open-wiki-spec 0.1.0 → 0.2.0

package/dist/core/workflow/query/query-search.d.ts

@@ -11,7 +11,9 @@ import type { QueryRequest, QuerySearchResult } from './types.js';
  * Search the vault index for notes relevant to a query question.
  * Returns candidates, graph context, existing queries, and warnings.
  */
-export declare function querySearch(request: QueryRequest, index: VaultIndex): QuerySearchResult;
+export declare function querySearch(request: QueryRequest, index: VaultIndex, options?: {
+    semanticScores?: ReadonlyMap<string, number>;
+}): QuerySearchResult;
 /**
  * Build a structured context document for LLM consumption.
  */

package/dist/core/workflow/query/query-search.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"query-search.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/query/query-search.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AACH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,YAAY,EAAE,iBAAiB,EAAoC,MAAM,YAAY,CAAC;AAQpG;;;GAGG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,YAAY,EAAE,KAAK,EAAE,UAAU,GAAG,iBAAiB,CA+EvF;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,YAAY,EAAE,iBAAiB,GAAG,MAAM,CA4C7E"}
+{"version":3,"file":"query-search.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/query/query-search.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AACH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,YAAY,EAAE,iBAAiB,EAAoC,MAAM,YAAY,CAAC;AASpG;;;GAGG;AACH,wBAAgB,WAAW,CACzB,OAAO,EAAE,YAAY,EACrB,KAAK,EAAE,UAAU,EACjB,OAAO,CAAC,EAAE;IAAE,cAAc,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;CAAE,GACzD,iBAAiB,CAmFnB;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,YAAY,EAAE,iBAAiB,GAAG,MAAM,CA4C7E"}

package/dist/core/workflow/query/query-search.js

@@ -6,12 +6,16 @@ const TOP_CANDIDATES_FOR_GRAPH = 5;
  * Search the vault index for notes relevant to a query question.
  * Returns candidates, graph context, existing queries, and warnings.
  */
-export function querySearch(request, index) {
+export function querySearch(request, index, options) {
     const warnings = [];
     // Normalize question into a RetrievalQuery for the retrieval engine
     const retrievalQuery = normalizeToRetrievalQuery(request.question);
     // Delegate scoring to retrieval engine (plan 05)
-    const retrievalResult = retrieve(index, retrievalQuery, { maxCandidates: MAX_CANDIDATES + 10 });
+    const retrievalOpts = { maxCandidates: MAX_CANDIDATES + 10 };
+    if (options?.semanticScores) {
+        retrievalOpts.semanticScores = options.semanticScores;
+    }
+    const retrievalResult = retrieve(index, retrievalQuery, retrievalOpts);
     // Map ScoredCandidate[] to QueryCandidate[]
     let allCandidates = retrievalResult.candidates.map((sc) => {
         const record = index.records.get(sc.id);

package/dist/core/workflow/query/query-search.js.map

@@ -1 +1 @@
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package/dist/core/workflow/verify/completeness.d.ts

@@ -18,7 +18,7 @@ export declare function checkFeatureCompleteness(feature: IndexRecord, _index: V
 export declare function checkChangeCompleteness(change: IndexRecord, _index: VaultIndex): VerifyIssue[];
 /**
  * Check minimum sections for System, Decision, Source, Query notes.
- * These have less strict requirements than Feature or Change.
+ * These notes should have at least a Purpose or Summary section with meaningful content.
  */
-export declare function checkMinimumSections(_note: IndexRecord): VerifyIssue[];
+export declare function checkMinimumSections(note: IndexRecord): VerifyIssue[];
 //# sourceMappingURL=completeness.d.ts.map

package/dist/core/workflow/verify/completeness.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"completeness.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/completeness.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAQ5D;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,OAAO,EAAE,WAAW,EAAE,MAAM,EAAE,UAAU,GAAG,WAAW,EAAE,CA0DhG;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,UAAU,GAAG,WAAW,EAAE,CAiG9F;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,KAAK,EAAE,WAAW,GAAG,WAAW,EAAE,CAItE"}
+{"version":3,"file":"completeness.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/completeness.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAa5D;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,OAAO,EAAE,WAAW,EAAE,MAAM,EAAE,UAAU,GAAG,WAAW,EAAE,CA0DhG;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,UAAU,GAAG,WAAW,EAAE,CAoH9F;AAsCD;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,WAAW,GAAG,WAAW,EAAE,CA8CrE"}

