oh-my-codex 0.17.0 → 0.17.2

package/dist/cli/ralph.js

@@ -172,55 +172,7 @@ function buildRalphApprovedContextLines(approvedHint) {
         lines.push('Approved repository context summary (bounded, inspectable):');
         lines.push(approvedHint.repositoryContextSummary.content);
     }
-    if (approvedHint.contextPackStatus === 'ready') {
-        if (approvedHint.contextPack) {
-            lines.push(`- approved context pack: ${approvedHint.contextPack.path}`);
-        }
-        if (approvedHint.contextPackRoleRefs) {
-            const { build, verify, scope } = approvedHint.contextPackRoleRefs;
-            if (build.length > 0) {
-                lines.push(`- build refs (read first): ${build.join(', ')}`);
-            }
-            if (verify.length > 0) {
-                lines.push(`- verify refs: ${verify.join(', ')}`);
-            }
-            if (scope.length > 0) {
-                lines.push(`- scope refs: ${scope.join(', ')}`);
-            }
-            if (build.length > 0 || verify.length > 0 || scope.length > 0) {
-                lines.push(build.length > 0
-                    ? '- Read the build refs above before broader repo exploration.'
-                    : '- Read the approved refs above before broader repo exploration.');
-            }
-        }
-        return lines;
-    }
-    if (approvedHint.contextPackStatus === 'plan-only') {
-        lines.push('- context pack: not declared in the approved plan; using the pre-context-pack plan-only handoff baseline.');
-        lines.push('- Plan-only fallback: use the approved plan, matching test specs, and any deep-interview artifacts as repair inputs; do not treat this as approved context-bearing execution.');
-        return lines;
-    }
-    if (approvedHint.contextPackStatus === 'incomplete') {
-        if (approvedHint.contextPackIssues.length > 0) {
-            lines.push(`- incomplete context pack issues: ${approvedHint.contextPackIssues.join(' | ')}`);
-        }
-        if (approvedHint.missingRequiredContextPackRoles.length > 0) {
-            lines.push(`- missing required context roles: ${approvedHint.missingRequiredContextPackRoles.join(', ')}`);
-        }
-        lines.push('- Incomplete-pack fallback: use the approved plan, matching test specs, and any deep-interview artifacts only as repair inputs; repair or recreate the canonical context pack with required role coverage before broadening context.');
-        return lines;
-    }
-    if (approvedHint.contextPackStatus === 'invalid') {
-        if (approvedHint.contextPackIssues.length > 0) {
-            lines.push(`- invalid context pack issues: ${approvedHint.contextPackIssues.join(' | ')}`);
-        }
-        lines.push('- Invalid-pack fallback: use the approved plan, matching test specs, and any deep-interview artifacts only as repair inputs; repair or recreate the canonical context pack before broadening context.');
-        return lines;
-    }
-    if (approvedHint.contextPackIssues.length > 0) {
-        lines.push(`- missing-baseline issues: ${approvedHint.contextPackIssues.join(' | ')}`);
-    }
-    lines.push('- Missing-baseline fallback: the latest approved plan is missing its matching test spec, so use the surfaced plan as lineage guidance only and restore the missing baseline before broadening context.');
+    lines.push('- Approved execution baseline is ready: use the approved plan, matching test specs, and any deep-interview artifacts as execution inputs.');
