oh-my-second-brain 0.11.0 → 0.11.1

package/.claude-plugin/marketplace.json

@@ -10,7 +10,7 @@
     {
       "name": "oms",
       "description": "Oh My Second Brain convention layer for Obsidian vaults — capture, retrieve, and validate knowledge under a declared semantic convention.",
-      "version": "0.11.0",
+      "version": "0.11.1",
       "author": {
         "name": "gobeumsu",
         "email": "gobeumsu@gmail.com"
@@ -37,5 +37,5 @@
       ]
     }
   ],
-  "version": "0.11.0"
+  "version": "0.11.1"
 }

package/.claude-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "oms",
-  "version": "0.11.0",
+  "version": "0.11.1",
   "description": "Oh My Second Brain convention layer for Obsidian vaults — capture, retrieve, and validate knowledge under a declared semantic convention.",
   "author": {
     "name": "gobeumsu"

package/.codex-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "oms",
-  "version": "0.11.0",
+  "version": "0.11.1",
   "description": "Oh My Second Brain convention layer for Obsidian vaults — Codex native rules, skills, and MCP adapter.",
   "_note": "oms install writes Codex MCP config, installs ~/.codex/rules/oms.md, and installs ~/.codex/skills/oms-*.",
   "skills": "./assets/skills/",

package/CHANGELOG-assets.md

@@ -4,6 +4,8 @@ Skills, agents, templates, and host guidance changes belong here.
 
 ## [Unreleased]
 
+## [0.11.1] - 2026-09-01
+
 ## [0.11.0] - 2026-09-01
 
 ## [0.10.1] - 2026-09-01

package/CHANGELOG-cli.md

@@ -4,6 +4,12 @@ Changes to the `oms` command surface belong here.
 
 ## [Unreleased]
 
+## [0.11.1] - 2026-09-01
+
+### Changed
+
+- **`oms doctor` includes one computed Hermes provenance status in both text and JSON output.** The resolved root is reported as `not-installed`, `match`, or `drift`, with package version, recorded version, and digest-match evidence.
+
 ## [0.11.0] - 2026-09-01
 
 ### Added

package/CHANGELOG-kernel.md

@@ -4,6 +4,12 @@ Domain logic changes belong here.
 
 ## [Unreleased]
 
+## [0.11.1] - 2026-09-01
+
+### Changed
+
+- **Hermes provenance now records `skillTreeDigest` at `adapters/oms/oms-provenance.json`.** Ownership has six explicit outcomes: absent, matching, drift, foreign, legacy-candidate, and newer-version rejection. The leaf remains independent of update orchestration.
+
 ## [0.11.0] - 2026-09-01
 
 ### Added

package/CHANGELOG-mcp.md

@@ -4,6 +4,8 @@ MCP server tools and resources belong here.
 
 ## [Unreleased]
 
+## [0.11.1] - 2026-09-01
+
 ## [0.11.0] - 2026-09-01
 
 ### Fixed

package/CHANGELOG-vendors.md

@@ -4,6 +4,12 @@ Per-host adapter and installer changes belong here.
 
 ## [Unreleased]
 
+## [0.11.1] - 2026-09-01
+
+### Changed
+
+- **Hermes provenance uses the canonical `oms-provenance.json` filename and `skillTreeDigest` field.** The former dot-file name is never read or specially handled; adapter-directory replacement owns cleanup. Legacy adoption requires a genuine older-version handoff: a parseable manifest whose semver is strictly lower than the running package, exactly seven canonical skill directories, and a `SKILL.md` in each — a same-version manifest without provenance is rejected as forged. Fault-injection and vault-reconcile matrices run on both the default and `profiles/xia` roots.
+
 ## [0.11.0] - 2026-09-01
 
 ### Changed

package/CHANGELOG.md

@@ -10,6 +10,12 @@ This aggregate changelog contains changes that span multiple layers.
 
