omezarr-tilesource 0.5.0 → 0.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (4) hide show
  1. package/README.md +188 -58
  2. package/dist/omezarr-tilesource.d.ts +521 -24
  3. package/dist/omezarr-tilesource.js +229 -104
  4. package/package.json +1 -1
package/dist/omezarr-tilesource.js CHANGED
@@ -2,43 +2,174 @@ import e from "@zarrita/storage/zip";
2
2
  import { NgffImage as t, getSlices as n, renderChunks as r } from "ome-zarr.js";
3
3
  import i from "openseadragon";
4
4
  import * as a from "zarrita";
5
+ //#region src/utils.ts
6
+ var o = /* @__PURE__ */ new WeakMap();
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+ function s(e) {
8
+ if (e instanceof Blob) {
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+ let t = o.get(e);
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+ return t === void 0 && (t = URL.createObjectURL(e), o.set(e, t)), new URL(t);
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+ }
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+ return new URL(e, globalThis.document?.baseURI);
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+ }
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+ function c(e) {
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+ try {
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+ return s(e).pathname.endsWith(".ozx");
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+ } catch {
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+ return e.toString().endsWith(".ozx");
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+ }
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+ }
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+ function l(e) {
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+ let { data: t } = e;
23
+ return t instanceof Int8Array ? [-128, 127] : t instanceof Uint8Array ? [0, 255] : t instanceof Int16Array ? [-32768, 32767] : t instanceof Uint16Array ? [0, 65535] : t instanceof Int32Array ? [-2147483648, 2147483647] : t instanceof Uint32Array ? [0, 4294967295] : t instanceof BigInt64Array ? [-(2 ** 63), 2 ** 63 - 1] : t instanceof BigUint64Array ? [0, 2 ** 64 - 1] : [0, 1];
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+ }
25
+ function u(e) {
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+ let t = 2166136261;
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+ for (let n = 0; n < e.length; n++) t = Math.imul(t ^ e.charCodeAt(n), 16777619);
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+ return t >>> 0;
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+ }
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+ //#endregion
5
31
  //#region src/OMEZarrTileSource.ts
6
- var o = class o extends i.TileSource {
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- zip;
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- c;
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- z;
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- t;
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- dataType;
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- autoBoost;
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+ var d = class o extends i.TileSource {
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+ blob;
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+ zip = !1;
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+ _t;
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+ _z;
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+ _c;
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+ _renderSettings;
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+ _renderSettingsHash;
13
40
  width = 10;
14
41
  height = 10;
15
- _image;