     return lines;
 }
 export function normalizeRalphCliArgs(args) {

package/dist/cli/ralph.js.map

@@ -1 +1 @@
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package/dist/cli/setup.d.ts

@@ -21,6 +21,7 @@ interface SetupOptions {
     pluginAgentsMdPrompt?: (destinationPath: string) => Promise<boolean>;
     pluginDeveloperInstructionsPrompt?: (configPath: string) => Promise<boolean>;
     pluginDeveloperInstructionsOverwritePrompt?: (configPath: string) => Promise<boolean>;
+    firstPartyMcpRemovalPrompt?: (configPath: string, registrationKinds: string[]) => Promise<boolean>;
     mcpRegistryCandidates?: string[];
 }
 export { SETUP_INSTALL_MODES, SETUP_MCP_MODES, SETUP_SCOPES };

package/dist/cli/setup.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../src/cli/setup.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAmFH,OAAO,EACN,mBAAmB,EACnB,eAAe,EACf,YAAY,EAGZ,KAAK,mBAAmB,EACxB,KAAK,gBAAgB,EACrB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,MAAM,wBAAwB,CAAC;AAwChC,UAAU,YAAY;IACrB,kBAAkB,CAAC,EAAE,MAAM,MAAM,GAAG,IAAI,CAAC;IACzC,iBAAiB,CAAC,EAAE,MAAM,MAAM,GAAG,IAAI,CAAC;IACxC,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,WAAW,CAAC,EAAE,gBAAgB,CAAC;IAC/B,OAAO,CAAC,EAAE,YAAY,CAAC;IACvB,KAAK,CAAC,EAAE,UAAU,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,qBAAqB,CAAC,EAAE,CAAC,eAAe,EAAE,MAAM,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;IACtE,gBAAgB,CAAC,EAAE,CAAC,YAAY,EAAE,UAAU,KAAK,OAAO,CAAC,UAAU,CAAC,CAAC;IACrE,0BAA0B,CAAC,EAAE,CAC5B,WAAW,EAAE,OAAO,CAAC,mBAAmB,CAAC,KACrC,OAAO,CAAC,4BAA4B,CAAC,CAAC;IAC3C,iBAAiB,CAAC,EAAE,CACnB,WAAW,EAAE,gBAAgB,KACzB,OAAO,CAAC,gBAAgB,CAAC,CAAC;IAC/B,kBAAkB,CAAC,EAAE,CACpB,YAAY,EAAE,MAAM,EACpB,WAAW,EAAE,MAAM,KACf,OAAO,CAAC,OAAO,CAAC,CAAC;IACtB,oBAAoB,CAAC,EAAE,CAAC,eAAe,EAAE,MAAM,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;IACrE,iCAAiC,CAAC,EAAE,CAAC,UAAU,EAAE,MAAM,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;IAC7E,0CAA0C,CAAC,EAAE,CAC5C,UAAU,EAAE,MAAM,KACd,OAAO,CAAC,OAAO,CAAC,CAAC;IACtB,0BAA0B,CAAC,EAAE,CAC5B,UAAU,EAAE,MAAM,EAClB,iBAAiB,EAAE,MAAM,EAAE,KACvB,OAAO,CAAC,OAAO,CAAC,CAAC;IACtB,qBAAqB,CAAC,EAAE,MAAM,EAAE,CAAC;CACjC;AAED,OAAO,EAAE,mBAAmB,EAAE,eAAe,EAAE,YAAY,EAAE,CAAC;AAC9D,YAAY,EAAE,gBAAgB,EAAE,YAAY,EAAE,UAAU,EAAE,CAAC;AAE3D,MAAM,WAAW,gBAAgB;IAChC,eAAe,EAAE,MAAM,CAAC;IACxB,YAAY,EAAE,MAAM,CAAC;IACrB,cAAc,EAAE,MAAM,CAAC;IACvB,eAAe,EAAE,MAAM,CAAC;IACxB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;CAClB;AAED,UAAU,oBAAoB;IAC7B,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CAChB;AAUD,UAAU,kBAAkB;IAC3B,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;CACjB;AAaD,MAAM,WAAW,wBAAwB;IACxC,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;CACpB;AA2ED,KAAK,4BAA4B,GAAG,MAAM,GAAG,QAAQ,GAAG,OAAO,CAAC;AAqJhE,wBAAgB,qBAAqB,CACpC,OAAO,EAAE,MAAM,EACf,QAAQ,SAAa,GACnB,wBAAwB,CA6C1B;AAED,wBAAsB,iBAAiB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAG1E;AAsDD,wBAAgB,uBAAuB,CACtC,KAAK,EAAE,UAAU,EACjB,WAAW,EAAE,MAAM,GACjB,gBAAgB,CAoBlB;AAgmCD,wBAAsB,KAAK,CAAC,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CA44BrE;AAggBD,wBAAsB,aAAa,CAClC,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,aAAa,EAAE,kBAAkB,EACjC,OAAO,EAAE,YAAY,GACnB,OAAO,CAAC,oBAAoB,CAAC,CAqH/B"}

package/dist/cli/setup.js

@@ -9,7 +9,7 @@ import { spawnSync } from "child_process";
 import { createInterface } from "readline/promises";
 import { homedir } from "os";
