oncoprintjs 6.0.5 → 6.0.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +1 -1
- package/dist/index.es.js +74 -20
- package/dist/index.es.js.map +1 -1
- package/dist/index.js +73 -19
- package/dist/index.js.map +1 -1
- package/dist/js/oncoprint.d.ts +2 -2
- package/dist/js/oncoprintmodel.d.ts +9 -3
- package/dist/js/oncoprinttrackoptionsview.d.ts +2 -2
- package/package.json +2 -2
- package/src/index.tsx +1 -1
- package/src/js/oncoprint.ts +8 -5
- package/src/js/oncoprintheaderview.ts +1 -0
- package/src/js/oncoprintminimapview.ts +1 -1
- package/src/js/oncoprintmodel.ts +38 -7
- package/src/js/oncoprinttrackoptionsview.ts +40 -16
- package/src/js/oncoprintwebglcellview.ts +10 -5
package/dist/index.js
CHANGED
|
@@ -803,6 +803,12 @@ function calculateTrackAndHeaderTops(model, zoomed) {
|
|
|
803
803
|
}
|
|
804
804
|
|
|
805
805
|
/* jshint browserify: true, asi: true */
|
|
806
|
+
exports.GAP_MODE_ENUM = void 0;
|
|
807
|
+
(function (GAP_MODE_ENUM) {
|
|
808
|
+
GAP_MODE_ENUM["SHOW_GAPS"] = "SHOW_GAPS";
|
|
809
|
+
GAP_MODE_ENUM["SHOW_GAPS_PERCENT"] = "SHOW_GAPS_PERCENT";
|
|
810
|
+
GAP_MODE_ENUM["HIDE_GAPS"] = "HIDE_GAPS";
|
|
811
|
+
})(exports.GAP_MODE_ENUM || (exports.GAP_MODE_ENUM = {}));
|
|
806
812
|
var UnionOfSets = /** @class */ (function () {
|
|
807
813
|
function UnionOfSets() {
|
|
808
814
|
// a set, to be passed in as argument, is an object where the values are truthy
|
|
@@ -1608,7 +1614,10 @@ var OncoprintModel = /** @class */ (function () {
|
|
|
1608
1614
|
var precomputedComparator = model.precomputed_comparator.get();
|
|
1609
1615
|
var trackIdsWithGaps = model
|
|
1610
1616
|
.getTracks()
|
|
1611
|
-
.filter(function (trackId) {
|
|
1617
|
+
.filter(function (trackId) {
|
|
1618
|
+
return model.getTrackShowGaps(trackId) !==
|
|
1619
|
+
exports.GAP_MODE_ENUM.HIDE_GAPS;
|
|
1620
|
+
});
|
|
1612
1621
|
var ids = model.visible_id_order.get();
|
|
1613
1622
|
for (var i = 1; i < ids.length; i++) {
|
|
1614
1623
|
for (var _i = 0, trackIdsWithGaps_1 = trackIdsWithGaps; _i < trackIdsWithGaps_1.length; _i++) {
|
|
@@ -2234,7 +2243,14 @@ var OncoprintModel = /** @class */ (function () {
|
|
|
2234
2243
|
writable: true,
|
|
2235
2244
|
value: function () {
|
|
2236
2245
|
if (this.showGaps()) {
|
|
2237
|
-
|
|
2246
|
+
switch (this.gapMode()) {
|
|
2247
|
+
case exports.GAP_MODE_ENUM.SHOW_GAPS:
|
|
2248
|
+
return this.getCellWidth(true);
|
|
2249
|
+
case exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT:
|
|
2250
|
+
return 50;
|
|
2251
|
+
default:
|
|
2252
|
+
return 50;
|
|
2253
|
+
}
|
|
2238
2254
|
}
|
|
2239
2255
|
else {
|
|
2240
2256
|
return this.getCellWidth(true);
|
|
@@ -2600,7 +2616,9 @@ var OncoprintModel = /** @class */ (function () {
|
|
|
2600
2616
|
this.track_sort_direction[track_id] = ifndef(params.init_sort_direction, 1);
|
|
2601
2617
|
this.track_can_show_gaps[track_id] = ifndef(params.track_can_show_gaps, false);
|
|
2602
2618
|
var trackShowGaps = ifndef(params.show_gaps_on_init, false);
|
|
2603
|
-
this.track_show_gaps[track_id] = trackShowGaps
|
|
2619
|
+
this.track_show_gaps[track_id] = trackShowGaps
|
|
2620
|
+
? exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT
|
|
2621
|
+
: exports.GAP_MODE_ENUM.HIDE_GAPS;
|
|
2604
2622
|
var trackNotSorted = this.track_sort_direction[track_id] === 0;
|
|
