okstra 0.114.0 → 0.116.0

package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py

@@ -1,327 +0,0 @@
-"""Unit tests for the :mod:`networkx.algorithms.bipartite.matching` module."""
-
-import itertools
-
-import pytest
-
-import networkx as nx
-from networkx.algorithms.bipartite.matching import (
-    eppstein_matching,
-    hopcroft_karp_matching,
-    maximum_matching,
-    minimum_weight_full_matching,
-    to_vertex_cover,
-)
-
-
-class TestMatching:
-    """Tests for bipartite matching algorithms."""
-
-    def setup_method(self):
-        """Creates a bipartite graph for use in testing matching algorithms.
-
-        The bipartite graph has a maximum cardinality matching that leaves
-        vertex 1 and vertex 10 unmatched. The first six numbers are the left
-        vertices and the next six numbers are the right vertices.
-
-        """
-        self.simple_graph = nx.complete_bipartite_graph(2, 3)
-        self.simple_solution = {0: 2, 1: 3, 2: 0, 3: 1}
-
-        edges = [(0, 7), (0, 8), (2, 6), (2, 9), (3, 8), (4, 8), (4, 9), (5, 11)]
-        self.top_nodes = set(range(6))
-        self.graph = nx.Graph()
-        self.graph.add_nodes_from(range(12))
-        self.graph.add_edges_from(edges)
-
-        # Example bipartite graph from issue 2127
-        G = nx.Graph()
-        G.add_nodes_from(
-            [
-                (1, "C"),
-                (1, "B"),
-                (0, "G"),
-                (1, "F"),
-                (1, "E"),
-                (0, "C"),
-                (1, "D"),
-                (1, "I"),
-                (0, "A"),
-                (0, "D"),
-                (0, "F"),
-                (0, "E"),
-                (0, "H"),
-                (1, "G"),
-                (1, "A"),
-                (0, "I"),
-                (0, "B"),
-                (1, "H"),
-            ]
-        )
-        G.add_edge((1, "C"), (0, "A"))
-        G.add_edge((1, "B"), (0, "A"))
-        G.add_edge((0, "G"), (1, "I"))
-        G.add_edge((0, "G"), (1, "H"))
-        G.add_edge((1, "F"), (0, "A"))
-        G.add_edge((1, "F"), (0, "C"))
-        G.add_edge((1, "F"), (0, "E"))
-        G.add_edge((1, "E"), (0, "A"))
-        G.add_edge((1, "E"), (0, "C"))
-        G.add_edge((0, "C"), (1, "D"))
-        G.add_edge((0, "C"), (1, "I"))
-        G.add_edge((0, "C"), (1, "G"))
-        G.add_edge((0, "C"), (1, "H"))
-        G.add_edge((1, "D"), (0, "A"))
-        G.add_edge((1, "I"), (0, "A"))
-        G.add_edge((1, "I"), (0, "E"))
-        G.add_edge((0, "A"), (1, "G"))
-        G.add_edge((0, "A"), (1, "H"))
-        G.add_edge((0, "E"), (1, "G"))
-        G.add_edge((0, "E"), (1, "H"))
-        self.disconnected_graph = G
-
-    def check_match(self, matching):
-        """Asserts that the matching is what we expect from the bipartite graph
-        constructed in the :meth:`setup` fixture.
-
-        """
-        # For the sake of brevity, rename `matching` to `M`.
-        M = matching
-        matched_vertices = frozenset(itertools.chain(*M.items()))
-        # Assert that the maximum number of vertices (10) is matched.
-        assert matched_vertices == frozenset(range(12)) - {1, 10}
-        # Assert that no vertex appears in two edges, or in other words, that
-        # the matching (u, v) and (v, u) both appear in the matching
-        # dictionary.
-        assert all(u == M[M[u]] for u in range(12) if u in M)
-
-    def check_vertex_cover(self, vertices):
-        """Asserts that the given set of vertices is the vertex cover we
-        expected from the bipartite graph constructed in the :meth:`setup`
-        fixture.
-
-        """
-        # By Konig's theorem, the number of edges in a maximum matching equals
-        # the number of vertices in a minimum vertex cover.
