opkg 0.5.0 → 0.6.1

package/dist/utils/package-index-yml.js

@@ -1,14 +1,18 @@
 import { join, dirname } from 'path';
 import * as yaml from 'js-yaml';
+import { FILE_PATTERNS } from '../constants/index.js';
 import { exists, readTextFile, writeTextFile, ensureDir } from './fs.js';
-import { getLocalPackageDir } from './paths.js';
+import { getLocalOpenPackageDir, getLocalPackageContentDir } from './paths.js';
 import { normalizePathForProcessing } from './path-normalization.js';
 import { logger } from './logger.js';
-export const PACKAGE_INDEX_FILENAME = 'package.index.yml';
 const HEADER_COMMENT = '# This file is managed by OpenPackage. Do not edit manually.';
-export function getPackageIndexPath(cwd, packageName) {
-    const packageDir = getLocalPackageDir(cwd, packageName);
-    return join(packageDir, PACKAGE_INDEX_FILENAME);
+export function getPackageIndexPath(cwd, packageName, location = 'nested') {
+    if (location === 'root') {
+        return join(getLocalOpenPackageDir(cwd), FILE_PATTERNS.PACKAGE_INDEX_YML);
+    }
+    // Nested: use content directory (cwd/.openpackage/packages/<name>/.openpackage/)
+    const contentDir = getLocalPackageContentDir(cwd, packageName);
+    return join(contentDir, FILE_PATTERNS.PACKAGE_INDEX_YML);
 }
 export function ensureTrailingSlash(value) {
     return value.endsWith('/') ? value : `${value}/`;
@@ -63,8 +67,9 @@ export function sanitizeIndexData(data) {
         files: sortMapping(entries)
     };
 }
-export async function readPackageIndex(cwd, packageName) {
-    const indexPath = getPackageIndexPath(cwd, packageName);
+export async function readPackageIndex(cwd, packageName, location = 'nested') {
+    const canonicalPath = getPackageIndexPath(cwd, packageName, location);
+    const indexPath = canonicalPath;
     if (!(await exists(indexPath))) {
         return null;
     }
@@ -82,7 +87,7 @@ export async function readPackageIndex(cwd, packageName) {
             };
         }
         return {
-            path: indexPath,
+            path: canonicalPath,
             packageName,
             workspace: sanitized.workspace,
             files: sanitized.files
@@ -91,7 +96,7 @@ export async function readPackageIndex(cwd, packageName) {
     catch (error) {
         logger.warn(`Failed to read package index at ${indexPath}: ${error}`);
         return {
-            path: indexPath,
+            path: canonicalPath,
             packageName,
             workspace: { version: '', hash: undefined },
             files: {}
@@ -102,7 +107,7 @@ export async function writePackageIndex(record) {
     const { path: indexPath, files } = record;
     const workspaceVer = record.workspace?.version;
     if (!workspaceVer) {
-        throw new Error('workspace.version is required when writing package.index.yml');
+        throw new Error(`workspace.version is required when writing ${FILE_PATTERNS.PACKAGE_INDEX_YML}`);
     }
     const workspace = {
         hash: record.workspace?.hash,

package/dist/utils/package-index-yml.js.map

@@ -1 +1 @@
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package/dist/utils/package-installation.js

@@ -1,15 +1,12 @@
 import { logger } from './logger.js';
 import { promptPlatformSelection } from './prompts.js';
-import { detectAllPlatforms } from '../core/platforms.js';
-import { extractRemoteErrorReason } from './error-reasons.js';
+import { getDetectedPlatforms } from '../core/platforms.js';
 /**
  * Detect existing platforms in the project
+ * Wrapper around getDetectedPlatforms that adds debug logging
  */
 export async function detectPlatforms(targetDir) {
-    const platformDetectionResults = await detectAllPlatforms(targetDir);
-    const detectedPlatforms = platformDetectionResults
-        .filter(result => result.detected)
-        .map(result => result.name);
+    const detectedPlatforms = await getDetectedPlatforms(targetDir);
     if (detectedPlatforms.length > 0) {
         logger.debug(`Auto-detected platforms: ${detectedPlatforms.join(', ')}`);
     }
@@ -21,112 +18,6 @@ export async function detectPlatforms(targetDir) {
