oh-my-second-brain 0.10.1 → 0.11.0

package/.claude-plugin/marketplace.json

@@ -10,7 +10,7 @@
     {
       "name": "oms",
       "description": "Oh My Second Brain convention layer for Obsidian vaults — capture, retrieve, and validate knowledge under a declared semantic convention.",
-      "version": "0.10.1",
+      "version": "0.11.0",
       "author": {
         "name": "gobeumsu",
         "email": "gobeumsu@gmail.com"
@@ -37,5 +37,5 @@
       ]
     }
   ],
-  "version": "0.10.1"
+  "version": "0.11.0"
 }

package/.claude-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "oms",
-  "version": "0.10.1",
+  "version": "0.11.0",
   "description": "Oh My Second Brain convention layer for Obsidian vaults — capture, retrieve, and validate knowledge under a declared semantic convention.",
   "author": {
     "name": "gobeumsu"

package/.codex-plugin/plugin.json

@@ -1,6 +1,6 @@
 {
   "name": "oms",
-  "version": "0.10.1",
+  "version": "0.11.0",
   "description": "Oh My Second Brain convention layer for Obsidian vaults — Codex native rules, skills, and MCP adapter.",
   "_note": "oms install writes Codex MCP config, installs ~/.codex/rules/oms.md, and installs ~/.codex/skills/oms-*.",
   "skills": "./assets/skills/",

package/CHANGELOG-assets.md

@@ -4,6 +4,8 @@ Skills, agents, templates, and host guidance changes belong here.
 
 ## [Unreleased]
 
+## [0.11.0] - 2026-09-01
+
 ## [0.10.1] - 2026-09-01
 
 ## [0.10.0] - 2026-09-01

package/CHANGELOG-cli.md

@@ -4,6 +4,17 @@ Changes to the `oms` command surface belong here.
 
 ## [Unreleased]
 
+## [0.11.0] - 2026-09-01
+
+### Added
+
+- **`oms index repair --mode rebuild|drop [--dry-run]`.** (#88) Repairs run before any engine session opens, so corrupt stores never block their own recovery; `oms index status` cites the exact repair command when it detects a corrupt or incompatible store; dry-run prints the plan with zero file changes.
+- **`oms doctor` reports Hermes install provenance in one read-only line.** (#90) Not-installed, match, or drift between the package version and the installed provenance for the resolved `OMS_HERMES_HOME` root.
+
+### Changed
+
+- **`oms update` refuses ambiguous install topologies and always reconciles.** (#64) Mismatched running-binary and `npm prefix -g` locations are reported with both paths and exact manual commands instead of silently updating the wrong copy.
+
 ## [0.10.1] - 2026-09-01
 
 ### Fixed

package/CHANGELOG-kernel.md

@@ -4,6 +4,18 @@ Domain logic changes belong here.
 
 ## [Unreleased]
 
+## [0.11.0] - 2026-09-01
+
+### Added
+
+- **Install provenance is now a first-class kernel contract.** (#64, #90) A dependency-leaf module owns provenance parsing/serialization, deterministic tree digests, and a pure six-state ownership decision shared by update, install, and doctor.
+- **Legacy engine stores have a supported recovery path.** (#88) A dedicated repair service moves legacy or incompatible engine stores to timestamped backups without opening them: rebuild recreates the current empty schema, drop only retires, and neither mode ever writes vault Markdown or `.oms` authority files.
+
+### Changed
+
+- **Update follows a consumer-side contract.** (#64) The updater resolves the npm prefix that owns the running binary and refuses destructively ambiguous topologies with exact manual commands; reconciliation always runs even when the package is already current; cross-version handoff invokes the freshly installed binary's public reconcile command so a new release can never call a removed internal subcommand.
+- **Graph tier-4 type-affinity is bounded.** (#69) Groups above 64 members skip pairwise edges and emit a deterministic build-report warning; `OMS_TYPE_AFFINITY_UNBOUNDED=1` restores exhaustive pairing; behavior at or below the cap is unchanged.
+
 ## [0.10.1] - 2026-09-01
 
 ### Fixed

package/CHANGELOG-mcp.md

@@ -4,6 +4,12 @@ MCP server tools and resources belong here.
 
