oncoprintjs 5.0.2 → 6.0.0

package/dist/js/oncoprintlabelview.d.ts

@@ -1,78 +1,79 @@
-/// <reference types="jquery" />
-import OncoprintModel, { TrackId } from "./oncoprintmodel";
-import OncoprintToolTip from "./oncoprinttooltip";
-export default class OncoprintLabelView {
-    private $canvas;
-    private model;
-    private tooltip;
-    private supersampling_ratio;
-    private base_font_size;
-    private track_tops;
-    private cell_tops;
-    private cell_tops_view_space;
-    private cell_tops_this_space;
-    private cell_heights;
-    private cell_heights_view_space;
-    private cell_heights_this_space;
-    private label_middles_view_space;
-    private label_middles_this_space;
-    private label_left_padding;
-    private labels;
-    private sublabels;
-    private label_colors;
-    private label_circle_colors;
-    private label_font_weight;
-    private html_labels;
-    private track_link_urls;
-    private track_descriptions;
-    private minimum_track_height;
-    private maximum_label_width;
-    private tracks;
-    private show_sublabels;
-    private rendering_suppressed;
-    private highlighted_track_label_only;
-    private drag_callback;
-    private dragged_label_track_id;
-    private drag_mouse_y;
-    private scroll_y;
-    private ctx;
-    constructor($canvas: JQuery<HTMLCanvasElement>, model: OncoprintModel, tooltip: OncoprintToolTip);
-    private circleRadius;
-    private renderedLabelWidth;
-    private updateFromModel;
-    private setUpContext;
-    private resizeAndClear;
-    private isNecessaryToShortenLabel;
-    private shortenLabelIfNecessary;
-    private static formatTooltipHeader;
-    private renderAllLabels;
-    private isMouseOnLabel;
-    private getLabelAboveMouseSpace;
-    private getLabelBelowMouseSpace;
-    private startDragging;
-    private stopDragging;
-    private getMaximumLabelLength;
-    getWidth(): number;
-    getFontSize(no_supersampling_adjustment?: boolean): number;
-    setDragCallback(callback: OncoprintLabelView["drag_callback"]): void;
-    removeTrack(model: OncoprintModel, getCellViewHeight: () => number): void;
-    moveTrack(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setTrackGroupOrder(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setShowTrackLabels(model: OncoprintModel, getCellViewHeight: () => number): void;
-    addTracks(model: OncoprintModel, track_ids: TrackId[], getCellViewHeight: () => number): void;
-    setShowTrackSublabels(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setScroll(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setHorzScroll(model: OncoprintModel): void;
-    setViewport(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setVertScroll(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setVertZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
-    highlightTrackLabelOnly(track_id: TrackId, model: OncoprintModel): void;
-    setHighlightedTracks(model: OncoprintModel): void;
-    setTrackMovable(model: OncoprintModel): void;
-    setTrackGroupHeader(model: OncoprintModel, getCellViewHeight: () => number): void;
-    sort(model: OncoprintModel, getCellViewHeight: () => number): void;
-    suppressRendering(): void;
-    releaseRendering(model: OncoprintModel, getCellViewHeight: () => number): void;
-    toSVGGroup(model: OncoprintModel, full_labels: boolean, offset_x: number, offset_y: number): SVGGElement;
-}
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import OncoprintModel, { TrackId } from './oncoprintmodel';
+import OncoprintToolTip from './oncoprinttooltip';
+export default class OncoprintLabelView {
+    private $canvas;
+    private model;
+    private tooltip;
+    private supersampling_ratio;
+    private base_font_size;
+    private track_tops;
+    private cell_tops;
+    private cell_tops_view_space;
+    private cell_tops_this_space;
+    private cell_heights;
+    private cell_heights_view_space;
+    private cell_heights_this_space;
+    private label_middles_view_space;
+    private label_middles_this_space;
+    private label_left_padding;
+    private labels;
+    private sublabels;
+    private label_colors;
+    private label_circle_colors;
+    private label_font_weight;
+    private html_labels;
+    private track_link_urls;
+    private track_descriptions;
+    private minimum_track_height;
+    private maximum_label_width;
+    private tracks;
+    private show_sublabels;
+    private rendering_suppressed;
+    private highlighted_track_label_only;
+    private drag_callback;
+    private dragged_label_track_id;
+    private drag_mouse_y;
+    private scroll_y;
+    private ctx;
+    constructor($canvas: JQuery<HTMLCanvasElement>, model: OncoprintModel, tooltip: OncoprintToolTip);
+    private circleRadius;
+    private renderedLabelWidth;
+    private updateFromModel;
+    private setUpContext;
+    private resizeAndClear;
+    private isNecessaryToShortenLabel;
+    private shortenLabelIfNecessary;
+    private static formatTooltipHeader;
+    private renderAllLabels;
+    private isMouseOnLabel;
+    private getLabelAboveMouseSpace;
+    private getLabelBelowMouseSpace;
+    private startDragging;
+    private stopDragging;
+    private getMaximumLabelLength;
+    getWidth(): number;
+    getFontSize(no_supersampling_adjustment?: boolean): number;
+    setDragCallback(callback: OncoprintLabelView['drag_callback']): void;
+    removeTrack(model: OncoprintModel, getCellViewHeight: () => number): void;
+    moveTrack(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setTrackGroupOrder(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setShowTrackLabels(model: OncoprintModel, getCellViewHeight: () => number): void;
+    addTracks(model: OncoprintModel, track_ids: TrackId[], getCellViewHeight: () => number): void;
+    setShowTrackSublabels(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setScroll(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setHorzScroll(model: OncoprintModel): void;
+    setViewport(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setVertScroll(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setVertZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
+    highlightTrackLabelOnly(track_id: TrackId, model: OncoprintModel): void;
+    setHighlightedTracks(model: OncoprintModel): void;
+    setTrackMovable(model: OncoprintModel): void;
+    setTrackGroupHeader(model: OncoprintModel, getCellViewHeight: () => number): void;
+    sort(model: OncoprintModel, getCellViewHeight: () => number): void;
+    suppressRendering(): void;
+    releaseRendering(model: OncoprintModel, getCellViewHeight: () => number): void;
+    toSVGGroup(model: OncoprintModel, full_labels: boolean, offset_x: number, offset_y: number): SVGGElement;
+}

