oh-my-codex 0.4.4 → 0.5.0

package/skills/research/SKILL.md

@@ -1,19 +1,19 @@
 ---
 name: research
-description: Orchestrate parallel scientist agents for comprehensive research with AUTO mode
+description: Orchestrate parallel researcher agents for comprehensive research with AUTO mode
 argument-hint: <research goal>
 ---
 
 # Research Skill
 
-Orchestrate parallel scientist agents for comprehensive research workflows with optional AUTO mode for fully autonomous execution.
+Orchestrate parallel researcher agents for comprehensive research workflows with optional AUTO mode for fully autonomous execution.
 
 ## Overview
 
 Research is a multi-stage workflow that decomposes complex research goals into parallel investigations:
 
 1. **Decomposition** - Break research goal into independent stages/hypotheses
-2. **Execution** - Run parallel scientist agents on each stage
+2. **Execution** - Run parallel researcher agents on each stage
 3. **Verification** - Cross-validate findings, check consistency
 4. **Synthesis** - Aggregate results into comprehensive report
 
@@ -57,19 +57,19 @@ When given a research goal, decompose into 3-7 independent stages:
 ...
 ```
 
-### Parallel Scientist Invocation
+### Parallel Researcher Invocation
 
 Fire independent stages in parallel via sub-agent spawning:
 
 ```
 // Stage 1 - Simple data gathering
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="haiku", prompt="[RESEARCH_STAGE:1] Investigate...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="haiku", prompt="[RESEARCH_STAGE:1] Investigate...")
 
 // Stage 2 - Standard analysis
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="sonnet", prompt="[RESEARCH_STAGE:2] Analyze...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="sonnet", prompt="[RESEARCH_STAGE:2] Analyze...")
 
 // Stage 3 - Complex reasoning
-spawn_sub_agent(subagent_type="oh-my-codex:scientist-high", model="opus", prompt="[RESEARCH_STAGE:3] Deep analysis of...")
+spawn_sub_agent(subagent_type="oh-my-codex:architect", model="opus", prompt="[RESEARCH_STAGE:3] Deep analysis of...")
 ```
 
 ### Smart Model Routing
@@ -78,9 +78,9 @@ spawn_sub_agent(subagent_type="oh-my-codex:scientist-high", model="opus", prompt
 
 | Task Complexity | Agent | Model | Use For |
 |-----------------|-------|-------|---------|
-| Data gathering | `scientist` (model=haiku) | haiku | File enumeration, pattern counting, simple lookups |
-| Standard analysis | `scientist` | sonnet | Code analysis, pattern detection, documentation review |
-| Complex reasoning | `scientist-high` | opus | Architecture analysis, cross-cutting concerns, hypothesis validation |
+| Data gathering | `researcher` (model=haiku) | haiku | File enumeration, pattern counting, simple lookups |
+| Standard analysis | `researcher` | sonnet | Code analysis, pattern detection, documentation review |
+| Complex reasoning | `architect` | opus | Architecture analysis, cross-cutting concerns, hypothesis validation |
 
 ### Routing Decision Guide
 
@@ -99,7 +99,7 @@ After parallel execution completes, verify findings:
 
 ```
 // Cross-validation stage
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="sonnet", prompt="
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="sonnet", prompt="
 [RESEARCH_VERIFICATION]
 Cross-validate these findings for consistency:
 
@@ -180,9 +180,9 @@ When stages analyze different data sources:
 
 ```
 // All fire simultaneously
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="haiku", prompt="[STAGE:1] Analyze src/api/...")
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="haiku", prompt="[STAGE:2] Analyze src/utils/...")
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="haiku", prompt="[STAGE:3] Analyze src/components/...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="haiku", prompt="[STAGE:1] Analyze src/api/...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="haiku", prompt="[STAGE:2] Analyze src/utils/...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="haiku", prompt="[STAGE:3] Analyze src/components/...")
 ```
 
 ### Hypothesis Battery (Parallel)
@@ -191,9 +191,9 @@ When testing multiple hypotheses:
 
 ```
 // Test hypotheses simultaneously
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="sonnet", prompt="[HYPOTHESIS:A] Test if caching improves...")
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="sonnet", prompt="[HYPOTHESIS:B] Test if batching reduces...")
-spawn_sub_agent(subagent_type="oh-my-codex:scientist", model="sonnet", prompt="[HYPOTHESIS:C] Test if lazy loading helps...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="sonnet", prompt="[HYPOTHESIS:A] Test if caching improves...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="sonnet", prompt="[HYPOTHESIS:B] Test if batching reduces...")
+spawn_sub_agent(subagent_type="oh-my-codex:researcher", model="sonnet", prompt="[HYPOTHESIS:C] Test if lazy loading helps...")
 ```
 