 ## [Unreleased]
 
+## [0.11.0] - 2026-09-01
+
+### Fixed
+
+- **A missing or unknown `op` now names the supported operations.** (#65) Instead of a bare unknown-operation error, every public tool lists its supported operations in deterministic order; `oms_status` remains the only op-free direct route, and supplying an operation to it is rejected explicitly.
+
 ## [0.10.1] - 2026-09-01
 
 ## [0.10.0] - 2026-09-01

package/CHANGELOG-vendors.md

@@ -4,6 +4,12 @@ Per-host adapter and installer changes belong here.
 
 ## [Unreleased]
 
+## [0.11.0] - 2026-09-01
+
+### Changed
+
+- **Hermes installation is provenance-aware and one-root.** (#90) Each install targets exactly the resolved `OMS_HERMES_HOME` root (Sari: `~/.hermes`; Xia: `~/.hermes/profiles/xia`), records npm provenance (version + deterministic skill-tree digest) under `adapters/oms/`, no-ops on three-way identity while still reconciling a changed vault registration, replaces owned drift atomically, fails closed on foreign or tampered trees with explicit resolution guidance, adopts only the exact legacy layout, and keeps uninstall symmetric — foreign trees are never blind-deleted.
+
 ## [0.10.1] - 2026-09-01
 
 ### Fixed

package/CHANGELOG.md

@@ -10,6 +10,12 @@ This aggregate changelog contains changes that span multiple layers.
 
 ## [Unreleased]
 
+## [0.11.0] - 2026-09-01
+
+### Added
+
+- **Lifecycle, API, and delivery-channel release across kernel, CLI, MCP, and vendors.** Update gains a consumer-side topology/provenance contract (#64), legacy engine stores gain `oms index repair` (#88), MCP op errors become self-describing (#65), graph type-affinity is bounded (#69), and Hermes delivery becomes provenance-aware with version lockstep across both agent profiles (#90).
+
 ## [0.10.1] - 2026-09-01
 
 ### Fixed

package/README.ko.md

@@ -36,7 +36,7 @@ oms doctor     템플릿 권위와 파생 상태 진단
 oms lint       깨진 [[wikilink]]와 고아 노트 점검
 oms search <text>  일반 lexical 검색; --vec, --hyde, --expand, --max-queries 1..32, --rerank은 명시적 선택
 oms embed      색인된 노트의 임베딩 생성
-oms index sync|status|cleanup|collections|contexts
+oms index sync|status|repair|cleanup|collections|contexts
 oms doc get|multi-get
 oms serve      로컬 검색 HTTP 서버 시작
 oms mcp        stdio MCP 서버 시작

package/README.md

@@ -36,7 +36,7 @@ oms doctor     Diagnose template authority and derived state
 oms lint       Check broken [[wikilinks]] and orphan notes
 oms search <text>  Plain lexical search; --vec, --hyde, --expand, --max-queries 1..32, and --rerank are explicit
 oms embed      Generate embeddings for indexed notes
-oms index sync|status|cleanup|collections|contexts
+oms index sync|status|repair|cleanup|collections|contexts
 oms doc get|multi-get
 oms serve      Start the local search HTTP server
 oms mcp        Start the stdio MCP server

package/assets/hermes-manifest.json

@@ -1,6 +1,6 @@
 {
   "name": "oms",
-  "version": "0.10.1",
+  "version": "0.11.0",
   "description": "Oh My Second Brain convention layer for Obsidian vaults — Hermes skill bundle and MCP adapter.",
   "_note": "oms install writes ~/.hermes/config.yaml mcp_servers.oms and installs skills under ~/.hermes/skills/knowledge-management/oms/."
 }