-        assert len(vertices) == 5
-        # Assert that the set is truly a vertex cover.
-        for u, v in self.graph.edges():
-            assert u in vertices or v in vertices
-        # TODO Assert that the vertices are the correct ones.
-
-    def test_eppstein_matching(self):
-        """Tests that David Eppstein's implementation of the Hopcroft--Karp
-        algorithm produces a maximum cardinality matching.
-
-        """
-        self.check_match(eppstein_matching(self.graph, self.top_nodes))
-
-    def test_hopcroft_karp_matching(self):
-        """Tests that the Hopcroft--Karp algorithm produces a maximum
-        cardinality matching in a bipartite graph.
-
-        """
-        self.check_match(hopcroft_karp_matching(self.graph, self.top_nodes))
-
-    def test_to_vertex_cover(self):
-        """Test for converting a maximum matching to a minimum vertex cover."""
-        matching = maximum_matching(self.graph, self.top_nodes)
-        vertex_cover = to_vertex_cover(self.graph, matching, self.top_nodes)
-        self.check_vertex_cover(vertex_cover)
-
-    def test_eppstein_matching_simple(self):
-        match = eppstein_matching(self.simple_graph)
-        assert match == self.simple_solution
-
-    def test_hopcroft_karp_matching_simple(self):
-        match = hopcroft_karp_matching(self.simple_graph)
-        assert match == self.simple_solution
-
-    def test_eppstein_matching_disconnected(self):
-        with pytest.raises(nx.AmbiguousSolution):
-            match = eppstein_matching(self.disconnected_graph)
-
-    def test_hopcroft_karp_matching_disconnected(self):
-        with pytest.raises(nx.AmbiguousSolution):
-            match = hopcroft_karp_matching(self.disconnected_graph)
-
-    def test_issue_2127(self):
-        """Test from issue 2127"""
-        # Build the example DAG
-        G = nx.DiGraph()
-        G.add_edge("A", "C")
-        G.add_edge("A", "B")
-        G.add_edge("C", "E")
-        G.add_edge("C", "D")
-        G.add_edge("E", "G")
-        G.add_edge("E", "F")
-        G.add_edge("G", "I")
-        G.add_edge("G", "H")
-
-        tc = nx.transitive_closure(G)
-        btc = nx.Graph()
-
-        # Create a bipartite graph based on the transitive closure of G
-        for v in tc.nodes():
-            btc.add_node((0, v))
-            btc.add_node((1, v))
-
-        for u, v in tc.edges():
-            btc.add_edge((0, u), (1, v))
-
-        top_nodes = {n for n in btc if n[0] == 0}
-        matching = hopcroft_karp_matching(btc, top_nodes)
-        vertex_cover = to_vertex_cover(btc, matching, top_nodes)
-        independent_set = set(G) - {v for _, v in vertex_cover}
-        assert {"B", "D", "F", "I", "H"} == independent_set
-
-    def test_vertex_cover_issue_2384(self):
-        G = nx.Graph([(0, 3), (1, 3), (1, 4), (2, 3)])
-        matching = maximum_matching(G)
-        vertex_cover = to_vertex_cover(G, matching)
-        for u, v in G.edges():
-            assert u in vertex_cover or v in vertex_cover
-
-    def test_vertex_cover_issue_3306(self):
-        G = nx.Graph()
-        edges = [(0, 2), (1, 0), (1, 1), (1, 2), (2, 2)]
-        G.add_edges_from([((i, "L"), (j, "R")) for i, j in edges])
-
-        matching = maximum_matching(G)
-        vertex_cover = to_vertex_cover(G, matching)
-        for u, v in G.edges():
-            assert u in vertex_cover or v in vertex_cover
-
-    def test_unorderable_nodes(self):
-        a = object()
-        b = object()