 export async function promptForPlatformSelection() {
     console.log('\n🤖 Platform Detection');
     console.log('No AI development platform detected in this project.');
-    return await promptPlatformSelection();
-}
-/**
- * Display installation summary
- */
-export function displayInstallationSummary(totalInstalled, totalSkipped, totalPackages, results) {
-    console.log(`\n✓ Installation Summary:`);
-    console.log(`✓ Successfully installed: ${totalInstalled}/${totalPackages} packages`);
-    if (totalSkipped > 0) {
-        console.log(`❌ Failed to install: ${totalSkipped} packages`);
-        console.log('\nFailed packages:');
-        results.filter(r => !r.success).forEach(result => {
-            console.log(`  • ${result.name}: ${result.error}`);
-        });
-    }
-}
-/**
- * Display installation results
- */
-export function displayInstallationResults(packageName, resolvedPackages, platformResult, options, mainPackage, allAddedFiles, allUpdatedFiles, rootFileResults, missingPackages, missingPackageOutcomes) {
-    // Build installation summary
-    let summaryText = `✓ Installed ${packageName}`;
-    if (mainPackage) {
-        summaryText += `@${mainPackage.version}`;
-    }
-    console.log(`${summaryText}`);
-    const dependencyPackages = resolvedPackages.filter(f => !f.isRoot);
-    if (dependencyPackages.length > 0) {
-        console.log(`✓ Installed dependencies: ${dependencyPackages.length}`);
-        for (const dep of dependencyPackages) {
-            const packageSpecifier = typeof dep.name === 'string' && dep.name.startsWith('@')
-                ? dep.name
-                : `@${dep.name}`;
-            console.log(`   ├── ${packageSpecifier}@${dep.version}`);
-        }
-    }
-    console.log(`✓ Total packages processed: ${resolvedPackages.length}`);
-    // Show detailed file list
-    if (allAddedFiles && allAddedFiles.length > 0) {
-        console.log(`✓ Added files: ${allAddedFiles.length}`);
-        const sortedFiles = [...allAddedFiles].sort((a, b) => a.localeCompare(b));
-        for (const file of sortedFiles) {
-            console.log(`   ├── ${file}`);
-        }
-    }
-    if (allUpdatedFiles && allUpdatedFiles.length > 0) {
-        console.log(`✓ Updated files: ${allUpdatedFiles.length}`);
-        const sortedFiles = [...allUpdatedFiles].sort((a, b) => a.localeCompare(b));
-        for (const file of sortedFiles) {
-            console.log(`   ├── ${file}`);
-        }
-    }
-    // Root file installation results
-    if (rootFileResults) {
-        const totalRootFiles = rootFileResults.installed.length + rootFileResults.updated.length;
-        if (totalRootFiles > 0) {
-            console.log(`✓ Root files: ${totalRootFiles} file(s)`);
-            // Show newly created root files
-            if (rootFileResults.installed.length > 0) {
-                const sortedInstalled = [...rootFileResults.installed].sort((a, b) => a.localeCompare(b));
-                for (const file of sortedInstalled) {
-                    console.log(`   ├── ${file} (created)`);
-                }
-            }
-            // Show updated root files
-            if (rootFileResults.updated.length > 0) {
-                const sortedUpdated = [...rootFileResults.updated].sort((a, b) => a.localeCompare(b));
-                for (const file of sortedUpdated) {
-                    console.log(`   ├── ${file} (updated)`);
-                }
-            }
-        }
-    }
-    // Platform and IDE template output
-    if (platformResult.created.length > 0) {
-        console.log(`✓ Created platform directories: ${platformResult.created.join(', ')}`);
-    }
-    // Report missing packages (displayed last)
-    if (missingPackages && missingPackages.length > 0) {
-        console.log(`\n⚠️  Missing dependencies detected:`);
-        for (const missing of missingPackages) {
-            const reasonLabel = formatMissingDependencyReason(missingPackageOutcomes?.[missing]);
-            console.log(`   • ${missing} (${reasonLabel})`);
-        }