package/dist/cli/doctor-lint.js

@@ -1,6 +1,30 @@
+import { existsSync } from "node:fs";
+import { readFile } from "node:fs/promises";
 import { detectLinkIssues } from "../kernel/conventions/lint.js";
 import { formatLintReport } from "../kernel/conventions/report.js";
+import { hostHome } from "../kernel/install/common.js";
+import { computeTreeDigest, parseProvenance } from "../kernel/install/provenance.js";
 import { diagnoseTemplates } from "../kernel/templates/index.js";
+import path from "node:path";
+async function hermesProvenanceSummary() {
+    const hermesRoot = hostHome(undefined, ".hermes", "OMS_HERMES_HOME");
+    const skillRoot = path.join(hermesRoot, "skills", "knowledge-management", "oms");
+    const provenancePath = path.join(hermesRoot, "adapters", "oms", ".oms-provenance.json");
+    if (!existsSync(provenancePath) || !existsSync(skillRoot))
+        return "Hermes provenance: not installed.";
+    try {
+        const provenance = parseProvenance(await readFile(provenancePath, "utf8"));
+        const packageVersion = JSON.parse(await readFile(new URL("../../package.json", import.meta.url), "utf8"));
+        if (provenance !== null && typeof packageVersion.version === "string" &&
+            provenance.version === packageVersion.version && provenance.treeDigest === await computeTreeDigest(skillRoot)) {
+            return "Hermes provenance: package and installed tree match.";
+        }
+    }
+    catch {
+        return "Hermes provenance: drift detected.";
+    }
+    return "Hermes provenance: drift detected.";
+}
 export async function runDoctor(opts) {
     try {
         const diagnosis = await diagnoseTemplates({ vault: opts.vault, source: "explicit", maxPerTemplate: opts.maxPerTemplate });
@@ -11,6 +35,7 @@ export async function runDoctor(opts) {
         console.log(`\nOh My Second Brain doctor: ${diagnosis.status}.`);
         console.log(`Migration marker: ${diagnosis.migrationMarker}.`);
         console.log(`Managed template sources excluded: ${diagnosis.managedSourceExclusions.length}.`);
+        console.log(await hermesProvenanceSummary());
         if (diagnosis.unresolvedLegacyNotes.length > 0) {
             console.log(`Unresolved legacy notes: ${diagnosis.unresolvedLegacyNotes.length}.`);
         }

package/dist/cli/doctor-lint.js.map

@@ -1 +1 @@
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package/dist/cli/index-command.js