-        c = object()
-        d = object()
-        e = object()
-        G = nx.Graph([(a, d), (b, d), (b, e), (c, d)])
-        matching = maximum_matching(G)
-        vertex_cover = to_vertex_cover(G, matching)
-        for u, v in G.edges():
-            assert u in vertex_cover or v in vertex_cover
-
-
-def test_eppstein_matching():
-    """Test in accordance to issue #1927"""
-    G = nx.Graph()
-    G.add_nodes_from(["a", 2, 3, 4], bipartite=0)
-    G.add_nodes_from([1, "b", "c"], bipartite=1)
-    G.add_edges_from([("a", 1), ("a", "b"), (2, "b"), (2, "c"), (3, "c"), (4, 1)])
-    matching = eppstein_matching(G)
-    assert len(matching) == len(maximum_matching(G))
-    assert all(x in set(matching.keys()) for x in set(matching.values()))
-
-
-class TestMinimumWeightFullMatching:
-    @classmethod
-    def setup_class(cls):
-        pytest.importorskip("scipy")
-
-    def test_minimum_weight_full_matching_incomplete_graph(self):
-        B = nx.Graph()
-        B.add_nodes_from([1, 2], bipartite=0)
-        B.add_nodes_from([3, 4], bipartite=1)
-        B.add_edge(1, 4, weight=100)
-        B.add_edge(2, 3, weight=100)
-        B.add_edge(2, 4, weight=50)
-        matching = minimum_weight_full_matching(B)
-        assert matching == {1: 4, 2: 3, 4: 1, 3: 2}
-
-    def test_minimum_weight_full_matching_with_no_full_matching(self):
-        B = nx.Graph()
-        B.add_nodes_from([1, 2, 3], bipartite=0)
-        B.add_nodes_from([4, 5, 6], bipartite=1)
-        B.add_edge(1, 4, weight=100)
-        B.add_edge(2, 4, weight=100)
-        B.add_edge(3, 4, weight=50)
-        B.add_edge(3, 5, weight=50)
-        B.add_edge(3, 6, weight=50)
-        with pytest.raises(ValueError):
-            minimum_weight_full_matching(B)
-
-    def test_minimum_weight_full_matching_square(self):
-        G = nx.complete_bipartite_graph(3, 3)
-        G.add_edge(0, 3, weight=400)
-        G.add_edge(0, 4, weight=150)
-        G.add_edge(0, 5, weight=400)
-        G.add_edge(1, 3, weight=400)
-        G.add_edge(1, 4, weight=450)
-        G.add_edge(1, 5, weight=600)
-        G.add_edge(2, 3, weight=300)
-        G.add_edge(2, 4, weight=225)
-        G.add_edge(2, 5, weight=300)
-        matching = minimum_weight_full_matching(G)
-        assert matching == {0: 4, 1: 3, 2: 5, 4: 0, 3: 1, 5: 2}
-
-    def test_minimum_weight_full_matching_smaller_left(self):
-        G = nx.complete_bipartite_graph(3, 4)
-        G.add_edge(0, 3, weight=400)
-        G.add_edge(0, 4, weight=150)
-        G.add_edge(0, 5, weight=400)
-        G.add_edge(0, 6, weight=1)
-        G.add_edge(1, 3, weight=400)
-        G.add_edge(1, 4, weight=450)
-        G.add_edge(1, 5, weight=600)
-        G.add_edge(1, 6, weight=2)
-        G.add_edge(2, 3, weight=300)
-        G.add_edge(2, 4, weight=225)
-        G.add_edge(2, 5, weight=290)
-        G.add_edge(2, 6, weight=3)
-        matching = minimum_weight_full_matching(G)
-        assert matching == {0: 4, 1: 6, 2: 5, 4: 0, 5: 2, 6: 1}
-
-    def test_minimum_weight_full_matching_smaller_top_nodes_right(self):
-        G = nx.complete_bipartite_graph(3, 4)
-        G.add_edge(0, 3, weight=400)
-        G.add_edge(0, 4, weight=150)
-        G.add_edge(0, 5, weight=400)
-        G.add_edge(0, 6, weight=1)
-        G.add_edge(1, 3, weight=400)
-        G.add_edge(1, 4, weight=450)
-        G.add_edge(1, 5, weight=600)
-        G.add_edge(1, 6, weight=2)
-        G.add_edge(2, 3, weight=300)