 ### Cross-Validation (Sequential)
@@ -205,7 +205,7 @@ When verification depends on all findings:
 [stages complete]
 
 // Then sequential verification
-spawn_sub_agent(subagent_type="oh-my-codex:scientist-high", model="opus", prompt="
+spawn_sub_agent(subagent_type="oh-my-codex:architect", model="opus", prompt="
 [CROSS_VALIDATION]
 Validate consistency across all findings:
 - Finding 1: ...
@@ -216,7 +216,7 @@ Validate consistency across all findings:
 
 ### Concurrency Limit
 
-**Maximum 20 concurrent scientist agents** to prevent resource exhaustion.
+**Maximum 20 concurrent researcher agents** to prevent resource exhaustion.
 
 If more than 20 stages, batch them:
 ```
@@ -237,7 +237,7 @@ Batch 2: Stages 6-7 (parallel)
     stage-2.md            # Stage 2 findings
     ...
   findings/
-    raw/                  # Raw findings from scientists
+    raw/                  # Raw findings from researchers
     verified/             # Post-verification findings
   figures/
     figure-1.png          # Generated visualizations
@@ -289,7 +289,7 @@ Batch 2: Stages 6-7 (parallel)
 
 ## Tag Extraction
 
-Scientists use structured tags for findings. Extract them with these patterns:
+Research agents use structured tags for findings. Extract them with these patterns:
 
 ### Finding Tags
 
@@ -427,7 +427,7 @@ Findings must meet quality threshold:
 
 ### Figure Embedding Protocol
 
-Scientists generate visualizations using this marker:
+Research agents generate visualizations using this marker:
 
 ```
 [FIGURE:path/to/figure.png]
@@ -452,11 +452,11 @@ Report generator embeds figures:
 
 | Type | Use For | Generated By |
 |------|---------|--------------|
-| Architecture diagram | System structure | scientist-high |
-| Flow chart | Process flows | scientist |
-| Dependency graph | Module relationships | scientist |
-| Timeline | Sequence of events | scientist |
-| Comparison table | A vs B analysis | scientist |
+| Architecture diagram | System structure | architect |
+| Flow chart | Process flows | researcher |
+| Dependency graph | Module relationships | researcher |
+| Timeline | Sequence of events | researcher |
+| Comparison table | A vs B analysis | researcher |
 
 ## Configuration
 
@@ -489,7 +489,7 @@ Progress is preserved in `.omx/research/{session-id}/` for resume.
 - Review state.json for specific conflicts
 - May need to re-run specific stages with different approach
 
-**Scientists returning low-quality findings?**
+**Research agents returning low-quality findings?**
 - Check tier assignment - complex analysis needs HIGH tier
 - Ensure prompts include clear scope and expected output format
 - Review if research goal is too broad

package/skills/security-review/SKILL.md

@@ -256,11 +256,11 @@ The security-reviewer agent verifies:
 
 ## Use with Other Skills
 
-**With Pipeline:**
+**With Team:**
 ```
-/pipeline security "review authentication module"
+/team "run security review on authentication module"
 ```
-Uses: explore → security-reviewer → executor → security-reviewer-low (re-verify)
+Uses: explore → security-reviewer → executor → security-reviewer (re-verify)
 