@@ -1,9 +1,41 @@
 import { booleanOption, numberOption, printJson, stringOption, } from "./search-args.js";
 import { runEngineSession } from "./engine-session.js";
 import { searchUsage } from "./search-usage.js";
+import { repairEngineStore } from "../kernel/engine/embed/repair.js";
+import { engineStoreDiagnostic } from "../kernel/engine/embed/store.js";
 export async function runIndexCommand(options) {
     const { args, vault, write, writeError } = options;
     const command = args.positional[1];
+    if (command === "repair") {
+        const mode = stringOption(args, "mode");
+        if (args.positional.some((value) => value.startsWith("--mode="))) {
+            writeError('CLI "--mode=rebuild" is unsupported; use "--mode rebuild".');
+            return 1;
+        }
+        if (args.positional.length !== 2) {
+            writeError("Usage: oms index repair --mode rebuild|drop [--dry-run]");
+            return 1;
+        }
+        if (typeof args.options["mode"] === "string" && args.options["mode"].includes("\u0000")) {
+            writeError('CLI "--mode" may be specified only once.');
+            return 1;
+        }
+        if (mode === undefined) {
+            writeError('CLI "oms index repair" requires "--mode rebuild" or "--mode drop".');
+            return 1;
+        }
+        if (mode !== "rebuild" && mode !== "drop") {
+            writeError('CLI "oms index repair --mode" must be "rebuild" or "drop".');
+            return 1;
+        }
+        const unsupported = Object.keys(args.options).filter((key) => key !== "mode" && key !== "dryRun");
+        if (unsupported.length > 0) {
+            writeError(`[oms] Unsupported index repair option: --${unsupported[0].replace(/[A-Z]/gu, (letter) => `-${letter.toLowerCase()}`)}`);
+            return 1;
+        }
+        printJson(write, repairEngineStore({ vault, mode, dryRun: booleanOption(args, "dryRun") }));
+        return 0;
+    }
     if (command === "sync") {
         return runEngineSession(vault, { write: true, embed: false }, async (adapter) => {
             const result = await adapter.syncEmbeddings({
@@ -21,11 +53,20 @@ export async function runIndexCommand(options) {
         });
     }
     if (command === "status") {
-        return runEngineSession(vault, { write: false }, async (adapter) => {
-            const result = await adapter.semanticStatus({ vault, index: stringOption(args, "index") });
-            printJson(write, result);
-            return result.available ? 0 : 1;
-        });
+        try {
+            return await runEngineSession(vault, { write: false }, async (adapter) => {
+                const result = await adapter.semanticStatus({ vault, index: stringOption(args, "index") });
+                printJson(write, result);
+                return result.available ? 0 : 1;
+            });
+        }
+        catch (error) {
+            if (engineStoreDiagnostic(error) === "corrupt-or-incompatible" && error instanceof Error) {
+                writeError(`${error.message} Run "oms index repair --mode rebuild" to create a fresh store.`);
+                return 1;
+            }
+            throw error;
+        }
     }
     if (command === "cleanup") {
         return runEngineSession(vault, { write: true }, async (adapter) => {