 ## [Unreleased]
 
+## [0.11.1] - 2026-09-01
+
+### Fixed
+
+- **Provenance contract and lifecycle hardening across kernel, CLI, and the Hermes adapter.** The provenance record follows its approved external contract (`adapters/oms/oms-provenance.json` with `skillTreeDigest`), newer owned installs are never silently downgraded, legacy adoption proves a genuine older-version handoff, update admits only writable resolved prefixes and reports package and host mutations separately, `oms index status` reports an absent engine store honestly with sync guidance, and graph type-affinity cap warnings surface through the real build report.
+
 ## [0.11.0] - 2026-09-01
 
 ### Added

package/assets/hermes-manifest.json

@@ -1,6 +1,6 @@
 {
   "name": "oms",
-  "version": "0.11.0",
+  "version": "0.11.1",
   "description": "Oh My Second Brain convention layer for Obsidian vaults — Hermes skill bundle and MCP adapter.",
   "_note": "oms install writes ~/.hermes/config.yaml mcp_servers.oms and installs skills under ~/.hermes/skills/knowledge-management/oms/."
 }

package/dist/cli/doctor-lint.d.ts

@@ -1,3 +1,9 @@
+export type HermesProvenanceStatus = {
+    readonly state: "not-installed" | "match" | "drift";
+    readonly packageVersion: string | null;
+    readonly recordedVersion: string | null;
+    readonly digestMatch: boolean | null;
+};
 export declare function runDoctor(opts: {
     vault: string;
     verbose?: boolean;

package/dist/cli/doctor-lint.js

@@ -6,36 +6,42 @@ import { hostHome } from "../kernel/install/common.js";
 import { computeTreeDigest, parseProvenance } from "../kernel/install/provenance.js";
 import { diagnoseTemplates } from "../kernel/templates/index.js";
 import path from "node:path";
-async function hermesProvenanceSummary() {
+async function hermesProvenanceStatus() {
     const hermesRoot = hostHome(undefined, ".hermes", "OMS_HERMES_HOME");
     const skillRoot = path.join(hermesRoot, "skills", "knowledge-management", "oms");
-    const provenancePath = path.join(hermesRoot, "adapters", "oms", ".oms-provenance.json");
-    if (!existsSync(provenancePath) || !existsSync(skillRoot))
-        return "Hermes provenance: not installed.";
+    const provenancePath = path.join(hermesRoot, "adapters", "oms", "oms-provenance.json");
+    const packageMetadata = JSON.parse(await readFile(new URL("../../package.json", import.meta.url), "utf8"));
+    const packageVersion = typeof packageMetadata.version === "string" ? packageMetadata.version : null;
+    if (!existsSync(provenancePath) || !existsSync(skillRoot)) {
+        return { state: "not-installed", packageVersion, recordedVersion: null, digestMatch: null };
+    }
     try {
         const provenance = parseProvenance(await readFile(provenancePath, "utf8"));
-        const packageVersion = JSON.parse(await readFile(new URL("../../package.json", import.meta.url), "utf8"));
-        if (provenance !== null && typeof packageVersion.version === "string" &&
-            provenance.version === packageVersion.version && provenance.treeDigest === await computeTreeDigest(skillRoot)) {
-            return "Hermes provenance: package and installed tree match.";
+        const digestMatch = provenance === null ? false : provenance.skillTreeDigest === await computeTreeDigest(skillRoot);
+        if (provenance !== null && packageVersion !== null && provenance.version === packageVersion && digestMatch) {
+            return { state: "match", packageVersion, recordedVersion: provenance.version, digestMatch };
         }
+        return { state: "drift", packageVersion, recordedVersion: provenance?.version ?? null, digestMatch };
     }
     catch {
-        return "Hermes provenance: drift detected.";
+        return { state: "drift", packageVersion, recordedVersion: null, digestMatch: false };
     }
-    return "Hermes provenance: drift detected.";
+}
+function formatHermesProvenanceStatus(status) {
+    return `Hermes provenance: ${status.state} (package ${status.packageVersion ?? "unknown"}, recorded ${status.recordedVersion ?? "none"}).`;
 }
 export async function runDoctor(opts) {
     try {
         const diagnosis = await diagnoseTemplates({ vault: opts.vault, source: "explicit", maxPerTemplate: opts.maxPerTemplate });
+        const hermesProvenance = await hermesProvenanceStatus();
         if (opts.json) {
-            console.log(JSON.stringify({ vault: opts.vault, ...diagnosis }, null, 2));
+            console.log(JSON.stringify({ vault: opts.vault, ...diagnosis, hermesProvenance }, null, 2));
             return 0;
         }
         console.log(`\nOh My Second Brain doctor: ${diagnosis.status}.`);
         console.log(`Migration marker: ${diagnosis.migrationMarker}.`);
         console.log(`Managed template sources excluded: ${diagnosis.managedSourceExclusions.length}.`);
-        console.log(await hermesProvenanceSummary());
+        console.log(formatHermesProvenanceStatus(hermesProvenance));
         if (diagnosis.unresolvedLegacyNotes.length > 0) {
             console.log(`Unresolved legacy notes: ${diagnosis.unresolvedLegacyNotes.length}.`);
         }