 import { codexHome, codexConfigPath, codexPromptsDir, codexAgentsDir, userSkillsDir, omxStateDir, detectLegacySkillRootOverlap, omxPlansDir, omxLogsDir, } from "../utils/paths.js";
-import { buildMergedConfig, getRootModelName, getRootTomlArray, hasLegacyOmxTeamRunTable, isOmxManagedNotifyCommand, sanitizePreviousNotifyCommand, stripExistingOmxBlocks, stripExistingSharedMcpRegistryBlock, mergeSharedMcpRegistryBlock, stripOmxEnvSettings, stripOmxFeatureFlags, stripOmxSeededBehavioralDefaults, upsertPluginModeRuntimeFeatureFlags, upsertManagedCodexHookTrustState, stripManagedCodexHookTrustState, OMX_PLUGIN_DEVELOPER_INSTRUCTIONS, } from "../config/generator.js";
+import { buildMergedConfig, getRootModelName, getRootTomlArray, hasLegacyOmxTeamRunTable, isOmxManagedNotifyCommand, sanitizePreviousNotifyCommand, stripExistingOmxBlocks, stripExistingSharedMcpRegistryBlock, mergeSharedMcpRegistryBlock, stripOmxEnvSettings, stripOmxFeatureFlags, stripOmxSeededBehavioralDefaults, upsertPluginModeRuntimeFeatureFlags, upsertManagedCodexHookTrustState, stripManagedCodexHookTrustState, OMX_PLUGIN_DEVELOPER_INSTRUCTIONS, hasFirstPartyOmxMcpRegistrations, extractFirstPartyOmxMcpSections, stripFirstPartyOmxMcpSections, } from "../config/generator.js";
 import { buildManagedCodexNativeHookWindowsShimContent, buildManagedCodexNativeHookWindowsShimPath, mergeManagedCodexHooksConfig, } from "../config/codex-hooks.js";
 import { getLegacyUnifiedMcpRegistryCandidate, getUnifiedMcpRegistryCandidates, loadUnifiedMcpRegistry, planClaudeCodeMcpSettingsSync, } from "../config/mcp-registry.js";
 import { generateAgentToml } from "../agents/native-config.js";
@@ -23,7 +23,7 @@ import { DEFAULT_FRONTIER_MODEL } from "../config/models.js";
 import { addGeneratedAgentsMarker, hasOmxManagedAgentsSections, isOmxGeneratedAgentsMd, upsertManagedAgentsBlock, } from "../utils/agents-md.js";
 import { DEFAULT_HUD_CONFIG } from "../hud/types.js";
 import { SETUP_INSTALL_MODES, SETUP_MCP_MODES, SETUP_SCOPES, getSetupScopeFilePath, readPersistedSetupPreferences, } from "./setup-preferences.js";
-import { OMX_LOCAL_MARKETPLACE_NAME, OMX_PLUGIN_NAME, materializePackagedOmxPluginCache, resolvePackagedOmxMarketplace, upsertLocalOmxMarketplaceRegistration, upsertLocalOmxPluginEnablement, upsertLocalOmxPluginMcpServerEnablement, } from "./plugin-marketplace.js";
+import { OMX_LOCAL_MARKETPLACE_NAME, OMX_PLUGIN_NAME, materializePackagedOmxPluginCache, resolvePackagedOmxMarketplace, upsertLocalOmxMarketplaceRegistration, upsertLocalOmxPluginEnablement, upsertLocalOmxPluginMcpServerEnablement, hasLocalOmxPluginMcpServerRegistrations, } from "./plugin-marketplace.js";
 import { resolveCodexHookFeatureFlagForCli } from "./codex-feature-probe.js";
 async function resolveStatusLinePresetForSetup(projectRoot, options) {
     if (options.force) {
@@ -349,6 +349,28 @@ async function promptForSetupInstallMode(defaultMode) {
         rl.close();
     }
 }
+async function promptForFirstPartyMcpRemoval(configPath, registrationKinds) {
+    if (!process.stdin.isTTY || !process.stdout.isTTY) {
+        return false;
+    }
+    const rl = createInterface({
+        input: process.stdin,
+        output: process.stdout,
+    });
+    try {
+        console.log("Deprecated first-party OMX MCP registration detected:");
+        console.log(`  ${configPath}`);
+        console.log(`  ${registrationKinds.join(", ")}`);
