oh-my-second-brain 0.2.0 → 0.3.0

package/dist/cli/oms.js

@@ -2,11 +2,11 @@
 import { realpathSync } from "node:fs";
 import path from "node:path";
 import { fileURLToPath } from "node:url";
-import { runPostToolUse } from "../hook/post-tool-use.js";
-import { runPreToolUse } from "../hook/pre-tool-use.js";
-import { resolveEffectiveVault } from "../link/link.js";
+import { runPostToolUse } from "../vendors/claude/hook/post-tool-use.js";
+import { runPreToolUse } from "../vendors/claude/hook/pre-tool-use.js";
+import { resolveEffectiveVault } from "../kernel/link/link.js";
 import { runMcpServer } from "../mcp/server.js";
-import { resolveBundledAssetPaths } from "../core/runtime/assets.js";
+import { resolveBundledAssetPaths } from "../kernel/runtime/assets.js";
 import { parseCliArgs } from "./args.js";
 import { runAudit } from "./audit.js";
 import { runDoctor, runLint } from "./doctor-lint.js";
@@ -57,9 +57,11 @@ async function main() {
         vault = (await resolveEffectiveVault(process.cwd(), process.env)).vault;
     }
     if (command === "setup") {
-        await runSetup({ vault, yes, installClaude, suggestFields });
-        await nonFatalGlobalWriteback(() => registerGlobalVault({ vault: path.resolve(vault), homeDir: undefined, overwrite: true }));
-        await maybePrintUpdateNotice();
+        await runSetup({ vault, yes, installClaude, suggestFields, dryRun });
+        if (!dryRun)
+            await nonFatalGlobalWriteback(() => registerGlobalVault({ vault: path.resolve(vault), homeDir: undefined, overwrite: true }));
+        if (!dryRun)
+            await maybePrintUpdateNotice();
     }
     else if (command === "link") {
         process.exitCode = await runLink({
@@ -135,10 +137,19 @@ async function main() {
             process.exitCode = 1;
         }
     }
-    else {
+    else if (command === undefined) {
+        // No command at all is a request for help, not an error.
         printUsage();
         process.exitCode = 0;
     }
+    else {
+        // An unrecognised command must fail. Printing usage and exiting 0 makes a
+        // typo look like success, and makes a removed command indistinguishable
+        // from a working one - which is how the retired qmd aliases went unnoticed.
+        console.error(`[oms] Unknown command: ${command}`);
+        printUsage();
+        process.exitCode = 1;
+    }
     function hostContext() {
         return {
             vault,
@@ -152,7 +163,7 @@ async function main() {
             checkUpdate,
             timeoutMs,
             unknownFlags,
-            adapterRoot: bundledAssets.adapterRoot,
+            adapterRoot: bundledAssets.packageRoot,
         };
     }
 }

package/dist/cli/oms.js.map

@@ -1 +1 @@
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package/dist/cli/semantic-args.d.ts

@@ -1,4 +1,4 @@
-import type { SemanticQueryOptions, SemanticSearchMode } from "../retrieve/semantic-contract.js";
+import type { SemanticQueryOptions, SemanticSearchMode } from "../kernel/search/semantic-contract.js";
 export interface ParsedSemanticArgs {
     readonly positional: readonly string[];
     readonly options: Readonly<Record<string, string | boolean>>;

package/dist/cli/semantic-http.js

@@ -1,7 +1,7 @@
 import { createServer } from "node:http";
-import { assembleSemanticEngine } from "../mcp/semantic-engine.js";
-import { handleSemanticTool } from "../mcp/semantic-retrieve.js";
-import { semanticMcpTools } from "../mcp/semantic-schemas.js";
+import { assembleSemanticEngine } from "../kernel/semantic/semantic-engine.js";
+import { handleSemanticTool } from "../kernel/semantic/semantic-retrieve.js";
+import { semanticMcpTools } from "../kernel/semantic/semantic-schemas.js";
 function safeHost(host) {
     const selected = host?.trim() || "127.0.0.1";
     if (selected !== "127.0.0.1" && selected !== "localhost" && selected !== "::1") {