package/dist/cli/doctor-lint.js.map

@@ -1 +1 @@
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package/dist/cli/host-commands.js

@@ -129,10 +129,6 @@ export async function runUpdateCommand(context) {
         interactive: process.stdin.isTTY === true && process.env["OMS_NON_INTERACTIVE"] !== "1",
         executeExternal: context.executeExternal,
         timeoutMs: context.timeoutMs,
-        reconcileCommand: {
-            command: process.execPath,
-            argsPrefix: process.argv[1] === undefined ? [] : [process.argv[1]],
-        },
     });
     console.log(formatUpdateResult(result));
     return result.success ? 0 : 1;

package/dist/cli/host-commands.js.map

@@ -1 +1 @@
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+{"version":3,"file":"host-commands.js","sourceRoot":"","sources":["../../src/cli/host-commands.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACL,0BAA0B,EAC1B,8BAA8B,EAC9B,gBAAgB,EAChB,qBAAqB,GAItB,MAAM,4BAA4B,CAAC;AACpC,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,sBAAsB,EACtB,oBAAoB,EACpB,6BAA6B,EAC7B,qBAAqB,GAEtB,MAAM,8BAA8B,CAAC;AACtC,OAAO,EAAE,kBAAkB,EAAE,SAAS,EAAE,MAAM,4BAA4B,CAAC;AAC3E,OAAO,EAAE,aAAa,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC7E,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAE,aAAa,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC7E,OAAO,EAAE,yBAAyB,EAAE,MAAM,oBAAoB,CAAC;AAkB/D,KAAK,UAAU,sBAAsB,CACnC,OAA+C,EAC/C,OAAoB;IAEpB,MAAM,IAAI,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAC;IAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;QACjC,IAAI,OAAO,KAAK,QAAQ;YAAE,OAAO,aAAa,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAC9D,IAAI,OAAO,KAAK,OAAO;YAAE,OAAO,YAAY,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAC5D,OAAO,aAAa,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;IACtC,CAAC;IACD,IAAI,OAAO,KAAK,QAAQ;QAAE,OAAO,eAAe,CAAC,OAAO,CAAC,CAAC;IAC1D,IAAI,OAAO,KAAK,OAAO;QAAE,OAAO,cAAc,CAAC,OAAO,CAAC,CAAC;IACxD,OAAO,eAAe,CAAC,OAAO,CAAC,CAAC;AAClC,CAAC;AAED,SAAS,sBAAsB,CAAC,OAAuC;IACrE,OAAO,OAAO,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;AACpG,CAAC;AAED,SAAS,oBAAoB,CAC3B,OAA8B,EAC9B,MAA+B,EAC/B,KAAc;IAEd,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;QAC7B,IAAI,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC;YACrE,MAAM,CAAC,QAAQ,CAAC,IAAI,CAClB,MAAM,KAAK,SAAS,IAAI,KAAK,KAAK,SAAS;gBACzC,CAAC,CAAC,iCAAiC,MAAM,CAAC,OAAO,YAAY,KAAK,QAAQ;gBAC1E,CAAC,CAAC,mCAAmC,MAAM,CAAC,OAAO,QAAQ,CAC9D,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC;AAED,KAAK,UAAU,4BAA4B,CACzC,MAA+B,EAC/B,OAA2B;IAE3B,MAAM,OAAO,GAAG,MAAM,6BAA6B,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IAChF,MAAM,cAAc,GAAG,MAAM,KAAK,SAAS;QACzC,CAAC,CAAC,MAAM,kBAAkB,CAAC,OAAO,CAAC,KAAK,CAAC;QACzC,CAAC,CAAC,OAAO,CAAC,OAAO,EAAE,KAAK,IAAI,OAAO,CAAC,KAAK,CAAC;IAE5C,MAAM,OAAO,GAAG,MAAM,gBAAgB,CACpC;QACE,MAAM;QACN,OAAO,EAAE,OAAO,CAAC,OAAO,IAAI,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,CAAC;QACnE,KAAK,EAAE,cAAc;QACrB,UAAU,EAAE,OAAO,CAAC,UAAU;QAC9B,MAAM,EAAE,OAAO,CAAC,MAAM;QACtB,eAAe,EAAE,OAAO,CAAC,eAAe;QACxC,GAAG,EAAE,OAAO,CAAC,GAAG;QAChB,WAAW,EAAE,OAAO,CAAC,WAAW;KACjC,EACD,sBAAsB,CACvB,CAAC;IACF,MAAM,MAAM,GAAG,sBAAsB,CAAC,OAAO,CAAC,CAAC;IAC/C,oBAAoB,CAAC,OAAO,EAAE,MAAM,EAAE,cAAc,CAAC,CAAC;IACtD,IAAI,MAAM,EAAE,CAAC;QACX,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC;IACtC,CAAC;IACD,MAAM,OAAO,GAAG,MAAM,KAAK,SAAS;QAClC,CAAC,CAAC,MAAM,qBAAqB,CAAC,cAAc,EAAE,OAAO,CAAC,OAAO,EAAE,SAAS,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC;QACrG,CAAC,CAAC,MAAM,sBAAsB,CAAC,OAAO,CAAC,OAAO,EAAE,SAAS,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IACzF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC;AAC/C,CAAC;AAED,SAAS,wBAAwB,CAC/B,OAAuC,EACvC,OAAgC,EAChC,IAAa,EACb,MAAe;IAEf,IAAI,IAAI,EAAE,CAAC;QACT,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,8BAA8B,CAAC,OAAO,EAAE,MAAM,CAAC,CAA4B,CAAC;QACzG,OAAO,IAAI,CAAC,SAAS,CAAC,EAAE,GAAG,SAAS,EAAE,OAAO,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;IAC5D,CAAC;IACD,OAAO,GAAG,0BAA0B,CAAC,OAAO,EAAE,MAAM,CAAC,gBAAgB,OAAO,CAAC,SAAS,IAAI,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;AAC7L,CAAC;AAED,sEAAsE;AACtE,MAAM,CAAC,KAAK,UAAU,qBAAqB,CACzC,MAA+B,EAC/B,OAA2B;IAE3B,IAAI,MAAM,KAAK,WAAW,IAAI,CAAC,OAAO,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,IAAI,OAAO,CAAC,GAAG,CAAC,qBAAqB,CAAC,KAAK,GAAG,EAAE,CAAC;QAC5G,OAAO,CAAC,KAAK,CAAC,sDAAsD,CAAC,CAAC;QACtE,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,SAA2H,CAAC;IAChI,IAAI,CAAC;QACH,SAAS,GAAG,MAAM,4BAA4B,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAClE,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,OAAO,GAAG,KAAK,YAAY,qBAAqB,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QACvF,OAAO,CAAC,KAAK,CAAC,SAAS,OAAO,EAAE,CAAC,CAAC;QAClC,OAAO,CAAC,CAAC;IACX,CAAC;IACD,OAAO,CAAC,GAAG,CACT,wBAAwB,CAAC,SAAS,CAAC,OAAO,EAAE,SAAS,CAAC,OAAO,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC,MAAM,CAAC,CAC7F,CAAC;IAEF,OAAO,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AAClC,CAAC;AAED,mDAAmD;AACnD,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,OAA2B;IAChE,IAAI,OAAO,CAAC,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACpC,OAAO,CAAC,KAAK,CAAC,oCAAoC,OAAO,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACrF,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,OAAgC,CAAC;IACrC,IAAI,YAAoB,CAAC;IACzB,IAAI,CAAC;QACH,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,aAAa;YACpC,CAAC,CAAC,6BAA6B,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC;YAC3D,CAAC,CAAC,oBAAoB,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;QACtD,IAAI,OAAO,CAAC,aAAa,EAAE,CAAC;YAC1B,YAAY,GAAG,MAAM,kBAAkB,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;YACvD,OAAO,GAAG,MAAM,qBAAqB,CAAC,YAAY,EAAE,OAAO,CAAC,OAAO,EAAE,SAAS,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;QAC9G,CAAC;aAAM,IAAI,OAAO,CAAC,OAAO,KAAK,SAAS,EAAE,CAAC;YACzC,YAAY,GAAG,OAAO,CAAC,OAAO,CAAC,KAAK,CAAC;QACvC,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAA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package/dist/cli/index-command.js

