oh-my-second-brain 0.3.0 → 0.6.2

package/dist/kernel/engine/assemble.js

@@ -10,13 +10,107 @@
  * - Lex-only semantic queries must remain usable without embedding configuration.
  */
 import { requireRealEmbeddingProvider } from "./embed/provider.js";
+import { EMBEDDING_MODEL_ENV, EMBEDDING_PROVIDER_ENV, resolveEmbeddingModel, } from "./embed/model.js";
 import { openEngineStore, openEngineStoreCore, openInMemoryEngineStoreCore, openEngineStoreCoreReadOnly, openEngineStoreReadOnly, } from "./embed/store.js";
+import { makeEmbeddingIdentity } from "./embed/identity.js";
 import { syncEngineStore } from "./embed/sync.js";
 import { McpEngineAdapter } from "./mcp/facade.js";
 import { makeDeferredProvider, makeDeferredStore } from "./embed/deferred.js";
-// ---------------------------------------------------------------------------
-// Public factories
-// ---------------------------------------------------------------------------
+function embeddingIdentitiesMatch(stored, configured) {
+    return stored.provider === configured.provider &&
+        stored.model === configured.model &&
+        stored.dimensions === configured.dimensions &&
+        stored.contextLength === configured.contextLength &&
+        stored.mrlDim === configured.mrlDim &&
+        stored.normalization === configured.normalization &&
+        stored.prefixScheme === configured.prefixScheme &&
+        stored.fingerprint === configured.fingerprint;
+}
+function validateEmbeddingDescriptor(descriptor, overrides = {}) {
+    const dimensions = overrides.embeddingDimensions ?? descriptor.dimensions;
+    const context = overrides.embeddingContext ??
+        overrides.embeddingContextLength ??
+        overrides.embeddingContextTokens ??
+        descriptor.context ??
+        descriptor.contextLength ??
+        descriptor.contextTokens;
+    const mrlDim = overrides.embeddingMrlDim ?? descriptor.mrlDim;
+    const normalization = overrides.embeddingNormalization ?? descriptor.normalization;
+    const prefixScheme = overrides.embeddingPrefixScheme ?? descriptor.prefixScheme;
+    if (dimensions === undefined ||
+        context === undefined ||
+        mrlDim === undefined ||
+        !normalization?.trim() ||
+        !prefixScheme?.trim()) {
+        throw new Error("Embedding descriptor is incomplete. dimensions/context/mrlDim/normalization/prefixScheme are required.");
+    }
+    if (!Number.isInteger(dimensions) || dimensions <= 0) {
+        throw new Error("Embedding descriptor dimensions must be a positive integer.");
+    }
+    if (!Number.isInteger(context) || context <= 0) {
+        throw new Error("Embedding descriptor context must be a positive integer.");
+    }
+    if (!Number.isInteger(mrlDim) || mrlDim < 0) {
+        throw new Error("Embedding descriptor mrlDim must be a non-negative integer.");
+    }
+}
+function resolvedEmbeddingConfig(config) {
+    const hasExplicitConfig = config.embeddingProvider !== undefined || config.embeddingModel !== undefined;
+    const resolution = resolveEmbeddingModel({
+        env: hasExplicitConfig
+            ? {
+                [EMBEDDING_PROVIDER_ENV]: config.embeddingProvider,
+                [EMBEDDING_MODEL_ENV]: config.embeddingModel,
+            }
+            : process.env,
+        ...(config.embeddingDescriptor !== undefined
+            ? { installedDefault: config.embeddingDescriptor }
+            : {}),
+        ...(config.embeddingCacheDir !== undefined ? { cacheDir: config.embeddingCacheDir } : {}),
+    });
+    if (!resolution.available)
+        return {};
+    const descriptor = config.embeddingDescriptor === null
+        ? undefined
+        : config.embeddingDescriptor ?? resolution.descriptor;
+    if (descriptor !== undefined) {
+        if (hasExplicitConfig) {
+            const descriptorModel = descriptor.path || descriptor.modelPath || descriptor.model;
+            const resolvedModel = resolution.modelPath ?? resolution.model;
+            if (descriptor.provider.trim() !== resolution.provider?.trim() ||
+                (descriptorModel.trim() !== resolvedModel?.trim() && descriptor.model.trim() !== resolvedModel?.trim())) {
+                throw new Error("Embedding descriptor does not match the configured provider/model.");
+            }
+        }
+        validateEmbeddingDescriptor(descriptor, config);
+    }
+    return {
+        provider: resolution.provider,
+        model: resolution.modelPath ?? resolution.model,
+        ...(descriptor !== undefined ? { descriptor } : {}),
+        ...((config.embeddingDimensions ?? descriptor?.dimensions) !== undefined
+            ? { dimensions: config.embeddingDimensions ?? descriptor?.dimensions }
+            : {}),
+        ...((config.embeddingContext ?? descriptor?.context) !== undefined
+            ? { context: config.embeddingContext ?? descriptor?.context }
+            : {}),
+        ...((config.embeddingContextLength ?? descriptor?.contextLength) !== undefined
+            ? { contextLength: config.embeddingContextLength ?? descriptor?.contextLength }
+            : {}),
+        ...((config.embeddingContextTokens ?? descriptor?.contextTokens) !== undefined
+            ? { contextTokens: config.embeddingContextTokens ?? descriptor?.contextTokens }
+            : {}),
+        ...((config.embeddingMrlDim ?? descriptor?.mrlDim) !== undefined
+            ? { mrlDim: config.embeddingMrlDim ?? descriptor?.mrlDim }
+            : {}),
+        ...((config.embeddingNormalization ?? descriptor?.normalization) !== undefined
+            ? { normalization: config.embeddingNormalization ?? descriptor?.normalization }
+            : {}),
+        ...((config.embeddingPrefixScheme ?? descriptor?.prefixScheme) !== undefined
+            ? { prefixScheme: config.embeddingPrefixScheme ?? descriptor?.prefixScheme }
+            : {}),
+    };
+}
 /**
  * Assemble a semantic-capable engine with a REAL embedding provider.