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- _arrays;
42
+ _loaded;
17
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  _readyPromise = new Promise((e, t) => {
18
44
  this.addOnceHandler("ready", () => e(this)), this.addOnceHandler("open-failed", (e) => t(Error(e.message)));
19
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  });
20
46
  static {
21
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  o._learnConverters(i);
22
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  }
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- static open(e, t) {
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- return new o(e, t).whenReady();
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+ static enable(e = i) {
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+ Object.assign(e, { OMEZarrTileSource: o }), o._learnConverters(e);
51
+ }
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+ static async loadOMEZarr(n, r, i) {
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+ let { signal: a } = i ?? {};
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+ a?.throwIfAborted();
55
+ let o;
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+ if (n instanceof Blob) {
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+ if (r === !1) throw Error("only zipped OME-Zarr files can be loaded from a Blob");
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+ o = e.fromBlob(n);
59
+ } else {
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+ let t = s(n);
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+ o = r ?? c(t) ? e.fromUrl(t) : n.toString();
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+ }
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+ let l = await t.load(o, { signal: a });
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+ return {
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+ image: l,
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+ arrays: await Promise.all(l.paths.map((e) => l.openArray(e, { signal: a })))
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+ };
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+ }
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+ static async open(e, t, n) {
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+ let { signal: r } = n ?? {};
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+ return r?.throwIfAborted(), t ??= typeof e == "string" || e instanceof URL || e instanceof Blob ? await o.loadOMEZarr(e, void 0, { signal: r }) : await o.loadOMEZarr(e.url, e.zip, { signal: r }), new o(e, t).whenReady();
72
+ }
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+ static render(e) {
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+ let { chunks: t, ranges: n, colors: i, lutsOrColorMaps: a, inverteds: o, autoBoost: s } = e, c = t[0].shape[1], l = t[0].shape[0], u = document.createElement("canvas");
75
+ u.width = c, u.height = l;
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+ let d = u.getContext("2d");
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+ if (d === null) throw Error("failed to get 2D canvas context");
78
+ let f = r(t, n, i, a.map((e) => Array.isArray(e) ? [...e] : e), o, s), p = new ImageData(f, c, l);
79
+ return d.putImageData(p, 0, 0), d;
25
80
  }
26
81
  constructor(e, t) {
27
- typeof e == "string" ? (super(e), this.url = e, this.dataType = "context2d") : (super(e.url), this.url = e.url, this.zip = e.zip, this.c = e.c, this.z = e.z, this.t = e.t, this.dataType = e.dataType ?? "context2d", this.autoBoost = e.autoBoost), this._image = t, this._readyPromise.catch(() => {});
82
+ let n = typeof e == "string" || e instanceof URL || e instanceof Blob ? { url: e } : e, r = s(n.url);