-        console.log(`\n💡 To resolve missing dependencies:`);
-        console.log(`   • Create locally: opkg init && opkg save`);
-        console.log(`   • Pull from remote: opkg pull ${missingPackages.join(' ')}`);
-        console.log(`   • Remove from package.yml`);
-        console.log('');
-    }
-}
-function formatMissingDependencyReason(outcome) {
-    if (!outcome) {
-        return 'not found in registry';
-    }
-    switch (outcome.reason) {
-        case 'not-found':
-            return 'not found in remote registry';
-        case 'access-denied':
-            return 'access denied';
-        case 'network':
-            return 'network error';
-        case 'integrity':
-            return 'integrity check failed';
-        default:
-            return extractRemoteErrorReason(outcome.message || 'unknown error');
-    }
+    return (await promptPlatformSelection());
 }
 //# sourceMappingURL=package-installation.js.map

package/dist/utils/package-installation.js.map

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package/dist/utils/package-local-files.js

@@ -1,38 +1,5 @@
-import { FILE_PATTERNS } from '../constants/index.js';
-import { exists, isDirectory, readTextFile } from './fs.js';
-import { findFilesByExtension } from './file-processing.js';
-import { PACKAGE_INDEX_FILENAME } from './package-index-yml.js';
-import { isAllowedRegistryPath, isRootRegistryPath, isSkippableRegistryPath, normalizeRegistryPath } from './registry-entry-filter.js';
-const UTF8_ENCODING = 'utf8';
+import { readPackageFilesForRegistry } from './package-copy.js';
 export async function readLocalPackageFilesForIndex(packageDir) {
-    if (!(await exists(packageDir)) || !(await isDirectory(packageDir))) {
-        return [];
-    }
-    const entries = await findFilesByExtension(packageDir, [], packageDir);
-    const files = [];
-    for (const entry of entries) {
-        const normalizedPath = normalizeRegistryPath(entry.relativePath);
-        if (normalizedPath === PACKAGE_INDEX_FILENAME) {
-            continue;
-        }
-        const isAllowed = isAllowedRegistryPath(normalizedPath);
-        const isRoot = isRootRegistryPath(normalizedPath);
-        const isYamlOverride = isYamlOverrideFile(normalizedPath);
-        const isPackageYml = normalizedPath === FILE_PATTERNS.PACKAGE_YML;
-        const isRootLevelFile = !normalizedPath.includes('/');
-        if (!isAllowed && !isRoot && !isYamlOverride && !isPackageYml && !isRootLevelFile) {
-            continue;
-        }
-        const content = await readTextFile(entry.fullPath, UTF8_ENCODING);
-        files.push({
-            path: normalizedPath,
-            content,
-            encoding: UTF8_ENCODING
-        });
-    }
-    return files;
-}
-function isYamlOverrideFile(normalizedPath) {
-    return normalizedPath !== FILE_PATTERNS.PACKAGE_YML && isSkippableRegistryPath(normalizedPath);
+    return await readPackageFilesForRegistry(packageDir);
 }
 //# sourceMappingURL=package-local-files.js.map

package/dist/utils/package-local-files.js.map

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package/dist/utils/package-management.js

@@ -1,15 +1,19 @@
-import { basename, join, relative } from 'path';
+import { basename, relative } from 'path';
 import semver from 'semver';
 import { parsePackageYml, writePackageYml } from './package-yml.js';
-import { exists, ensureDir, writeTextFile, walkFiles, remove } from './fs.js';
+import { exists, ensureDir } from './fs.js';
 import { logger } from './logger.js';
 import { getLocalOpenPackageDir, getLocalPackageYmlPath, getLocalPackagesDir, getLocalPackageDir } from './paths.js';
-import { DEPENDENCY_ARRAYS } from '../constants/index.js';
+import { DEPENDENCY_ARRAYS, PACKAGE_PATHS } from '../constants/index.js';
 import { createCaretRange, hasExplicitPrereleaseIntent, isPrereleaseVersion } from './version-ranges.js';
 import { extractBaseVersion } from './version-generator.js';
+import { isUnversionedVersion } from './package-versioning.js';
 import { normalizePackageName, arePackageNamesEquivalent } from './package-name.js';