2605
2623
|
if (trackShowGaps && trackNotSorted) {
|
|
2606
2624
|
this.track_sort_direction[track_id] = 1;
|
|
@@ -3075,7 +3093,20 @@ var OncoprintModel = /** @class */ (function () {
|
|
|
3075
3093
|
configurable: true,
|
|
3076
3094
|
writable: true,
|
|
3077
3095
|
value: function () {
|
|
3078
|
-
return ___default["default"]
|
|
3096
|
+
return ___default["default"](this.track_show_gaps)
|
|
3097
|
+
.values()
|
|
3098
|
+
.some(function (t) { return t !== exports.GAP_MODE_ENUM.HIDE_GAPS; });
|
|
3099
|
+
}
|
|
3100
|
+
});
|
|
3101
|
+
Object.defineProperty(OncoprintModel.prototype, "gapMode", {
|
|
3102
|
+
enumerable: false,
|
|
3103
|
+
configurable: true,
|
|
3104
|
+
writable: true,
|
|
3105
|
+
value: function () {
|
|
3106
|
+
var mode = ___default["default"](this.track_show_gaps)
|
|
3107
|
+
.values()
|
|
3108
|
+
.find(function (g) { return g !== exports.GAP_MODE_ENUM.HIDE_GAPS; });
|
|
3109
|
+
return mode || exports.GAP_MODE_ENUM.HIDE_GAPS;
|
|
3079
3110
|
}
|
|
3080
3111
|
});
|
|
3081
3112
|
Object.defineProperty(OncoprintModel.prototype, "getOncoprintWidthNoColumnPaddingNoGaps", {
|
|
@@ -5287,14 +5318,16 @@ var OncoprintWebGLCellView = /** @class */ (function () {
|
|
|
5287
5318
|
var track_id = tracks[i];
|
|
5288
5319
|
var cell_top = model.getCellTops(track_id);
|
|
5289
5320
|
var cell_height = model.getCellHeight(track_id);
|
|
5290
|
-
if (model.showGaps()
|
|
5321
|
+
if (model.showGaps() &&
|
|
5322
|
+
model.gapMode() === exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT) {
|
|
5291
5323
|
var gaps = this_1.getGaps(model, track_id);
|
|
5292
5324
|
if (gaps) {
|
|
5293
5325
|
gaps.forEach(function (gap, i) {
|
|
5294
5326
|
var x = gapOffsets[i] - scroll_x - model.getGapSize();
|
|
5295
5327
|
var y = model.getZoomedTrackTops()[track_id] +
|
|
5296
5328
|
cell_height -
|
|
5297
|
-
scroll_y
|
|
5329
|
+
scroll_y -
|
|
5330
|
+
4;
|
|
5298
5331
|
_this.drawGapLabel(gap.labelFormatter(), x, y);
|
|
5299
5332
|
_this.gapTooltipTargets.push({
|
|
5300
5333
|
origin_x: x,
|
|
@@ -9562,6 +9595,7 @@ var OncoprintHeaderView = /** @class */ (function () {
|
|
|
9562
9595
|
.appendTo($headerDiv)
|
|
9563
9596
|
.attr({
|
|
9564
9597
|
src: img$1,
|
|
9598
|
+
alt: 'Menu Dots Icon',
|
|
9565
9599
|
width: MENU_DOTS_SIZE,
|
|
9566
9600
|
height: MENU_DOTS_SIZE,
|
|
9567
9601
|
})
|
|
@@ -9977,6 +10011,7 @@ var OncoprintTrackOptionsView = /** @class */ (function () {
|
|
|
9977
10011
|
.appendTo($div)
|
|
9978
10012
|
.attr({
|
|
9979
10013
|
src: img$1,
|
|
10014
|
+
alt: 'Menu Dots Icon',
|
|
9980
10015
|
width: this.img_size,
|
|
9981
10016
|
height: this.img_size,
|
|
9982
10017
|
})
|
|
@@ -10107,20 +10142,38 @@ var OncoprintTrackOptionsView = /** @class */ (function () {
|
|
|
10107
10142
|
}
|
|
10108
10143
|
if (model.getTrackCanShowGaps(track_id)) {
|
|
10109
10144
|
$dropdown.append(OncoprintTrackOptionsView.$makeDropdownSeparator());
|
|
10110
|
-
var $
|
|
10145
|
+
var $show_gaps_percent_opt = OncoprintTrackOptionsView.$makeDropdownOption(model.getTrackShowGaps(track_id) ===
|
|
10146
|
+
exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT
|
|
10147
|
+
? 'Hide gaps (w/%)'
|
|
10148
|
+
: 'Show Gaps (w/%)', model.getTrackShowGaps(track_id) ===
|
|
10149
|
+
exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT
|
|