83
+ if (n.url instanceof Blob && n.zip === !1) throw Error("zip must not be false for a Blob (only zipped OME-Zarr files can be loaded from a Blob)");
84
+ let i;
85
+ if (n.c !== void 0) if (Array.isArray(n.c)) {
86
+ if (n.c.length === 0) throw Error("c array must be non-empty");
87
+ i = n.c;
88
+ } else i = [n.c];
89
+ let a = o._normalize(n, "range", (e) => Array.isArray(e) && e.length === 2 && e.every((e) => typeof e == "number"), i), l = o._normalize(n, "color", (e) => Array.isArray(e) && e.length === 3 && e.every((e) => typeof e == "number"), i), d = o._normalize(n, "lutOrColorMap", (e) => e instanceof Map || Array.isArray(e) && e.length > 0 && e.every((e) => Array.isArray(e) && (e.length === 3 || e.length === 4) && e.every((e) => typeof e == "number")), i), f = o._normalize(n, "inverted", (e) => typeof e == "boolean", i);
90
+ super(r.toString()), this.url = r.toString(), this.blob = n.url instanceof Blob ? n.url : void 0, this.zip = n.zip ?? (this.blob !== void 0 || c(r)), this._t = n.t, this._z = n.z, this._c = i, this._renderSettings = {
91
+ ranges: a,
92
+ colors: l,
93
+ lutsOrColorMaps: d,
94
+ inverteds: f,
95
+ autoBoost: n.autoBoost ?? !1
96
+ }, this._renderSettingsHash = u(JSON.stringify({
97
+ ...this._renderSettings,
98
+ lutsOrColorMaps: d?.map((e) => e instanceof Map ? [...e].sort(([e], [t]) => e - t) : e)
99
+ })), this._loaded = t, this._readyPromise.catch(() => {});
100
+ }
101
+ get loaded() {
102
+ if (this._loaded === void 0) throw Error("tile source not ready");
103
+ return this._loaded;
104
+ }
105
+ get t() {
106
+ return this._t === void 0 ? this._loaded?.image.omero?.rdefs?.defaultT : this._t;
107
+ }
108
+ get z() {
109
+ return this._z === void 0 ? this._loaded?.image.omero?.rdefs?.defaultZ : this._z;
110
+ }
111
+ get cs() {
112
+ return this._c === void 0 ? this._loaded?.image.omero?.channels?.flatMap((e, t) => e.active === !1 ? [] : [t]) : this._c;
113
+ }
114
+ get channels() {
115
+ return this._c === void 0 ? this._loaded?.image.omero?.channels?.filter((e) => e.active !== !1) : this._c.map((e) => this._loaded?.image.omero?.channels?.[e]);
116
+ }
117
+ get ranges() {
118
+ let e = this.channels, t = (e) => {
119
+ if (e?.window.start !== void 0 && e.window.end !== void 0) return [e.window.start, e.window.end];
120
+ };
121
+ return o._repeat(this._renderSettings.ranges, e)?.map((n, r) => n ?? t(e?.[r]));
122
+ }
123
+ get colors() {
124
+ let e = this.channels, t = (e) => {
125
+ if (e === void 0) return;
126
+ let t = /^#?([0-9A-Fa-f]{6})$/.exec(e.color)?.[1];
127
+ if (t !== void 0) return [
128
+ parseInt(t.slice(0, 2), 16),
129
+ parseInt(t.slice(2, 4), 16),
130
+ parseInt(t.slice(4, 6), 16)
131
+ ];
132
+ };
133
+ return o._repeat(this._renderSettings.colors, e)?.map((n, r) => n ?? t(e?.[r]));
28
134
  }
29
- get image() {
30
- if (this._image === void 0) throw Error("tile source not ready");
31
- return this._image;
135
+ get lutsOrColorMaps() {
136
+ let e = this.channels, t = (e) => e?.lut ?? e?.colorMap;
137
+ return o._repeat(this._renderSettings.lutsOrColorMaps, e)?.map((n, r) => n ?? t(e?.[r]));
32
138
  }
33
- get arrays() {
34
- if (this._arrays === void 0) throw Error("tile source not ready");
35
- return this._arrays;
139
+ get inverteds() {
140
+ let e = this.channels;
141
+ return o._repeat(this._renderSettings.inverteds, e)?.map((t, n) => t ?? e?.[n]?.inverted);
142
+ }
143
+ get autoBoost() {
144
+ return this._renderSettings.autoBoost;
36
145
  }
37
146
  whenReady() {
38
147
  return this._readyPromise;
39
148
  }
149
+ getWidth(e = this.maxLevel) {
150
+ if (e < 0 || e > this.maxLevel) throw Error("level out of bounds");
151
