nodes that depend on the given nodeId.
+     */
+    markAffectedDependents(nodeId, affected) {
+        const node = this.graph.getNode(nodeId);
+        if (!node || affected.has(nodeId))
+            return;
+        affected.add(nodeId);
+        for (const ref of node.incomingReferences) {
+            this.markAffectedDependents(ref.sourceNodeId, affected);
+        }
+    }
+    /**
+     * Detects orphaned nodes (dead code) using Tarjan's algorithm for SCC-aware detection.
+     * This treats circular dependency cycles as a single unit.
+     */
+    detectDeadCode() {
+        const allNodes = this.graph.getAllNodes();
+        const deadNodes = [];
+        // 1. Find all SCCs in the graph
+        const sccs = this.findSCCs(allNodes);
+        // 2. For each SCC, check if it has any incoming references from outside the SCC
+        for (const scc of sccs) {
+            const sccNodeIds = new Set(scc.map(n => n.id));
+            let hasExternalInflow = false;
+            for (const node of scc) {
+                // Files are considered entry points for now
+                if (node.type === 'File') {
+                    hasExternalInflow = true;
+                    break;
+                }
+                for (const ref of node.incomingReferences) {
+                    if (!sccNodeIds.has(ref.sourceNodeId)) {
+                        hasExternalInflow = true;
+                        break;
+                    }
+                }
+                if (hasExternalInflow)
+                    break;
+            }
+            if (!hasExternalInflow) {
+                deadNodes.push(...scc);
+            }
+        }
+        return deadNodes;
+    }
+    /**
+     * Tarjan's algorithm for finding Strongly Connected Components.
+     */
+    findSCCs(nodes) {
+        let index = 0;
+        const stack = [];
+        const indices = new Map();
+        const lowlink = new Map();
+        const onStack = new Set();
+        const sccs = [];
+        const strongconnect = (v) => {
+            indices.set(v.id, index);
+            lowlink.set(v.id, index);
+            index++;
+            stack.push(v);
+            onStack.add(v.id);
+            for (const ref of v.outgoingReferences) {
+                const w = this.graph.getNode(ref.targetNodeId);
+                if (!w)
+                    continue;
+                if (!indices.has(w.id)) {
+                    strongconnect(w);
+                    lowlink.set(v.id, Math.min(lowlink.get(v.id), lowlink.get(w.id)));
+                }
+                else if (onStack.has(w.id)) {
+                    lowlink.set(v.id, Math.min(lowlink.get(v.id), indices.get(w.id)));
+                }
+            }
+            if (lowlink.get(v.id) === indices.get(v.id)) {
+                const scc = [];
+                let w;
+                do {
+                    w = stack.pop();
+                    onStack.delete(w.id);
+                    scc.push(w);
+                } while (w.id !== v.id);
+                sccs.push(scc);
+            }
+        };
+        for (const node of nodes) {
+            if (!indices.has(node.id)) {
+                strongconnect(node);
+            }
+        }
+        return sccs;
+    }
+}
+//# sourceMappingURL=topology-manager.js.map

package/dist/topology-manager.js.map

@@ -0,0 +1 @@
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package/dist/types.d.ts