  *
@@ -26,36 +120,81 @@ import { makeDeferredProvider, makeDeferredStore } from "./embed/deferred.js";
 export function assembleEngine(config) {
     const vault = config.vault;
     const dbPath = config.dbPath ?? `${vault}/.oms/engine-store.sqlite`;
+    const embedding = resolvedEmbeddingConfig(config);
     const provider = requireRealEmbeddingProvider({
-        provider: config.embeddingProvider,
-        model: config.embeddingModel,
+        provider: embedding.provider,
+        model: embedding.model,
+        dimensions: embedding.dimensions,
+        context: embedding.context,
+        contextLength: embedding.contextLength,
+        contextTokens: embedding.contextTokens,
+        mrlDim: embedding.mrlDim,
+        normalization: embedding.normalization,
+        prefixScheme: embedding.prefixScheme,
     });
-    const store = openEngineStore(dbPath, provider.dimensions);
+    let activeStore = openEngineStore(dbPath, provider.dimensions);
     const deps = {
-        store,
+        store: activeStore,
         embed: provider,
         ...(config.rrfK !== undefined ? { rrfK: config.rrfK } : {}),
+        ...(config.policy !== undefined ? { policy: config.policy } : {}),
         ...(config.graphDepth !== undefined ? { graphDepth: config.graphDepth } : {}),
     };
     const adapter = new McpEngineAdapter(deps, vault, {
-        embeddingProvider: config.embeddingProvider,
-        embeddingModel: config.embeddingModel,
+        embeddingProvider: embedding.provider,
+        embeddingModel: embedding.model,
+        embeddingDescriptor: embedding.descriptor,
+        embeddingDimensions: embedding.dimensions,
+        embeddingContext: embedding.context,
+        embeddingContextLength: embedding.contextLength,
+        embeddingContextTokens: embedding.contextTokens,
+        embeddingMrlDim: embedding.mrlDim,
+        embeddingNormalization: embedding.normalization,
+        embeddingPrefixScheme: embedding.prefixScheme,
+        dbPath,
+        onStoreRebind: (store) => {
+            activeStore = store;
+        },
     }, config.reranker, true);
-    return {
+    const assembled = {
         adapter,
         deps,
-        store,
+        get store() {
+            return activeStore;
+        },
         provider,
         implicitLexicalSync: true,
         async syncVault(opts = {}) {
+            let swapHandleClosed = false;
             const result = await syncEngineStore({
                 vault,
                 dbPath,
                 collectionPath: opts.collectionPath,
                 embed: opts.embed,
                 force: opts.force,
-                embeddingProvider: config.embeddingProvider,
-                embeddingModel: config.embeddingModel,
+                embeddingProvider: embedding.provider,
+                embeddingModel: embedding.model,
+                embeddingDescriptor: embedding.descriptor,
+                embeddingDimensions: embedding.dimensions,
+                embeddingContext: embedding.context,
+                embeddingContextLength: embedding.contextLength,
+                embeddingContextTokens: embedding.contextTokens,
+                embeddingMrlDim: embedding.mrlDim,
+                embeddingNormalization: embedding.normalization,
+                embeddingPrefixScheme: embedding.prefixScheme,
+                onGenerationSwapPrepare: () => {
+                    // Close the long-lived assembly handle before the active
+                    // generation's WAL/SHM sidecars are removed.