package/dist/cli/index-command.js.map

@@ -1 +1 @@
-{"version":3,"file":"index-command.js","sourceRoot":"","sources":["../../src/cli/index-command.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,aAAa,EACb,YAAY,EACZ,SAAS,EACT,YAAY,GAEb,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AACvD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAShD,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,OAA4B;IAChE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;IACnD,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;IAEnC,IAAI,OAAO,KAAK,MAAM,EAAE,CAAC;QACvB,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAC9E,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC;gBAC1C,KAAK;gBACL,UAAU,EAAE,YAAY,CAAC,IAAI,EAAE,YAAY,CAAC;gBAC5C,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC;gBAClC,KAAK,EAAE,KAAK;gBACZ,KAAK,EAAE,aAAa,CAAC,IAAI,EAAE,OAAO,CAAC;gBACnC,aAAa,EAAE,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC;gBAClD,eAAe,EAAE,YAAY,CAAC,IAAI,EAAE,iBAAiB,CAAC;gBACtD,UAAU,EAAE,YAAY,CAAC,IAAI,EAAE,YAAY,CAAC;aAC7C,CAAC,CAAC;YACH,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;QACzB,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YAC3F,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;QAC1B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAChE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACpF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,aAAa,EAAE,CAAC;QAC9B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACtF,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC;gBACtB,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;gBACzB,OAAO,CAAC,CAAC;YACX,CAAC;YACD,MAAM,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;YAChC,SAAS,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,UAAU,EAAE,EAAE,CAAC,UAAU,CAAC,IAAI,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAC;YACnI,OAAO,CAAC,CAAC;QACX,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,UAAU,EAAE,CAAC;QAC3B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,YAAY,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACzF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,UAAU,CAAC,mCAAmC,OAAO,IAAI,QAAQ,EAAE,CAAC,CAAC;IACrE,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;IAC1B,OAAO,CAAC,CAAC;AACX,CAAC"}
+{"version":3,"file":"index-command.js","sourceRoot":"","sources":["../../src/cli/index-command.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,aAAa,EACb,YAAY,EACZ,SAAS,EACT,YAAY,GAEb,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AACvD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,MAAM,kCAAkC,CAAC;AACrE,OAAO,EAAE,qBAAqB,EAAE,MAAM,iCAAiC,CAAC;AASxE,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,OAA4B;IAChE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;IACnD,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;IAEnC,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;QACzB,MAAM,IAAI,GAAG,YAAY,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;QACxC,IAAI,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC;YACjE,UAAU,CAAC,4DAA4D,CAAC,CAAC;YACzE,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,IAAI,CAAC,UAAU,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACjC,UAAU,CAAC,yDAAyD,CAAC,CAAC;YACtE,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,OAAO,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,QAAQ,IAAI,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC;YACxF,UAAU,CAAC,0CAA0C,CAAC,CAAC;YACvD,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;YACvB,UAAU,CAAC,oEAAoE,CAAC,CAAC;YACjF,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,IAAI,KAAK,SAAS,IAAI,IAAI,KAAK,MAAM,EAAE,CAAC;YAC1C,UAAU,CAAC,4DAA4D,CAAC,CAAC;YACzE,OAAO,CAAC,CAAC;QACX,CAAC;QACD,MAAM,WAAW,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,KAAK,MAAM,IAAI,GAAG,KAAK,QAAQ,CAAC,CAAC;QAClG,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,UAAU,CAAC,4CAA4C,WAAW,CAAC,CAAC,CAAE,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC;YACrI,OAAO,CAAC,CAAC;QACX,CAAC;QACD,SAAS,CAAC,KAAK,EAAE,iBAAiB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,aAAa,CAAC,IAAI,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;QAC5F,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,OAAO,KAAK,MAAM,EAAE,CAAC;QACvB,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAC9E,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC;gBAC1C,KAAK;gBACL,UAAU,EAAE,YAAY,CAAC,IAAI,EAAE,YAAY,CAAC;gBAC5C,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC;gBAClC,KAAK,EAAE,KAAK;gBACZ,KAAK,EAAE,aAAa,CAAC,IAAI,EAAE,OAAO,CAAC;gBACnC,aAAa,EAAE,YAAY,CAAC,IAAI,EAAE,eAAe,CAAC;gBAClD,eAAe,EAAE,YAAY,CAAC,IAAI,EAAE,iBAAiB,CAAC;gBACtD,UAAU,EAAE,YAAY,CAAC,IAAI,EAAE,YAAY,CAAC;aAC7C,CAAC,CAAC;YACH,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,QAAQ,EAAE,CAAC;QACzB,IAAI,CAAC;YACH,OAAO,MAAM,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;gBACvE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,cAAc,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;gBAC3F,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;gBACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YAClC,CAAC,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,IAAI,qBAAqB,CAAC,KAAK,CAAC,KAAK,yBAAyB,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;gBACzF,UAAU,CAAC,GAAG,KAAK,CAAC,OAAO,iEAAiE,CAAC,CAAC;gBAC9F,OAAO,CAAC,CAAC;YACX,CAAC;YACD,MAAM,KAAK,CAAC;QACd,CAAC;IACH,CAAC;IAED,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;QAC1B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YAChE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACpF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,aAAa,EAAE,CAAC;QAC9B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACtF,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC;gBACtB,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;gBACzB,OAAO,CAAC,CAAC;YACX,CAAC;YACD,MAAM,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;YAChC,SAAS,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,UAAU,EAAE,EAAE,CAAC,UAAU,CAAC,IAAI,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAC;YACnI,OAAO,CAAC,CAAC;QACX,CAAC,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,KAAK,UAAU,EAAE,CAAC;QAC3B,OAAO,gBAAgB,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE;YACjE,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,YAAY,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,EAAE,CAAC,CAAC;YACzF,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YACzB,OAAO,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,CAAC,CAAC,CAAC;IACL,CAAC;IAED,UAAU,CAAC,mCAAmC,OAAO,IAAI,QAAQ,EAAE,CAAC,CAAC;IACrE,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;IAC1B,OAAO,CAAC,CAAC;AACX,CAAC"}