package/dist/js/oncoprintlegendrenderer.d.ts

@@ -1,31 +1,32 @@
-/// <reference types="jquery" />
-import OncoprintModel from "./oncoprintmodel";
-export default class OncoprintLegendView {
-    private $div;
-    private base_width;
-    private base_height;
-    private $svg;
-    private rendering_suppressed;
-    private width;
-    private rule_set_label_config;
-    private rule_label_config;
-    private padding_after_rule_set_label;
-    private padding_between_rules;
-    private padding_between_rule_set_rows;
-    constructor($div: JQuery, base_width: number, base_height: number);
-    private renderLegend;
-    private ruleToSVGGroup;
-    setWidth(w: number, model: OncoprintModel): void;
-    removeTrack(model: OncoprintModel): void;
-    addTracks(model: OncoprintModel): void;
-    setTrackData(model: OncoprintModel): void;
-    setTrackImportantIds(model: OncoprintModel): void;
-    shareRuleSet(model: OncoprintModel): void;
-    setRuleSet(model: OncoprintModel): void;
-    setTrackGroupLegendOrder(model: OncoprintModel): void;
-    hideTrackLegends(model: OncoprintModel): void;
-    showTrackLegends(model: OncoprintModel): void;
-    suppressRendering(): void;
-    releaseRendering(model: OncoprintModel): void;
-    toSVGGroup(model: OncoprintModel, offset_x: number, offset_y: number): SVGGElement;
-}
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import OncoprintModel from './oncoprintmodel';
+export default class OncoprintLegendView {
+    private $div;
+    private base_width;
+    private base_height;
+    private $svg;
+    private rendering_suppressed;
+    private width;
+    private rule_set_label_config;
+    private rule_label_config;
+    private padding_after_rule_set_label;
+    private padding_between_rules;
+    private padding_between_rule_set_rows;
+    constructor($div: JQuery, base_width: number, base_height: number);
+    private renderLegend;
+    private ruleToSVGGroup;
+    setWidth(w: number, model: OncoprintModel): void;
+    removeTrack(model: OncoprintModel): void;
+    addTracks(model: OncoprintModel): void;
+    setTrackData(model: OncoprintModel): void;
+    setTrackImportantIds(model: OncoprintModel): void;
+    shareRuleSet(model: OncoprintModel): void;
+    setRuleSet(model: OncoprintModel): void;
+    setTrackGroupLegendOrder(model: OncoprintModel): void;
+    hideTrackLegends(model: OncoprintModel): void;
+    showTrackLegends(model: OncoprintModel): void;
+    suppressRendering(): void;
+    releaseRendering(model: OncoprintModel): void;
+    toSVGGroup(model: OncoprintModel, offset_x: number, offset_y: number): SVGGElement;
+}