package/dist/core/workflow/verify/completeness.js

@@ -1,5 +1,9 @@
 const FEATURE_REQUIRED_SECTIONS = ['Purpose', 'Current Behavior', 'Requirements'];
 const CHANGE_REQUIRED_SECTIONS = ['Why'];
+/** Sections whose body must contain meaningful content (not just a heading). */
+const CHANGE_CONTENT_REQUIRED_SECTIONS = ['Why', 'Delta Summary', 'Tasks', 'Validation'];
+/** Minimum non-whitespace characters to consider a section non-empty. */
+const MIN_SECTION_CONTENT_LENGTH = 10;
 /** Threshold for considering a change "complex" (triggers Design Approach warning) */
 const COMPLEX_CHANGE_DELTA_THRESHOLD = 3;
 /**
@@ -143,6 +147,24 @@ export function checkChangeCompleteness(change, _index) {
             suggestion: 'Consider adding a "## Design Approach" section for complex changes.',
         });
     }
+    // Empty required sections check — heading present but body too short
+    for (const section of CHANGE_CONTENT_REQUIRED_SECTIONS) {
+        if (change.headings.includes(section)) {
+            const body = extractSectionBody(change.raw_text, section);
+            const nonWs = body.replace(/\s/g, '');
+            if (nonWs.length < MIN_SECTION_CONTENT_LENGTH) {
+                issues.push({
+                    dimension: 'completeness',
+                    severity: 'warning',
+                    code: 'EMPTY_REQUIRED_SECTION',
+                    message: `Change "${change.id}" has section "${section}" but its body is empty or too short`,
+                    note_id: change.id,
+                    note_path: change.path,
+                    suggestion: `Add meaningful content to the "${section}" section (at least ${MIN_SECTION_CONTENT_LENGTH} characters).`,
+                });
+            }
+        }
+    }
     // System link warning
     if (change.systems.length === 0) {
         issues.push({
@@ -157,14 +179,88 @@ export function checkChangeCompleteness(change, _index) {
     }
     return issues;
 }
+/**
+ * Extract the body text between a heading and the next heading of equal or higher level.
+ */
+function extractSectionBody(rawText, sectionName) {
+    const lines = rawText.split('\n');
+    let capturing = false;
+    let sectionLevel = 0;
+    const bodyLines = [];
+    for (const line of lines) {
+        const headingMatch = line.match(/^(#{1,6})\s+(.+)/);
+        if (headingMatch) {
+            const level = headingMatch[1].length;
+            const title = headingMatch[2].trim();
+            if (capturing) {
+                // Stop at same or higher-level heading
+                if (level <= sectionLevel)
+                    break;
+            }
+            if (!capturing && title === sectionName) {
+                capturing = true;
+                sectionLevel = level;
+                continue; // skip the heading line itself
+            }
+        }
+        if (capturing) {
+            bodyLines.push(line);
+        }
+    }
+    return bodyLines.join('\n');
+}
+/** Note types that require at least a Purpose or Summary section with content. */
+const BODY_REQUIRED_TYPES = new Set(['system', 'decision', 'source', 'query']);
+const BODY_REQUIRED_SECTIONS = ['Purpose', 'Summary'];
 /**
  * Check minimum sections for System, Decision, Source, Query notes.
- * These have less strict requirements than Feature or Change.
+ * These notes should have at least a Purpose or Summary section with meaningful content.
  */
-export function checkMinimumSections(_note) {
-    // For v1, System/Decision/Source/Query have no mandatory section requirements
-    // beyond having valid frontmatter (checked by vault integrity).
-    return [];
+export function checkMinimumSections(note) {
+    if (!BODY_REQUIRED_TYPES.has(note.type))
+        return [];
+    const issues = [];
+    const hasRequiredSection = BODY_REQUIRED_SECTIONS.some((section) => note.headings.includes(section));
+    if (!hasRequiredSection) {
+        issues.push({
+            dimension: 'completeness',
+            severity: 'warning',
+            code: 'MISSING_SECTION',
+            message: `${capitalize(note.type)} "${note.id}" has no Purpose or Summary section`,
+            note_id: note.id,
+            note_path: note.path,
+            suggestion: 'Add a "## Purpose" or "## Summary" section with meaningful content.',
+        });
+    }
+    else {
+        // Check that at least one of the present required sections has content
+        let hasContent = false;
+        for (const section of BODY_REQUIRED_SECTIONS) {
+            if (note.headings.includes(section)) {
+                const body = extractSectionBody(note.raw_text, section);
+                const nonWs = body.replace(/\s/g, '');
+                if (nonWs.length >= MIN_SECTION_CONTENT_LENGTH) {
+                    hasContent = true;
+                    break;
+                }
+            }
+        }
+        if (!hasContent) {
+            issues.push({
+                dimension: 'completeness',
+                severity: 'warning',
+                code: 'EMPTY_REQUIRED_SECTION',
+                message: `${capitalize(note.type)} "${note.id}" has Purpose/Summary section but its body is empty or too short`,
+                note_id: note.id,
+                note_path: note.path,
+                suggestion: `Add meaningful content to the Purpose or Summary section (at least ${MIN_SECTION_CONTENT_LENGTH} characters).`,
+            });
+        }
+    }
+    return issues;
+}
+function capitalize(s) {
+    return s.charAt(0).toUpperCase() + s.slice(1);
 }
 function isComplexChange(change) {
     return change.delta_summary.length >= COMPLEX_CHANGE_DELTA_THRESHOLD;