-        G.add_edge(2, 4, weight=225)
-        G.add_edge(2, 5, weight=290)
-        G.add_edge(2, 6, weight=3)
-        matching = minimum_weight_full_matching(G, top_nodes=[3, 4, 5, 6])
-        assert matching == {0: 4, 1: 6, 2: 5, 4: 0, 5: 2, 6: 1}
-
-    def test_minimum_weight_full_matching_smaller_right(self):
-        G = nx.complete_bipartite_graph(4, 3)
-        G.add_edge(0, 4, weight=400)
-        G.add_edge(0, 5, weight=400)
-        G.add_edge(0, 6, weight=300)
-        G.add_edge(1, 4, weight=150)
-        G.add_edge(1, 5, weight=450)
-        G.add_edge(1, 6, weight=225)
-        G.add_edge(2, 4, weight=400)
-        G.add_edge(2, 5, weight=600)
-        G.add_edge(2, 6, weight=290)
-        G.add_edge(3, 4, weight=1)
-        G.add_edge(3, 5, weight=2)
-        G.add_edge(3, 6, weight=3)
-        matching = minimum_weight_full_matching(G)
-        assert matching == {1: 4, 2: 6, 3: 5, 4: 1, 5: 3, 6: 2}
-
-    def test_minimum_weight_full_matching_negative_weights(self):
-        G = nx.complete_bipartite_graph(2, 2)
-        G.add_edge(0, 2, weight=-2)
-        G.add_edge(0, 3, weight=0.2)
-        G.add_edge(1, 2, weight=-2)
-        G.add_edge(1, 3, weight=0.3)
-        matching = minimum_weight_full_matching(G)
-        assert matching == {0: 3, 1: 2, 2: 1, 3: 0}
-
-    def test_minimum_weight_full_matching_different_weight_key(self):
-        G = nx.complete_bipartite_graph(2, 2)
-        G.add_edge(0, 2, mass=2)
-        G.add_edge(0, 3, mass=0.2)
-        G.add_edge(1, 2, mass=1)
-        G.add_edge(1, 3, mass=2)
-        matching = minimum_weight_full_matching(G, weight="mass")
-        assert matching == {0: 3, 1: 2, 2: 1, 3: 0}

package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py

@@ -1,138 +0,0 @@
-import itertools
-
-import pytest
-
-import networkx as nx
-from networkx.algorithms import bipartite
-from networkx.utils import edges_equal
-
-np = pytest.importorskip("numpy")
-sp = pytest.importorskip("scipy")
-
-
-class TestBiadjacencyMatrix:
-    def test_biadjacency_matrix_weight(self):
-        G = nx.path_graph(5)
-        G.add_edge(0, 1, weight=2, other=4)
-        X = [1, 3]
-        Y = [0, 2, 4]
-        M = bipartite.biadjacency_matrix(G, X, weight="weight")
-        assert M[0, 0] == 2
-        M = bipartite.biadjacency_matrix(G, X, weight="other")
-        assert M[0, 0] == 4
-
-    def test_biadjacency_matrix(self):
-        tops = [2, 5, 10]
-        bots = [5, 10, 15]
-        for i in range(len(tops)):
-            G = bipartite.random_graph(tops[i], bots[i], 0.2)
-            top = [n for n, d in G.nodes(data=True) if d["bipartite"] == 0]
-            M = bipartite.biadjacency_matrix(G, top)
-            assert M.shape[0] == tops[i]
-            assert M.shape[1] == bots[i]
-
-    def test_biadjacency_matrix_order(self):
-        G = nx.path_graph(5)
-        G.add_edge(0, 1, weight=2)
-        X = [3, 1]
-        Y = [4, 2, 0]
-        M = bipartite.biadjacency_matrix(G, X, Y, weight="weight")
-        assert M[1, 2] == 2
-
-    def test_biadjacency_matrix_empty_graph(self):
-        G = nx.empty_graph(2)
-        M = nx.bipartite.biadjacency_matrix(G, [0])
-        assert np.array_equal(M.toarray(), np.array([[0]]))
-
-    def test_null_graph(self):
-        with pytest.raises(nx.NetworkXError):
-            bipartite.biadjacency_matrix(nx.Graph(), [])
-
-    def test_empty_graph(self):
-        with pytest.raises(nx.NetworkXError):
-            bipartite.biadjacency_matrix(nx.Graph([(1, 0)]), [])
