opencode-skills-collection 4.1.15 → 4.1.16

package/bundled-skills/polars/references/io_guide.md

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+# Polars Data I/O Guide
+
+Comprehensive guide to reading and writing data in various formats with Polars.
+
+## CSV Files
+
+### Reading CSV
+
+**Eager mode (loads into memory):**
+```python
+import polars as pl
+
+# Basic read
+df = pl.read_csv("data.csv")
+
+# With options
+df = pl.read_csv(
+    "data.csv",
+    separator=",",
+    has_header=True,
+    columns=["col1", "col2"],  # Select specific columns
+    n_rows=1000,  # Read only first 1000 rows
+    skip_rows=10,  # Skip first 10 rows
+    dtypes={"col1": pl.Int64, "col2": pl.Utf8},  # Specify types
+    null_values=["NA", "null", ""],  # Define null values
+    encoding="utf-8",
+    ignore_errors=False
+)
+```
+
+**Lazy mode (scans without loading - recommended for large files):**
+```python
+# Scan CSV (builds query plan)
+lf = pl.scan_csv("data.csv")
+
+# Apply operations
+result = lf.filter(pl.col("age") > 25).select("name", "age")
+
+# Execute and load
+df = result.collect()
+```
+
+### Writing CSV
+
+```python
+# Basic write
+df.write_csv("output.csv")
+
+# With options
+df.write_csv(
+    "output.csv",
+    separator=",",
+    include_header=True,
+    null_value="",  # How to represent nulls
+    quote_char='"',
+    line_terminator="\n"
+)
+```
+
+### Multiple CSV Files
+
+**Read multiple files:**
+```python
+# Read all CSVs in directory
+lf = pl.scan_csv("data/*.csv")
+
+# Read specific files
+lf = pl.scan_csv(["file1.csv", "file2.csv", "file3.csv"])
+```
+
+## Parquet Files
+
+Parquet is the recommended format for performance and compression.
+
+### Reading Parquet
+
+**Eager:**
+```python
+df = pl.read_parquet("data.parquet")
+
+# With options
+df = pl.read_parquet(
+    "data.parquet",
+    columns=["col1", "col2"],  # Select specific columns
+    n_rows=1000,  # Read first N rows
+    parallel="auto"  # Control parallelization
+)
+```
+
+**Lazy (recommended):**
+```python
+lf = pl.scan_parquet("data.parquet")
+
+# Automatic predicate and projection pushdown
+result = lf.filter(pl.col("age") > 25).select("name", "age").collect()
+```
+
+### Writing Parquet
+
+```python
+# Basic write
+df.write_parquet("output.parquet")
+
+# With compression
+df.write_parquet(
+    "output.parquet",
+    compression="snappy",  # Options: "snappy", "gzip", "brotli", "lz4", "zstd"
+    statistics=True,  # Write statistics (enables predicate pushdown)
+    use_pyarrow=False  # Use Rust writer (faster)
+)
+```
+
+### Partitioned Parquet (Hive-style)
+
+**Write partitioned:**
+```python
+# Write with partitioning
+df.write_parquet(
+    "output_dir",
+    partition_by=["year", "month"]  # Creates directory structure
+)
+# Creates: output_dir/year=2023/month=01/data.parquet
+```
+
+**Read partitioned:**
+```python
+lf = pl.scan_parquet("output_dir/**/*.parquet")
+
+# Hive partitioning columns are automatically added
+result = lf.filter(pl.col("year") == 2023).collect()
+```
+
+## JSON Files
+
+### Reading JSON
+
+**NDJSON (newline-delimited JSON) - recommended:**
+```python
+df = pl.read_ndjson("data.ndjson")
+
+# Lazy
+lf = pl.scan_ndjson("data.ndjson")
+```
+
+**Standard JSON:**
+```python
+df = pl.read_json("data.json")
+
+# From JSON string
+df = pl.read_json('{"col1": [1, 2], "col2": ["a", "b"]}')
+```
+
+### Writing JSON
+
+```python
+# Write NDJSON
+df.write_ndjson("output.ndjson")
+
+# Write standard JSON
+df.write_json("output.json")
+
+# Pretty printed
+df.write_json("output.json", pretty=True, row_oriented=False)
+```
+
+## Excel Files
+
+### Reading Excel
+
+```python
+# Read first sheet
+df = pl.read_excel("data.xlsx")
+
+# Specific sheet
+df = pl.read_excel("data.xlsx", sheet_name="Sheet1")
+# Or by index
+df = pl.read_excel("data.xlsx", sheet_id=0)
+
+# With options
+df = pl.read_excel(
+    "data.xlsx",
+    sheet_name="Sheet1",
+    columns=["A", "B", "C"],  # Excel columns
+    n_rows=100,
+    skip_rows=5,
+    has_header=True
+)
+```
+
+### Writing Excel
+
+```python
+# Write to Excel
+df.write_excel("output.xlsx")
+
+# Multiple sheets
+with pl.ExcelWriter("output.xlsx") as writer:
+    df1.write_excel(writer, worksheet="Sheet1")
+    df2.write_excel(writer, worksheet="Sheet2")
+```
+
+## Database Connectivity
+
+### Read from Database
+
+```python
+import polars as pl
+
+# Read entire table
+df = pl.read_database("SELECT * FROM users", connection_uri="postgresql://...")