package/dist/core/workflow/verify/completeness.js.map

@@ -1 +1 @@
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package/dist/core/workflow/verify/correctness.d.ts

@@ -35,4 +35,10 @@ export declare function checkSchemaVersionMatch(_note: IndexRecord, _declaredVer
  * Drift is acceptable during active work but is an error for applied Changes.
  */
 export declare function checkDriftForStatus(change: IndexRecord, index: VaultIndex, coveredByMatrix?: Set<string>): VerifyIssue[];
+/**
+ * Check for unfilled apply markers in Feature bodies after a Change is applied.
+ * Markers like `<!-- ADDED by change: ...` or `<!-- MODIFIED by change: ...` indicate
+ * the agent never filled in the content after apply inserted the markers.
+ */
+export declare function checkUnfilledApplyMarkers(change: IndexRecord, index: VaultIndex): VerifyIssue[];
 //# sourceMappingURL=correctness.d.ts.map

package/dist/core/workflow/verify/correctness.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"correctness.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/correctness.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D;;;;GAIG;AACH,wBAAgB,4BAA4B,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAkKlG;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CA4CpF;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAoC3F;AAED;;GAEG;AACH;;;;;GAKG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,UAAU,GAAG,WAAW,EAAE,CAYvH;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,WAAW,EACnB,KAAK,EAAE,UAAU,EACjB,eAAe,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,GAC5B,WAAW,EAAE,CAiEf"}
+{"version":3,"file":"correctness.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/correctness.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D;;;;GAIG;AACH,wBAAgB,4BAA4B,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAkKlG;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CA4CpF;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAoC3F;AAED;;GAEG;AACH;;;;;GAKG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,UAAU,GAAG,WAAW,EAAE,CAYvH;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,WAAW,EACnB,KAAK,EAAE,UAAU,EACjB,eAAe,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,GAC5B,WAAW,EAAE,CAiEf;AAED;;;;GAIG;AACH,wBAAgB,yBAAyB,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAgC/F"}

