open-plant 1.3.3 → 1.3.5

package/dist/assets/roi-clip-worker-BuNuUQQg.js

@@ -0,0 +1,2 @@
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+//# sourceMappingURL=roi-clip-worker-BuNuUQQg.js.map

package/dist/assets/roi-clip-worker-BuNuUQQg.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"roi-clip-worker-BuNuUQQg.js","sources":["../src/wsi/roi-geometry.ts","../src/wsi/utils.ts","../src/workers/roi-clip-worker.ts"],"sourcesContent":["import type { WsiRegionCoordinates } from \"./types\";\n\nexport type RoiCoordinate = [number, number];\nexport type RoiLinearRing = RoiCoordinate[];\nexport type RoiPolygonRings = RoiLinearRing[];\nexport type RoiMultiPolygon = RoiPolygonRings[];\nexport type RoiGeometry = RoiLinearRing | RoiPolygonRings | RoiMultiPolygon;\n\nexport function toRoiGeometry(coords: WsiRegionCoordinates | null | undefined): RoiGeometry | null | undefined;\nexport function toRoiGeometry(coords: unknown): RoiGeometry | null | undefined;\nexport function toRoiGeometry(coords: unknown): RoiGeometry | null | undefined {\n\tif (coords == null) return null;\n\tif (isLinearRing(coords) || isPolygonRings(coords) || isMultiPolygon(coords)) {\n\t\treturn coords;\n\t}\n\treturn null;\n}\n\nexport interface PreparedRoiPolygon {\n\touter: RoiLinearRing;\n\tholes: RoiLinearRing[];\n\tminX: number;\n\tminY: number;\n\tmaxX: number;\n\tmaxY: number;\n\tarea: number;\n}\n\nfunction isFiniteNumber(value: unknown): value is number {\n\treturn typeof value === \"number\" && Number.isFinite(value);\n}\n\nfunction isCoordinatePair(value: unknown): value is RoiCoordinate {\n\treturn (\n\t\tArray.isArray(value) &&\n\t\tvalue.length >= 2 &&\n\t\tisFiniteNumber(value[0]) &&\n\t\tisFiniteNumber(value[1])\n\t);\n}\n\nfunction isLinearRing(value: unknown): value is RoiLinearRing {\n\treturn Array.isArray(value) && value.length > 0 && value.every(point => isCoordinatePair(point));\n}\n\nfunction isPolygonRings(value: unknown): value is RoiPolygonRings {\n\treturn Array.isArray(value) && value.length > 0 && value.every(ring => isLinearRing(ring));\n}\n\nfunction isMultiPolygon(value: unknown): value is RoiMultiPolygon {\n\treturn Array.isArray(value) && value.length > 0 && value.every(polygon => isPolygonRings(polygon));\n}\n\nexport function closeRoiRing(coordinates: readonly RoiCoordinate[]): RoiLinearRing {\n\tif (!Array.isArray(coordinates) || coordinates.length < 3) return [];\n\tconst out: RoiLinearRing = [];\n\tfor (const point of coordinates) {\n\t\tif (!Array.isArray(point) || point.length < 2) continue;\n\t\tconst x = Number(point[0]);\n\t\tconst y = Number(point[1]);\n\t\tif (!Number.isFinite(x) || !Number.isFinite(y)) continue;\n\t\tconst prev = out[out.length - 1];\n\t\tif (prev && prev[0] === x && prev[1] === y) continue;\n\t\tout.push([x, y]);\n\t}\n\tif (out.length < 3) return [];\n\tconst first = out[0];\n\tconst last = out[out.length - 1];\n\tif (first[0] !== last[0] || first[1] !