package/dist/cli/semantic-http.js.map

@@ -1 +1 @@
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+{"version":3,"file":"semantic-http.js","sourceRoot":"","sources":["../../src/cli/semantic-http.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAA0D,MAAM,WAAW,CAAC;AAGjG,OAAO,EAAE,sBAAsB,EAAE,MAAM,uCAAuC,CAAC;AAE/E,OAAO,EAAE,kBAAkB,EAAE,MAAM,yCAAyC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,wCAAwC,CAAC;AAoB1E,SAAS,QAAQ,CAAC,IAAwB;IACxC,MAAM,QAAQ,GAAG,IAAI,EAAE,IAAI,EAAE,IAAI,WAAW,CAAC;IAC7C,IAAI,QAAQ,KAAK,WAAW,IAAI,QAAQ,KAAK,WAAW,IAAI,QAAQ,KAAK,KAAK,EAAE,CAAC;QAC/E,MAAM,IAAI,KAAK,CAAC,0EAA0E,CAAC,CAAC;IAC9F,CAAC;IACD,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,SAAS,QAAQ,CAAC,QAAwB,EAAE,MAAc,EAAE,KAAc;IACxE,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,EAAE,cAAc,EAAE,iCAAiC,EAAE,CAAC,CAAC;IAClF,QAAQ,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AAC7C,CAAC;AAED,KAAK,UAAU,YAAY,CAAC,OAAwB;IAClD,MAAM,MAAM,GAAG,EAAE,CAAC;IAClB,IAAI,KAAK,EAAE,MAAM,KAAK,IAAI,OAAO;QAAE,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IACpG,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACnC,OAAO,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAY,CAAC;AACxE,CAAC;AAED,SAAS,QAAQ,CAAC,KAAc;IAC9B,OAAO,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,IAAI,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;AAC9E,CAAC;AAED,SAAS,WAAW,CAAC,KAA8B,EAAE,GAAW;IAC9D,MAAM,KAAK,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC;IACzB,OAAO,OAAO,KAAK,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC;AACvD,CAAC;AAED,SAAS,WAAW,CAAC,KAA8B,EAAE,GAAW;IAC9D,MAAM,KAAK,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC;IACzB,OAAO,OAAO,KAAK,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAC;AACvD,CAAC;AAED,SAAS,YAAY,CAAC,GAAiB,EAAE,IAAwB,EAAE,IAAa;IAC9E,MAAM,MAAM,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;IAC1C,OAAO;QACL,KAAK,EAAE,GAAG,CAAC,KAAK;QAChB,KAAK,EAAE,GAAG,CAAC,KAAK;QAChB,IAAI;QACJ,KAAK,EAAE,WAAW,CAAC,MAAM,EAAE,OAAO,CAAC,IAAI,EAAE;QACzC,UAAU,EAAE,WAAW,CAAC,MAAM,EAAE,YAAY,CAAC;QAC7C,KAAK,EAAE,WAAW,CAAC,MAAM,EAAE,OAAO,CAAC;QACnC,QAAQ,EAAE,WAAW,CAAC,MAAM,EAAE,UAAU,CAAC;QACzC,MAAM,EAAE,WAAW,CAAC,MAAM,EAAE,QAAQ,CAAC;QACrC,GAAG,EAAE,WAAW,CAAC,MAAM,EAAE,KAAK,CAAC;QAC/B,GAAG,EAAE,WAAW,CAAC,MAAM,EAAE,KAAK,CAAC;QAC/B,IAAI,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC;KAClC,CAAC;AACJ,CAAC;AAED,KAAK,UAAU,gBAAgB,CAAC,GAAiB,EAAE,IAAa;IAC9D,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC;QAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,EAAE,CAAC;IAC/G,MAAM,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC;IAC9B,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;IAC3C,IAAI,MAAM,KAAK,YAAY,EAAE,CAAC;QAC5B,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,gBAAgB,EAAE,EAAE,CAAC;IACrE,CAAC;IACD,IAAI,MAAM,KAAK,YAAY,IAAI,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC;QACxD,MAAM,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC9B,MAAM,IAAI,GAAG,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACzC,MAAM,IAAI,GAAG,QAAQ,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;YACxC,CAAC,CAAC,EAAE,GAAG,MAAM,CAAC,WAAW,CAAC,EAAE,KAAK,EAAE,WAAW,CAAC,MAAM,CAAC,WAAW,CAAC,EAAE,OAAO,CAAC,IAAI,GAAG,CAAC,KAAK,EAAE;YAC3F,CAAC,CAAC,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;QACzB,IAAI,CAAC,IAAI;YAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,oBAAoB,EAAE,EAAE,CAAC;QACjG,MAAM,MAAM,GAAG,MAAM,kBAAkB,CAAC,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAC;QAC5E,IAAI,CAAC,MAAM;YAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,8BAA8B,IAAI,EAAE,EAAE,EAAE,CAAC;QACnH,OAAO,MAAM,CAAC,EAAE;YACd,CAAC,CAAC,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,EAAE;YAC9C,CAAC,CAAC,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,EAAE,CAAC;IAC/E,CAAC;IACD,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,wCAAwC,MAAM,IAAI,EAAE,EAAE,EAAE,EAAE,CAAC;AAC1H,CAAC;AAED,KAAK,UAAU,YAAY,CAAC,GAAiB,EAAE,OAAwB,EAAE,QAAwB;IAC/F,MAAM,QAAQ,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,GAAG,IAAI,GAAG,EAAE,kBAAkB,CAAC,CAAC,QAAQ,CAAC;IAC1E,IAAI,CAAC;QACH,IAAI,OAAO,CAAC,MAAM,KAAK,KAAK,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;YACvD,MAAM,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,cAAc,CAAC,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC,CAAC;YAClF,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE;gBACtB,EAAE,EAAE,MAAM,CAAC,SAAS;gBACpB,OAAO,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,iBAAiB;gBAC9D,MAAM;aACP,CAAC,CAAC;YACH,OAAO;QACT,CAAC;QACD,IAAI,OAAO,CAAC,MAAM,KAAK,MAAM,IAAI,CAAC,QAAQ,KAAK,QAAQ,IAAI,QAAQ,KAAK,SAAS,CAAC,EAAE,CAAC;YACnF,MAAM,IAAI,GAAG,MAAM,YAAY,CAAC,OAAO,CAAC,CAAC;YACzC,MAAM,IAAI,GAAG,QAAQ,KAAK,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC;YACzD,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,GAAG,CAAC,OAAO,CAAC,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC;YACxF,OAAO;QACT,CAAC;QACD,IAAI,OAAO,CAAC,MAAM,KAAK,MAAM,IAAI,QAAQ,KAAK,MAAM,EAAE,CAAC;YACrD,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,gBAAgB,CAAC,GAAG,EAAE,MAAM,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;YAClF,OAAO;Q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package/dist/cli/semantic-usage.js