@@ -1,4 +1,5 @@
 export type Confidence = "high" | "medium" | "low" | "info";
+export type FailOn = Confidence | "none";
 export type Severity = "error" | "warning" | "info";
 export type ParseStatus = "parsed" | "recovered" | "fallback";
 export type EdgeKind = "import" | "export-from" | "export-all" | "require" | "dynamic-literal" | "dynamic-pattern" | "unknown-dynamic";
@@ -90,7 +91,7 @@ export interface Finding {
     confidence: Confidence;
     message: string;
     file: string;
-    location?: Range;
+    location?: Range | undefined;
     evidence: Record<string, unknown>;
 }
 export interface AnalyzerOptions {
@@ -101,7 +102,7 @@ export interface AnalyzerOptions {
     reportUnusedExports?: boolean;
     schemaEnums?: Record<string, string[]>;
     externalContracts?: string[];
-    failOn?: "high" | "medium" | "low" | "none";
+    failOn?: FailOn;
     json?: boolean;
     includeConventionalEntries?: boolean;
 }
@@ -114,7 +115,7 @@ export interface Config {
     externalContracts?: string[];
     reportUnusedExports?: boolean;
     includeConventionalEntries?: boolean;
-    failOn?: Confidence;
+    failOn?: FailOn;
     json?: boolean;
     layers?: {
         smtTimeoutMs?: number;
@@ -130,10 +131,11 @@ export interface ResolvedOptions {
     ignore: string[];
     reportUnusedExports: boolean;
     schemaEnums: Record<string, string[]>;
-    failOn: Confidence;
+    failOn: FailOn;
     json: boolean;
     includeConventionalEntries: boolean;
     monorepo?: MonorepoGraph;
+    pathAliases: Map<string, string[]>;
     externalContracts: string[];
     layers: {
         smtTimeoutMs: number;
@@ -196,10 +198,18 @@ export interface AnalysisContext {
     usedExports: Set<string>;
     candidateBranches: CandidateBranch[];
     monorepo?: MonorepoGraph;
+    semanticGraph?: any;
+    symbolicContracts?: Map<string, any>;
+}
+export interface PluginInstruction {
+    name: string;
+    description: string;
+    identifyUsage(node: any, module: ModuleRecord, context: AnalysisContext): string[];
 }
 export interface AnalyzerPlugin {
     name: string;
-    analyze(context: AnalysisContext): Finding[];
+    instructions: PluginInstruction[];
+    analyze?(context: AnalysisContext): Finding[];
 }
-export declare const CONFIDENCE_RANK: Record<Confidence | "none", number>;
+export declare const CONFIDENCE_RANK: Record<FailOn, number>;
 export declare function defineConfig(config: Config): Config;

package/dist/types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../src/types.ts"],"names":[],"mappings":"AA+PA,MAAM,CAAC,MAAM,eAAe,GAA2B;IACrD,IAAI,EAAE,CAAC;IACP,GAAG,EAAE,CAAC;IACN,MAAM,EAAE,CAAC;IACT,IAAI,EAAE,CAAC;IACP,IAAI,EAAE,CAAC,CAAC,EAAE,yCAAyC;CACpD,CAAC;AAEF,MAAM,UAAU,YAAY,CAAC,MAAc;IACzC,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "optiprune",
-  "version": "1.1.0",
+  "version": "1.3.0",
   "description": "Resilient static dead-code analyzer for TypeScript and JavaScript workspaces.",
   "type": "module",
   "main": "./dist/index.js",
@@ -66,14 +66,14 @@
   "scripts": {
     "build": "tsc -p tsconfig.json",
     "check": "tsc -p tsconfig.json --noEmit",
-    "test": "pnpm vitest run --no-file-parallelism",
+    "test": "vitest run --no-file-parallelism",
     "test:watch": "vitest",
     "analyze": "node ./dist/cli.js",
     "docs:dev": "vitepress dev docs",
     "docs:build": "vitepress build docs",
     "docs:preview": "vitepress preview docs",
     "prepublishOnly": "npm run build",
-    "release": "node -e \"fs.rmSync('dist', { recursive: true, force: true })\" && pnpm install && npm run build"
+    "release": "node -e \"fs.rmSync('dist', { recursive: true, force: true })\" && npm ci && npm run build"
   },
   "dependencies": {
     "@babel/cli": "^8.0.4",
@@ -102,7 +102,7 @@
     "vue": "^3.5.40"
   },
   "engines": {
-    "node": ">=20.0.0"
+    "node": "^22.18.0 || >=24.11.0"
   },
   "license": "MIT",
   "directories": {