+ return o._getAxisSize(this.loaded, "x", this.maxLevel - e);
152
+ }
153
+ getHeight(e = this.maxLevel) {
154
+ if (e < 0 || e > this.maxLevel) throw Error("level out of bounds");
155
+ return o._getAxisSize(this.loaded, "y", this.maxLevel - e);
156
+ }
157
+ loadChunks(e, t, r) {
158
+ let i = {
159
+ t: this.t,
160
+ z: this.z
161
+ };
162
+ if (t !== void 0) {
163
+ let { x: n, y: r } = this.getNumTiles(e);
164
+ if (t.x < 0 || t.x >= n || t.y < 0 || t.y >= r) throw Error("tile out of bounds");
165
+ let a = this.getTileWidth(e), o = this.getTileHeight(e);
166
+ i.x = [t.x * a, (t.x + 1) * a], i.y = [t.y * o, (t.y + 1) * o];
167
+ }
168
+ let s = o._getAxisSize(this.loaded, "c"), c = n(this.cs ?? Array.from({ length: s }, (e, t) => t), this.loaded.arrays[this.maxLevel - e].shape, this.loaded.image.getAxesNames(), i);
169
+ return Promise.all(c.map((t) => a.get(this.loaded.arrays[this.maxLevel - e], t, r)));
170
+ }
40
171
  supports(e) {
41
- return Array.isArray(e) || e instanceof Document ? !1 : typeof e == "string" ? e.endsWith(".ozx") : "type" in e && e.type === "ome-zarr";
172
+ return Array.isArray(e) || e instanceof Document ? !1 : typeof e == "string" ? c(e) : "type" in e && e.type === "ome-zarr";
42
173
  }
43
174
  configure(e, t, n = null) {
44
175
  if (Array.isArray(e)) throw Error("configuration from array is not supported");
@@ -53,11 +184,11 @@ var o = class o extends i.TileSource {
53
184
  };
54
185
  }
55
186
  equals(e) {
56
- return e instanceof o && this.url === e.url && this.zip === e.zip && this.c === e.c && this.z === e.z && this.t === e.t && this.dataType === e.dataType && this.autoBoost === e.autoBoost;
187
+ return e instanceof o && this.url === e.url && this.zip === e.zip && this.t === e.t && this.z === e.z && this.cs?.join(",") === e.cs?.join(",") && this._renderSettingsHash === e._renderSettingsHash;
57
188
  }
58
- getImageInfo(n) {
59
- Promise.resolve(this._image ?? t.load(this.zip || this.zip === void 0 && n.endsWith(".ozx") ? e.fromUrl(n) : n)).then(async (e) => {
60
- let t = e.getAxesNames();
189
+ getImageInfo(e) {
190
+ Promise.resolve(this._loaded ?? o.loadOMEZarr(this.blob ?? e, this.zip)).then((e) => {
191
+ let t = e.image.getAxesNames();
61
192
  for (let e of t) if (![
62
193
  "t",
63
194
  "c",
@@ -67,38 +198,39 @@ var o = class o extends i.TileSource {
67
198
  ].includes(e)) throw Error(`unsupported axis: ${e}`);
68
199
  if (!t.includes("x") || !t.includes("y")) throw Error("missing X or Y axis");
69
200
  if (t.indexOf("y") > t.indexOf("x")) throw Error("X axis must come after Y axis");
70
- let n = await Promise.all(e.paths.map((t) => e.openArray(t))), r = t.indexOf("t"), i = r >= 0 ? n[0].shape[r] : 1;
71
- if (this.t !== void 0 && (this.t < 0 || this.t >= i)) throw Error(`Invalid t index ${this.t} for image with ${i} timepoints`);
72
- let a = t.indexOf("z"), o = a >= 0 ? n[0].shape[a] : 1;
73
- if (this.z !== void 0 && (this.z < 0 || this.z >= o)) throw Error(`Invalid z index ${this.z} for image with ${o} z-slices`);
74
- let s = t.indexOf("c"), c = s >= 0 ? n[0].shape[s] : 1;
75
- if (this.c !== void 0 && (this.c < 0 || this.c >= c)) throw Error(`Invalid c index ${this.c} for image with ${c} channels`);
76
- if (this.dataType !== "context2d" && this.c === void 0 && c > 1) throw Error(`Multi-channel image with ${c} channels; specify c or render as "context2d"`);
77
- let l = e.checkChannelIndex(this.c ?? 0);
78
- if (l.channels.length !== c) throw Error(`OME-Zarr metadata lists ${l.channels.length} channels, but the image has ${c}`);
79
- if (this._getActiveChannelIndices(l).length === 0) throw Error("No active channels; specify c or activate channels in the OME-Zarr metadata");
80