@@ -15,6 +15,6 @@ export function semanticUsageText() {
 Embeddings are explicit: set OMS_EMBEDDING_PROVIDER (gguf|upstage) and OMS_EMBEDDING_MODEL.
 Without them, lexical search and document reads work; vector/HyDE fail fast.
 
-Compatibility aliases: oms query|search|vsearch|get|multi-get|status|embed|collection|context|cleanup`;
+Top-level semantic commands: oms search|embed|collection|context|cleanup|serve|http`;
 }
 //# sourceMappingURL=semantic-usage.js.map

package/dist/cli/semantic-usage.js.map

@@ -1 +1 @@
-{"version":3,"file":"semantic-usage.js","sourceRoot":"","sources":["../../src/cli/semantic-usage.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,iBAAiB;IAC/B,OAAO;;;;;;;;;;;;;;;;sGAgB6F,CAAC;AACvG,CAAC"}
+{"version":3,"file":"semantic-usage.js","sourceRoot":"","sources":["../../src/cli/semantic-usage.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,iBAAiB;IAC/B,OAAO;;;;;;;;;;;;;;;;oFAgB2E,CAAC;AACrF,CAAC"}

package/dist/cli/semantic.js

@@ -1,15 +1,10 @@
-import { assembleSemanticEngine } from "../mcp/semantic-engine.js";
+import { assembleSemanticEngine } from "../kernel/semantic/semantic-engine.js";
 import { booleanOption, numberOption, parseSemanticArgs, printJson, semanticQueryOptions, stringOption, targetList, } from "./semantic-args.js";
 import { startSemanticHttpServer } from "./semantic-http.js";
 import { semanticUsageText } from "./semantic-usage.js";
 const TOP_LEVEL_COMMANDS = new Set([
     "semantic",
-    "query",
     "search",
-    "vsearch",
-    "get",
-    "multi-get",
-    "status",
     "embed",
     "collection",
     "context",

