omnibiofex 2.5.0 ā†’ 2.5.1

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Files changed (2) hide show
  1. package/bin/obx +138 -24
  2. package/package.json +1 -1
package/bin/obx CHANGED
@@ -1,46 +1,160 @@
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  #!/usr/bin/env node
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+
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  const { program } = require('commander');
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  const chalk = require('chalk');
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  const figlet = require('figlet');
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- const { login, logout } = require('../src/auth');
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- const { missionCreate, missionStatus, missionResults, missionList } = require('../src/commands/mission');
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- const { literatureReview, gaps, hypothesis } = require('../src/commands/research');
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- const { credits, usage, buy } = require('../src/commands/account');
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- const { debug } = require('../src/commands/debug');
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+ const path = require('path');
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+ const fs = require('fs');
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+
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+ // šŸ”„ FIX: Read version dynamically from package.json
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+ const packageJson = JSON.parse(
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+ fs.readFileSync(path.join(__dirname, '../package.json'), 'utf8')
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+ );
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+ const VERSION = packageJson.version;
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+ // Display banner
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+ console.log(
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+ chalk.hex('#F24E1E')(
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+ figlet.textSync('OmniBioFex X', { horizontalLayout: 'full' })
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+ )
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+ );
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+ console.log(chalk.gray(`The Autonomous Research Terminal v${VERSION}\n`));
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- console.log(chalk.hex('#F24E1E')(figlet.textSync('OmniBioFex X', { horizontalLayout: 'full' })));
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- console.log(chalk.gray('The Autonomous Research Terminal v2.4.1\n'));
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+ // Global error handler
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+ process.on('unhandledRejection', (error) => {
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+ console.error(chalk.red('\nāœ— Error:'), error.message);
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+ process.exit(1);
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+ });
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+ // šŸ”„ FIX: Register --version flag properly
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  program
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- .command('debug')
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- .description('Debug authentication and token status')
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- .action(debug);
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+ .name('obx')
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+ .version(VERSION, '-v, --version', 'Show CLI version')
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+ .description('OmniBioFex X - The Autonomous Research Terminal');
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+
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+ // ==================== AUTHENTICATION ====================
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+ const { login, logout } = require('../src/auth');
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+
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  program
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- .command('login').description('Authenticate').action(login);
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+ .command('login')
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+ .description('Authenticate with your OmniBioFex X account')
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+ .action(login);
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+
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  program
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- .command('logout').description('Sign out').action(logout);
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+ .command('logout')
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+ .description('Sign out of your account')
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+ .action(logout);
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+
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+ // ==================== MISSION COMMANDS ====================
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+ const { missionCreate, missionStatus, missionResults, missionList } = require('../src/commands/mission');
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+
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  program
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- .command('mission <action>').description('create | status | results | list')
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+ .command('mission')
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+ .description('Manage research missions')
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+ .argument('<action>', 'create | status | results | list')
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  .action(async (action) => {
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- const actions = { create: missionCreate, status: missionStatus, results: missionResults, list: missionList };
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- if (actions[action]) await actions[action]();
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- else console.error(chalk.red('Unknown action'));
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+ switch (action) {
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+ case 'create':
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+ await missionCreate();
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+ break;
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+ case 'status':
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+ await missionStatus();
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+ break;
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+ case 'results':
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+ await missionResults();
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+ break;
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+ case 'list':
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+ await missionList();
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+ break;
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+ default:
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+ console.error(chalk.red('Unknown action. Use: create, status, results, or list'));
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+ }
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  });
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+
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+ // ==================== RESEARCH COMMANDS ====================
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+ const { literatureReview, paper, compare, gaps, hypothesis } = require('../src/commands/research');
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+
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  program
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- .command('literature <topic>').description('Generate literature review').action(literatureReview);
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+ .command('literature')
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+ .description('Generate literature review')
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+ .argument('<topic>', 'Research topic')
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+ .action(literatureReview);
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+
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  program
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- .command('gaps <topic>').description('Discover research gaps').action(gaps);
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+ .command('paper')
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+ .description('Analyze a research paper')
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+ .argument('<file>', 'PDF file path')
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+ .action(paper);
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+
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  program
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- .command('hypothesis <topic>').description('Generate hypotheses').action(hypothesis);
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+ .command('compare')
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+ .description('Compare multiple papers')
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+ .arguments('<files...>')
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+ .action(compare);
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+
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  program
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- .command('credits').description('Check RCC balance').action(credits);
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+ .command('gaps')
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+ .description('Discover research gaps')
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+ .argument('<topic>', 'Research topic')
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+ .action(gaps);
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+
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  program
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- .command('usage').description('View usage').action(usage);
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+ .command('hypothesis')
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+ .description('Generate research hypotheses')
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+ .argument('<topic>', 'Research topic')
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+ .action(hypothesis);
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+
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+ // ==================== DATA COMMANDS ====================
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+ const { dataset, code, medical } = require('../src/commands/data');
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+
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+ program
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+ .command('dataset')
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+ .description('Analyze dataset')
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+ .argument('<file>', 'CSV/Excel file path')
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+ .action(dataset);
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+
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+ program
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+ .command('code')
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+ .description('Review code repository')
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+ .argument('[directory]', 'Directory path', '.')
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+ .action(code);
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+
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  program
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- .command('buy').description('Purchase credits').action(buy);
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+ .command('medical')
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+ .description('Analyze medical imaging')
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+ .argument('<file>', 'DICOM/image file path')
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+ .action(medical);
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+
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+ // ==================== ACCOUNT COMMANDS ====================
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+ const { credits, usage, buy } = require('../src/commands/account');
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+
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+ program
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+ .command('credits')
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+ .description('Check your RCC balance')
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+ .action(credits);
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+
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  program
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- .command('version').description('Show version').action(() => console.log(chalk.hex('#F24E1E')('OmniBioFex X v2.4.1')));
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+ .command('usage')
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+ .description('View usage statistics')
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+ .action(usage);
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+ program
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+ .command('buy')
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+ .description('Open browser to purchase credits')
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+ .action(buy);
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+
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+ // ==================== DEBUG COMMAND ====================
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+ const { debug } = require('../src/commands/debug');
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+
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+ program
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+ .command('debug')
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+ .description('Debug authentication and token status')
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+ .action(debug);
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+
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+ // Parse arguments
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  program.parse(process.argv);
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- if (!process.argv.slice(2).length) program.outputHelp();
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+
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+ // Show help if no command provided
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+ if (!process.argv.slice(2).length) {
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+ program.outputHelp();
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+ }
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "omnibiofex",
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- "version": "2.5.0",
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+ "version": "2.5.1",
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  "description": "OmniBioFex X - The Autonomous Research Terminal for AI-powered research missions",
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  "main": "bin/obx",
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  "bin": {