package/dist/core/workflow/verify/correctness.js

@@ -336,6 +336,41 @@ export function checkDriftForStatus(change, index, coveredByMatrix) {
     }
     return issues;
 }
+/**
+ * Check for unfilled apply markers in Feature bodies after a Change is applied.
+ * Markers like `<!-- ADDED by change: ...` or `<!-- MODIFIED by change: ...` indicate
+ * the agent never filled in the content after apply inserted the markers.
+ */
+export function checkUnfilledApplyMarkers(change, index) {
+    if (change.status !== 'applied')
+        return [];
+    const issues = [];
+    const MARKER_PATTERN = /<!--\s*(?:ADDED|MODIFIED) by change:\s*/;
+    // Collect unique target feature ids from delta summary
+    const targetFeatureIds = new Set();
+    for (const entry of change.delta_summary) {
+        if (entry.op === 'ADDED' || entry.op === 'MODIFIED') {
+            targetFeatureIds.add(entry.target_note_id);
+        }
+    }
+    for (const featureId of targetFeatureIds) {
+        const featureRecord = index.records.get(featureId);
+        if (!featureRecord)
+            continue;
+        if (MARKER_PATTERN.test(featureRecord.raw_text)) {
+            issues.push({
+                dimension: 'correctness',
+                severity: 'error',
+                code: 'UNFILLED_APPLY_MARKER',
+                message: `Feature "${featureId}" still contains unfilled apply markers after change "${change.id}" was applied`,
+                note_id: change.id,
+                note_path: change.path,
+                suggestion: 'Fill in the marker placeholders in the Feature body, then re-run verify.',
+            });
+        }
+    }
+    return issues;
+}
 /** Check hard prerequisites for planned status */
 function checkPlannedPrerequisites(change) {
     const missing = [];

package/dist/core/workflow/verify/correctness.js.map

@@ -1 +1 @@
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package/dist/core/workflow/verify/index.d.ts

@@ -1,7 +1,7 @@
 export { verify } from './verify.js';
 export type { VerifyOptions } from './verify.js';
 export { checkFeatureCompleteness, checkChangeCompleteness, checkMinimumSections, } from './completeness.js';
-export { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, } from './correctness.js';
+export { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, checkUnfilledApplyMarkers, } from './correctness.js';
 export { checkConflictsViaSequencing, checkDescriptionConsistency, checkDecisionConsistency, checkDependsOnConsistency, } from './coherence.js';
-export { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, resolveLink, } from './vault-integrity.js';
+export { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, titleIdCollisionCheck, resolveLink, } from './vault-integrity.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/core/workflow/verify/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AACrC,YAAY,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjD,OAAO,EACL,wBAAwB,EACxB,uBAAuB,EACvB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,4BAA4B,EAC5B,cAAc,EACd,qBAAqB,EACrB,uBAAuB,EACvB,mBAAmB,GACpB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,wBAAwB,EACxB,yBAAyB,GAC1B,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,uBAAuB,EACvB,mBAAmB,EACnB,eAAe,EACf,qBAAqB,EACrB,2BAA2B,EAC3B,WAAW,GACZ,MAAM,sBAAsB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AACrC,YAAY,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AACjD,OAAO,EACL,wBAAwB,EACxB,uBAAuB,EACvB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,4BAA4B,EAC5B,cAAc,EACd,qBAAqB,EACrB,uBAAuB,EACvB,mBAAmB,EACnB,yBAAyB,GAC1B,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,wBAAwB,EACxB,yBAAyB,GAC1B,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,uBAAuB,EACvB,mBAAmB,EACnB,eAAe,EACf,qBAAqB,EACrB,2BAA2B,EAC3B,qBAAqB,EACrB,WAAW,GACZ,MAAM,sBAAsB,CAAC"}

package/dist/core/workflow/verify/index.js

@@ -1,6 +1,6 @@
 export { verify } from './verify.js';
 export { checkFeatureCompleteness, checkChangeCompleteness, checkMinimumSections, } from './completeness.js';
-export { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, } from './correctness.js';
+export { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, checkUnfilledApplyMarkers, } from './correctness.js';
 export { checkConflictsViaSequencing, checkDescriptionConsistency, checkDecisionConsistency, checkDependsOnConsistency, } from './coherence.js';
-export { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, resolveLink, } from './vault-integrity.js';
+export { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, titleIdCollisionCheck, resolveLink, } from './vault-integrity.js';
 //# sourceMappingURL=index.js.map