package/dist/cli/semantic.js.map

@@ -1 +1 @@
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+{"version":3,"file":"semantic.js","sourceRoot":"","sources":["../../src/cli/semantic.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,sBAAsB,EAAE,MAAM,uCAAuC,CAAC;AAC/E,OAAO,EACL,aAAa,EACb,YAAY,EACZ,iBAAiB,EACjB,SAAS,EACT,oBAAoB,EACpB,YAAY,EACZ,UAAU,GACX,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,uBAAuB,EAAE,MAAM,oBAAoB,CAAC;AAC7D,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AASxD,MAAM,kBAAkB,GAAG,IAAI,GAAG,CAAC;IACjC,UAAU;IACV,QAAQ;IACR,OAAO;IACP,YAAY;IACZ,SAAS;IACT,SAAS;IACT,OAAO;IACP,MAAM;CACP,CAAC,CAAC;AAEH,MAAM,UAAU,oBAAoB,CAAC,OAA2B;IAC9D,OAAO,OAAO,KAAK,SAAS,IAAI,kBAAkB,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;AAClE,CAAC;AAED,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,gGAAgG;AAChG,KAAK,UAAU,mBAAmB,CAAI,KAAa,EAAE,EAA6C;IAChG,MAAM,MAAM,GAAG,sBAAsB,CAAC,KAAK,CAAC,CAAC;IAC7C,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAClC,CAAC;YAAS,CAAC;QACT,MAAM,MAAM,CAAC,OAAO,EAAE,CAAC;IACzB,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,OAA8B;IACjE,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,IAAI,CAAC,CAAC,OAAe,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC;IAC3E,MAAM,UAAU,GAAG,OAAO,CAAC,UAAU,IAAI,CAAC,CAAC,OAAe,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;IACvF,MAAM,MAAM,GAAG,iBAAiB,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAC/C,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,UAAU,CAAC,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;IAClG,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAClE,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;IACpD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC;IAE5B,IAAI,CAAC,OAAO,IAAI,OAAO,KAAK,MAAM,EAAE,CAAC;QACnC,KAAK,CAAC,iBAAiB,EAAE,CAAC,CAAC;QAC3B,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,OAAO,KAAK,OAAO,IAAI,OAAO,KAAK,MAAM,EAAE,CAAC;QAC9C,MAAM,MAAM,GAAG,MAAM,uBAAuB,CAAC;YAC3C,KAAK;YACL,IAAI,EAAE,YAAY,CAAC,MAAM,EAAE,MAAM,CAAC;YAClC,IAAI,EAAE,YAAY,CAAC,MAAM,EAAE,MAAM,CAAC,IAAI,IAAI;YAC1C,KAAK,EAAE,YAAY,CAAC,MAAM,EAAE,OAAO,CAAC;SACrC,CAAC,CAAC;QACH,SAAS,CAAC,KAAK,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC;QACvD,MAAM,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,SAAS,CAAC,CAAC;QACnC,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,OAAO,KAAK,MAAM,IAAI,OAAO,KAAK,QAAQ,IAAI,OAAO,KAAK,OAAO,EAAE,CAAC;QACtE,OAAO,mBAAmB,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAClD,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC;gBAC1C,KAAK;gBACL,UAAU,EAAE,YAAY,CAAC,MAAM,EAAE,YAAY,CAAC;gBAC9C,KAAK,EAAE,YAAY,CAAC,MAAM,EAAE,OAAO,CAAC;gBACpC,KAAK,EAAE,aAAa,CAAC,MAAM,EAAE,OAAO,CAAC;gBACrC,KAAK,EAAE,aAAa,CAAC,MAAM,EAAE,OAAO,CAAC;gBACrC,aAAa,EAAE,YAAY,CAAC,MAAM,EAAE,eAAe,CAAC;gBACpD,eAAe,EAAE,YAAY,CAAC,MAAM,EAAE,iBAAiB,CAAC;gBACxD,UAAU,EAAE,YAAY,CAAC,MAAM,EAAE,YAAY,CAAC;aAC/C,CAAC,CAAC;YACH,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;QACzB,OAAO,mBAAmB,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,EAAE;YAC5C,MAAM,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACvF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACnD,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;QAC1B,OAAO,mBAAmB,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAClD,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACtF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,OAAO,IAAI,OAAO,KAAK,QAAQ,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;QACzE,MAAM,IAAI,GAAG,OAAO,KAAK,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC;QAC3F,OAAO,mBAAmB,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAClD,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,aAAa,CAAC,oBAAoB,CAAC,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;YACtG,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,KAAK;QAAE,OAAO,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;IACpF,IAAI,OAAO,KAAK,WAAW;QAAE,OAAO,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;IAC/F,IAAI,OAAO,KAAK,YAAY;QAAE,OAAO,oBAAoB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;IAClG,IAAI,OAAO,KAAK,SAAS;QAAE,OAAO,iBAAiB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;IAEnF,UAAU,CAAC,iBAAiB,EAAE,CAAC,CAAC;IAChC,OAAO,CAAC,CAAC;AACX,CAAC;AAED,KAAK,UAAU,aAAa,CAC1B,IAAuB,EACvB,MAA4C,EAC5C,KAAa,EACb,KAAgC,EAChC,UAAqC;IAErC,MAAM,MAAM,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;IACvB,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,UAAU,CAAC,kCAAkC,CAAC,CAAC;QAC/C,OAAO,CAAC,CAAC;IACX,CAAC;IACD,OAAO,mBAAmB,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;QAClD,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,WAAW,CAAC;YACvC,KAAK;YACL,MAAM;YACN,UAAU,EAAE,YAAY,CAAC,MAAM,EAAE,YAAY,CAAC;YAC9C,QAAQ,EA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package/dist/cli/setup-command.d.ts