+        console.log("  OMX is CLI-first by default now; first-party MCP compatibility is legacy/explicit.");
+        const answer = (await rl.question("Remove first-party OMX MCP registrations now? [y/N]: "))
+            .trim()
+            .toLowerCase();
+        return answer === "y" || answer === "yes";
+    }
+    finally {
+        rl.close();
+    }
+}
 function hasPersistedSetupPreferences(preferences) {
     return Boolean(preferences?.scope || preferences?.installMode);
 }
@@ -902,7 +924,7 @@ function insertRootTomlKey(config, line) {
     const after = lines.slice(firstTableIndex);
     return [...before, line, "", ...after].join("\n") + "\n";
 }
-async function ensurePluginMarketplaceRegistration(configPath, pkgRoot, mcpMode, backupContext, summary, options) {
+async function ensurePluginMarketplaceRegistration(configPath, pkgRoot, mcpMode, removeFirstPartyMcp, backupContext, summary, options) {
     const packagedMarketplace = await resolvePackagedOmxMarketplace(pkgRoot);
     if (!packagedMarketplace) {
         summary.skipped += 1;
@@ -911,7 +933,7 @@ async function ensurePluginMarketplaceRegistration(configPath, pkgRoot, mcpMode,
     const existingConfig = existsSync(configPath)
         ? await readFile(configPath, "utf-8")
         : "";
-    const nextConfig = upsertLocalOmxMarketplaceRegistration(upsertLocalOmxPluginMcpServerEnablement(upsertLocalOmxPluginEnablement(existingConfig), mcpMode === "compat"), pkgRoot);
+    const nextConfig = upsertLocalOmxMarketplaceRegistration(upsertLocalOmxPluginMcpServerEnablement(upsertLocalOmxPluginEnablement(existingConfig), mcpMode === "compat", { removeWhenDisabled: removeFirstPartyMcp }), pkgRoot);
     const destinationExists = existsSync(configPath);
     if (nextConfig === existingConfig) {
         summary.unchanged += 1;
@@ -997,7 +1019,11 @@ async function cleanupPluginModeLegacyConfig(configPath, backupContext, options)
     if (!existsSync(configPath))
         return false;
     const original = await readFile(configPath, "utf-8");
+    const preservedFirstPartyMcp = options.preserveFirstPartyMcp
+        ? extractFirstPartyOmxMcpSections(original)
+        : "";
     let config = original;
+    config = stripFirstPartyOmxMcpSections(config);
     config = stripExistingOmxBlocks(config).cleaned;
     config = stripExistingSharedMcpRegistryBlock(config).cleaned;
     config = stripPluginModeLegacyRootDefaults(config);
@@ -1005,6 +1031,9 @@ async function cleanupPluginModeLegacyConfig(configPath, backupContext, options)
     config = stripOmxFeatureFlags(config);
     config = stripManagedCodexHookTrustState(config);
     config = stripOmxEnvSettings(config);
+    if (preservedFirstPartyMcp) {
+        config = `${config.trimEnd()}\n\n${preservedFirstPartyMcp}\n`;
+    }
     config = config.trim();
     const nextConfig = config.length > 0 ? `${config}\n` : "";
     if (nextConfig === original)
@@ -1043,7 +1072,7 @@ async function cleanupPluginModeLegacyAgentsMd(agentsMdPath, backupContext, opti
     return true;
 }
 export async function setup(options = {}) {
-    const { force = false, dryRun = false, installMode: requestedInstallMode, mcpMode: requestedMcpMode, scope: requestedScope, verbose = false, setupScopePrompt, persistedSetupReviewPrompt, installModePrompt, modelUpgradePrompt, pluginAgentsMdPrompt, pluginDeveloperInstructionsPrompt, pluginDeveloperInstructionsOverwritePrompt, } = options;