package/dist/js/oncoprintminimapview.d.ts

@@ -1,66 +1,69 @@
-/// <reference types="jquery" />
-import OncoprintModel, { ColumnIndex } from "./oncoprintmodel";
-import OncoprintWebGLCellView from "./oncoprintwebglcellview";
-export declare type MinimapViewportSpec = {
-    left_col: ColumnIndex;
-    right_col: ColumnIndex;
-    scroll_y_proportion: number;
-    zoom_y: number;
-};
-export default class OncoprintMinimapView {
-    private $div;
-    private $canvas;
-    private $overlay_canvas;
-    private handleContextLost;
-    private layout_numbers;
-    private current_rect;
-    private $window_bar;
-    private $close_btn;
-    private horizontal_zoom;
-    private vertical_zoom;
-    private ctx;
-    private overlay_ctx;
-    private pMatrix;
-    private mvMatrix;
-    private shader_program;
-    private resize_hover;
-    private rendering_suppressed;
-    private visible;
-    constructor($div: JQuery, $canvas: JQuery<HTMLCanvasElement>, $overlay_canvas: JQuery<HTMLCanvasElement>, model: OncoprintModel, cell_view: OncoprintWebGLCellView, width: number, height: number, drag_callback: (x: number, y: number) => void, viewport_callback: (vp: MinimapViewportSpec) => void, horz_zoom_callback: (z: number) => void, vert_zoom_callback: (z: number) => void, zoom_to_fit_callback: () => void, close_callback: () => void);
-    private colToLeft;
-    private readonly shouldRender;
-    private getNewCanvas;
-    private getWebGLCanvasContext;
-    private ensureWebGLContext;
-    private createShaderProgram;
-    private createShader;
-    private getWebGLContextAndSetUpMatrices;
-    private setUpShaders;
-    private getTrackBuffers;
-    private drawOncoprint;
-    private getZoom;
-    private drawOverlayRect;
-    private drawOncoprintAndOverlayRect;
-    moveTrack(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    addTracks(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    removeTrack(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setHorzZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setVertZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setHorzScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setVertScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setViewport(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    sort(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setTrackData(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    shareRuleSet(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setRuleSet(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setIdOrder(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setTrackGroupHeader(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    suppressRendering(): void;
-    releaseRendering(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    hideIds(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-    setMinimapVisible(visible: boolean, model?: OncoprintModel, cell_view?: OncoprintWebGLCellView): void;
-    setWindowPosition(x: number, y: number): void;
-    setWidth(w: number, model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
-}
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import OncoprintModel, { ColumnIndex } from './oncoprintmodel';
+import OncoprintWebGLCellView from './oncoprintwebglcellview';
+export declare type MinimapViewportSpec = {
+    left_col: ColumnIndex;
+    right_col: ColumnIndex;
+    scroll_y_proportion: number;
+    zoom_y: number;
+};
+export default class OncoprintMinimapView {
+    private $div;
+    private $canvas;
+    private $overlay_canvas;
+    private handleContextLost;
+    private layout_numbers;
+    private current_rect;
+    private $window_bar;
+    private $close_btn;
+    private horizontal_zoom;
+    private vertical_zoom;
+    private ctx;
+    private ext;
+    private overlay_ctx;
+    private pMatrix;
+    private mvMatrix;
+    private shader_program;
+    private resize_hover;
+    private rendering_suppressed;
+    private visible;
+    constructor($div: JQuery, $canvas: JQuery<HTMLCanvasElement>, $overlay_canvas: JQuery<HTMLCanvasElement>, model: OncoprintModel, cell_view: OncoprintWebGLCellView, width: number, height: number, drag_callback: (x: number, y: number) => void, viewport_callback: (vp: MinimapViewportSpec) => void, horz_zoom_callback: (z: number) => void, vert_zoom_callback: (z: number) => void, zoom_to_fit_callback: () => void, close_callback: () => void);
+    private colToLeft;
+    private get shouldRender();
+    private getNewCanvas;
+    private getWebGLCanvasContext;
+    private ensureWebGLContext;
+    private createShaderProgram;
+    private createShader;
+    private getWebGLContextAndSetUpMatrices;
+    private setUpShaders;
+    private getTrackBuffers;
+    private getSimpleCountBuffer;
+    private drawOncoprint;
+    private getZoom;
+    private drawOverlayRect;
+    private drawOncoprintAndOverlayRect;
+    moveTrack(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    addTracks(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    removeTrack(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setHorzZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setVertZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setZoom(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setHorzScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setVertScroll(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setViewport(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    sort(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setTrackData(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    shareRuleSet(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setRuleSet(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setIdOrder(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setTrackGroupHeader(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    suppressRendering(): void;
+    releaseRendering(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    hideIds(model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+    setMinimapVisible(visible: boolean, model?: OncoprintModel, cell_view?: OncoprintWebGLCellView): void;
+    setWindowPosition(x: number, y: number): void;
+    setWidth(w: number, model: OncoprintModel, cell_view: OncoprintWebGLCellView): void;
+}