@@ -7,5 +7,6 @@ export declare function runSetup(opts: {
     yes: boolean;
     installClaude?: boolean;
     suggestFields?: boolean;
+    dryRun?: boolean;
     prompt?: SetupPrompt;
 }): Promise<void>;

package/dist/cli/setup-command.js

@@ -1,85 +1,42 @@
-import { copyFile, mkdir, readFile, readdir, writeFile } from "node:fs/promises";
-import path from "node:path";
 import { createInterface } from "node:readline/promises";
-import { stringify as yamlStringify } from "yaml";
-import { loadOntology } from "../core/ontology/loader.js";
-import { resolveBundledAssetPaths } from "../core/runtime/assets.js";
-import { collectObservedFields, mergeObservedFieldsIntoConcept, parseLensDefinitions, } from "../setup/axis.js";
-import { buildClaudeInstallPlan, printClaudeInstallPlan, } from "./claude-install-plan.js";
-import { buildPromptConcepts, conceptRefToPromptDefault, defaultConceptForFolder, isFieldType, mergeAdditionalFields, mergeAdditionalLenses, readConceptDocuments, readExistingTaxonomy, writeConcept, } from "./setup-documents.js";
+import path from "node:path";
+import { resolveBundledAssetPaths } from "../kernel/runtime/assets.js";
+import { parseLensDefinitions } from "../kernel/setup/axis.js";
+import { applySetup, decideNonInteractiveSetup, decideSetup, defaultSetupBinding, inspectSetup, } from "../kernel/setup/service.js";
+import { isFieldType } from "../kernel/setup/documents.js";
+import { buildClaudeInstallPlan, printClaudeInstallPlan } from "./claude-install-plan.js";
 const bundledAssets = resolveBundledAssetPaths();
-function bundledOntologyDir() {
-    return bundledAssets.ontologyDir;
-}
-function humanize(name) {
-    return name.charAt(0).toUpperCase() + name.slice(1);
-}
 export async function runSetup(opts) {
-    const { vault, yes, installClaude = false, suggestFields = false } = opts;
+    const { vault, yes, installClaude = false, suggestFields = false, dryRun = false } = opts;
     const nonInteractive = yes || process.env["OMS_NON_INTERACTIVE"] === "1";
-    const ontologyDir = bundledOntologyDir();
-    const ontology = await loadOntology(ontologyDir);
-    const observedSummaries = await collectObservedFields({ vault });
-    const observedByFolder = new Map(observedSummaries.map((summary) => [summary.folder, summary]));
-    const topEntries = await readdir(vault, { withFileTypes: true });
-    const folders = topEntries
-        .filter((entry) => entry.isDirectory() && !entry.name.startsWith("."))
-        .map((entry) => entry.name);
-    const omsDir = path.join(vault, ".oms");
-    const existingTaxonomy = await readExistingTaxonomy(omsDir);
-    const existingConceptDocuments = await readConceptDocuments(omsDir);
-    const promptConcepts = buildPromptConcepts(ontology.concepts, existingConceptDocuments);
-    const folderBindings = { ...(existingTaxonomy?.folders ?? {}) };
-    const observedFieldsByConcept = new Map();
-    const interactiveFieldsByConcept = new Map();
-    const interactiveLensesByConcept = new Map();
+    const state = await inspectSetup({ vault, ontologyDir: bundledAssets.ontologyDir });
+    let decision;
     if (nonInteractive) {
-        for (const folder of folders) {
-            const existing = folderBindings[folder];
-            const conceptName = conceptRefToPromptDefault(existing?.concept ?? null) ??
-                defaultConceptForFolder(promptConcepts, folder);
-            folderBindings[folder] = {
-                intent: existing?.intent || humanize(folder),
-                concept: conceptName,
-            };
-            if (suggestFields && conceptName !== null) {
-                const summary = observedByFolder.get(folder);
-                if (summary !== undefined) {
-                    observedFieldsByConcept.set(conceptName, [
-                        ...(observedFieldsByConcept.get(conceptName) ?? []),
-                        ...summary.fields,
-                    ]);
-                }
-            }
-        }
+        decision = decideNonInteractiveSetup(state, suggestFields);
     }
     else {
-        const rl = opts.prompt ??
-            createInterface({
-                input: process.stdin,
-                output: process.stdout,
-            });
-        const conceptNames = Array.from(promptConcepts.keys());
+        const rl = opts.prompt ?? createInterface({ input: process.stdin, output: process.stdout });
+        const folderBindings = { ...(state.existingTaxonomy?.folders ?? {}) };
+        const interactiveFieldsByConcept = new Map();
+        const interactiveLensesByConcept = new Map();
+        const conceptNames = Array.from(state.promptConcepts.keys());
         try {
             console.log("\nOh My Second Brain Setup — adopting existing vault folders.\n");
             console.log(`Available concepts: ${conceptNames.join(", ") || "(none)"}\n`);
-            for (const folder of folders) {