+    const { force = false, dryRun = false, installMode: requestedInstallMode, mcpMode: requestedMcpMode, scope: requestedScope, verbose = false, setupScopePrompt, persistedSetupReviewPrompt, installModePrompt, modelUpgradePrompt, pluginAgentsMdPrompt, pluginDeveloperInstructionsPrompt, pluginDeveloperInstructionsOverwritePrompt, firstPartyMcpRemovalPrompt, } = options;
     const pkgRoot = getPackageRoot();
     const projectRoot = process.cwd();
     const persistedPreferences = await readPersistedSetupPreferences(projectRoot, { warnOnLegacyScope: true });
@@ -1072,6 +1101,29 @@ export async function setup(options = {}) {
     const resolvedInstallMode = await resolveSetupInstallMode(projectRoot, resolvedScope.scope, requestedInstallMode, installModePrompt, persistedReviewDecision, persistedPreferences);
     const resolvedMcpMode = resolveSetupMcpMode(resolvedScope.scope, requestedMcpMode, persistedReviewDecision, persistedPreferences);
     const scopeDirs = resolveScopeDirectories(resolvedScope.scope, projectRoot);
+    const existingConfigForMcpMigration = existsSync(scopeDirs.codexConfigFile)
+        ? await readFile(scopeDirs.codexConfigFile, "utf-8")
+        : "";
+    const firstPartyMcpRegistrationKinds = [
+        hasFirstPartyOmxMcpRegistrations(existingConfigForMcpMigration)
+            ? "config.toml [mcp_servers.omx_*]"
+            : null,
+        hasLocalOmxPluginMcpServerRegistrations(existingConfigForMcpMigration)
+            ? "plugin mcp_servers overrides"
+            : null,
+    ].filter((kind) => typeof kind === "string");
+    let removeFirstPartyMcpRegistrations = false;
+    const shouldOfferFirstPartyMcpRemoval = resolvedMcpMode.mcpMode !== "compat" &&
+        firstPartyMcpRegistrationKinds.length > 0;
+    if (shouldOfferFirstPartyMcpRemoval) {
+        const canPrompt = typeof firstPartyMcpRemovalPrompt === "function" ||
+            (process.stdin.isTTY && process.stdout.isTTY);
+        if (canPrompt) {
+            removeFirstPartyMcpRegistrations = firstPartyMcpRemovalPrompt
+                ? await firstPartyMcpRemovalPrompt(scopeDirs.codexConfigFile, firstPartyMcpRegistrationKinds)
+                : await promptForFirstPartyMcpRemoval(scopeDirs.codexConfigFile, firstPartyMcpRegistrationKinds);
+        }
+    }
     const scopeSourceMessage = resolvedScope.source === "persisted" ? " (from .omx/setup-scope.json)" : "";
     const backupContext = getBackupContext(resolvedScope.scope, projectRoot);
     const isPluginInstallMode = resolvedInstallMode?.installMode === "plugin";
@@ -1101,6 +1153,14 @@ export async function setup(options = {}) {
         ? " (from .omx/setup-scope.json)"
         : "";
     console.log(`Using setup MCP mode: ${resolvedMcpMode.mcpMode}${mcpModeSourceMessage}\n`);
+    if (shouldOfferFirstPartyMcpRemoval) {
+        if (removeFirstPartyMcpRegistrations) {
+            console.log("Deprecated first-party OMX MCP registrations will be removed from config.toml during this setup run.\n");
+        }
+        else {
+            console.log("warning: deprecated first-party OMX MCP registrations were detected but preserved. OMX supports CLI-first setup by default; rerun interactively and answer yes to remove them, or use --mcp compat only when explicit MCP compatibility is required.\n");
+        }
+    }
     // Step 1: Ensure directories exist
     console.log("[1/8] Creating directories...");
     const dirs = isPluginInstallMode
@@ -1270,14 +1330,19 @@ export async function setup(options = {}) {