 import { packageManager } from '../core/package.js';
-import { PACKAGE_INDEX_FILENAME } from './package-index-yml.js';
+import { promptPackageDetailsForNamed } from './prompts.js';
+import { writePackageFilesToDirectory } from './package-copy.js';
+import { getPackageFilesDir, getPackageYmlPath } from '../core/package-context.js';
+import { buildNormalizedIncludeSet, isManifestPath, normalizePackagePath } from './manifest-paths.js';
 /**
  * Ensure local OpenPackage directory structure exists
  * Shared utility for both install and save commands
@@ -23,18 +27,17 @@ export async function ensureLocalOpenPackageStructure(cwd) {
     ]);
 }
 /**
- * Create a basic package.yml file if it doesn't exist
+ * Create a basic package.yml file for workspace if it doesn't exist
  * Shared utility for both install and save commands
  * @param force - If true, overwrite existing package.yml
  * @returns the package.yml if it was created, null if it already existed and force=false
  */
-export async function createBasicPackageYml(cwd, force = false) {
+export async function createWorkspacePackageYml(cwd, force = false) {
     await ensureLocalOpenPackageStructure(cwd);
     const packageYmlPath = getLocalPackageYmlPath(cwd);
     const projectName = basename(cwd);
     const basicPackageYml = {
         name: projectName,
-        version: '0.1.0',
         packages: [],
         'dev-packages': []
     };
@@ -52,12 +55,84 @@ export async function createBasicPackageYml(cwd, force = false) {
     console.log(`📋 Initialized workspace package.yml in .openpackage/`);
     return basicPackageYml;
 }
+/**
+ * Ensure a nested package directory and package.yml exist, optionally prompting for details.
+ * This is for NESTED packages only. Root packages use different flow.
+ */
+export async function ensurePackageWithYml(cwd, packageName, options = {}) {
+    await ensureLocalOpenPackageStructure(cwd);
+    const normalizedName = normalizePackageName(packageName);
+    const packageDir = getPackageFilesDir(cwd, 'nested', normalizedName);
+    const packageYmlPath = getPackageYmlPath(cwd, 'nested', normalizedName);
+    await ensureDir(packageDir);
+    let packageConfig;
+    let isNew = false;
+    if (await exists(packageYmlPath)) {
+        packageConfig = await parsePackageYml(packageYmlPath);
+    }
+    else {
+        isNew = true;
+        // Try to seed from existing local registry copy to avoid prompts and preserve metadata.
+        try {
+            const registryExists = await packageManager.packageExists(normalizedName);
+            if (registryExists) {
+                const existing = await packageManager.loadPackage(normalizedName);
+                packageConfig = {
+                    ...existing.metadata,
+                    name: normalizedName,
+                    partial: true
+                };
+                logger.info(`Loaded package.yml for '${normalizedName}' from local registry copy`);
+                console.log(`✓ Loaded package.yml from local registry for ${normalizedName}`);
+            }
+        }
+        catch (error) {
+            logger.debug('Unable to seed package.yml from registry; falling back to prompts', { normalizedName, error });
+        }
+        if (!packageConfig) {
+            if (options.interactive) {
+                console.log(`Create new package "${normalizedName}"`);
+                packageConfig = await promptPackageDetailsForNamed(normalizedName);
+            }
+            else {
+                packageConfig = {
+                    name: normalizedName,
+                    ...(options.defaultVersion ? { version: options.defaultVersion } : {})
+                };
+            }
+            packageConfig = {
+                ...packageConfig,
+                partial: true
+            };
+        }
+        if (!packageConfig.include || packageConfig.include.length === 0) {
+            packageConfig = {
+                ...packageConfig,
+                include: ['**']
+            };
+        }