package/dist/cli/search-args.js

@@ -61,7 +61,7 @@ export function parseSearchArgs(argv) {
         else if (arg === "--no-include-default") {
             options["includeDefault"] = false;
         }
-        else if (arg === "--line-numbers" || arg === "--full-path" || arg === "--force" || arg === "--all" || arg === "--full" || arg === "--pull" || arg === "--update" || arg === "--embed" || arg === "--expand" || arg === "--rerank") {
+        else if (arg === "--line-numbers" || arg === "--full-path" || arg === "--force" || arg === "--all" || arg === "--full" || arg === "--pull" || arg === "--update" || arg === "--embed" || arg === "--expand" || arg === "--rerank" || arg === "--dry-run") {
             options[camelOption(arg)] = true;
         }
         else if (arg === "--no-rerank") {

package/dist/cli/search-args.js.map

@@ -1 +1 @@
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package/dist/cli/search-usage.js

@@ -4,6 +4,7 @@ export function searchUsage() {
   oms embed [--collection <name>] [--index <path>] [--force]
   oms index sync [--collection <name>] [--index <path>] [--force]
   oms index status [--index <path>]
+  oms index repair --mode rebuild|drop [--dry-run]
   oms index cleanup [--index <path>]
   oms index collections [name]
   oms index contexts

package/dist/cli/search-usage.js.map

@@ -1 +1 @@
-{"version":3,"file":"search-usage.js","sourceRoot":"","sources":["../../src/cli/search-usage.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,WAAW;IACzB,OAAO;;;;;;;;;;;;;;;;;;;;;iFAqBwE,CAAC;AAClF,CAAC"}
+{"version":3,"file":"search-usage.js","sourceRoot":"","sources":["../../src/cli/search-usage.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,WAAW;IACzB,OAAO;;;;;;;;;;;;;;;;;;;;;;iFAsBwE,CAAC;AAClF,CAAC"}

package/dist/kernel/engine/embed/repair.d.ts

@@ -0,0 +1,20 @@
+export type EngineStoreRepairMode = "rebuild" | "drop";
+export interface EngineStoreRepairPlan {
+    readonly mode: EngineStoreRepairMode;
+    readonly storePath: string;
+    readonly backupPath: string | null;
+    readonly reindexRequired: boolean;
+    readonly dryRun: boolean;
+}
+export interface RepairEngineStoreOptions {
+    readonly vault: string;
+    readonly mode: EngineStoreRepairMode;
+    readonly dryRun?: boolean;
+    readonly now?: () => Date;
+}
+/**
+ * This service owns only the engine SQLite file and its SQLite sidecars. It
+ * never opens a legacy store and never writes vault Markdown or authoritative
+ * `.oms` files (taxonomy, template-policy, types, or models).
+ */
+export declare function repairEngineStore(options: RepairEngineStoreOptions): EngineStoreRepairPlan;

package/dist/kernel/engine/embed/repair.js

@@ -0,0 +1,40 @@
+import { existsSync, renameSync } from "node:fs";
+import { openEngineStoreCore } from "./store.js";
+import { engineStorePath } from "../paths.js";
+/**
+ * This service owns only the engine SQLite file and its SQLite sidecars. It
+ * never opens a legacy store and never writes vault Markdown or authoritative
+ * `.oms` files (taxonomy, template-policy, types, or models).
+ */
+export function repairEngineStore(options) {
+    const storePath = engineStorePath(options.vault);
+    const backupPath = existsSync(storePath) ? backupStorePath(storePath, options.now?.() ?? new Date()) : null;
+    const plan = {
+        mode: options.mode,
+        storePath,
+        backupPath,
+        reindexRequired: true,
+        dryRun: options.dryRun === true,
+    };
+    if (options.dryRun)
+        return plan;
+    if (backupPath !== null)
+        moveStoreWithSidecars(storePath, backupPath);
+    if (options.mode === "rebuild") {
+        const store = openEngineStoreCore(storePath);
+        store.close();
+    }
+    return plan;
+}
+function backupStorePath(storePath, now) {
+    const timestamp = now.toISOString().replace(/[-:.]/gu, "").replace("Z", "Z");
+    return `${storePath}.backup-${timestamp}`;
+}
+function moveStoreWithSidecars(storePath, backupPath) {
+    renameSync(storePath, backupPath);
+    for (const suffix of ["-wal", "-shm"]) {
+        if (existsSync(`${storePath}${suffix}`))
+            renameSync(`${storePath}${suffix}`, `${backupPath}${suffix}`);
+    }
+}
+//# sourceMappingURL=repair.js.map