- this._image = e, this._arrays = n, this.width = n[0].shape[t.indexOf("x")], this.height = n[0].shape[t.indexOf("y")], this.maxLevel = n.length - 1, this.raiseEvent("ready", { tileSource: this });
81
- }).catch((e) => {
82
- this._image = void 0, this._arrays = void 0, this.width = 10, this.height = 10, this.maxLevel = 0, this.raiseEvent("open-failed", {
83
- message: `failed to get image info for ${n}: ${e}`,
84
- source: n
201
+ let n = o._getAxisSize(e, "t");
202
+ if (this._t !== void 0 && (this._t < 0 || this._t >= n)) throw Error(`Invalid t index ${this._t} for image with ${n} timepoints`);
203
+ let r = o._getAxisSize(e, "z");
204
+ if (this._z !== void 0 && (this._z < 0 || this._z >= r)) throw Error(`Invalid z index ${this._z} for image with ${r} z-slices`);
205
+ let i = o._getAxisSize(e, "c");
206
+ if (this._c !== void 0 && this._c.some((e) => e < 0 || e >= i)) throw Error(`Invalid c indices [${this._c?.join(", ")}] for image with ${i} channels`);
207
+ if (e.image.omero !== void 0 && e.image.omero.channels !== void 0 && e.image.omero.channels.length !== i) throw Error(`OME-Zarr metadata lists ${e.image.omero.channels.length} channels, but the image has ${i}`);
208
+ if (this._c === void 0 && e.image.omero !== void 0 && e.image.omero.channels !== void 0 && !e.image.omero.channels.some((e) => e.active !== !1)) throw Error("No active channels; specify c or activate channels in the OME-Zarr metadata");
209
+ this._loaded = e, this.width = e.arrays[0].shape[t.indexOf("x")], this.height = e.arrays[0].shape[t.indexOf("y")], this.maxLevel = e.arrays.length - 1, this.raiseEvent("ready", { tileSource: this });
210
+ }).catch((t) => {
211
+ this._loaded = void 0, this.width = 10, this.height = 10, this.maxLevel = 0, this.raiseEvent("open-failed", {
212
+ message: `failed to get image info for ${e}: ${t}`,
213
+ source: e
85
214
  });
86
215
  });
87
216
  }
88
217
  getTileWidth(e) {
89
- if (this._image === void 0 || this._arrays === void 0) throw Error("tile source not ready");
218
+ let { image: t, arrays: n } = this.loaded;
90
219
  if (e < 0 || e > this.maxLevel) throw Error("level out of bounds");
91
- return this._arrays[this.maxLevel - e].chunks[this._image.getAxesNames().indexOf("x")];
220
+ return n[this.maxLevel - e].chunks[t.getAxesNames().indexOf("x")];
92
221
  }
93
222
  getTileHeight(e) {
94
- if (this._image === void 0 || this._arrays === void 0) throw Error("tile source not ready");
223
+ let { image: t, arrays: n } = this.loaded;
95
224
  if (e < 0 || e > this.maxLevel) throw Error("level out of bounds");
96
- return this._arrays[this.maxLevel - e].chunks[this._image.getAxesNames().indexOf("y")];
225
+ return n[this.maxLevel - e].chunks[t.getAxesNames().indexOf("y")];
97
226
  }
98
227
  getLevelScale(e) {
99
- if (this._image === void 0 || this._arrays === void 0) throw Error("tile source not ready");
100
228
  if (e < 0 || e > this.maxLevel) throw Error("level out of bounds");
101
- return this._arrays[this.maxLevel - e].shape[this._image.getAxesNames().indexOf("x")] / this.width;
229
+ return this.getWidth(e) / this.width;
230
+ }
231
+ getNumTiles(e) {
232
+ if (e < 0 || e > this.maxLevel) throw Error("level out of bounds");
233
+ return new i.Point(Math.ceil(this.getWidth(e) / this.getTileWidth(e)), Math.ceil(this.getHeight(e) / this.getTileHeight(e)));
102
234
  }
103
235
  getTileUrl(e, t, n) {
104
236
  let r = new URLSearchParams();
@@ -106,84 +238,77 @@ var o = class o extends i.TileSource {
106
238
  }
107
239
  getTileHashKey(e, t, n) {
108
240
  let r = new URL(this.url);
109