== last[1]) {\n\t\tout.push([first[0], first[1]]);\n\t}\n\treturn out.length >= 4 ? out : [];\n}\n\nexport function polygonSignedArea(ring: RoiLinearRing): number {\n\tif (!Array.isArray(ring) || ring.length < 4) return 0;\n\tlet sum = 0;\n\tfor (let i = 0; i < ring.length - 1; i += 1) {\n\t\tconst a = ring[i];\n\t\tconst b = ring[i + 1];\n\t\tsum += a[0] * b[1] - b[0] * a[1];\n\t}\n\treturn sum * 0.5;\n}\n\nfunction normalizePolygonRings(rings: RoiPolygonRings): RoiPolygonRings {\n\tif (!Array.isArray(rings) || rings.length === 0) return [];\n\tconst normalized: RoiLinearRing[] = [];\n\tfor (const ring of rings) {\n\t\tconst closed = closeRoiRing(ring);\n\t\tif (closed.length >= 4) normalized.push(closed);\n\t}\n\tif (normalized.length === 0) return [];\n\tif (normalized.length === 1) return [normalized[0]];\n\n\tlet outerIndex = 0;\n\tlet outerArea = 0;\n\tfor (let i = 0; i < normalized.length; i += 1) {\n\t\tconst area = Math.abs(polygonSignedArea(normalized[i]));\n\t\tif (area <= outerArea) continue;\n\t\touterArea = area;\n\t\touterIndex = i;\n\t}\n\n\tconst out: RoiPolygonRings = [normalized[outerIndex]];\n\tfor (let i = 0; i < normalized.length; i += 1) {\n\t\tif (i === outerIndex) continue;\n\t\tout.push(normalized[i]);\n\t}\n\treturn out;\n}\n\nexport function normalizeRoiGeometry(geometry: RoiGeometry | null | undefined): RoiMultiPolygon {\n\tif (!Array.isArray(geometry) || geometry.length === 0) return [];\n\n\tconst first = geometry[0];\n\tif (isCoordinatePair(first)) {\n\t\tconst polygon = normalizePolygonRings([geometry as RoiLinearRing]);\n\t\treturn polygon.length > 0 ? [polygon] : [];\n\t}\n\n\tif (!Array.isArray(first) || first.length === 0) return [];\n\tconst second = first[0];\n\tif (isCoordinatePair(second)) {\n\t\tconst polygon = normalizePolygonRings(geometry as RoiPolygonRings);\n\t\treturn polygon.length > 0 ? [polygon] : [];\n\t}\n\n\tif (!Array.isArray(second) || second.length === 0 || !isCoordinatePair(second[0])) {\n\t\treturn [];\n\t}\n\n\tconst out: RoiMultiPolygon = [];\n\tfor (const polygon of geometry as RoiMultiPolygon) {\n\t\tconst normalized = normalizePolygonRings(polygon);\n\t\tif (normalized.length > 0) out.push(normalized);\n\t}\n\treturn out;\n}\n\nexport function pointInRing(x: number, y: number, ring: RoiLinearRing): boolean {\n\tlet inside = false;\n\tfor (let i = 0, j = ring.length - 1; i < ring.length; j = i, i += 1) {\n\t\tconst xi = ring[i][0];\n\t\tconst yi = ring[i][1];\n\t\tconst xj = ring[j][0];\n\t\tconst yj = ring[j][1];\n\t\tif (yi === yj) continue;\n\t\tif ((yi > y) === (yj > y)) continue;\n\t\tconst intersect = x < ((xj - xi) * (y - yi)) / (yj - yi) + xi;\n\t\tif (intersect) inside = !inside;\n\t}\n\treturn inside;\n}\n\nexport function pointInPolygonWithHoles(\n\tx: number,\n\ty: number,\n\tpolygon: RoiPolygonRings,\n): boolean {\n\tif (!Array.isArray(polygon) || polygon.length === 0) return false;\n\tconst outer = polygon[0];\n\tif (!outer || outer.length < 4) return false;\n\tif (!pointInRing(x, y, outer)) return false;\n\tfor (let i = 1; i < polygon.length; i += 1) {\n\t\tconst hole = polygon[i];\n\t\tif (!hole || hole.length < 4) continue;\n\t\tif (pointInRing(x, y, hole)) return false;\n\t}\n\treturn true;\n}\n\nexport function prepareRoiPolygons(\n\tgeometries: readonly (RoiGeometry | null | undefined)[] | null | undefined,\n): PreparedRoiPolygon[] {\n\tconst prepared: PreparedRoiPolygon[] = [];\n\tfor (const geometry of geometries ?? []) {\n\t\tconst multipolygon = normalizeRoiGeometry(geometry);\n\t\tfor (const polygon of multipolygon) {\n\t\t\tconst outer = polygon[0];\n\t\t\tif (!outer || outer.length < 4) continue;\n\t\t\tlet minX = Infinity;\n\t\t\tlet minY = Infinity;\n\t\t\tlet maxX = -Infinity;\n\t\t\tlet maxY = -Infinity;\n\t\t\tfor (const [x, y] of outer) {\n\t\t\t\tif (x < minX) minX = x;\n\t\t\t\tif (x > maxX) maxX = x;\n\t\t\t\tif (y < minY) minY = y;\n\t\t\t\tif (y > maxY) maxY = y;\n\t\t\t}\n\t\t\tif (\n\t\t\t\t!Number.isFinite(minX) ||\n\t\t\t\t!Number.isFinite(minY) ||\n\t\t\t\t!Number.isFinite(maxX) ||\n\t\t\t\t!Number.isFinite(maxY)\n\t\t\t) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tlet area = Math.abs(polygonSignedArea(outer));\n\t\t\tfor (let i = 1; i < polygon.length; i += 1) {\n\t\t\t\tarea -= Math.abs(polygonSignedArea(polygon[i]));\n\t\t\t}\n\t\t\tprepared.push({\n\t\t\t\touter,\n\t\t\t\tholes: polygon.slice(1),\n\t\t\t\tminX,\n\t\t\t\tminY,\n\t\t\t\tmaxX,\n\t\t\t\tmaxY,\n\t\t\t\tarea: Math.max(1e-6, area),\n\t\t\t});\n\t\t}\n\t}\n\treturn prepared;\n}\n\nexport function pointInPreparedPolygon(\n\tx: number,\n\ty: number,\n\tpolygon: PreparedRoiPolygon,\n): boolean {\n\tif (x < polygon.minX || x > polygon.maxX || y < polygon.minY || y > polygon.maxY) {\n\t\treturn false;\n\t}\n\tif (!pointInRing(x, y, polygon.outer)) return false;\n\tfor (const hole of polygon.holes) {\n\t\tif (pointInRing(x, y, hole)) return false;\n\t}\n\treturn true;\n}\n\nexport function pointInAnyPreparedPolygon(\n\tx: number,\n\ty: number,\n\tpolygons: readonly PreparedRoiPolygon[],\n): boolean {\n\tfor (const polygon of polygons) {\n\t\tif (!pointInPreparedPolygon(x, y, polygon)) continue;\n\t\treturn true;\n\t}\n\treturn false;\n}\n","import { DEFAULT_POINT_COLOR } from \"./constants\";\nimport type { TermPalette, WsiPointData, WsiViewState } from \"./types\";\n\nexport function clamp(value: number, min: number, max: number): number {\n\treturn Math.max(min, Math.min(max, value));\n}\n\nexport function calcScaleResolution(\n\timageMpp: number,\n\timageZoom: number,\n\tcurrentZoom: number,\n): number {\n\tconst mpp = Number(imageMpp);\n\tconst z0 = Number(imageZoom);\n\tconst z1 = Number(currentZoom);\n\tif (!Number.isFinite(mpp) || mpp <= 0) return 1;\n\tif (!Number.isFinite(z0) || !Number.isFinite(z1)) return mpp;\n\treturn Math.pow(2, z0 - z1) * mpp;\n}\n\nexport function calcScaleLength(\n\timageMpp: number,\n\timageZoom: number,\n\tcurrentZoom: number,\n): string {\n\tconst resolution = calcScaleResolution(imageMpp, imageZoom, currentZoom);\n\tlet length = 100 * resolution;\n\tif (Number(imageMpp)) {\n\t\tlet unit = \"μm\";\n\t\tif (length > 1000) {\n\t\t\tlength /= 1000;\n\t\t\tunit = \"mm\";\n\t\t}\n\t\treturn `${length.toPrecision(3)} ${unit}`;\n\t}\n\treturn `${Math.round(length * 1000) / 1000} pixels`;\n}\n\nexport function nowMs(): number {\n\tif (typeof performance !== \"undefined\" && typeof performance.now === \"function\") {\n\t\treturn performance.now();\n\t}\n\treturn Date.now();\n}\n\nexport function sanitizePointCount(pointData: WsiPointData): number {\n\tconst fillModesLength =\n\t\tpointData.fillModes instanceof Uint8Array\n\t\t\t? pointData.fillModes.length\n\t\t\t: Number.MAX_SAFE_INTEGER;\n\treturn Math.max(\n\t\t0,\n\t\tMath.min(\n\t\t\tMath.floor(pointData.count ?? 0),\n\t\t\tMath.floor((pointData.positions?.length ?? 0) / 2),\n\t\t\tpointData.paletteIndices?.length ?? 0,\n\t\t\tfillModesLength,\n\t\t),\n\t);\n}\n\nexport function isSameViewState(\n\ta: Partial<WsiViewState> | null | undefined,\n\tb: Partial<WsiViewState> | null | undefined,\n): boolean {\n\tif (!a && !b) return true;\n\tif (!a || !b) return false;\n\treturn (\n\t\tMath.abs((a.zoom ?? 0) - (b.zoom ?? 0)) < 1e-6 &&\n\t\tMath.abs((a.offsetX ?? 0) - (b.offsetX ?? 0)) < 1e-6 &&\n\t\tMath.abs((a.offsetY ?? 