-                const existing = folderBindings[folder];
-                const defaultIntent = existing?.intent || humanize(folder);
-                const rawIntent = await rl.question(`Folder "${folder}" — intent [${defaultIntent}]: `);
-                const intent = rawIntent.trim() || defaultIntent;
-                const defaultConcept = conceptRefToPromptDefault(existing?.concept ?? null) ??
-                    defaultConceptForFolder(promptConcepts, folder);
+            for (const folder of state.folders) {
+                const defaults = defaultSetupBinding(state, folder);
+                const rawIntent = await rl.question(`Folder "${folder}" — intent [${defaults.intent}]: `);
+                const intent = rawIntent.trim() || defaults.intent;
+                const defaultConcept = typeof defaults.concept === "string" ? defaults.concept : null;
                 const conceptPrompt = defaultConcept
                     ? `  Bind concept [${defaultConcept}] (blank = ${defaultConcept}, "null" = none): `
                     : `  Bind concept (${conceptNames.join("/") || "none"}, blank = none): `;
-                const rawConcept = await rl.question(conceptPrompt);
-                const trimmed = rawConcept.trim();
+                const trimmed = (await rl.question(conceptPrompt)).trim();
                 let conceptName;
                 if (trimmed === "null" || trimmed === "") {
                     conceptName = trimmed === "null" ? null : (defaultConcept ?? null);
                 }
-                else if (promptConcepts.has(trimmed)) {
+                else if (state.promptConcepts.has(trimmed)) {
                     conceptName = trimmed;
                 }
                 else {
@@ -87,106 +44,44 @@ export async function runSetup(opts) {
                     conceptName = null;
                 }
                 folderBindings[folder] = { intent, concept: conceptName };
-                const summary = observedByFolder.get(folder);
+                const summary = state.observedByFolder.get(folder);
                 if (summary !== undefined && summary.fields.length > 0 && conceptName !== null) {
-                    const observedNames = summary.fields.map((field) => `${field.name}:${field.type}`).join(", ");
-                    console.log(`  Observed fields: ${observedNames}`);
-                    for (const warning of summary.warnings) {
+                    console.log(`  Observed fields: ${summary.fields.map((field) => `${field.name}:${field.type}`).join(", ")}`);
+                    for (const warning of summary.warnings)
                         console.warn(`  Frontmatter warning: ${warning}`);
-                    }
-                    const rawFields = await rl.question("  Add observed fields (comma-separated names, blank = none): ");
-                    const requested = new Set(rawFields
-                        .split(",")
-                        .map((field) => field.trim())
-                        .filter((field) => field.length > 0));
+                    const requested = new Set((await rl.question("  Add observed fields (comma-separated names, blank = none): ")).split(",").map((field) => field.trim()).filter(Boolean));
                     const selected = [];
                     for (const observed of summary.fields) {
                         if (!requested.has(observed.name))
                             continue;
                         const rawType = await rl.question(`    Field "${observed.name}" type [${observed.type}]: `);
-                        const trimmedType = rawType.trim();
-                        const fieldType = isFieldType(trimmedType) ? trimmedType : observed.type;
                         const rawRequired = await rl.question(`    Field "${observed.name}" required? [n]: `);
                         const rawFieldIntent = await rl.question(`    Field "${observed.name}" intent [Observed ${observed.name}]: `);
-                        selected.push({
-                            name: observed.name,
-                            type: fieldType,
-                            required: /^y(?:es)?$/i.test(rawRequired.trim()),
-                            intent: rawFieldIntent.trim() || `Observed ${observed.name}`,
-                        });
-                    }
-                    if (selected.length > 0) {
-                        interactiveFieldsByConcept.set(conceptName, [
-                            ...(interactiveFieldsByConcept.get(conceptName) ?? []),
-                            ...selected,
-                        ]);
-                    }
-                    const knownFields = new Set([
-                        ...Array.from(promptConcepts.get(conceptName)?.fields ?? []).map((field) => field.name),
-                        ...selected.map((field) => field.name),
-                    ]);
-                    const rawLenses = await rl.question("  Retrieval lenses (name:field1,field2; blank = none): ");