         console.log(`  warning: ${warning}`);
     }
     if (isPluginInstallMode) {
-        const configCleaned = await cleanupPluginModeLegacyConfig(scopeDirs.codexConfigFile, backupContext, { dryRun, verbose });
+        const configCleaned = await cleanupPluginModeLegacyConfig(scopeDirs.codexConfigFile, backupContext, {
+            dryRun,
+            verbose,
+            preserveFirstPartyMcp: shouldOfferFirstPartyMcpRemoval &&
+                !removeFirstPartyMcpRegistrations,
+        });
         if (configCleaned)
             summary.config.removed += 1;
         console.log(configCleaned
             ? `  ${dryRun ? "Would clean" : "Cleaned"} legacy OMX config entries for plugin mode.\n`
             : "  Config refresh skipped; no legacy OMX config entries found.\n");
         await applyPluginModeHooksConfig(scopeDirs.codexConfigFile, scopeDirs.codexHooksFile, pkgRoot, scopeDirs.codexHomeDir, backupContext, summary.config, { dryRun, verbose, codexHookFeatureFlag });
-        const pluginMarketplaceResult = await ensurePluginMarketplaceRegistration(scopeDirs.codexConfigFile, pkgRoot, resolvedMcpMode.mcpMode, backupContext, summary.config, { dryRun, verbose });
+        const pluginMarketplaceResult = await ensurePluginMarketplaceRegistration(scopeDirs.codexConfigFile, pkgRoot, resolvedMcpMode.mcpMode, removeFirstPartyMcpRegistrations, backupContext, summary.config, { dryRun, verbose });
         if (pluginMarketplaceResult === "unavailable") {
             console.log(`  warning: packaged ${OMX_LOCAL_MARKETPLACE_NAME} Codex plugin marketplace metadata not found; /skills plugin discovery was not registered.`);
         }
@@ -1337,7 +1402,7 @@ export async function setup(options = {}) {
     }
     else {
         const statusLinePreset = await resolveStatusLinePresetForSetup(projectRoot, { force });
-        const managedConfig = await updateManagedConfig(scopeDirs.codexConfigFile, scopeDirs.codexHooksFile, pkgRoot, sharedMcpRegistry, resolvedMcpMode.mcpMode, resolvedScope.scope, scopeDirs.codexHomeDir, summary.config, backupContext, {
+        const managedConfig = await updateManagedConfig(scopeDirs.codexConfigFile, scopeDirs.codexHooksFile, pkgRoot, sharedMcpRegistry, resolvedMcpMode.mcpMode, shouldOfferFirstPartyMcpRemoval && !removeFirstPartyMcpRegistrations, resolvedScope.scope, scopeDirs.codexHomeDir, summary.config, backupContext, {
             dryRun,
             modelUpgradePrompt,
             verbose,
@@ -2150,7 +2215,7 @@ async function buildNotifyMergePlan(existingConfig, pkgRoot, codexHomeDir, scope
         },
     };
 }
-async function updateManagedConfig(configPath, hooksPath, pkgRoot, sharedMcpRegistry, mcpMode, scope, codexHomeDir, summary, backupContext, options) {
+async function updateManagedConfig(configPath, hooksPath, pkgRoot, sharedMcpRegistry, mcpMode, preserveExistingFirstPartyMcp, scope, codexHomeDir, summary, backupContext, options) {
     const existing = existsSync(configPath)
         ? await readFile(configPath, "utf-8")
         : "";
@@ -2185,6 +2250,7 @@ async function updateManagedConfig(configPath, hooksPath, pkgRoot, sharedMcpRegi
         forceStatusLinePreset: options.forceStatusLinePreset,
         notifyCommand: notifyPlan.notifyCommand,
         includeFirstPartyMcp: mcpMode === "compat",
+        preserveExistingFirstPartyMcp,
     });
     const changed = existing !== finalConfig;
     if (!changed) {