 **With Swarm:**
 ```

package/templates/AGENTS.md

@@ -39,7 +39,7 @@ Use delegation when it improves quality, speed, or correctness:
 Work directly only for trivial operations where delegation adds disproportionate overhead:
 - Small clarifications, quick status checks, or single-command sequential operations.
 
-For substantive code changes, delegate to `executor` (default for both standard and complex implementation work; `deep-executor` is deprecated).
+For substantive code changes, delegate to `executor` (default for both standard and complex implementation work).
 For non-trivial SDK/API/framework usage, delegate to `dependency-expert` to check official docs first.
 </delegation_rules>
 
@@ -106,7 +106,6 @@ Build/Analysis Lane:
 - `/prompts:architect`: System design, boundaries, interfaces, long-horizon tradeoffs
 - `/prompts:debugger`: Root-cause analysis, regression isolation, failure diagnosis
 - `/prompts:executor`: Code implementation, refactoring, feature work
-- `/prompts:deep-executor`: Deprecated — use `/prompts:executor` for complex autonomous goal-oriented tasks
 - `/prompts:verifier`: Completion evidence, claim validation, test adequacy
 
 Review Lane:
@@ -125,7 +124,6 @@ Domain Specialists:
 - `/prompts:designer`: UX/UI architecture, interaction design
 - `/prompts:writer`: Docs, migration notes, user guidance
 - `/prompts:qa-tester`: Interactive CLI/service runtime validation
-- `/prompts:scientist`: Data/statistical analysis
 - `/prompts:git-master`: Commit strategy, history hygiene
 - `/prompts:researcher`: External documentation and reference research
 
@@ -154,10 +152,8 @@ Do not ask for confirmation — just read the skill file and follow its instruct
 | "plan this", "plan the", "let's plan" | `$plan` | Read `~/.agents/skills/plan/SKILL.md`, start planning workflow |
 | "ralplan", "consensus plan" | `$ralplan` | Read `~/.agents/skills/ralplan/SKILL.md`, start consensus planning |
 | "team", "swarm", "coordinated team", "coordinated swarm" | `$team` | Read `~/.agents/skills/team/SKILL.md`, start team orchestration (swarm compatibility alias) |
-| "pipeline", "chain agents" | `$pipeline` | Read `~/.agents/skills/pipeline/SKILL.md`, start agent pipeline |
 | "ecomode", "eco", "budget" | `$ecomode` | Read `~/.agents/skills/ecomode/SKILL.md`, enable token-efficient mode |
 | "research", "analyze data" | `$research` | Read `~/.agents/skills/research/SKILL.md`, start parallel research |
-| "deepinit" | `$deepinit` | Read `~/.agents/skills/deepinit/SKILL.md`, initialize codebase docs |
 | "cancel", "stop", "abort" | `$cancel` | Read `~/.agents/skills/cancel/SKILL.md`, cancel active modes |
 | "tdd", "test first" | `$tdd` | Read `~/.agents/skills/tdd/SKILL.md`, start test-driven workflow |
 | "fix build", "type errors" | `$build-fix` | Read `~/.agents/skills/build-fix/SKILL.md`, fix build errors |
@@ -183,12 +179,10 @@ Workflow Skills:
 - `ecomode`: Token-efficient execution using lightweight models
 - `team`: N coordinated agents on shared task list
 - `swarm`: N coordinated agents on shared task list (compatibility facade over team)
-- `pipeline`: Sequential agent chaining with data passing
 - `ultraqa`: QA cycling -- test, verify, fix, repeat
 - `plan`: Strategic planning with optional consensus mode
 - `ralplan`: Iterative consensus planning (planner + architect + critic)
 - `research`: Parallel research agents for comprehensive analysis
-- `deepinit`: Deep codebase initialization with documentation
 
 Agent Shortcuts:
 - `analyze` -> debugger: Investigation and root-cause analysis
@@ -349,7 +343,6 @@ Recommended mode fields:
 - `ultrawork`: `active`, `reinforcement_count`, `started_at`
 - `team`: `active`, `current_phase` (`team-plan|team-prd|team-exec|team-verify|team-fix|complete`), `agent_count`, `team_name`
 - `ecomode`: `active`
-- `pipeline`: `active`, `current_phase`, `started_at`, `completed_at`
 - `ultraqa`: `active`, `current_phase`, `iteration`, `started_at`, `completed_at`
 </state_management>
 

package/templates/catalog-manifest.json

@@ -0,0 +1,397 @@
+{
+  "schemaVersion": 1,
+  "catalogVersion": "2026.02.20.1",
+  "skills": [
+    {
+      "name": "autopilot",
+      "category": "execution",
+      "status": "active",
+      "core": true,
+      "internalRequired": false
+    },
+    {
+      "name": "ralph",
+      "category": "execution",
+      "status": "active",
+      "core": true,
+      "internalRequired": false
+    },
+    {
+      "name": "ultrawork",
+      "category": "execution",
+      "status": "active",
+      "core": true,
+      "internalRequired": false
+    },
+    {
+      "name": "team",
+      "category": "execution",
+      "status": "active",
+      "core": true,
+      "internalRequired": false
+    },
+    {
+      "name": "ecomode",
+      "category": "execution",
+      "status": "merged",
+      "canonical": "ultrawork",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "ultraqa",
+      "category": "execution",
+      "status": "merged",
+      "canonical": "ralph",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "swarm",
+      "category": "execution",
+      "status": "alias",
+      "canonical": "team",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "plan",
+      "category": "planning",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "ralplan",
+      "category": "planning",
+      "status": "active",
+      "canonical": "plan",
+      "core": true,
+      "internalRequired": false
+    },
+    {
+      "name": "analyze",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "debugger",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "deepsearch",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "explore",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "tdd",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "test-engineer",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "build-fix",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "build-fixer",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "code-review",