- return r.searchParams.append("level", e.toString()), r.searchParams.append("x", t.toString()), r.searchParams.append("y", n.toString()), this.zip !== void 0 && r.searchParams.append("zip", this.zip.toString()), this.c !== void 0 && r.searchParams.append("c", this.c.toString()), this.z !== void 0 && r.searchParams.append("z", this.z.toString()), this.t !== void 0 && r.searchParams.append("t", this.t.toString()), r.searchParams.append("dataType", this.dataType), this.autoBoost !== void 0 && r.searchParams.append("autoBoost", this.autoBoost.toString()), r.toString();
241
+ return r.searchParams.append("zip", this.zip.toString()), this.t !== void 0 && r.searchParams.append("t", this.t.toString()), this.z !== void 0 && r.searchParams.append("z", this.z.toString()), this.cs !== void 0 && r.searchParams.append("c", this.cs.join(",")), r.searchParams.append("y", n.toString()), r.searchParams.append("x", t.toString()), r.searchParams.append("level", e.toString()), r.searchParams.append("render", this._renderSettingsHash.toString(16)), r.toString();
110
242
  }
111
243
  downloadTileStart(e) {
112
- let t = e.userData, r = new AbortController();
113
- t.abortController = r;
114
- let i = new URLSearchParams(e.src), s = +i.get("level"), c = +i.get("x"), l = +i.get("y");
244
+ let t = e.userData, n = new AbortController();
245
+ t.abortController = n;
246
+ let r = new URLSearchParams(e.src), i = +r.get("level"), a = +r.get("x"), o = +r.get("y");
115
247
  try {
116
- if (this._image === void 0 || this._arrays === void 0) throw Error("tile source not ready");
117
- let t = this._arrays[this.maxLevel - s], i = this._image.checkChannelIndex(this.c ?? 0), u = this._getActiveChannelIndices(i), d = u.map((e) => i.channels[e]), f = this.getTileWidth(s), p = this.getTileHeight(s), m = n(u, t.shape, this._image.getAxesNames(), {
118
- x: [c * f, (c + 1) * f],
119
- y: [l * p, (l + 1) * p],
120
- z: this.z ?? i.rdefs?.defaultZ,
121
- t: this.t ?? i.rdefs?.defaultT
122
- });
123
- Promise.all(m.map((e) => a.get(t, e, { signal: r.signal }))).then((t) => {
124
- if (this.dataType === "context2d") {
125
- let n = o._render(t, d, this.autoBoost);
126
- e.finish(n, null, "context2d");
127
- } else {
128
- let n = {
129
- chunk: t[0],
130
- channel: d[0],
131
- autoBoost: this.autoBoost
132
- };
133
- e.finish(n, null, "ome-zarr");
134
- }
135
- }).catch((t) => {
136
- let n = r.signal.aborted;
137
- r.abort(), n || e.fail(`failed to render tile for level=${s}, x=${c}, y=${l}: ${String(t)}`, null);
248
+ this.loadChunks(i, {
249
+ x: a,
250
+ y: o
251
+ }, { signal: n.signal }).then((n) => {
252
+ let r = this.ranges, i = this.colors, a = this.inverteds, o = this.lutsOrColorMaps, s = this.autoBoost, c = {
253
+ chunks: n,
254
+ ranges: n.map((e, t) => {
255
+ let [n, i] = r?.[t] ?? l(e);
256
+ return n < i ? [n, i] : [n, n + 1];
257
+ }),
258
+ colors: n.map((e, t) => i?.[t] ?? [
259
+ 255,
260
+ 255,
261
+ 255
262
+ ]),
263
+ lutsOrColorMaps: n.map((e, t) => o?.[t]),
264
+ inverteds: n.map((e, t) => a?.[t] ?? !1),
265
+ autoBoost: s
266
+ };
267
+ t.abortController = void 0, e.finish(c, null, "ome-zarr");
268
+ }, (t) => {
269
+ let r = n.signal.aborted;
270
+ n.abort(), r || e.fail(`failed to load chunks for level=${i}, x=${a}, y=${o}: ${String(t)}`, null);
138
271
  });
139
272
  } catch (t) {
140
- e.fail(`failed to download tile for level=${s}, x=${c}, y=${l}: ${String(t)}`, null);
273
+ e.fail(`failed to download tile for level=${i}, x=${a}, y=${o}: ${String(t)}`, null);
141
274
  }
142
275
  }
143
276
  downloadTileAbort(e) {
144
277
  let t = e.userData;
145
278
  t.abortController !== void 0 && (t.abortController.abort(), t.abortController = void 0);
146
279
  }
147
- static enable(e = i) {
148
- Object.assign(e, { OMEZarrTileSource: o }), o._learnConverters(e);