+                    swapHandleClosed = true;
+                    activeStore.close();
+                },
+                onGenerationSwapComplete: () => {
+                    if (!swapHandleClosed)
+                        return;
+                    activeStore = openEngineStore(dbPath, provider.dimensions);
+                    deps.store = activeStore;
+                    swapHandleClosed = false;
+                },
             });
             return {
                 scanned: result.scanned,
@@ -64,13 +203,15 @@ export function assembleEngine(config) {
                 skipped: result.skipped,
                 available: result.available,
                 reason: result.reason,
+                generationSwapped: result.generationSwapped,
             };
         },
         async dispose() {
             await provider.dispose().catch(() => undefined);
-            store.close();
+            activeStore.close();
         },
     };
+    return assembled;
 }
 /**
  * Assemble a CORE-ONLY semantic engine.
@@ -88,6 +229,7 @@ export function assembleCoreSemanticEngine(config) {
         store,
         embed: provider,
         ...(config.rrfK !== undefined ? { rrfK: config.rrfK } : {}),
+        ...(config.policy !== undefined ? { policy: config.policy } : {}),
         ...(config.graphDepth !== undefined ? { graphDepth: config.graphDepth } : {}),
     };
     const adapter = new McpEngineAdapter(deps, vault, {
@@ -137,12 +279,13 @@ export function assembleEphemeralCoreSemanticEngine(config) {
         store,
         embed: provider,
         ...(config.rrfK !== undefined ? { rrfK: config.rrfK } : {}),
+        ...(config.policy !== undefined ? { policy: config.policy } : {}),
         ...(config.graphDepth !== undefined ? { graphDepth: config.graphDepth } : {}),
     };
     const adapter = new McpEngineAdapter(deps, vault, {
         embeddingProvider: config.embeddingProvider,
         embeddingModel: config.embeddingModel,
-    }, config.reranker, true);
+    }, config.reranker, true, false);
     return {
         adapter,
         deps,
@@ -191,6 +334,7 @@ export function assembleCoreSemanticEngineReadOnly(config) {
         store,
         embed: provider,
         ...(config.rrfK !== undefined ? { rrfK: config.rrfK } : {}),
+        ...(config.policy !== undefined ? { policy: config.policy } : {}),
         ...(config.graphDepth !== undefined ? { graphDepth: config.graphDepth } : {}),
     };
     const adapter = new McpEngineAdapter(deps, vault, {
@@ -219,16 +363,44 @@ export function assembleCoreSemanticEngineReadOnly(config) {
 export function assembleEngineReadOnly(config) {
     const vault = config.vault;
     const dbPath = config.dbPath ?? `${vault}/.oms/engine-store.sqlite`;
+    const embedding = resolvedEmbeddingConfig(config);
     // The readonly store opener does not use dimensions. Open it before loading
     // the configured provider so an absent index is always an unavailable result.
     const store = openEngineStoreReadOnly(dbPath, 0);
     if (store === null)
         return null;
+    let configuredIdentity;
+    try {
+        configuredIdentity = makeEmbeddingIdentity({
+            provider: embedding.provider ?? "",
+            model: embedding.model ?? "",
+            dimensions: embedding.dimensions ?? 0,
+            contextLength: embedding.contextLength ?? embedding.contextTokens ?? embedding.context ?? 0,
+            mrlDim: embedding.mrlDim ?? -1,
+            normalization: embedding.normalization ?? "",
+            prefixScheme: embedding.prefixScheme ?? "",
+        });
+        const storedIdentity = store.readEmbeddingIdentity();
+        if (storedIdentity !== null && !embeddingIdentitiesMatch(storedIdentity, configuredIdentity)) {
+            throw new Error(`Embedding identity mismatch for read-only store: stored ${storedIdentity.provider}/${storedIdentity.model} does not match configured ${configuredIdentity.provider}/${configuredIdentity.model}.`);
+        }
+    }
+    catch (error) {
+        store.close();
+        throw error;
+    }
     let provider;
     try {
         provider = requireRealEmbeddingProvider({
-            provider: config.embeddingProvider,
-            model: config.embeddingModel,
+            provider: embedding.provider,
+            model: embedding.model,
+            dimensions: embedding.dimensions,
+            context: embedding.context,
+            contextLength: embedding.contextLength,
+            contextTokens: embedding.contextTokens,
+            mrlDim: embedding.mrlDim,
+            normalization: embedding.normalization,
+            prefixScheme: embedding.prefixScheme,
         });
     }
     catch (error) {
@@ -239,11 +411,21 @@ export function assembleEngineReadOnly(config) {
         store,
         embed: provider,
         ...(config.rrfK !== undefined ? { rrfK: config.rrfK } : {}),
+        ...(config.policy !== undefined ? { policy: config.policy } : {}),
         ...(config.graphDepth !== undefined ? { graphDepth: config.graphDepth } : {}),