+
+# Using connectorx for better performance
+df = pl.read_database_uri(
+    "SELECT * FROM users WHERE age > 25",
+    uri="postgresql://user:pass@localhost/db"
+)
+```
+
+### Write to Database
+
+```python
+# Using SQLAlchemy
+from sqlalchemy import create_engine
+
+engine = create_engine("postgresql://user:pass@localhost/db")
+df.write_database("table_name", connection=engine)
+
+# With options
+df.write_database(
+    "table_name",
+    connection=engine,
+    if_exists="replace",  # or "append", "fail"
+)
+```
+
+### Common Database Connectors
+
+**PostgreSQL:**
+```python
+uri = "postgresql://username:password@localhost:5432/database"
+df = pl.read_database_uri("SELECT * FROM table", uri=uri)
+```
+
+**MySQL:**
+```python
+uri = "mysql://username:password@localhost:3306/database"
+df = pl.read_database_uri("SELECT * FROM table", uri=uri)
+```
+
+**SQLite:**
+```python
+uri = "sqlite:///path/to/database.db"
+df = pl.read_database_uri("SELECT * FROM table", uri=uri)
+```
+
+## Cloud Storage
+
+### AWS S3
+
+```python
+# Read from S3
+df = pl.read_parquet("s3://bucket/path/to/file.parquet")
+lf = pl.scan_parquet("s3://bucket/path/*.parquet")
+
+# Write to S3
+df.write_parquet("s3://bucket/path/output.parquet")
+
+# With credentials
+import os
+os.environ["AWS_ACCESS_KEY_ID"] = "your_key"
+os.environ["AWS_SECRET_ACCESS_KEY"] = "your_secret"
+os.environ["AWS_REGION"] = "us-west-2"
+
+df = pl.read_parquet("s3://bucket/file.parquet")
+```
+
+### Azure Blob Storage
+
+```python
+# Read from Azure
+df = pl.read_parquet("az://container/path/file.parquet")
+
+# Write to Azure
+df.write_parquet("az://container/path/output.parquet")
+
+# With credentials
+os.environ["AZURE_STORAGE_ACCOUNT_NAME"] = "account"
+os.environ["AZURE_STORAGE_ACCOUNT_KEY"] = "key"
+```
+
+### Google Cloud Storage (GCS)
+
+```python
+# Read from GCS
+df = pl.read_parquet("gs://bucket/path/file.parquet")
+
+# Write to GCS
+df.write_parquet("gs://bucket/path/output.parquet")
+
+# With credentials
+os.environ["GOOGLE_APPLICATION_CREDENTIALS"] = "/path/to/credentials.json"
+```
+
+## Google BigQuery
+
+```python
+# Read from BigQuery
+df = pl.read_database(
+    "SELECT * FROM project.dataset.table",
+    connection_uri="bigquery://project"
+)
+
+# Or using Google Cloud SDK
+from google.cloud import bigquery
+client = bigquery.Client()
+
+query = "SELECT * FROM project.dataset.table WHERE date > '2023-01-01'"
+df = pl.from_pandas(client.query(query).to_dataframe())
+```
+
+## Apache Arrow
+
+### IPC/Feather Format
+
+**Read:**
+```python
+df = pl.read_ipc("data.arrow")
+lf = pl.scan_ipc("data.arrow")
+```
+
+**Write:**
+```python
+df.write_ipc("output.arrow")
+
+# Compressed
+df.write_ipc("output.arrow", compression="zstd")
+```
+
+### Arrow Streaming
+
+```python
+# Write streaming format
+df.write_ipc("output.arrows", compression="zstd")
+
+# Read streaming
+df = pl.read_ipc("output.arrows")
+```
+
+### From/To Arrow
+
+```python
+import pyarrow as pa
+
+# From Arrow Table
+arrow_table = pa.table({"col": [1, 2, 3]})
+df = pl.from_arrow(arrow_table)
+
+# To Arrow Table
+arrow_table = df.to_arrow()
+```
+
+## In-Memory Formats
+
+### Python Dictionaries
+
+```python
+# From dict
+df = pl.DataFrame({
+    "col1": [1, 2, 3],
+    "col2": ["a", "b", "c"]
+})
+
+# To dict
+data_dict = df.to_dict()  # Column-oriented
+data_dict = df.to_dict(as_series=False)  # Lists instead of Series
+```
+
+### NumPy Arrays
+
+```python
+import numpy as np
+
+# From NumPy
+arr = np.array([[1, 2], [3, 4], [5, 6]])
+df = pl.DataFrame(arr, schema=["col1", "col2"])
+
+# To NumPy
+arr = df.to_numpy()
+```
+
+### Pandas DataFrames
+
+```python
+import pandas as pd
+
+# From Pandas
+pd_df = pd.DataFrame({"col": [1, 2, 3]})