package/dist/core/workflow/verify/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/core/workflow/verify/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,OAAO,EACL,wBAAwB,EACxB,uBAAuB,EACvB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,4BAA4B,EAC5B,cAAc,EACd,qBAAqB,EACrB,uBAAuB,EACvB,mBAAmB,GACpB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,wBAAwB,EACxB,yBAAyB,GAC1B,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,uBAAuB,EACvB,mBAAmB,EACnB,eAAe,EACf,qBAAqB,EACrB,2BAA2B,EAC3B,WAAW,GACZ,MAAM,sBAAsB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/core/workflow/verify/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,OAAO,EACL,wBAAwB,EACxB,uBAAuB,EACvB,oBAAoB,GACrB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,4BAA4B,EAC5B,cAAc,EACd,qBAAqB,EACrB,uBAAuB,EACvB,mBAAmB,EACnB,yBAAyB,GAC1B,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,wBAAwB,EACxB,yBAAyB,GAC1B,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,gBAAgB,EAChB,cAAc,EACd,uBAAuB,EACvB,mBAAmB,EACnB,eAAe,EACf,qBAAqB,EACrB,2BAA2B,EAC3B,qBAAqB,EACrB,WAAW,GACZ,MAAM,sBAAsB,CAAC"}

package/dist/core/workflow/verify/vault-integrity.d.ts

@@ -35,8 +35,19 @@ export declare function orphanNoteCheck(index: VaultIndex): VerifyIssue[];
 export declare function archivePlacementCheck(index: VaultIndex): VerifyIssue[];
 /**
  * Convert index warnings of type 'invalid_frontmatter' to VerifyIssues.
+ * Typed-folder frontmatter errors (severity: 'error') are surfaced as verify errors.
+ * Other frontmatter warnings are surfaced as verify warnings.
  */
 export declare function invalidFrontmatterTypeCheck(index: VaultIndex): VerifyIssue[];
+/**
+ * Convert index warnings of type 'empty_typed_note' to VerifyIssues.
+ */
+export declare function emptyTypedNoteCheck(index: VaultIndex): VerifyIssue[];
+/**
+ * Detect title/id collisions: when any note's title matches another note's id.
+ * This can cause ambiguous wikilink resolution.
+ */
+export declare function titleIdCollisionCheck(index: VaultIndex): VerifyIssue[];
 /**
  * Resolve a wikilink target against the vault index.
  * Checks id, title, and aliases.

package/dist/core/workflow/verify/vault-integrity.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vault-integrity.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/vault-integrity.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWjE;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAW/D;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWxE;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAiBhE;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAiBtE;AAED;;GAEG;AACH,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAW5E;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,WAAW,GAAG,SAAS,CAYpF"}
+{"version":3,"file":"vault-integrity.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/vault-integrity.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWjE;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAW/D;AAED;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWxE;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAiBhE;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAiBtE;AAED;;;;GAIG;AACH,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAa5E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAWpE;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,EAAE,CAoBtE;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,GAAG,WAAW,GAAG,SAAS,CAYpF"}

package/dist/core/workflow/verify/vault-integrity.js

@@ -107,19 +107,64 @@ export function archivePlacementCheck(index) {
 }
 /**
  * Convert index warnings of type 'invalid_frontmatter' to VerifyIssues.
+ * Typed-folder frontmatter errors (severity: 'error') are surfaced as verify errors.
+ * Other frontmatter warnings are surfaced as verify warnings.
  */
 export function invalidFrontmatterTypeCheck(index) {
     return index.warnings
         .filter((w) => w.type === 'invalid_frontmatter')
         .map((w) => ({
         dimension: 'vault_integrity',
+        severity: (w.severity === 'error' ? 'error' : 'warning'),
+        code: w.severity === 'error' ? 'TYPED_FOLDER_FRONTMATTER_ERROR' : 'INVALID_FRONTMATTER_TYPE',
+        message: w.message,
+        note_path: w.note_path,
+        suggestion: w.severity === 'error'
+            ? 'This note is in a typed folder and MUST have valid frontmatter. Fix the YAML syntax immediately.'
+            : 'Fix the frontmatter YAML syntax or add missing required fields.',
+    }));
+}
+/**
+ * Convert index warnings of type 'empty_typed_note' to VerifyIssues.
+ */
+export function emptyTypedNoteCheck(index) {
+    return index.warnings
+        .filter((w) => w.type === 'empty_typed_note')
+        .map((w) => ({
+        dimension: 'vault_integrity',
         severity: 'error',
-        code: 'INVALID_FRONTMATTER_TYPE',
+        code: 'EMPTY_TYPED_NOTE',
         message: w.message,
         note_path: w.note_path,
-        suggestion: 'Fix the frontmatter YAML syntax or add missing required fields.',
+        suggestion: 'Add valid frontmatter and content to this note, or remove it from the typed folder.',
     }));
 }
+/**
+ * Detect title/id collisions: when any note's title matches another note's id.
+ * This can cause ambiguous wikilink resolution.
+ */
+export function titleIdCollisionCheck(index) {
+    const issues = [];
+    for (const record of index.records.values()) {
+        const titleLower = record.title.toLowerCase();
+        for (const other of index.records.values()) {
+            if (record.id === other.id)
+                continue;
+            if (titleLower === other.id.toLowerCase()) {
+                issues.push({
+                    dimension: 'vault_integrity',
+                    severity: 'error',
+                    code: 'TITLE_ID_COLLISION',
+                    message: `Note "${record.id}" has title "${record.title}" which matches note "${other.id}"'s id. This may cause ambiguous wikilink resolution.`,
+                    note_id: record.id,
+                    note_path: record.path,
+                    suggestion: 'Rename the title or id to avoid collision.',
+                });
+            }
+        }
+    }
+    return issues;
+}
 /**
  * Resolve a wikilink target against the vault index.
  * Checks id, title, and aliases.