     };
     const adapter = new McpEngineAdapter(deps, vault, {
-        embeddingProvider: config.embeddingProvider,
-        embeddingModel: config.embeddingModel,
+        embeddingProvider: embedding.provider,
+        embeddingModel: embedding.model,
+        embeddingDescriptor: embedding.descriptor,
+        embeddingDimensions: embedding.dimensions,
+        embeddingContext: embedding.context,
+        embeddingContextLength: embedding.contextLength,
+        embeddingContextTokens: embedding.contextTokens,
+        embeddingMrlDim: embedding.mrlDim,
+        embeddingNormalization: embedding.normalization,
+        embeddingPrefixScheme: embedding.prefixScheme,
+        dbPath,
     }, config.reranker, false);
     return {
         adapter,
@@ -272,6 +454,7 @@ export function assembleGraphOnlyEngine(config) {
         store,
         embed: provider,
         ...(config.rrfK !== undefined ? { rrfK: config.rrfK } : {}),
+        ...(config.policy !== undefined ? { policy: config.policy } : {}),
         ...(config.graphDepth !== undefined ? { graphDepth: config.graphDepth } : {}),
     };
     const adapter = new McpEngineAdapter(deps, vault, undefined, config.reranker, false);

package/dist/kernel/engine/assemble.js.map

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package/dist/kernel/engine/axes/store.d.ts

@@ -0,0 +1,90 @@
+export type AxisKind = "folder" | "field" | "link";
+export type AxisValueType = "string" | "number" | "boolean" | "date";
+export type AxisValue = string | number | boolean | Date;
+export interface AxisObservation {
+    readonly notePath: string;
+    readonly axisKind: AxisKind;
+    readonly axisKey: string;
+    readonly value: AxisValue;
+    readonly valueType: AxisValueType;
+    /** Canonical lookup value; strings are trimmed and case-folded. */
+    readonly normalizedValue: string;
+    readonly count: number;
+}
+export interface AxisObservationInput {
+    readonly notePath: string;
+    readonly axisKind?: AxisKind;
+    readonly axisKey: string;
+    readonly value: unknown;
+}
+export interface AxisFacet {
+    readonly axisKind: AxisKind;
+    readonly axisKey: string;
+    readonly value: AxisValue;
+    readonly valueType: AxisValueType;
+    readonly normalizedValue: string;
+    readonly count: number;
+}
+export declare function normalizeAxisValue(value: AxisValue): {
+    readonly value: AxisValue;
+    readonly type: AxisValueType;
+    readonly normalizedValue: string;
+};
+/** Dedicated EAV repository; never shares the embedding engine database. */
+export declare class AxisObservationStore {
+    readonly dbPath: string;
+    private readonly db;
+    private closed;
+    private transactionDepth;
+    constructor(dbPath: string, options?: {
+        readonly readonly?: boolean;
+        readonly readOnly?: boolean;
+    });
+    private ensureOpen;
+    /**
+     * Run a group of writes as one rollback-safe publication. Nested writes from
+     * record/replaceNote participate in the outer transaction rather than
+     * attempting to open a second SQLite transaction.
+     */
+    runInTransaction<T>(fn: () => T): T;
+    private insertValues;
+    /** Source signature of the markdown set used for the last reconciliation. */
+    sourceSignature(): string | null;
+    setSourceSignature(signature: string): void;
+    /** Record one scalar or every scalar in a frontmatter list. */
+    record(input: AxisObservationInput): void;
+    /** Remove all observations for a note, then atomically replace them. */
+    replaceNote(notePath: string, fields: Readonly<Record<string, unknown>>, options?: {
+        readonly folder?: string;
+        readonly links?: readonly string[];
+    }): void;
+    /** Delete stale observations when a markdown note is removed. */
+    deleteNote(notePath: string): void;
+    list(options?: {
+        readonly axisKind?: AxisKind;
+        readonly axisKey?: string;
+        readonly notePath?: string;
+    }): AxisObservation[];
+    /** Aggregate facets before any result limit is applied. */
+    facets(options?: {
+        readonly axisKind?: AxisKind;
+        readonly axisKey?: string;
+    }): AxisFacet[];
+    count(options?: {
+        readonly axisKind?: AxisKind;
+        readonly axisKey?: string;
+    }): number;
+    close(): void;
+}
+export declare const openAxisStore: (dbPath: string, options?: {
+    readonly readonly?: boolean;
+    readonly readOnly?: boolean;
+}) => AxisObservationStore;
+export declare function axisStorePath(vault: string): string;
+export declare function openVaultAxisStore(vault: string, options?: {
+    readonly readonly?: boolean;
+    readonly readOnly?: boolean;
+}): AxisObservationStore;
+/** Scan markdown into the dedicated EAV cache. Malformed YAML is loud. */
+export declare function collectVaultAxisObservations(vault: string, suppliedStore?: AxisObservationStore): Promise<AxisObservationStore>;
+export declare function ensureAxisStoreDirectory(vault: string): Promise<void>;