+        await writePackageYml(packageYmlPath, packageConfig);
+        logger.info(`Created new package '${packageConfig.name}${packageConfig.version ? `@${packageConfig.version}` : ''}' at ${relative(cwd, packageDir)}`);
+    }
+    if (packageConfig.name !== normalizedName) {
+        const updatedConfig = { ...packageConfig, name: normalizedName };
+        await writePackageYml(packageYmlPath, updatedConfig);
+        packageConfig = updatedConfig;
+    }
+    return {
+        normalizedName,
+        packageDir,
+        packageYmlPath,
+        packageConfig,
+        isNew
+    };
+}
 /**
  * Add a package dependency to package.yml with smart placement logic
  * Shared utility for both install and save commands
  */
 export async function addPackageToYml(cwd, packageName, packageVersion, isDev = false, originalVersion, // The original version/range that was requested
-silent = false) {
+silent = false, include) {
     const packageYmlPath = getLocalPackageYmlPath(cwd);
     if (!(await exists(packageYmlPath))) {
         return; // If no package.yml exists, ignore this step
@@ -68,6 +143,7 @@ silent = false) {
     if (!config[DEPENDENCY_ARRAYS.DEV_PACKAGES])
         config[DEPENDENCY_ARRAYS.DEV_PACKAGES] = [];
     const normalizedPackageName = normalizePackageName(packageName);
+    const nameWithVersion = packageVersion ? `${packageName}@${packageVersion}` : packageName;
     const packagesArray = config.packages;
     const devPackagesArray = config[DEPENDENCY_ARRAYS.DEV_PACKAGES];
     const findIndex = (arr) => arr.findIndex(dep => arePackageNamesEquivalent(dep.name, normalizedPackageName));
@@ -88,50 +164,67 @@ silent = false) {
     const existingRange = currentLocation && existingIndex >= 0
         ? config[currentLocation][existingIndex]?.version
         : undefined;
-    const baseVersion = extractBaseVersion(packageVersion);
-    const defaultRange = createCaretRange(baseVersion);
-    let versionToWrite = originalVersion ?? defaultRange;
-    if (!originalVersion && existingRange) {
-        const hasPrereleaseIntent = hasExplicitPrereleaseIntent(existingRange);
-        const isNewVersionStable = !isPrereleaseVersion(packageVersion);
-        if (hasPrereleaseIntent) {
-            if (isNewVersionStable) {
-                // Constraint has explicit prerelease intent and we're packing a stable
-                // version on the same base line: normalize to a stable caret.
-                versionToWrite = createCaretRange(baseVersion);
-                logger.debug(`Updating range from prerelease-including '${existingRange}' to stable '${versionToWrite}' ` +
-                    `for ${packageName} (pack transition to ${packageVersion})`);
+    const shouldOmitVersion = isUnversionedVersion(packageVersion) || isUnversionedVersion(originalVersion);
+    let versionToWrite = shouldOmitVersion ? undefined : originalVersion;
+    if (!shouldOmitVersion && packageVersion) {
+        const baseVersion = extractBaseVersion(packageVersion);
+        const defaultRange = createCaretRange(baseVersion);
+        versionToWrite = originalVersion ?? defaultRange;
+        if (!originalVersion && existingRange) {
+            const hasPrereleaseIntent = hasExplicitPrereleaseIntent(existingRange);
+            const isNewVersionStable = !isPrereleaseVersion(packageVersion);
+            if (hasPrereleaseIntent) {
+                if (isNewVersionStable) {
+                    // Constraint has explicit prerelease intent and we're packing a stable
+                    // version on the same base line: normalize to a stable caret.
+                    versionToWrite = createCaretRange(baseVersion);
+                    logger.debug(`Updating range from prerelease-including '${existingRange}' to stable '${versionToWrite}' ` +
+                        `for ${packageName} (pack transition to ${packageVersion})`);
+                }
+                else {
+                    // For prerelease-intent ranges during saves (prerelease versions),
+                    // always preserve the existing constraint.