@@ -3,6 +3,8 @@ import { runEngineSession } from "./engine-session.js";
 import { searchUsage } from "./search-usage.js";
 import { repairEngineStore } from "../kernel/engine/embed/repair.js";
 import { engineStoreDiagnostic } from "../kernel/engine/embed/store.js";
+import { engineStorePath } from "../kernel/engine/paths.js";
+import { existsSync } from "node:fs";
 export async function runIndexCommand(options) {
     const { args, vault, write, writeError } = options;
     const command = args.positional[1];
@@ -53,6 +55,10 @@ export async function runIndexCommand(options) {
         });
     }
     if (command === "status") {
+        if (!existsSync(engineStorePath(vault))) {
+            writeError("No engine store; run `oms index sync`.");
+            return 1;
+        }
         try {
             return await runEngineSession(vault, { write: false }, async (adapter) => {
                 const result = await adapter.semanticStatus({ vault, index: stringOption(args, "index") });

package/dist/cli/index-command.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index-command.js","sourceRoot":"","sources":["../../src/cli/index-command.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,aAAa,EACb,YAAY,EACZ,SAAS,EACT,YAAY,GAEb,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AACvD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,kCAAkC,CAAC;AACrE,OAAO,EAAE,qBAAqB,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AASrC,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,OAA4B;IAChE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;IACnD,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;IAEnC,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;QACzB,MAAM,IAAI,GAAG,YAAY,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;QACxC,IAAI,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC;YACjE,UAAU,CAAC,4DAA4D,CAAC,CAAC;YACzE,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,IAAI,CAAC,UAAU,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACjC,UAAU,CAAC,yDAAyD,CAAC,CAAC;YACtE,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,OAAO,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,QAAQ,IAAI,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC;YACxF,UAAU,CAAC,0CAA0C,CAAC,CAAC;YACvD,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;YACvB,UAAU,CAAC,oEAAoE,CAAC,CAAC;YACjF,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,IAAI,KAAK,SAAS,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;YAC1C,UAAU,CAAC,4DAA4D,CAAC,CAAC;YACzE,OAAO,CAAC,CAAC;QACX,CAAC;QACD,MAAM,WAAW,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,KAAK,MAAM,IAAI,GAAG,KAAK,QAAQ,CAAC,CAAC;QAClG,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,UAAU,CAAC,4CAA4C,WAAW,CAAC,CAAC,CAAE,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC;YACrI,OAAO,CAAC,CAAC;QACX,CAAC;QACD,SAAS,CAAC,KAAK,EAAE,iBAAiB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,aAAa,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;QAC5F,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,OAAO,KAAK,MAAM,EAAE,CAAC;QACvB,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAC9E,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC;gBAC1C,KAAK;gBACL,UAAU,EAAE,YAAY,CAAC,IAAI,EAAE,YAAY,CAAC;gBAC5C,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC;gBAClC,KAAK,EAAE,KAAK;gBACZ,KAAK,EAAE,aAAa,CAAC,IAAI,EAAE,OAAO,CAAC;gBACnC,aAAa,EAAE,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC;gBAClD,eAAe,EAAE,YAAY,CAAC,IAAI,EAAE,iBAAiB,CAAC;gBACtD,UAAU,EAAE,YAAY,CAAC,IAAI,EAAE,YAAY,CAAC;aAC7C,CAAC,CAAC;YACH,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;QACzB,IAAI,CAAC,UAAU,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC;YACxC,UAAU,CAAC,wCAAwC,CAAC,CAAC;YACrD,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,CAAC;YACH,OAAO,MAAM,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;gBACvE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;gBAC3F,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;gBACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YAClC,CAAC,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,IAAI,qBAAqB,CAAC,KAAK,CAAC,KAAK,yBAAyB,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;gBACzF,UAAU,CAAC,GAAG,KAAK,CAAC,OAAO,iEAAiE,CAAC,CAAC;gBAC9F,OAAO,CAAC,CAAC;YACX,CAAC;YACD,MAAM,KAAK,CAAC;QACd,CAAC;IACH,CAAC;IAED,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;QAC1B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAChE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACpF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,aAAa,EAAE,CAAC;QAC9B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACtF,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC;gBACtB,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;gBACzB,OAAO,CAAC,CAAC;YACX,CAAC;YACD,MAAM,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;YAChC,SAAS,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,UAAU,EAAE,EAAE,CAAC,UAAU,CAAC,IAAI,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAC;YACnI,OAAO,CAAC,CAAC;QACX,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,UAAU,EAAE,CAAC;QAC3B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,YAAY,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACzF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,UAAU,CAAC,mCAAmC,OAAO,IAAI,QAAQ,EAAE,CAAC,CAAC;IACrE,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;IAC1B,OAAO,CAAC,CAAC;AACX,CAAC"}

package/dist/kernel/engine/embed/repair.js

@@ -27,7 +27,7 @@ export function repairEngineStore(options) {
     return plan;
 }
 function backupStorePath(storePath, now) {
-    const timestamp = now.toISOString().replace(/[-:.]/gu, "").replace("Z", "Z");
+    const timestamp = now.toISOString().replace(/[-:.]/gu, "");
     return `${storePath}.backup-${timestamp}`;
 }
 function moveStoreWithSidecars(storePath, backupPath) {