-
-    def test_duplicate_row(self):
-        with pytest.raises(nx.NetworkXError):
-            bipartite.biadjacency_matrix(nx.Graph([(1, 0)]), [1, 1])
-
-    def test_duplicate_col(self):
-        with pytest.raises(nx.NetworkXError):
-            bipartite.biadjacency_matrix(nx.Graph([(1, 0)]), [0], [1, 1])
-
-    def test_format_keyword(self):
-        with pytest.raises(nx.NetworkXError):
-            bipartite.biadjacency_matrix(nx.Graph([(1, 0)]), [0], format="foo")
-
-    def test_from_biadjacency_roundtrip(self):
-        B1 = nx.path_graph(5)
-        M = bipartite.biadjacency_matrix(B1, [0, 2, 4])
-        B2 = bipartite.from_biadjacency_matrix(M)
-        assert nx.is_isomorphic(B1, B2)
-
-    def test_from_biadjacency_weight(self):
-        M = sp.sparse.csc_array([[1, 2], [0, 3]])
-        B = bipartite.from_biadjacency_matrix(M)
-        assert edges_equal(B.edges(), [(0, 2), (0, 3), (1, 3)])
-        B = bipartite.from_biadjacency_matrix(M, edge_attribute="weight")
-        e = [(0, 2, {"weight": 1}), (0, 3, {"weight": 2}), (1, 3, {"weight": 3})]
-        assert edges_equal(B.edges(data=True), e)
-
-    def test_from_biadjacency_multigraph(self):
-        M = sp.sparse.csc_array([[1, 2], [0, 3]])
-        B = bipartite.from_biadjacency_matrix(M, create_using=nx.MultiGraph())
-        assert edges_equal(B.edges(), [(0, 2), (0, 3), (0, 3), (1, 3), (1, 3), (1, 3)])
-
-    @pytest.mark.parametrize(
-        "row_order,column_order,create_using",
-        itertools.product(
-            (None, ("a", "b"), (25, (0, 5, 10))),
-            (None, ("c", "d"), (26, (0, 5, 10))),
-            (nx.Graph, nx.DiGraph, nx.MultiGraph, nx.MultiDiGraph),
-        ),
-    )
-    def test_from_biadjacency_nodelist(self, row_order, column_order, create_using):
-        M = sp.sparse.csc_array([[1, 2], [0, 3]])
-        B_default = bipartite.from_biadjacency_matrix(M, create_using=create_using())
-        B = bipartite.from_biadjacency_matrix(
-            M,
-            create_using=create_using(),
-            row_order=row_order,
-            column_order=column_order,
-        )
-
-        row_order = row_order if row_order else list(range(M.shape[0]))
-        column_order = (
-            column_order
-            if column_order
-            else list(range(M.shape[0], M.shape[0] + M.shape[1]))
-        )
-
-        top_map = dict(enumerate(row_order))
-
-        bottom_map = {idx + M.shape[0]: node for idx, node in enumerate(column_order)}
-
-        def map_edges(edges):
-            return [(top_map[u], bottom_map[v]) for u, v in edges]
-
-        mapped_edges = map_edges(B_default.edges())
-        assert edges_equal(mapped_edges, B.edges())
-
-    def test_invalid_from_biadjacency_nodelist(self):
-        M = sp.sparse.csc_array([[1, 2], [0, 3]])
-        # For when top nodelist has the wrong length
-        row_order_invalid = ["a", "b", "c"]
-        # For when bottom nodelist has the wrong length
-        column_order_invalid = ["c", "d", "e"]
-        with pytest.raises(ValueError):
-            bipartite.from_biadjacency_matrix(
-                M,
-                create_using=nx.MultiGraph(),
-                row_order=row_order_invalid,
-            )
-        with pytest.raises(ValueError):
-            bipartite.from_biadjacency_matrix(
-                M,
-                create_using=nx.MultiGraph(),
-                column_order=column_order_invalid,
-            )