package/dist/core/workflow/verify/vault-integrity.js.map

@@ -1 +1 @@
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+{"version":3,"file":"vault-integrity.js","sourceRoot":"","sources":["../../../../src/core/workflow/verify/vault-integrity.ts"],"names":[],"mappings":"AAQA;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAAC,KAAiB;IAChD,OAAO,KAAK,CAAC,QAAQ;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,cAAc,CAAC;SACxC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACX,SAAS,EAAE,iBAA0B;QACrC,QAAQ,EAAE,OAAgB;QAC1B,IAAI,EAAE,cAAc;QACpB,OAAO,EAAE,CAAC,CAAC,OAAO;QAClB,SAAS,EAAE,CAAC,CAAC,SAAS;QACtB,UAAU,EAAE,gEAAgE;KAC7E,CAAC,CAAC,CAAC;AACR,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,cAAc,CAAC,KAAiB;IAC9C,OAAO,KAAK,CAAC,QAAQ;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,YAAY,CAAC;SACtC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACX,SAAS,EAAE,iBAA0B;QACrC,QAAQ,EAAE,OAAgB;QAC1B,IAAI,EAAE,YAAY;QAClB,OAAO,EAAE,CAAC,CAAC,OAAO;QAClB,SAAS,EAAE,CAAC,CAAC,SAAS;QACtB,UAAU,EAAE,4DAA4D;KACzE,CAAC,CAAC,CAAC;AACR,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,uBAAuB,CAAC,KAAiB;IACvD,OAAO,KAAK,CAAC,QAAQ;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,qBAAqB,CAAC;SAC/C,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACX,SAAS,EAAE,iBAA0B;QACrC,QAAQ,EAAE,OAAgB;QAC1B,IAAI,EAAE,qBAAqB;QAC3B,OAAO,EAAE,CAAC,CAAC,OAAO;QAClB,SAAS,EAAE,CAAC,CAAC,SAAS;QACtB,UAAU,EAAE,qDAAqD;KAClE,CAAC,CAAC,CAAC;AACR,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,mBAAmB,CAAC,KAAiB;IACnD,OAAO,KAAK,CAAC,QAAQ;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,iBAAiB,CAAC;SAC3C,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACX,SAAS,EAAE,iBAA0B;QACrC,QAAQ,EAAE,OAAgB;QAC1B,IAAI,EAAE,iBAAiB;QACvB,OAAO,EAAE,CAAC,CAAC,OAAO;QAClB,SAAS,EAAE,CAAC,CAAC,SAAS;QACtB,UAAU,EAAE,oFAAoF;KACjG,CAAC,CAAC,CAAC;AACR,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,KAAiB;IAC/C,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,KAAK,MAAM,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;QAC5C,IAAI,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,eAAe,CAAC;YAAE,SAAS;QACtD,IAAI,MAAM,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC,IAAI,MAAM,CAAC,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAClE,MAAM,CAAC,IAAI,CAAC;gBACV,SAAS,EAAE,iBAAiB;gBAC5B,QAAQ,EAAE,SAAS;gBACnB,IAAI,EAAE,aAAa;gBACnB,OAAO,EAAE,SAAS,MAAM,CAAC,KAAK,MAAM,MAAM,CAAC,IAAI,qCAAqC;gBACpF,OAAO,EAAE,MAAM,CAAC,EAAE;gBAClB,SAAS,EAAE,MAAM,CAAC,IAAI;gBACtB,UAAU,EAAE,wDAAwD;aACrE,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,qBAAqB,CAAC,KAAiB;IACrD,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,KAAK,MAAM,