0) - (b.offsetY ?? 0)) < 1e-6 &&\n\t\tMath.abs((a.rotationDeg ?? 0) - (b.rotationDeg ?? 0)) < 1e-6\n\t);\n}\n\nexport function toBearerToken(value: string | null | undefined): string {\n\tconst trimmed = String(value ?? \"\").trim();\n\tif (!trimmed) return \"\";\n\tif (/^bearer\\s+/i.test(trimmed)) {\n\t\tconst token = trimmed.replace(/^bearer\\s+/i, \"\").trim();\n\t\treturn token ? `Bearer ${token}` : \"\";\n\t}\n\treturn `Bearer ${trimmed}`;\n}\n\nexport function hexToRgba(\n\thex: string | null | undefined,\n): [number, number, number, number] {\n\tconst value = String(hex ?? \"\").trim();\n\tconst match = value.match(/^#?([0-9a-fA-F]{6})$/);\n\tif (!match) return [...DEFAULT_POINT_COLOR];\n\n\tconst n = Number.parseInt(match[1], 16);\n\treturn [(n >> 16) & 255, (n >> 8) & 255, n & 255, 255];\n}\n\nexport function buildTermPalette(\n\tterms:\n\t\t| Array<{ termId?: string | null; termColor?: string | null }>\n\t\t| null\n\t\t| undefined,\n): TermPalette {\n\tconst palette: Array<[number, number, number, number]> = [\n\t\t[...DEFAULT_POINT_COLOR],\n\t];\n\tconst termToPaletteIndex = new Map<string, number>();\n\n\tfor (const term of terms ?? []) {\n\t\tconst termId = String(term?.termId ?? \"\");\n\t\tif (!termId || termToPaletteIndex.has(termId)) continue;\n\n\t\ttermToPaletteIndex.set(termId, palette.length);\n\t\tpalette.push(hexToRgba(term?.termColor));\n\t}\n\n\tconst colors = new Uint8Array(palette.length * 4);\n\tfor (let i = 0; i < palette.length; i += 1) {\n\t\tcolors[i * 4] = palette[i][0];\n\t\tcolors[i * 4 + 1] = palette[i][1];\n\t\tcolors[i * 4 + 2] = palette[i][2];\n\t\tcolors[i * 4 + 3] = palette[i][3];\n\t}\n\n\treturn { colors, termToPaletteIndex };\n}\n","import type {\n  RoiClipWorkerDataRequest,\n  RoiClipWorkerIndexRequest,\n  RoiClipWorkerIndexSuccess,\n  RoiClipWorkerRequest,\n  RoiClipWorkerResponse,\n  RoiClipWorkerSuccess,\n} from \"../wsi/point-clip-worker-protocol\";\nimport { pointInAnyPreparedPolygon, prepareRoiPolygons } from \"../wsi/roi-geometry\";\nimport { nowMs } from \"../wsi/utils\";\n\nfunction toErrorMessage(error: unknown): string {\n  if (error instanceof Error) return error.message;\n  try {\n    return String(error);\n  } catch {\n    return \"unknown worker error\";\n  }\n}\n\ninterface WorkerScope {\n  postMessage(message: unknown, transfer?: Transferable[]): void;\n  addEventListener(type: \"message\", listener: (event: MessageEvent<RoiClipWorkerRequest>) => void): void;\n}\n\nconst workerScope = self as unknown as WorkerScope;\n\nfunction handleDataRequest(msg: RoiClipWorkerDataRequest): RoiClipWorkerSuccess {\n  const start = nowMs();\n  const count = Math.max(0, Math.floor(msg.count));\n  const positions = new Float32Array(msg.positions);\n  const terms = new Uint16Array(msg.paletteIndices);\n  const fillModes = msg.fillModes ? new Uint8Array(msg.fillModes) : null;\n  const ids = msg.ids ? new Uint32Array(msg.ids) : null;\n\n  const maxCountByPositions = Math.floor(positions.length / 2);\n  const safeCount = Math.max(0, Math.min(count, maxCountByPositions, terms.length, fillModes ? fillModes.length : Number.MAX_SAFE_INTEGER));\n  const hasFillModes = fillModes instanceof Uint8Array && fillModes.length >= safeCount;\n  const hasIds = ids instanceof Uint32Array && ids.length >= safeCount;\n  const prepared = prepareRoiPolygons(msg.polygons ?? 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