+pl_df = pl.from_pandas(pd_df)
+
+# To Pandas
+pd_df = pl_df.to_pandas()
+
+# Zero-copy when possible
+pl_df = pl.from_arrow(pd_df)
+```
+
+### Lists of Rows
+
+```python
+# From list of dicts
+data = [
+    {"name": "Alice", "age": 25},
+    {"name": "Bob", "age": 30}
+]
+df = pl.DataFrame(data)
+
+# To list of dicts
+rows = df.to_dicts()
+
+# From list of tuples
+data = [("Alice", 25), ("Bob", 30)]
+df = pl.DataFrame(data, schema=["name", "age"])
+```
+
+## Streaming Large Files
+
+For datasets larger than memory, use lazy mode with streaming:
+
+```python
+# Streaming mode
+lf = pl.scan_csv("very_large.csv")
+result = lf.filter(pl.col("value") > 100).collect(streaming=True)
+
+# Streaming with multiple files
+lf = pl.scan_parquet("data/*.parquet")
+result = lf.group_by("category").agg(pl.col("value").sum()).collect(streaming=True)
+```
+
+## Best Practices
+
+### Format Selection
+
+**Use Parquet when:**
+- Need compression (up to 10x smaller than CSV)
+- Want fast reads/writes
+- Need to preserve data types
+- Working with large datasets
+- Need predicate pushdown
+
+**Use CSV when:**
+- Need human-readable format
+- Interfacing with legacy systems
+- Data is small
+- Need universal compatibility
+
+**Use JSON when:**
+- Working with nested/hierarchical data
+- Need web API compatibility
+- Data has flexible schema
+
+**Use Arrow IPC when:**
+- Need zero-copy data sharing
+- Fastest serialization required
+- Working between Arrow-compatible systems
+
+### Reading Large Files
+
+```python
+# 1. Always use lazy mode
+lf = pl.scan_csv("large.csv")  # NOT read_csv
+
+# 2. Filter and select early (pushdown optimization)
+result = (
+    lf
+    .select("col1", "col2", "col3")  # Only needed columns
+    .filter(pl.col("date") > "2023-01-01")  # Filter early
+    .collect()
+)
+
+# 3. Use streaming for very large data
+result = lf.filter(...).select(...).collect(streaming=True)
+
+# 4. Read only needed rows during development
+df = pl.read_csv("large.csv", n_rows=10000)  # Sample for testing
+```
+
+### Writing Large Files
+
+```python
+# 1. Use Parquet with compression
+df.write_parquet("output.parquet", compression="zstd")
+
+# 2. Use partitioning for very large datasets
+df.write_parquet("output", partition_by=["year", "month"])
+
+# 3. Write streaming
+lf = pl.scan_csv("input.csv")
+lf.sink_parquet("output.parquet")  # Streaming write
+```
+
+### Performance Tips
+
+```python
+# 1. Specify dtypes when reading CSV
+df = pl.read_csv(
+    "data.csv",
+    dtypes={"id": pl.Int64, "name": pl.Utf8}  # Avoids inference
+)
+
+# 2. Use appropriate compression
+df.write_parquet("output.parquet", compression="snappy")  # Fast
+df.write_parquet("output.parquet", compression="zstd")    # Better compression
+
+# 3. Parallel reading
+df = pl.read_csv("data.csv", parallel="auto")
+
+# 4. Read multiple files in parallel
+lf = pl.scan_parquet("data/*.parquet")  # Automatic parallel read
+```
+
+## Error Handling
+
+```python
+try:
+    df = pl.read_csv("data.csv")
+except pl.exceptions.ComputeError as e:
+    print(f"Error reading CSV: {e}")
+
+# Ignore errors during parsing
+df = pl.read_csv("messy.csv", ignore_errors=True)
+
+# Handle missing files
+from pathlib import Path
+if Path("data.csv").exists():
+    df = pl.read_csv("data.csv")
+else:
+    print("File not found")
+```
+
+## Schema Management
+
+```python
+# Infer schema from sample
+schema = pl.read_csv("data.csv", n_rows=1000).schema
+
+# Use inferred schema for full read
+df = pl.read_csv("data.csv", dtypes=schema)
+
+# Define schema explicitly
+schema = {
+    "id": pl.Int64,
+    "name": pl.Utf8,
+    "date": pl.Date,
+    "value": pl.Float64
+}
+df = pl.read_csv("data.csv", dtypes=schema)
+```