10150
|
+
? 'bold'
|
|
10151
|
+
: 'normal', false, function (evt) {
|
|
10111
10152
|
evt.stopPropagation();
|
|
10112
10153
|
$show_gaps_opt_1.css('font-weight', 'bold');
|
|
10113
|
-
|
|
10114
|
-
|
|
10154
|
+
var mode = [
|
|
10155
|
+
exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT,
|
|
10156
|
+
].includes(model.getTrackShowGaps(track_id))
|
|
10157
|
+
? exports.GAP_MODE_ENUM.HIDE_GAPS
|
|
10158
|
+
: exports.GAP_MODE_ENUM.SHOW_GAPS_PERCENT;
|
|
10159
|
+
self.showGapsCallback(track_id, mode);
|
|
10115
10160
|
});
|
|
10116
|
-
var $
|
|
10161
|
+
var $show_gaps_opt_1 = OncoprintTrackOptionsView.$makeDropdownOption(model.getTrackShowGaps(track_id) === exports.GAP_MODE_ENUM.SHOW_GAPS
|
|
10162
|
+
? 'Hide gaps'
|
|
10163
|
+
: 'Show Gaps', model.getTrackShowGaps(track_id) === exports.GAP_MODE_ENUM.SHOW_GAPS
|
|
10164
|
+
? 'bold'
|
|
10165
|
+
: 'normal', false, function (evt) {
|
|
10117
10166
|
evt.stopPropagation();
|
|
10118
|
-
$show_gaps_opt_1.css('font-weight', '
|
|
10119
|
-
|
|
10120
|
-
|
|
10167
|
+
$show_gaps_opt_1.css('font-weight', 'bold');
|
|
10168
|
+
var mode = [
|
|
10169
|
+
exports.GAP_MODE_ENUM.SHOW_GAPS,
|
|
10170
|
+
].includes(model.getTrackShowGaps(track_id))
|
|
10171
|
+
? exports.GAP_MODE_ENUM.HIDE_GAPS
|
|
10172
|
+
: exports.GAP_MODE_ENUM.SHOW_GAPS;
|
|
10173
|
+
self.showGapsCallback(track_id, mode);
|
|
10121
10174
|
});
|
|
10122
10175
|
$dropdown.append($show_gaps_opt_1);
|
|
10123
|
-
$dropdown.append($
|
|
10176
|
+
$dropdown.append($show_gaps_percent_opt);
|
|
10124
10177
|
}
|
|
10125
10178
|
// Add custom options
|
|
10126
10179
|
var custom_options = model.getTrackCustomOptions(track_id);
|
|
@@ -11951,7 +12004,7 @@ var OncoprintMinimapView = /** @class */ (function () {
|
|
|
11951
12004
|
})
|
|
11952
12005
|
.addClass('oncoprint-zoomtofit-btn')
|
|
11953
12006
|
.appendTo($div);
|
|
11954
|
-
$__default["default"]("<img src=\"" + img + "\" />")
|
|
12007
|
+
$__default["default"]("<img src=\"" + img + "\" alt=\"Zoom to Fit Icon\" />")
|
|
11955
12008
|
.css({
|
|
11956
12009
|
height: btn_height - 4,
|
|
11957
12010
|
width: btn_width - 4,
|
|
@@ -14386,7 +14439,7 @@ var Oncoprint = /** @class */ (function () {
|
|
|
14386
14439
|
}
|
|
14387
14440
|
if (this.model.getTrackSortDirection(track_id) === 0) {
|
|
14388
14441
|
if (this.model.getTrackShowGaps(track_id)) {
|
|
14389
|
-
this.setTrackShowGaps(track_id,
|
|
14442
|
+
this.setTrackShowGaps(track_id, exports.GAP_MODE_ENUM.HIDE_GAPS);
|
|
14390
14443
|
}
|
|
14391
14444
|
}
|
|
14392
14445
|
}
|
|
@@ -14456,9 +14509,10 @@ var Oncoprint = /** @class */ (function () {
|
|
|
14456
14509
|
enumerable: false,
|
|
14457
14510
|
configurable: true,
|
|
14458
14511
|
writable: true,
|
|
14459
|
-
value: function (track_id,
|
|
14460
|
-
this.model.setTrackShowGaps(track_id,
|
|
14461
|
-
if (this.model.getTrackSortDirection(track_id) === 0 &&
|
|
14512
|
+
value: function (track_id, gap_mode) {
|
|
14513
|
+
this.model.setTrackShowGaps(track_id, gap_mode);
|
|
14514
|
+
if (this.model.getTrackSortDirection(track_id) === 0 &&
|
|
14515
|
+
gap_mode !== exports.GAP_MODE_ENUM.HIDE_GAPS) {
|
|
14462
14516
|
this.setTrackSortDirection(track_id, 1);
|
|
14463
14517
|
}
|
|
14464
14518
|
this.track_options_view.setTrackShowGaps(this.model, this.getCellViewHeight);
|