+      "category": "shortcut",
+      "status": "active",
+      "canonical": "code-reviewer",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "security-review",
+      "category": "shortcut",
+      "status": "active",
+      "canonical": "security-reviewer",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "frontend-ui-ux",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "designer",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "git-master",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "git-master",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "review",
+      "category": "shortcut",
+      "status": "alias",
+      "canonical": "plan --review",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "cancel",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "doctor",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "help",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "note",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "trace",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "skill",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "research",
+      "category": "utility",
+      "status": "merged",
+      "canonical": "researcher",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "hud",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "omx-setup",
+      "category": "utility",
+      "status": "active",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "configure-telegram",
+      "category": "utility",
+      "status": "merged",
+      "canonical": "omx-setup",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "configure-discord",
+      "category": "utility",
+      "status": "merged",
+      "canonical": "omx-setup",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "ralph-init",
+      "category": "utility",
+      "status": "merged",
+      "canonical": "plan",
+      "core": false,
+      "internalRequired": false
+    },
+    {
+      "name": "worker",
+      "category": "utility",
+      "status": "internal",
+      "core": false,
+      "internalRequired": true
+    }
+  ],
+  "agents": [
+    {
+      "name": "explore",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "analyst",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "planner",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "architect",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "debugger",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "executor",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "verifier",
+      "category": "build",
+      "status": "active"
+    },
+    {
+      "name": "style-reviewer",
+      "category": "review",
+      "status": "merged",
+      "canonical": "code-reviewer"
+    },
+    {
+      "name": "quality-reviewer",
+      "category": "review",
+      "status": "merged",
+      "canonical": "code-reviewer"
+    },
+    {
+      "name": "api-reviewer",
+      "category": "review",
+      "status": "merged",
+      "canonical": "code-reviewer"
+    },
+    {
+      "name": "security-reviewer",
+      "category": "review",
+      "status": "active"
+    },
+    {
+      "name": "performance-reviewer",
+      "category": "review",
+      "status": "merged",
+      "canonical": "code-reviewer"
+    },
+    {
+      "name": "code-reviewer",
+      "category": "review",
+      "status": "active"
+    },
+    {
+      "name": "dependency-expert",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "test-engineer",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "quality-strategist",
+      "category": "domain",
+      "status": "merged",
+      "canonical": "verifier"
+    },
+    {
+      "name": "build-fixer",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "designer",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "writer",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "qa-tester",
+      "category": "domain",
+      "status": "merged",
+      "canonical": "test-engineer"
+    },
+    {
+      "name": "git-master",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "code-simplifier",
+      "category": "domain",
+      "status": "internal"
+    },
+    {
+      "name": "researcher",
+      "category": "domain",
+      "status": "active"
+    },
+    {
+      "name": "product-manager",
+      "category": "product",
+      "status": "merged",
+      "canonical": "analyst"
+    },
+    {
+      "name": "ux-researcher",
+      "category": "product",
+      "status": "merged",
+      "canonical": "designer"
+    },
+    {
+      "name": "information-architect",
+      "category": "product",
+      "status": "merged",
+      "canonical": "designer"
+    },
+    {
+      "name": "product-analyst",
+      "category": "product",
+      "status": "merged",
+      "canonical": "analyst"
+    },
+    {
+      "name": "critic",
+      "category": "coordination",
+      "status": "active"
+    },
+    {
+      "name": "vision",
+      "category": "coordination",
+      "status": "active"
+    }
+  ]
+}

package/prompts/deep-executor.md

@@ -1,19 +0,0 @@
----
-description: "DEPRECATED: deep-executor now aliases to executor"
-argument-hint: "task description"
----
-## Deprecation Notice
-
-`/prompts:deep-executor` is deprecated.
-
-Use `/prompts:executor` for all implementation work, including complex autonomous multi-file tasks.
-
-## Compatibility Behavior
-
-If invoked through `deep-executor`, continue by following the **Executor** prompt behavior exactly:
-- Explore first
-- Implement end-to-end
-- Verify with diagnostics/tests/build evidence
-- Deliver concise completion summary
-
-Do not maintain separate deep-executor-only behavior.