package/dist/kernel/engine/embed/repair.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"repair.js","sourceRoot":"","sources":["../../../../src/kernel/engine/embed/repair.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACjD,OAAO,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AACjD,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAmB9C;;;;GAIG;AACH,MAAM,UAAU,iBAAiB,CAAC,OAAiC;IACjE,MAAM,SAAS,GAAG,eAAe,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;IACjD,MAAM,UAAU,GAAG,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,SAAS,EAAE,OAAO,CAAC,GAAG,EAAE,EAAE,IAAI,IAAI,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC5G,MAAM,IAAI,GAA0B;QAClC,IAAI,EAAE,OAAO,CAAC,IAAI;QAClB,SAAS;QACT,UAAU;QACV,eAAe,EAAE,IAAI;QACrB,MAAM,EAAE,OAAO,CAAC,MAAM,KAAK,IAAI;KAChC,CAAC;IACF,IAAI,OAAO,CAAC,MAAM;QAAE,OAAO,IAAI,CAAC;IAEhC,IAAI,UAAU,KAAK,IAAI;QAAE,qBAAqB,CAAC,SAAS,EAAE,UAAU,CAAC,CAAC;IACtE,IAAI,OAAO,CAAC,IAAI,KAAK,SAAS,EAAE,CAAC;QAC/B,MAAM,KAAK,GAAG,mBAAmB,CAAC,SAAS,CAAC,CAAC;QAC7C,KAAK,CAAC,KAAK,EAAE,CAAC;IAChB,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAS,eAAe,CAAC,SAAiB,EAAE,GAAS;IACnD,MAAM,SAAS,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC;IAC7E,OAAO,GAAG,SAAS,WAAW,SAAS,EAAE,CAAC;AAC5C,CAAC;AAED,SAAS,qBAAqB,CAAC,SAAiB,EAAE,UAAkB;IAClE,UAAU,CAAC,SAAS,EAAE,UAAU,CAAC,CAAC;IAClC,KAAK,MAAM,MAAM,IAAI,CAAC,MAAM,EAAE,MAAM,CAAU,EAAE,CAAC;QAC/C,IAAI,UAAU,CAAC,GAAG,SAAS,GAAG,MAAM,EAAE,CAAC;YAAE,UAAU,CAAC,GAAG,SAAS,GAAG,MAAM,EAAE,EAAE,GAAG,UAAU,GAAG,MAAM,EAAE,CAAC,CAAC;IACzG,CAAC;AACH,CAAC"}

package/dist/kernel/engine/embed/store.d.ts

@@ -14,6 +14,12 @@ export declare const DEFAULT_SQLITE_VEC_LOADER: SqliteVecLoader;
 export interface EngineStoreCapabilities {
     readonly vecAvailable: boolean;
 }
+export type EngineStoreDiagnostic = "corrupt-or-incompatible";
+export declare class EngineStoreOpenError extends Error {
+    readonly diagnostic: EngineStoreDiagnostic;
+    constructor(diagnostic: EngineStoreDiagnostic, message: string, options?: ErrorOptions);
+}
+export declare function engineStoreDiagnostic(error: unknown): EngineStoreDiagnostic | null;
 export interface EmbeddingIdentity {
     readonly provider: string;
     readonly model: string;