-                    const lenses = parseLensDefinitions(rawLenses, knownFields);
-                    if (lenses.length > 0) {
-                        interactiveLensesByConcept.set(conceptName, [
-                            ...(interactiveLensesByConcept.get(conceptName) ?? []),
-                            ...lenses,
-                        ]);
+                        const requestedType = rawType.trim();
+                        selected.push({ name: observed.name, type: isFieldType(requestedType) ? requestedType : observed.type, required: /^y(?:es)?$/i.test(rawRequired.trim()), intent: rawFieldIntent.trim() || `Observed ${observed.name}` });
                     }
+                    if (selected.length > 0)
+                        interactiveFieldsByConcept.set(conceptName, [...(interactiveFieldsByConcept.get(conceptName) ?? []), ...selected]);
+                    const knownFields = new Set([...(state.promptConcepts.get(conceptName)?.fields ?? []).map((field) => field.name), ...selected.map((field) => field.name)]);
+                    const lenses = parseLensDefinitions(await rl.question("  Retrieval lenses (name:field1,field2; blank = none): "), knownFields);
+                    if (lenses.length > 0)
+                        interactiveLensesByConcept.set(conceptName, [...(interactiveLensesByConcept.get(conceptName) ?? []), ...lenses]);
                 }
             }
         }
         finally {
             rl.close();
         }
+        decision = decideSetup(state, { folderBindings, additionalFieldsByConcept: interactiveFieldsByConcept, additionalLensesByConcept: interactiveLensesByConcept });
     }
-    const taxonomy = { version: existingTaxonomy?.version ?? 0, folders: folderBindings };
-    const conceptsOutDir = path.join(omsDir, "concepts");
-    await mkdir(conceptsOutDir, { recursive: true });
-    await writeFile(path.join(omsDir, "taxonomy.yaml"), yamlStringify(taxonomy), "utf-8");
-    const conceptsSourceDir = path.join(ontologyDir, "concepts");
-    let copiedFiles = [];
-    try {
-        const conceptFiles = await readdir(conceptsSourceDir);
-        for (const file of conceptFiles) {
-            if (file.endsWith(".yaml") || file.endsWith(".yml")) {
-                const target = path.join(conceptsOutDir, file);
-                try {
-                    await readFile(target, "utf-8");
-                }
-                catch (error) {
-                    if (!(error instanceof Error))
-                        throw error;
-                    await copyFile(path.join(conceptsSourceDir, file), target);
-                    copiedFiles.push(file);
-                }
-            }
-        }
-    }
-    catch (err) {
-        console.warn("[oms] Could not copy concept files:", err);
-    }
-    const localOntology = await loadOntology(omsDir);
-    const localConceptDocuments = await readConceptDocuments(omsDir);
-    const conceptNamesToUpdate = new Set([
-        ...observedFieldsByConcept.keys(),
-        ...interactiveFieldsByConcept.keys(),
-        ...interactiveLensesByConcept.keys(),
-    ]);
-    for (const conceptName of conceptNamesToUpdate) {
-        const concept = localOntology.concepts.get(conceptName);
-        if (concept === undefined)
-            continue;
-        const withObserved = mergeObservedFieldsIntoConcept(concept, observedFieldsByConcept.get(conceptName) ?? []);
-        const withInteractiveFields = mergeAdditionalFields(withObserved, interactiveFieldsByConcept.get(conceptName) ?? []);
-        const withLenses = mergeAdditionalLenses(withInteractiveFields, interactiveLensesByConcept.get(conceptName) ?? []);
-        await writeConcept(omsDir, withLenses, localConceptDocuments.get(conceptName));
-    }
-    console.log(`\nOh My Second Brain setup complete.`);
+    const { copiedFiles, copyError } = await applySetup(decision, { dryRun });
+    if (copyError !== undefined)
+        console.warn("[oms] Could not copy concept files:", copyError);
+    console.log(`\nOh My Second Brain setup ${dryRun ? "preview complete" : "complete"}.`);
     console.log(`  Vault:    ${vault}`);
-    console.log(`  Written:  ${path.join(omsDir, "taxonomy.yaml")}`);
-    console.log(`  Concepts: ${copiedFiles.join(", ") || "(none)"}`);
-    console.log(`  Folders:  ${Object.keys(folderBindings).join(", ") || "(none)"}`);
+    console.log(`  ${dryRun ? "Would write" : "Written"}:  ${path.join(state.omsDir, "taxonomy.yaml")}`);
+    console.log(`  Concepts: ${dryRun ? decision.bundledConceptFiles.join(", ") || "(none)" : copiedFiles.join(", ") || "(none)"}`);
+    console.log(`  Folders:  ${Object.keys(decision.taxonomy.folders).join(", ") || "(none)"}`);
     console.log(`\nRun "oh-my-second-brain doctor" to validate existing notes.\n`);
     if (installClaude) {
         printClaudeInstallPlan(buildClaudeInstallPlan({ vault }));