package/dist/kernel/engine/embed/repair.js.map

@@ -1 +1 @@
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+{"version":3,"file":"repair.js","sourceRoot":"","sources":["../../../../src/kernel/engine/embed/repair.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACjD,OAAO,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AACjD,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAmB9C;;;;GAIG;AACH,MAAM,UAAU,iBAAiB,CAAC,OAAiC;IACjE,MAAM,SAAS,GAAG,eAAe,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;IACjD,MAAM,UAAU,GAAG,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,SAAS,EAAE,OAAO,CAAC,GAAG,EAAE,EAAE,IAAI,IAAI,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC5G,MAAM,IAAI,GAA0B;QAClC,IAAI,EAAE,OAAO,CAAC,IAAI;QAClB,SAAS;QACT,UAAU;QACV,eAAe,EAAE,IAAI;QACrB,MAAM,EAAE,OAAO,CAAC,MAAM,KAAK,IAAI;KAChC,CAAC;IACF,IAAI,OAAO,CAAC,MAAM;QAAE,OAAO,IAAI,CAAC;IAEhC,IAAI,UAAU,KAAK,IAAI;QAAE,qBAAqB,CAAC,SAAS,EAAE,UAAU,CAAC,CAAC;IACtE,IAAI,OAAO,CAAC,IAAI,KAAK,SAAS,EAAE,CAAC;QAC/B,MAAM,KAAK,GAAG,mBAAmB,CAAC,SAAS,CAAC,CAAC;QAC7C,KAAK,CAAC,KAAK,EAAE,CAAC;IAChB,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAS,eAAe,CAAC,SAAiB,EAAE,GAAS;IACnD,MAAM,SAAS,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;IAC3D,OAAO,GAAG,SAAS,WAAW,SAAS,EAAE,CAAC;AAC5C,CAAC;AAED,SAAS,qBAAqB,CAAC,SAAiB,EAAE,UAAkB;IAClE,UAAU,CAAC,SAAS,EAAE,UAAU,CAAC,CAAC;IAClC,KAAK,MAAM,MAAM,IAAI,CAAC,MAAM,EAAE,MAAM,CAAU,EAAE,CAAC;QAC/C,IAAI,UAAU,CAAC,GAAG,SAAS,GAAG,MAAM,EAAE,CAAC;YAAE,UAAU,CAAC,GAAG,SAAS,GAAG,MAAM,EAAE,EAAE,GAAG,UAAU,GAAG,MAAM,EAAE,CAAC,CAAC;IACzG,CAAC;AACH,CAAC"}

package/dist/kernel/engine/graph/builder.d.ts

@@ -4,6 +4,15 @@ import type { EngineGraphNode } from "./node.js";
 export declare const TYPE_AFFINITY_MAX_GROUP = 64;
 export declare function typeAffinityCapWarnings(groups: ReadonlyMap<string, readonly string[]>, unbounded?: boolean): string[];
 /** Build graph edges from the current resolved template projection without writing vault state. */
+export declare function buildGraphWithWarnings(opts: {
+    readonly vaultPath: string;
+    readonly convention: ResolvedConvention;
+    readonly files?: readonly string[];
+}): Promise<{
+    readonly edges: GraphEdge[];
