oncoprintjs 6.0.7 → 6.1.1

package/dist/index.js

@@ -364,7 +364,7 @@ function fastParseInt16(x) {
     return ret;
 }
 function rgbString(color) {
-    return "rgb(" + color[0] + "," + color[1] + "," + color[2] + ")";
+    return "rgb(".concat(color[0], ",").concat(color[1], ",").concat(color[2], ")");
 }
 
 var string_type = typeof '';
@@ -1646,7 +1646,7 @@ var OncoprintModel = /** @class */ (function () {
                     var indexesAfterGap = model.column_indexes_after_a_gap.get();
                     // the indexes come AFTER a gap, so we need to include zero up front
                     // in order to get initial slice of data
-                    var groupStartIndexes = tslib.__spreadArrays([0], indexesAfterGap);
+                    var groupStartIndexes = tslib.__spreadArray([0], indexesAfterGap, true);
                     // using the group start indexes, slice the id data into corresponding groups
                     return groupStartIndexes.map(function (n, i) {
                         if (i === groupStartIndexes.length - 1) {
@@ -3804,7 +3804,7 @@ function rgbaToHex(rgba) {
     if (hexB.length === 1) {
         hexB = '0' + hexB;
     }
-    return "#" + hexR + hexG + hexB;
+    return "#".concat(hexR).concat(hexG).concat(hexB);
 }
 
 function rectangleToSVG(params, offset_x, offset_y) {
@@ -3970,7 +3970,7 @@ var svgfactory = {
             fillOpacity = fillSpecification.value[3];
         }
         else {
-            fill = "url(#" + fillSpecification.value + ")";
+            fill = "url(#".concat(fillSpecification.value, ")");
         }
         return makesvgelement('rect', {
             x: x,
@@ -4536,7 +4536,7 @@ var Line = /** @class */ (function (_super) {
 }(Shape));
 