package/dist/kernel/engine/embed/store.js

@@ -13,6 +13,17 @@ import * as sqliteVec from "sqlite-vec";
 import { ENGINE_EMBED_META_VERSION, validateEmbeddingIdentity, } from "./identity.js";
 export { ENGINE_EMBED_META_VERSION } from "./identity.js";
 export const DEFAULT_SQLITE_VEC_LOADER = (db) => sqliteVec.load(db);
+export class EngineStoreOpenError extends Error {
+    diagnostic;
+    constructor(diagnostic, message, options) {
+        super(message, options);
+        this.name = "EngineStoreOpenError";
+        this.diagnostic = diagnostic;
+    }
+}
+export function engineStoreDiagnostic(error) {
+    return error instanceof EngineStoreOpenError ? error.diagnostic : null;
+}
 // ---------------------------------------------------------------------------
 // Constants
 // ---------------------------------------------------------------------------
@@ -590,12 +601,12 @@ function openExistingCoreStore(dbPath) {
         db = new Database(dbPath, { fileMustExist: true });
     }
     catch (error) {
-        throw new Error(`Engine store is unavailable at "${dbPath}": ${error instanceof Error ? error.message : String(error)}`, { cause: error });
+        throw new EngineStoreOpenError("corrupt-or-incompatible", `Engine store is unavailable at "${dbPath}": ${error instanceof Error ? error.message : String(error)}`, { cause: error });
     }
     try {
         const rows = db.prepare("SELECT name FROM sqlite_master WHERE type = 'table' AND name IN (?, ?, ?)").all(...REQUIRED_CORE_TABLES);
         if (rows.length !== REQUIRED_CORE_TABLES.length) {
-            throw new Error(`Engine store at "${dbPath}" is corrupt or incompatible: required core tables are missing.`);
+            throw new EngineStoreOpenError("corrupt-or-incompatible", `Engine store at "${dbPath}" is corrupt or incompatible: required core tables are missing.`);
         }
         const metaColumns = new Set(db.prepare("PRAGMA table_info(engine_meta)").all().map((column) => column.name));
         const requiredMetaColumns = [
@@ -612,21 +623,21 @@ function openExistingCoreStore(dbPath) {
             "embedding_schema_version",
         ];
         if (requiredMetaColumns.some((column) => !metaColumns.has(column))) {
-            throw new Error(`Engine store at "${dbPath}" is corrupt or incompatible: required metadata columns are missing.`);
+            throw new EngineStoreOpenError("corrupt-or-incompatible", `Engine store at "${dbPath}" is corrupt or incompatible: required metadata columns are missing.`);
         }
         const version = db.prepare("SELECT embedding_schema_version FROM engine_meta WHERE id = 1")
             .get();
         if (!version || version.embedding_schema_version !== ENGINE_EMBED_META_VERSION) {
-            throw new Error(`Embedding metadata version "${version?.embedding_schema_version}" is incompatible; expected "${ENGINE_EMBED_META_VERSION}".`);
+            throw new EngineStoreOpenError("corrupt-or-incompatible", `Embedding metadata version "${version?.embedding_schema_version}" is incompatible; expected "${ENGINE_EMBED_META_VERSION}".`);
         }
         return db;
     }
     catch (error) {
         db.close();
-        if (error instanceof Error && error.message.startsWith(`Engine store at "${dbPath}"`)) {
+        if (error instanceof EngineStoreOpenError) {
             throw error;
         }
-        throw new Error(`Engine store at "${dbPath}" is corrupt or unreadable: ${error instanceof Error ? error.message : String(error)}`, { cause: error });
+        throw new EngineStoreOpenError("corrupt-or-incompatible", `Engine store at "${dbPath}" is corrupt or unreadable: ${error instanceof Error ? error.message : String(error)}`, { cause: error });
     }
 }
 function readonlyMutation(method) {