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;QAC5C,MAAM,WAAW,GAAG,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,kBAAkB,CAAC,CAAC;QAC/D,IAAI,WAAW,IAAI,MAAM,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;YAC/C,MAAM,CAAC,IAAI,CAAC;gBACV,SAAS,EAAE,iBAAiB;gBAC5B,QAAQ,EAAE,OAAO;gBACjB,IAAI,EAAE,yBAAyB;gBAC/B,OAAO,EAAE,SAAS,MAAM,CAAC,EAAE,gCAAgC,MAAM,CAAC,MAAM,wBAAwB;gBAChG,OAAO,EAAE,MAAM,CAAC,EAAE;gBAClB,SAAS,EAAE,MAAM,CAAC,IAAI;gBACtB,UAAU,EAAE,yFAAyF;aACtG,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,2BAA2B,CAAC,KAAiB;IAC3D,OAAO,KAAK,CAAC,QAAQ;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,qBAAqB,CAAC;SAC/C,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACX,SAAS,EAAE,iBAA0B;QACrC,QAAQ,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS,CAAwB;QAC/E,IAAI,EAAE,CAAC,CAAC,QAAQ,KAAK,OAAO,CAAC,CAAC,CAAC,gCAAgC,CAAC,CAAC,CAAC,0BAA0B;QAC5F,OAAO,EAAE,CAAC,CAAC,OAAO;QAClB,SAAS,EAAE,CAAC,CAAC,SAAS;QACtB,UAAU,EAAE,CAAC,CAAC,QAAQ,KAAK,OAAO;YAChC,CAAC,CAAC,kGAAkG;YACpG,CAAC,CAAC,iEAAiE;KACtE,CAAC,CAAC,CAAC;AACR,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,mBAAmB,CAAC,KAAiB;IACnD,OAAO,KAAK,CAAC,QAAQ;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,kBAAkB,CAAC;SAC5C,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;QACX,SAAS,EAAE,iBAA0B;QACrC,QAAQ,EAAE,OAAgB;QAC1B,IAAI,EAAE,kBAAkB;QACxB,OAAO,EAAE,CAAC,CAAC,OAAO;QAClB,SAAS,EAAE,CAAC,CAAC,SAAS;QACtB,UAAU,EAAE,qFAAqF;KAClG,CAAC,CAAC,CAAC;AACR,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,qBAAqB,CAAC,KAAiB;IACrD,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,KAAK,MAAM,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;QAC5C,MAAM,UAAU,GAAG,MAAM,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC;QAC9C,KAAK,MAAM,KAAK,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;YAC3C,IAAI,MAAM,CAAC,EAAE,KAAK,KAAK,CAAC,EAAE;gBAAE,SAAS;YACrC,IAAI,UAAU,KAAK,KAAK,CAAC,EAAE,CAAC,WAAW,EAAE,EAAE,CAAC;gBAC1C,MAAM,CAAC,IAAI,CAAC;oBACV,SAAS,EAAE,iBAAiB;oBAC5B,QAAQ,EAAE,OAAO;oBACjB,IAAI,EAAE,oBAAoB;oBAC1B,OAAO,EAAE,SAAS,MAAM,CAAC,EAAE,gBAAgB,MAAM,CAAC,KAAK,yBAAyB,KAAK,CAAC,EAAE,uDAAuD;oBAC/I,OAAO,EAAE,MAAM,CAAC,EAAE;oBAClB,SAAS,EAAE,MAAM,CAAC,IAAI;oBACtB,UAAU,EAAE,4CAA4C;iBACzD,CAAC,CAAC;YACL,CAAC;QACH,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,WAAW,CAAC,KAAiB,EAAE,IAAY;IACzD,kBAAkB;IAClB,MAAM,IAAI,GAAG,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IACrC,IAAI,IAAI;QAAE,OAAO,IAAI,CAAC;IAEtB,uBAAuB;IACvB,KAAK,MAAM,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC;QAC5C,IAAI,MAAM,CAAC,KAAK,KAAK,IAAI;YAAE,OAAO,MAAM,CAAC;QACzC,IAAI,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC;YAAE,OAAO,MAAM,CAAC;IACnD,CAAC;IAED,OAAO,SAAS,CAAC;AACnB,CAAC"}