+    readonly warnings: readonly string[];
+}>;
+/** Build graph edges from the current resolved template projection without writing vault state. */
 export declare function buildGraph(opts: {
     readonly vaultPath: string;
     readonly convention: ResolvedConvention;

package/dist/kernel/engine/graph/builder.js

@@ -125,12 +125,12 @@ function typeAffinityCappedTemplates(groups, unbounded) {
         .sort(([left], [right]) => left.localeCompare(right));
 }
 /** Build graph edges from the current resolved template projection without writing vault state. */
-export async function buildGraph(opts) {
+export async function buildGraphWithWarnings(opts) {
     const vault = path.resolve(opts.vaultPath);
     requireConvention(opts.convention);
     const docs = selectedDocs(await parseDocs(vault, await graphPaths(vault, opts.files, opts.convention)), opts.convention);
     if (docs.length === 0)
-        return [];
+        return { edges: [], warnings: [] };
     const index = buildWikilinkIndexWithFrontmatter(docs.map(doc => ({ path: doc.docPath, frontmatter: doc.frontmatter })));
     const edges = [];
     const adjacency = new Map();
@@ -195,7 +195,14 @@ export async function buildGraph(opts) {
                 edges.push({ from: members[left], to: members[right], weight: 1, kind: "type-affinity" }, { from: members[right], to: members[left], weight: 1, kind: "type-affinity" });
             }
     }
-    return edges.sort((left, right) => left.from.localeCompare(right.from) || left.to.localeCompare(right.to) || left.kind.localeCompare(right.kind) || left.weight - right.weight);
+    return {
+        edges: edges.sort((left, right) => left.from.localeCompare(right.from) || left.to.localeCompare(right.to) || left.kind.localeCompare(right.kind) || left.weight - right.weight),
+        warnings: typeAffinityCapWarnings(groups),
+    };
+}
+/** Build graph edges from the current resolved template projection without writing vault state. */
+export async function buildGraph(opts) {
+    return (await buildGraphWithWarnings(opts)).edges;
 }
 /** Scan template-bound notes and construct retrieval nodes without writing vault state. */
 export async function buildNodeIndex(opts) {