+                    versionToWrite = existingRange;
+                }
             }
-            else {
-                // For prerelease-intent ranges during saves (prerelease versions),
-                // always preserve the existing constraint.
+            else if (rangeIncludesVersion(existingRange, baseVersion)) {
+                // Stable (non-prerelease) constraint that already includes the new base
+                // version: keep it unchanged.
                 versionToWrite = existingRange;
             }
+            else {
+                // Stable constraint that does not include the new base version: bump to
+                // a new caret on the packed stable.
+                versionToWrite = defaultRange;
+            }
         }
-        else if (rangeIncludesVersion(existingRange, baseVersion)) {
-            // Stable (non-prerelease) constraint that already includes the new base
-            // version: keep it unchanged.
-            versionToWrite = existingRange;
-        }
-        else {
-            // Stable constraint that does not include the new base version: bump to
-            // a new caret on the packed stable.
-            versionToWrite = defaultRange;
-        }
+    }
+    const existingDep = currentLocation && existingIndex >= 0 ? config[currentLocation][existingIndex] : null;
+    let includeToWrite;
+    if (include === undefined) {
+        includeToWrite = existingDep?.include;
+    }
+    else if (include === null) {
+        includeToWrite = undefined;
+    }
+    else {
+        const unique = Array.from(new Set(include));
+        includeToWrite = unique.length > 0 ? unique : undefined;
     }
     const dependency = {
         name: normalizedPackageName,
-        version: versionToWrite
+        ...(versionToWrite ? { version: versionToWrite } : {}),
+        ...(includeToWrite ? { include: includeToWrite } : {})
     };
     // Determine target location (packages vs dev-packages)
     let targetArray;
     if (currentLocation === DEPENDENCY_ARRAYS.DEV_PACKAGES && !isDev) {
         targetArray = DEPENDENCY_ARRAYS.DEV_PACKAGES;
-        logger.info(`Keeping package in dev-packages: ${packageName}@${packageVersion}`);
+        logger.info(`Keeping package in dev-packages: ${nameWithVersion}`);
     }
     else if (currentLocation === DEPENDENCY_ARRAYS.PACKAGES && isDev) {
         targetArray = DEPENDENCY_ARRAYS.DEV_PACKAGES;
-        logger.info(`Moving package from packages to dev-packages: ${packageName}@${packageVersion}`);
+        logger.info(`Moving package from packages to dev-packages: ${nameWithVersion}`);
     }
     else {
         targetArray = isDev ? DEPENDENCY_ARRAYS.DEV_PACKAGES : DEPENDENCY_ARRAYS.PACKAGES;
@@ -146,63 +239,86 @@ silent = false) {
     const targetArrayRef = config[targetArray];
     const existingTargetIndex = currentLocation === targetArray ? findIndex(targetArrayRef) : -1;
     if (existingTargetIndex >= 0) {
-        const existingDep = targetArrayRef[existingTargetIndex];
-        const versionChanged = existingDep.version !== dependency.version;
-        if (versionChanged) {
+        const existingDepForTarget = targetArrayRef[existingTargetIndex];
+        const versionChanged = existingDepForTarget.version !== dependency.version;
+        const includeChanged = JSON.stringify(existingDepForTarget.include ?? []) !== JSON.stringify(includeToWrite ?? []);
+        if (versionChanged || includeChanged) {
             targetArrayRef[existingTargetIndex] = dependency;
             if (!silent) {
-                logger.info(`Updated existing package dependency: ${packageName}@${packageVersion}`);
-                console.log(`✓ Updated ${packageName}@${packageVersion} in main package.yml`);
+                logger.info(`Updated existing package dependency: ${nameWithVersion}`);
+                console.log(`✓ Updated ${nameWithVersion} in main package.yml`);
             }
         }
     }
     else {
         targetArrayRef.push(dependency);
         if (!silent) {
-            logger.info(`Added new package dependency: ${packageName}@${packageVersion}`);
-            console.log(`✓ Added ${packageName}@${packageVersion} to main package.yml`);
+            logger.info(`Added new package dependency: ${nameWithVersion}`);