package/dist/cli/setup-command.js.map

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package/dist/cli/update-notice.d.ts

@@ -1,4 +1,4 @@
-import { type UpdateRunner } from "../update/update.js";
+import { type UpdateRunner } from "../kernel/update/update.js";
 export declare function readCurrentPackageVersion(): Promise<string | null>;
 export declare function maybePrintUpdateNotice(options?: {
     readonly currentVersion?: string | null;

package/dist/cli/update-notice.js

@@ -1,7 +1,7 @@
 import { readFile } from "node:fs/promises";
 import path from "node:path";
-import { resolveBundledAssetPaths } from "../core/runtime/assets.js";
-import { checkUpdateNotice, formatUpdateNotice, } from "../update/update.js";
+import { resolveBundledAssetPaths } from "../kernel/runtime/assets.js";
+import { checkUpdateNotice, formatUpdateNotice, } from "../kernel/update/update.js";
 const bundledAssets = resolveBundledAssetPaths();
 function isRecord(value) {
     return typeof value === "object" && value !== null && !Array.isArray(value);

package/dist/cli/update-notice.js.map

@@ -1 +1 @@
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package/dist/cli/usage.d.ts

@@ -1,4 +1,4 @@
-import type { HarnessSurfaceRegistry } from "../harness/surface-registry.js";
+import type { HarnessSurfaceRegistry } from "../kernel/harness/surface-registry.js";
 export declare function mainUsageCommandNames(registry?: HarnessSurfaceRegistry): readonly string[];
 export declare function cliUsageText(registry?: HarnessSurfaceRegistry): string;
 export declare function printUsage(): void;

package/dist/cli/usage.js

@@ -1,4 +1,4 @@
-import { harnessSurfaceRegistry } from "../harness/surface-registry.js";
+import { harnessSurfaceRegistry } from "../kernel/harness/surface-registry.js";
 const MAIN_USAGE_COMMANDS = [
     { name: "setup", line: "  setup    Adopt an existing vault into the Oh My Second Brain convention." },
     { name: "install", line: "  install  Install Oh My Second Brain host adapters and MCP registration." },
@@ -69,7 +69,7 @@ Usage:
   oh-my-second-brain lint [--vault <path>] [--verbose] [--json]
   oh-my-second-brain link --vault <path> --folder <name> [--folder <name> ...] [--no-convention-note]
   oh-my-second-brain linkify [--vault <path>] [--folder <name>] [--apply --yes]
-  oh-my-second-brain semantic <status|sync|query|search|vsearch|get|multi-get|collection> [options]
+  oh-my-second-brain semantic <query|status|get|multi-get|vsearch|search|sync|update|embed|collection|context|cleanup|serve|http> [options]
   oh-my-second-brain mcp [--vault <path>]
   oh-my-second-brain hook pre-tool-use [--vault <path>]
   oh-my-second-brain hook post-tool-use [--vault <path>]

package/dist/cli/usage.js.map

@@ -1 +1 @@
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package/dist/{capture → kernel/capture}/safe.d.ts

@@ -1,6 +1,6 @@
 import { type WriteContractViolation, type WriteFieldDescriptor } from "../conventions/write-contract.js";
 import { type WriteRejection, type WriteReceipt, type WriteTargetSource } from "../conventions/write-protocol.js";
-import type { Concept, Ontology } from "../core/ontology/types.js";
+import type { Concept, Ontology } from "../ontology/types.js";
 export type CapturePrepareAction = "ready" | "ask-missing-fields" | "route-to-inbox";
 export type CaptureWriteMode = "create" | "append";
 export type WriteMode = "create" | "append" | "update";
@@ -76,6 +76,16 @@ export interface WriteNoteResult {
 }
 export declare function safeVaultNotePath(vault: string, notePath: string): string;
 export declare function prepareCapture(input: CapturePrepareInput): CapturePlan;
+/**
+ * Admission Rules - target verification.
+ *
+ * Runs before ANY disk mutation. `cwd` resolution is unverified for the write
+ * surface (the process may have booted anywhere). A `global` registry pointer
+ * must still point at a real `.oms` ontology; every other source is trusted
+ * without an ontology presence check so the bundled-ontology fallback keeps
+ * working.
+ */
+export declare function admitWriteTarget(target: WriteTarget): Promise<WriteRejection | undefined>;
 export interface StagedEvaluation {
     ok: boolean;
     violations: WriteContractViolation[];