package/dist/kernel/engine/graph/builder.js.map

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package/dist/kernel/engine/mcp/facade.js

@@ -31,7 +31,7 @@ import { acquireEngineStoreWriterLock, syncEngineStore, walkMarkdown, } from "..
 import { openEngineStore } from "../embed/store.js";
 import { engineStorePath } from "../paths.js";
 import { capabilityGuidance } from "../embed/config.js";
-import { buildGraph, saveCachedGraph, loadCachedGraphMeta, buildNodeIndex, saveNodeIndex, loadNodeIndex, nodeSourceSignature, } from "../graph/builder.js";
+import { buildGraphWithWarnings, saveCachedGraph, loadCachedGraphMeta, buildNodeIndex, saveNodeIndex, loadNodeIndex, nodeSourceSignature, } from "../graph/builder.js";
 import { filterNodesByAxis, filterNodesByQueryAxes, queryFacets, searchScore, } from "../graph/node.js";
 import { normalizeQueryOptions, retrievalResultsToQueryResult, queryResultUnavailable, } from "./query-mapper.js";
 import { engineSyncResultToMcp, syncResultUnavailable, capsToEngineStatusResult, engineStatusResultToMcp, statusResultUnavailable, engineStatusToCollectionResult, cleanupResultUnavailable, graphBuildOptionsToEngineArgs, engineGraphBuildResultToMcp, engineGraphBuildToStatusResult, } from "./op-mappers.js";
@@ -892,20 +892,22 @@ export class McpEngineAdapter {
                 const sourceSignature = await nodeSourceSignature(args.vaultPath, convention);
                 const nodes = await loadNodeIndex(this.nodeCachePath(args.vaultPath), sourceSignature, convention.inputSignature);
                 if (nodes !== null)
-                    return engineGraphBuildResultToMcp({ notes: nodes.length, edges: meta.edges.length, generatedAt: meta.generatedAt });
+                    return engineGraphBuildResultToMcp({ notes: nodes.length, edges: meta.edges.length, generatedAt: meta.generatedAt, warnings: [] });
             }
             return engineGraphBuildResultToMcp({
                 notes: 0,
                 edges: 0,
                 generatedAt: new Date().toISOString(),
+                warnings: [],
             });
         }
-        const edges = await buildGraph({ vaultPath: args.vaultPath, convention });
+        const built = await buildGraphWithWarnings({ vaultPath: args.vaultPath, convention });
+        const edges = built.edges;
         await saveCachedGraph(graphCachePath, edges, convention.inputSignature);
         const nodes = await buildNodeIndex({ vaultPath: args.vaultPath, convention });
         const sourceSignature = await nodeSourceSignature(args.vaultPath, convention);
         await saveNodeIndex(this.nodeCachePath(args.vaultPath), nodes, sourceSignature, convention.inputSignature);
-        return engineGraphBuildResultToMcp({ notes: nodes.length, edges: edges.length, generatedAt: new Date().toISOString() });
+        return engineGraphBuildResultToMcp({ notes: nodes.length, edges: edges.length, generatedAt: new Date().toISOString(), warnings: built.warnings });
     }
     // -------------------------------------------------------------------------
     // 8a. oms_graph_status