 function getVertexShaderSource(columnsRightAfterGapsSize) {
-    return "precision highp float;\n            attribute float aPosVertex;\n            attribute float aColVertex;\n            attribute float aVertexOncoprintColumn;\n\n            uniform float gapSize;\n\n            uniform float columnsRightAfterGaps[" + columnsRightAfterGapsSize + "]; // sorted in ascending order\n\n            uniform float columnWidth;\n            uniform float scrollX;\n            uniform float zoomX;\n            uniform float scrollY;\n            uniform float zoomY;\n            uniform mat4 uMVMatrix;\n            uniform mat4 uPMatrix;\n            uniform float offsetY;\n            uniform float supersamplingRatio;\n            uniform float positionBitPackBase;\n            uniform float texSize;\n            varying float texCoord;\n            \n            \n\n            vec3 getUnpackedPositionVec3() {\n            \tfloat pos0 = floor(aPosVertex / (positionBitPackBase * positionBitPackBase));\n            \tfloat pos0Contr = pos0 * positionBitPackBase * positionBitPackBase;\n            \tfloat pos1 = floor((aPosVertex - pos0Contr)/positionBitPackBase);\n            \tfloat pos1Contr = pos1 * positionBitPackBase;\n            \tfloat pos2 = aPosVertex - pos0Contr - pos1Contr;\n            \treturn vec3(pos0, pos1, pos2);\n            }\n\n            float getGapOffset() {\n                // first do binary search to compute the number of gaps before this column, G(c)\n                // G(c) = the index in columnsRightAfterGaps of the first entry thats greater than c\n                 \n                int lower_incl = 0;\n                int upper_excl = " + columnsRightAfterGapsSize + ";\n                int numGaps = 0;\n                \n                for (int loopDummyVar = 0; loopDummyVar == 0; loopDummyVar += 0) {\n                    if (lower_incl >= upper_excl) {\n                        break;\n                    }\n                \n                    int middle = (lower_incl + upper_excl)/2;\n                    if (columnsRightAfterGaps[middle] < aVertexOncoprintColumn) {\n                        // G(c) > middle\n                        lower_incl = middle + 1;\n                    } else if (columnsRightAfterGaps[middle] == aVertexOncoprintColumn) {\n                        // G(c) = middle + 1\n                        numGaps = middle + 1;\n                        break;\n                    } else {\n                        // columnsRightAfterGaps[middle] > column, so G(c) <= middle\n                        if (middle == 0) {\n                            // 0 <= G(c) <= 0 -> G(c) = 0\n                            numGaps = 0;\n                            break;\n                        } else if (columnsRightAfterGaps[middle-1] < aVertexOncoprintColumn) {\n                            // G(c) = middle\n                            numGaps = middle;\n                            break;\n                        } else {\n                            // columnsRightAfterGaps[middle-1] >= column, so G(c) <= middle-1\n                            upper_excl = middle;\n                        }\n                    }\n                }\n \n                // multiply it by the gap size to get the total offset\n                return float(numGaps)*gapSize;\n            }\n\n            void main(void) {\n            \tgl_Position = vec4(getUnpackedPositionVec3(), 1.0);\n            \tgl_Position[0] += aVertexOncoprintColumn*columnWidth;\n            \tgl_Position *= vec4(zoomX, zoomY, 1.0, 1.0);\n\n            // gaps should not be affected by zoom:\n                gl_Position[0] += getGapOffset();\n\n            // offsetY is given zoomed:\n            \tgl_Position[1] += offsetY;\n\n            \tgl_Position -= vec4(scrollX, scrollY, 0.0, 0.0);\n            \tgl_Position[0] *= supersamplingRatio;\n            \tgl_Position[1] *= supersamplingRatio;\n            \tgl_Position = uPMatrix * uMVMatrix * gl_Position;\n\n            \ttexCoord = (aColVertex + 0.5) / texSize;\n            }";
+    return "precision highp float;\n            attribute float aPosVertex;\n            attribute float aColVertex;\n            attribute float aVertexOncoprintColumn;\n\n            uniform float gapSize;\n\n            uniform float columnsRightAfterGaps[".concat(columnsRightAfterGapsSize, "]; // sorted in ascending order\n\n            uniform float columnWidth;\n            uniform float scrollX;\n            uniform float zoomX;\n            uniform float scrollY;\n            uniform float zoomY;\n            uniform mat4 uMVMatrix;\n            uniform mat4 uPMatrix;\n            uniform float offsetY;\n            uniform float supersamplingRatio;\n            uniform float positionBitPackBase;\n            uniform float texSize;\n            varying float texCoord;\n            \n            \n\n            vec3 getUnpackedPositionVec3() {\n            \tfloat pos0 = floor(aPosVertex / (positionBitPackBase * positionBitPackBase));\n            \tfloat pos0Contr = pos0 * positionBitPackBase * positionBitPackBase;\n            \tfloat pos1 = floor((aPosVertex - pos0Contr)/positionBitPackBase);\n            \tfloat pos1Contr = pos1 * positionBitPackBase;\n            \tfloat pos2 = aPosVertex - pos0Contr - pos1Contr;\n            \treturn vec3(pos0, pos1, pos2);\n            }\n\n            float getGapOffset() {\n                // first do binary search to compute the number of gaps before this column, G(c)\n                // G(c) = the index in columnsRightAfterGaps of the first entry thats greater than c\n                 \n                int lower_incl = 0;\n                int upper_excl = ").concat(columnsRightAfterGapsSize, ";\n                int numGaps = 0;\n                \n                for (int loopDummyVar = 0; loopDummyVar == 0; loopDummyVar += 0) {\n                    if (lower_incl >= upper_excl) {\n                        break;\n                    }\n                \n                    int middle = (lower_incl + upper_excl)/2;\n                    if (columnsRightAfterGaps[middle] < aVertexOncoprintColumn) {\n                        // G(c) > middle\n                        lower_incl = middle + 1;\n                    } else if (columnsRightAfterGaps[middle] == aVertexOncoprintColumn) {\n                        // G(c) = middle + 1\n                        numGaps = middle + 1;\n                        break;\n                    } else {\n                        // columnsRightAfterGaps[middle] > column, so G(c) <= middle\n                        if (middle == 0) {\n                            // 0 <= G(c) <= 0 -> G(c) = 0\n                            numGaps = 0;\n                            break;\n                        } else if (columnsRightAfterGaps[middle-1] < aVertexOncoprintColumn) {\n                            // G(c) = middle\n                            numGaps = middle;\n                            break;\n                        } else {\n                            // columnsRightAfterGaps[middle-1] >= column, so G(c) <= middle-1\n                            upper_excl = middle;\n                        }\n                    }\n                }\n \n                // multiply it by the gap size to get the total offset\n                return float(numGaps)*gapSize;\n            }\n\n            void main(void) {\n            \tgl_Position = vec4(getUnpackedPositionVec3(), 1.0);\n            \tgl_Position[0] += aVertexOncoprintColumn*columnWidth;\n            \tgl_Position *= vec4(zoomX, zoomY, 1.0, 1.0);\n\n            // gaps should not be affected by zoom:\n                gl_Position[0] += getGapOffset();\n\n            // offsetY is given zoomed:\n            \tgl_Position[1] += offsetY;\n\n            \tgl_Position -= vec4(scrollX, scrollY, 0.0, 0.0);\n            \tgl_Position[0] *= supersamplingRatio;\n            \tgl_Position[1] *= supersamplingRatio;\n            \tgl_Position = uPMatrix * uMVMatrix * gl_Position;\n\n            \ttexCoord = (aColVertex + 0.5) / texSize;\n            }");
 }
 function getFragmentShaderSource() {
     return "precision mediump float;\n            varying float texCoord;\n            uniform sampler2D uSampler;\n            void main(void) {\n                gl_FragColor = texture2D(uSampler, vec2(texCoord, 0.5));\n            }";
@@ -4916,7 +4916,7 @@ var OncoprintWebGLCellView = /** @class */ (function () {
                         var clientRect = self.$overlay_canvas[0].getBoundingClientRect();
                         self.hoveredGap = overlappingGap;
                         tooltip.center = false;
-                        tooltip.show(250, clientRect.left + overlappingGap.origin_x, clientRect.top + overlappingGap.origin_y - 20, $__default["default"]("<span>" + overlappingGap.data.tooltipFormatter() + "</span>"), false);
+                        tooltip.show(250, clientRect.left + overlappingGap.origin_x, clientRect.top + overlappingGap.origin_y - 20, $__default["default"]("<span>".concat(overlappingGap.data.tooltipFormatter(), "</span>")), false);
                     }
                     if (!overlapping_data && !overlappingGap) {
                         tooltip.hideIfNotAlreadyGoingTo(150);
@@ -5780,7 +5780,7 @@ var OncoprintWebGLCellView = /** @class */ (function () {
                     shapeToVertexes(_shape, zindex, function (pos, col) {
                         pos = pos.map(Math.round);
                         position_1.push(packPos(pos));
-                        var col_hash = col[0] + "," + col[1] + "," + col[2] + "," + col[3];
+                        var col_hash = "".concat(col[0], ",").concat(col[1], ",").concat(col[2], ",").concat(col[3]);
                         var col_index = color_bank_index[col_hash];
                         if (typeof col_index === 'undefined') {
                             col_index = color_vertexes.length;
@@ -9538,7 +9538,7 @@ var OncoprintHeaderView = /** @class */ (function () {
                         'pointer-events': 'auto',
                     });
                     // add label
-                    $__default["default"]("<span>" + group.header.label.text + "</span>")
+                    $__default["default"]("<span>".concat(group.header.label.text, "</span>"))
                         .appendTo($headerDiv)
                         .css({
                         'margin-right': 10,
@@ -11495,7 +11495,7 @@ var OncoprintZoomSlider = /** @class */ (function () {
                 'min-height': params.btn_size,
                 'min-width': params.btn_size,
                 'background-color': '#ffffff',
-                border: "solid " + icon_div_border_size + "px black",
+                border: "solid ".concat(icon_div_border_size, "px black"),
                 'border-radius': '3px',
                 cursor: 'pointer',
             })
@@ -11516,7 +11516,7 @@ var OncoprintZoomSlider = /** @class */ (function () {
                 'min-height': params.btn_size,
                 'min-width': params.btn_size,
                 'background-color': '#ffffff',
-                border: "solid " + icon_div_border_size + "px black",
+                border: "solid ".concat(icon_div_border_size, "px black"),
                 'border-radius': '3px',
                 cursor: 'pointer',
             })
@@ -12004,7 +12004,7 @@ var OncoprintMinimapView = /** @class */ (function () {
             })
                 .addClass('oncoprint-zoomtofit-btn')
                 .appendTo($div);
-            $__default["default"]("<img src=\"" + img + "\" alt=\"Zoom to Fit Icon\" />")
+            $__default["default"]("<img src=\"".concat(img, "\" alt=\"Zoom to Fit Icon\" />"))
                 .css({
                 height: btn_height - 4,
                 width: btn_width - 4,
@@ -13434,7 +13434,7 @@ var Oncoprint = /** @class */ (function () {
             position: 'absolute',
             top: '0px',
             left: '0px',
-            'pointer-events': 'none',
+            'pointer-events': 'none', // since column label canvas is on top of cell overlay canvas, we need to make it not capture any mouse events
         })
             .addClass('noselect')
             .addClass('oncoprintjs__column_label_canvas');