package/dist/core/workflow/verify/verify.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/verify.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAgC,YAAY,EAAE,MAAM,0BAA0B,CAAC;AA6B3F,MAAM,WAAW,aAAa;IAC5B,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,wCAAwC;IACxC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4BAA4B;IAC5B,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,0DAA0D;IAC1D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,aAAa,GAAG,YAAY,CAiH/E"}
+{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../../../src/core/workflow/verify/verify.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,KAAK,EAAE,UAAU,EAAe,MAAM,yBAAyB,CAAC;AACvE,OAAO,KAAK,EAAgC,YAAY,EAAE,MAAM,0BAA0B,CAAC;AAgC3F,MAAM,WAAW,aAAa;IAC5B,0CAA0C;IAC1C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,wCAAwC;IACxC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4BAA4B;IAC5B,aAAa,CAAC,EAAE,OAAO,CAAC;IACxB,0DAA0D;IAC1D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,MAAM,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,EAAE,aAAa,GAAG,YAAY,CAsH/E"}

package/dist/core/workflow/verify/verify.js

@@ -1,6 +1,6 @@
-import { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, } from './vault-integrity.js';
+import { duplicateIdCheck, missingIdCheck, unresolvedWikilinkCheck, ambiguousAliasCheck, orphanNoteCheck, archivePlacementCheck, invalidFrontmatterTypeCheck, emptyTypedNoteCheck, titleIdCollisionCheck, } from './vault-integrity.js';
 import { checkFeatureCompleteness, checkChangeCompleteness, checkMinimumSections, } from './completeness.js';
-import { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, } from './correctness.js';
+import { runOperationValidationMatrix, checkStaleBase, checkStatusTransition, checkSchemaVersionMatch, checkDriftForStatus, checkUnfilledApplyMarkers, } from './correctness.js';
 import { checkConflictsViaSequencing, checkDescriptionConsistency, checkDecisionConsistency, checkDependsOnConsistency, } from './coherence.js';
 /**
  * Main verify entry point.
@@ -40,6 +40,8 @@ export function verify(index, options) {
     issues.push(...orphanNoteCheck(index));
     issues.push(...archivePlacementCheck(index));
     issues.push(...invalidFrontmatterTypeCheck(index));
+    issues.push(...emptyTypedNoteCheck(index));
+    issues.push(...titleIdCollisionCheck(index));
     // 2. Completeness checks
     for (const record of targetRecords) {
         if (record.type === 'feature') {
@@ -73,6 +75,8 @@ export function verify(index, options) {
                     }
                 }
                 issues.push(...checkDriftForStatus(record, index, coveredByMatrix));
+                // Check for unfilled apply markers in target Features
+                issues.push(...checkUnfilledApplyMarkers(record, index));
             }
             else {
                 // Pre-apply validation

package/dist/core/workflow/verify/verify.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -1,3 +1,10 @@
+export { buildIndex } from './core/index/build.js';
+export { retrieve } from './core/retrieval/retrieve.js';
+export { verify } from './core/workflow/verify/verify.js';
+export { analyzeSequencing } from './core/sequencing/analyze.js';
+export { parseNote } from './core/parser/note-parser.js';
+export { propose } from './core/workflow/propose/propose.js';
+export { continueChange } from './core/workflow/continue/continue.js';
 export type { NoteType, ChangeStatus, FeatureStatus, GeneralStatus, } from './types/notes.js';
 export type { BaseFrontmatter, FeatureFrontmatter, ChangeFrontmatter, SystemFrontmatter, DecisionFrontmatter, SourceFrontmatter, QueryFrontmatter, Frontmatter, } from './types/frontmatter.js';
 export type { Requirement, Scenario, } from './types/requirement.js';