280
+ static _normalize(e, t, n, r) {
281
+ let i = e[t];
282
+ if (i !== void 0) {
283
+ if (n(i)) {
284
+ let e = i;
285
+ return r === void 0 ? [e] : r.map(() => e);
286
+ }
287
+ if (!Array.isArray(i) || !i.every((e) => e === void 0 || n(e))) throw Error(`${t} must be a value or an array of values`);
288
+ if (i.length === 0) throw Error(`${t} array must be non-empty`);
289
+ if (r !== void 0 && i.length !== r.length) throw Error(`${t} array length ${i.length} does not match number of channels ${r.length} in c`);
290
+ return i;
291
+ }
292
+ }
293
+ static _repeat(e, t) {
294
+ return e === void 0 ? t?.map(() => void 0) : e.length === 1 && t !== void 0 ? t.map(() => e[0]) : e;
149
295
  }
150
296
  static _learnConverters(e) {
151
- e.converter.existsType("ome-zarr") || (e.converter.learn("ome-zarr", "context2d", (e, { chunk: t, channel: n, autoBoost: r }) => o._render([t], [n], r), 1, 1), e.converter.learn("ome-zarr", "ome-zarr", (e, t) => ({
297
+ e.converter.existsType("ome-zarr") || (e.converter.learn("ome-zarr", "context2d", (e, t) => o.render(t), 1, 1), e.converter.learn("ome-zarr", "ome-zarr", (e, t) => ({
152
298
  ...t,
153
- chunk: {
154
- ...t.chunk,
155
- data: t.chunk.data.slice()
156
- }
299
+ chunks: t.chunks.map((e) => ({
300
+ ...e,
301
+ data: e.data.slice()
302
+ }))
157
303
  })));
158
304
  }
159
- _getActiveChannelIndices(e) {
160
- return this.c !== void 0 || this.dataType !== "context2d" ? [this.c ?? 0] : e.channels.flatMap((e, t) => e.active === !1 ? [] : [t]);
161
- }
162
- static _render(e, t, n) {
163
- let i = t.map((e) => {
164
- let t = e.color.replace(/^#/, "");
165
- return [
166
- parseInt(t.slice(0, 2), 16),
167
- parseInt(t.slice(2, 4), 16),
168
- parseInt(t.slice(4, 6), 16)
169
- ];
170
- }), a = r(e, t.map((t, n) => {
171
- let [r, i] = t.window.start !== void 0 && t.window.end !== void 0 ? [t.window.start, t.window.end] : o._getDataTypeRange(e[n]);
172
- return r < i ? [r, i] : [r, r + 1];
173
- }), i, t.map((e) => e.lut ?? e.colorMap), t.map((e) => e.inverted === !0), n), s = e[0].shape[1], c = e[0].shape[0], l = document.createElement("canvas");
174
- l.width = s, l.height = c;
175
- let u = l.getContext("2d");
176
- if (u === null) throw Error("failed to get 2D canvas context");
177
- let d = new ImageData(a, s, c);
178
- return u.putImageData(d, 0, 0), u;
179
- }
180
- static _getDataTypeRange(e) {
181
- let { data: t } = e;
182
- return t instanceof Int8Array ? [-128, 127] : t instanceof Uint8Array ? [0, 255] : t instanceof Int16Array ? [-32768, 32767] : t instanceof Uint16Array ? [0, 65535] : t instanceof Int32Array ? [-2147483648, 2147483647] : t instanceof Uint32Array ? [0, 4294967295] : t instanceof BigInt64Array ? [-(2 ** 63), 2 ** 63 - 1] : t instanceof BigUint64Array ? [0, 2 ** 64 - 1] : [0, 1];
305
+ static _getAxisSize(e, t, n = 0) {
306
+ let r = e.image.getAxesNames().indexOf(t);
307
+ return r >= 0 ? e.arrays[n].shape[r] : 1;
183
308
  }
184
309
  };
185
310
  //#endregion
186
311
  //#region src/main.ts
187
- globalThis.OpenSeadragon && o.enable(globalThis.OpenSeadragon);
312
+ globalThis.OpenSeadragon && d.enable(globalThis.OpenSeadragon);
188
313
  //#endregion
189
- export { o as OMEZarrTileSource };
314
+ export { d as OMEZarrTileSource, u as fnv1a, l as getDataTypeRange, c as isOZX, s as resolveUrl };
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "omezarr-tilesource",
3
- "version": "0.5.0",
3
+ "version": "0.7.0",
4
4
  "description": "An OpenSeadragon tile source for the OME-Zarr bioimage file format",
5
5
  "homepage": "https://github.com/TissUUmaps/OMEZarrTileSource#readme",
6
6
  "bugs": "https://github.com/TissUUmaps/OMEZarrTileSource/issues",