+            console.log(`✓ Added ${nameWithVersion} to main package.yml`);
         }
     }
     await writePackageYml(packageYmlPath, config);
 }
 /**
  * Copy the full package directory from the local registry into the project structure
- * Removes all existing files except package.index.yml before writing new files
+ * Removes all existing files except the package index file before writing new files
  */
 export async function writeLocalPackageFromRegistry(cwd, packageName, version) {
     const pkg = await packageManager.loadPackage(packageName, version);
     const localPackageDir = getLocalPackageDir(cwd, packageName);
-    await ensureDir(localPackageDir);
-    // Build set of files that should exist after installation
-    const filesToKeep = new Set(pkg.files.map(file => file.path));
-    // Always preserve package.index.yml
-    filesToKeep.add(PACKAGE_INDEX_FILENAME);
-    // List all existing files in the directory
-    const existingFiles = [];
-    if (await exists(localPackageDir)) {
-        for await (const filePath of walkFiles(localPackageDir)) {
-            const relPath = relative(localPackageDir, filePath);
-            existingFiles.push(relPath);
-        }
+    await writePackageFilesToDirectory(localPackageDir, pkg.files, {
+        preserveIndexFile: true
+    });
+}
+/**
+ * Copy a subset of package files from the local registry into the project cache (.openpackage/packages/<pkg>/),
+ * always including package.yml. Used for partial installs.
+ */
+export async function writePartialLocalPackageFromRegistry(cwd, packageName, version, includePaths) {
+    const pkg = await packageManager.loadPackage(packageName, version);
+    const localPackageDir = getLocalPackageDir(cwd, packageName);
+    const normalizedIncludes = buildNormalizedIncludeSet(includePaths);
+    const filteredFiles = pkg.files.filter(file => {
+        const p = normalizePackagePath(file.path);
+        if (isManifestPath(p))
+            return true; // always keep manifest
+        if (p === PACKAGE_PATHS.INDEX_RELATIVE)
+            return false; // never copy index from registry
+        if (!normalizedIncludes)
+            return true;
+        return normalizedIncludes.has(p);
+    });
+    await writePackageFilesToDirectory(localPackageDir, filteredFiles, {
+        preserveIndexFile: true
+    });
+}
+/**
+ * Update only the include list for an existing dependency in package.yml.
+ * - include: string[] => set/dedupe
+ * - include: null     => clear include field
+ * - include: undefined => no-op
+ */
+export async function updatePackageDependencyInclude(cwd, packageName, target, include) {
+    if (include === undefined)
+        return;
+    const packageYmlPath = getLocalPackageYmlPath(cwd);
+    if (!(await exists(packageYmlPath)))
+        return;
+    const config = await parsePackageYml(packageYmlPath);
+    const arr = config[target];
+    if (!arr)
+        return;
+    const idx = arr.findIndex(dep => arePackageNamesEquivalent(dep.name, packageName));
+    if (idx === -1)
+        return;
+    const unique = include === null ? undefined : Array.from(new Set(include));
+    if (unique && unique.length > 0) {
+        arr[idx].include = unique;
     }
-    // Remove files that are no longer in the package (except package.index.yml)
-    const filesToRemove = existingFiles.filter(file => !filesToKeep.has(file));
-    await Promise.all(filesToRemove.map(async (file) => {
-        const filePath = join(localPackageDir, file);
-        try {
-            await remove(filePath);
-            logger.debug(`Removed residual file: ${filePath}`);
-        }
-        catch (error) {
-            logger.warn(`Failed to remove residual file ${filePath}: ${error}`);
-        }
-    }));
-    // Write all files from the package
-    await Promise.all(pkg.files.map(async (file) => {
-        const targetPath = join(localPackageDir, file.path);
-        const encoding = (file.encoding ?? 'utf8');
-        await writeTextFile(targetPath, file.content, encoding);
-    }));
+    else {
+        delete arr[idx].include;
+    }
+    await writePackageYml(packageYmlPath, config);
 }
 function rangeIncludesVersion(range, version) {
     if (!range || !version) {